Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691760 | XP_004293968.1 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 1.12e-129 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691760 | sp|P46287|RL11_MEDSA | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 1.78e-132 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691760 | A0A3Q7K723 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.64e-129 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0691760 | 0.830946 | 2.205594e-55 | -8.615850e-47 |
| Msa0003030 | Msa0691760 | 0.850233 | 1.938561e-60 | -8.615850e-47 |
| Msa0003330 | Msa0691760 | 0.825696 | 4.071519e-54 | -8.615850e-47 |
| Msa0027590 | Msa0691760 | 0.814182 | 1.754728e-51 | -8.615850e-47 |
| Msa0037230 | Msa0691760 | 0.804088 | 2.555231e-49 | -8.615850e-47 |
| Msa0042510 | Msa0691760 | 0.835486 | 1.631801e-56 | -8.615850e-47 |
| Msa0079560 | Msa0691760 | 0.828344 | 9.474310e-55 | -8.615850e-47 |
| Msa0094210 | Msa0691760 | 0.810243 | 1.270129e-50 | -8.615850e-47 |
| Msa0602900 | Msa0691760 | 0.808933 | 2.427842e-50 | -8.615850e-47 |
| Msa0605140 | Msa0691760 | 0.800592 | 1.340525e-48 | -8.615850e-47 |
| Msa0605890 | Msa0691760 | 0.828711 | 7.721958e-55 | -8.615850e-47 |
| Msa0609120 | Msa0691760 | 0.900638 | 5.997995e-78 | -8.615850e-47 |
| Msa0619230 | Msa0691760 | 0.882368 | 1.104692e-70 | -8.615850e-47 |
| Msa0621190 | Msa0691760 | 0.905701 | 3.251040e-80 | -8.615850e-47 |
| Msa0643960 | Msa0691760 | 0.811149 | 8.086617e-51 | -8.615850e-47 |
| Msa0656450 | Msa0691760 | 0.901995 | 1.522410e-78 | -8.615850e-47 |
| Msa0691760 | Msa0694400 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa0691760 | Msa0700370 | 0.886056 | 4.767075e-72 | -8.615850e-47 |
| Msa0691760 | Msa0704860 | 0.818427 | 1.971820e-52 | -8.615850e-47 |
| Msa0691760 | Msa0708630 | 0.816424 | 5.569820e-52 | -8.615850e-47 |
| Msa0691760 | Msa0788960 | 0.831703 | 1.436643e-55 | -8.615850e-47 |
| Msa0691760 | Msa0790450 | 0.806871 | 6.664007e-50 | -8.615850e-47 |
| Msa0691760 | Msa0834220 | 0.823937 | 1.058524e-53 | -8.615850e-47 |
| Msa0691760 | Msa0881240 | 0.800546 | 1.369929e-48 | -8.615850e-47 |
| Msa0691760 | Msa0929680 | 0.820553 | 6.455165e-53 | -8.615850e-47 |
| Msa0691760 | Msa0929700 | 0.842290 | 2.831046e-58 | -8.615850e-47 |
| Msa0691760 | Msa0930360 | 0.871139 | 8.581860e-67 | -8.615850e-47 |
| Msa0691760 | Msa0930790 | 0.874108 | 8.733739e-68 | -8.615850e-47 |
| Msa0691760 | Msa1082050 | 0.831672 | 1.461509e-55 | -8.615850e-47 |
| Msa0691760 | Msa1117190 | -0.800301 | 1.537179e-48 | -8.615850e-47 |
| Msa0691760 | Msa1124980 | 0.810270 | 1.252772e-50 | -8.615850e-47 |
| Msa0691760 | Msa1126690 | 0.809680 | 1.679002e-50 | -8.615850e-47 |
| Msa0691760 | Msa1144630 | 0.831118 | 2.000633e-55 | -8.615850e-47 |
| Msa0691760 | Msa1156830 | 0.807915 | 4.002477e-50 | -8.615850e-47 |
| Msa0691760 | Msa1165700 | 0.842007 | 3.362069e-58 | -8.615850e-47 |
| Msa0691760 | Msa1167360 | 0.801673 | 8.057314e-49 | -8.615850e-47 |
| Msa0691760 | Msa1169470 | 0.807989 | 3.859398e-50 | -8.615850e-47 |
| Msa0691760 | Msa1227350 | 0.847463 | 1.137981e-59 | -8.615850e-47 |
| Msa0691760 | Msa1235950 | 0.850599 | 1.529670e-60 | -8.615850e-47 |
| Msa0691760 | Msa1235980 | 0.856836 | 2.456811e-62 | -8.615850e-47 |
| Msa0691760 | Msa1237040 | 0.809148 | 2.182988e-50 | -8.615850e-47 |
| Msa0691760 | Msa1245270 | 0.819453 | 1.152245e-52 | -8.615850e-47 |
| Msa0691760 | Msa1261970 | 0.803366 | 3.607763e-49 | -8.615850e-47 |
| Msa0691760 | Msa1284800 | 0.843249 | 1.573502e-58 | -8.615850e-47 |
| Msa0691760 | Msa1316100 | 0.817968 | 2.503796e-52 | -8.615850e-47 |
| Msa0691760 | Msa1317390 | 0.851471 | 8.686259e-61 | -8.615850e-47 |
| Msa0691760 | Msa1324470 | 0.821721 | 3.472513e-53 | -8.615850e-47 |
| Msa0691760 | Msa1329930 | 0.854912 | 8.973211e-62 | -8.615850e-47 |
| Msa0691760 | Msa1351020 | 0.857810 | 1.266564e-62 | -8.615850e-47 |
| Msa0691760 | Msa1363930 | 0.832005 | 1.209882e-55 | -8.615850e-47 |
| Msa0691760 | Msa1387750 | 0.882619 | 8.952158e-71 | -8.615850e-47 |
| Msa0691760 | Msa1390760 | 0.883352 | 4.826908e-71 | -8.615850e-47 |
| Msa0691760 | Msa1407550 | 0.872297 | 3.542828e-67 | -8.615850e-47 |
| Msa0691760 | Msa1413570 | 0.903927 | 2.089204e-79 | -8.615850e-47 |
| Msa0691760 | Msa1432310 | 0.880732 | 4.307625e-70 | -8.615850e-47 |
| Msa0691760 | Msa1446510 | 0.858535 | 7.705817e-63 | -8.615850e-47 |
| Msa0691760 | Msa1450560 | 0.810495 | 1.120693e-50 | -8.615850e-47 |
| Msa0691760 | Msa1465700 | 0.861077 | 1.321735e-63 | -8.615850e-47 |
| Msa0691760 | Msa1465890 | 0.825988 | 3.470526e-54 | -8.615850e-47 |
| Msa0127230 | Msa0691760 | 0.819349 | 1.217234e-52 | -8.615850e-47 |
| Msa0132460 | Msa0691760 | 0.816107 | 6.558586e-52 | -8.615850e-47 |
| Msa0146910 | Msa0691760 | 0.848256 | 6.883965e-60 | -8.615850e-47 |
| Msa0167860 | Msa0691760 | 0.822914 | 1.835556e-53 | -8.615850e-47 |
| Msa0168320 | Msa0691760 | 0.885219 | 9.815060e-72 | -8.615850e-47 |
| Msa0177940 | Msa0691760 | 0.812584 | 3.939166e-51 | -8.615850e-47 |
| Msa0182050 | Msa0691760 | 0.818716 | 1.695007e-52 | -8.615850e-47 |
| Msa0182100 | Msa0691760 | 0.845938 | 2.971260e-59 | -8.615850e-47 |
| Msa0183840 | Msa0691760 | 0.800656 | 1.301236e-48 | -8.615850e-47 |
| Msa0188740 | Msa0691760 | 0.808450 | 3.078181e-50 | -8.615850e-47 |
| Msa0192300 | Msa0691760 | 0.839860 | 1.230624e-57 | -8.615850e-47 |
| Msa0195030 | Msa0691760 | 0.819014 | 1.450907e-52 | -8.615850e-47 |
| Msa0233550 | Msa0691760 | 0.836287 | 1.022306e-56 | -8.615850e-47 |
| Msa0237180 | Msa0691760 | 0.802530 | 5.371067e-49 | -8.615850e-47 |
| Msa0371490 | Msa0691760 | 0.896620 | 3.097265e-76 | -8.615850e-47 |
| Msa0373350 | Msa0691760 | 0.865116 | 7.456449e-65 | -8.615850e-47 |
| Msa0376850 | Msa0691760 | 0.898890 | 3.405499e-77 | -8.615850e-47 |
| Msa0377520 | Msa0691760 | 0.840739 | 7.251716e-58 | -8.615850e-47 |
| Msa0377610 | Msa0691760 | 0.828129 | 1.066991e-54 | -8.615850e-47 |
| Msa0378620 | Msa0691760 | -0.805706 | 1.172713e-49 | -8.615850e-47 |
| Msa0382670 | Msa0691760 | 0.880447 | 5.447198e-70 | -8.615850e-47 |
| Msa0387290 | Msa0691760 | 0.840805 | 6.970659e-58 | -8.615850e-47 |
| Msa0388520 | Msa0691760 | 0.849541 | 3.025720e-60 | -8.615850e-47 |
| Msa0416470 | Msa0691760 | 0.866431 | 2.866228e-65 | -8.615850e-47 |
| Msa0421920 | Msa0691760 | 0.854235 | 1.408420e-61 | -8.615850e-47 |
| Msa0426940 | Msa0691760 | 0.816918 | 4.316892e-52 | -8.615850e-47 |
| Msa0467740 | Msa0691760 | 0.843732 | 1.169525e-58 | -8.615850e-47 |
| Msa0239420 | Msa0691760 | 0.843136 | 1.686880e-58 | -8.615850e-47 |
| Msa0256350 | Msa0691760 | 0.839072 | 1.972149e-57 | -8.615850e-47 |
| Msa0259850 | Msa0691760 | 0.804202 | 2.418696e-49 | -8.615850e-47 |
| Msa0274940 | Msa0691760 | 0.838482 | 2.801166e-57 | -8.615850e-47 |
| Msa0301250 | Msa0691760 | 0.844913 | 5.630822e-59 | -8.615850e-47 |
| Msa0313060 | Msa0691760 | 0.844640 | 6.671818e-59 | -8.615850e-47 |
| Msa0315660 | Msa0691760 | 0.816974 | 4.192232e-52 | -8.615850e-47 |
| Msa0511760 | Msa0691760 | 0.879022 | 1.749327e-69 | -8.615850e-47 |
| Msa0514130 | Msa0691760 | 0.839893 | 1.206687e-57 | -8.615850e-47 |
| Msa0516830 | Msa0691760 | 0.898903 | 3.359373e-77 | -8.615850e-47 |
| Msa0517480 | Msa0691760 | 0.803864 | 2.844685e-49 | -8.615850e-47 |
| Msa0547920 | Msa0691760 | 0.812700 | 3.715838e-51 | -8.615850e-47 |
| Msa0573550 | Msa0691760 | 0.848149 | 7.369040e-60 | -8.615850e-47 |
| Msa0574780 | Msa0691760 | 0.855904 | 4.611528e-62 | -8.615850e-47 |
| Msa0578010 | Msa0691760 | 0.862071 | 6.571097e-64 | -8.615850e-47 |
| Msa0597240 | Msa0691760 | 0.814547 | 1.457056e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691760 | MtrunA17_Chr8g0355901 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.14e-132 | 369 |
| Msa0691760 | MtrunA17_Chr4g0041531 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.40e-132 | 368 |
| Msa0691760 | MtrunA17_Chr3g0078591 | 99.441 | 179 | 1 | 0 | 3 | 181 | 4 | 182 | 3.03e-132 | 367 |
| Msa0691760 | MtrunA17_Chr3g0078581 | 81.818 | 143 | 26 | 0 | 38 | 180 | 2 | 144 | 2.92e-84 | 244 |
| Msa0691760 | MtrunA17_Chr7g0264261 | 90.476 | 42 | 4 | 0 | 1 | 42 | 1 | 42 | 4.13e-19 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691760 | AT2G42740.1 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 5.13e-129 | 360 |
| Msa0691760 | AT4G18730.1 | 95.028 | 181 | 9 | 0 | 1 | 181 | 1 | 181 | 2.23e-128 | 358 |
| Msa0691760 | AT3G58700.1 | 95.028 | 181 | 9 | 0 | 1 | 181 | 1 | 181 | 2.23e-128 | 358 |
| Msa0691760 | AT5G45775.2 | 95.028 | 181 | 9 | 0 | 1 | 181 | 1 | 181 | 2.23e-128 | 358 |
| Msa0691760 | AT5G45775.1 | 95.322 | 171 | 8 | 0 | 11 | 181 | 1 | 171 | 9.71e-121 | 338 |
Find 71 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTATCAGTCAGATTT+TGG | 0.109315 | 4_4:-60047520 | Msa0691760:three_prime_UTR |
| GACCCTTCTACTGGTATTTA+TGG | 0.148591 | 4_4:-60047782 | Msa0691760:CDS |
| TTGCTTTGGCTTTGGTATTC+AGG | 0.174953 | 4_4:-60048302 | Msa0691760:CDS |
| CGACAAGGCAATGCAGCTTT+TGG | 0.255810 | 4_4:-60048383 | Msa0691760:CDS |
| TTCAGTGATACTGGTTGCTT+TGG | 0.299214 | 4_4:-60048316 | Msa0691760:CDS |
| TATTCAGGAGCATATTGATT+TGG | 0.317273 | 4_4:-60048287 | Msa0691760:CDS |
| TGAACCTTGATCTCCCTCAT+TGG | 0.332362 | 4_4:+60049366 | None:intergenic |
| ATGTGGTGAACATTTCATTA+TGG | 0.333290 | 4_4:-60047340 | Msa0691760:three_prime_UTR |
| ATTCAGGAGCATATTGATTT+GGG | 0.344346 | 4_4:-60048286 | Msa0691760:CDS |
| AGGAGGAACTTCAGTGATAC+TGG | 0.352064 | 4_4:-60048325 | Msa0691760:CDS |
| GAACCTTGATCTCCCTCATT+GGG | 0.354507 | 4_4:+60049367 | None:intergenic |
| ATTCCATAAATACCAGTAGA+AGG | 0.360196 | 4_4:+60047779 | None:intergenic |
| CAATTGCCTGGGATTTGTTA+AGG | 0.361161 | 4_4:+60047618 | None:intergenic |
| TTTGACCTGGAACCACTTCA+TGG | 0.374960 | 4_4:+60047655 | None:intergenic |
| TTCAACATTAGCAAATTCTC+TGG | 0.377695 | 4_4:+60047287 | None:intergenic |
| GATACTGGTTGCTTTGGCTT+TGG | 0.383233 | 4_4:-60048310 | Msa0691760:CDS |
| TGATGCCATGAAGTGGTTCC+AGG | 0.388963 | 4_4:-60047660 | Msa0691760:CDS |
| TGGGTTCGCCAGTTTCTTCT+CGG | 0.418287 | 4_4:+60049386 | None:intergenic |
| AGGTACACTGTGCGATCCTT+TGG | 0.421779 | 4_4:-60048451 | Msa0691760:CDS |
| CCGCAGCCGCAACACATCAA+TGG | 0.425249 | 4_4:-60049412 | Msa0691760:exon |
| AACTATAGTTTGGTCTCTCT+TGG | 0.426898 | 4_4:-60047550 | Msa0691760:three_prime_UTR |
| GGAGTATTTAACACAGCTAT+AGG | 0.434952 | 4_4:+60047444 | None:intergenic |
| CGACGACCCACACGGTATCC+AGG | 0.444850 | 4_4:+60047731 | None:intergenic |
| AATGGCTTCCGAGAAGAAAC+TGG | 0.445897 | 4_4:-60049394 | Msa0691760:CDS |
| TTCTACTGGTATTTATGGAA+TGG | 0.448616 | 4_4:-60047777 | Msa0691760:CDS |
| CTCATTTCTTCTGATTCCAA+AGG | 0.457634 | 4_4:+60048435 | None:intergenic |
| CCATTGATGTGTTGCGGCTG+CGG | 0.462739 | 4_4:+60049412 | None:intergenic |
| AGTTTAACTAAACAATTGCC+TGG | 0.470565 | 4_4:+60047606 | None:intergenic |
| TTTGTTGTTCTGGAGCGCCC+TGG | 0.479272 | 4_4:-60047749 | Msa0691760:CDS |
| GGGCCTGTGATAAACGAAAC+TGG | 0.480933 | 4_4:-60047316 | Msa0691760:three_prime_UTR |
| TCCAGGTATGACCCTTCTAC+TGG | 0.482968 | 4_4:-60047791 | Msa0691760:intron |
| GCTGCGGCGGCAGAGATGAA+TGG | 0.490912 | 4_4:+60049428 | None:intergenic |
| ATTTCGAGTCAAGAATATAA+CGG | 0.492151 | 4_4:+60047377 | None:intergenic |
| TTGCCAGTTTCGTTTATCAC+AGG | 0.494167 | 4_4:+60047313 | None:intergenic |
| CAACACGGGCCTTGCATCTG+CGG | 0.505355 | 4_4:+60047708 | None:intergenic |
| GGAAAGTGGTTTAAAGGTGA+AGG | 0.505796 | 4_4:-60048362 | Msa0691760:CDS |
| GGGTCGTCGCCGCAGATGCA+AGG | 0.511173 | 4_4:-60047717 | Msa0691760:CDS |
| GGTGAACATTTCATTATGGC+GGG | 0.520610 | 4_4:-60047336 | Msa0691760:three_prime_UTR |
| GTGGTTCCAGGTCAAATATG+AGG | 0.522922 | 4_4:-60047648 | Msa0691760:CDS |
| AACATCTCCGTCGGTGAGAG+TGG | 0.528749 | 4_4:-60049330 | Msa0691760:CDS |
| GAACCCAATGAGGGAGATCA+AGG | 0.532538 | 4_4:-60049370 | Msa0691760:CDS |
| TAGGTGCTGGAACAACTTAG+TGG | 0.535243 | 4_4:-60049146 | Msa0691760:CDS |
| CGCAGATGCAAGGCCCGTGT+TGG | 0.542392 | 4_4:-60047707 | Msa0691760:CDS |
| AACTAACCTTTGGAGAACAC+TGG | 0.544806 | 4_4:+60049116 | None:intergenic |
| GTTTAACTAAACAATTGCCT+GGG | 0.556618 | 4_4:+60047607 | None:intergenic |
| TCGTCTCACCAGAGCTGCAA+AGG | 0.558754 | 4_4:-60049304 | Msa0691760:intron |
| ACTAACCTTTGGAGAACACT+GGG | 0.563850 | 4_4:+60049117 | None:intergenic |
| TGGCATCATCCTTCGTGACA+CGG | 0.570122 | 4_4:+60047675 | None:intergenic |
| CGGAAGCCATTGATGTGTTG+CGG | 0.571620 | 4_4:+60049406 | None:intergenic |
| TGGTGAACATTTCATTATGG+CGG | 0.576665 | 4_4:-60047337 | Msa0691760:three_prime_UTR |
| TTGATGTGTTGCGGCTGCGG+CGG | 0.581033 | 4_4:+60049415 | None:intergenic |
| GAGCGCCCTGGATACCGTGT+GGG | 0.587127 | 4_4:-60047737 | Msa0691760:CDS |
| GCATGCTATGTTACTGTCAG+AGG | 0.589351 | 4_4:-60048406 | Msa0691760:CDS |
| CTCGTTCTCAACATCTCCGT+CGG | 0.591586 | 4_4:-60049339 | Msa0691760:CDS |
| TTCCATAAATACCAGTAGAA+GGG | 0.597500 | 4_4:+60047780 | None:intergenic |
| CACGGTGTTGAATTCCAACA+CGG | 0.601715 | 4_4:+60047693 | None:intergenic |
| CGAAGGATGATGCCATGAAG+TGG | 0.606576 | 4_4:-60047667 | Msa0691760:CDS |
| GGAGCGCCCTGGATACCGTG+TGG | 0.607966 | 4_4:-60047738 | Msa0691760:CDS |
| GACGACCCACACGGTATCCA+GGG | 0.608386 | 4_4:+60047732 | None:intergenic |
| AGTGATCCTTAACAAATCCC+AGG | 0.615373 | 4_4:-60047624 | Msa0691760:CDS |
| TCACTCCCTCATATTTGACC+TGG | 0.621443 | 4_4:+60047642 | None:intergenic |
| TGGTTCCAGGTCAAATATGA+GGG | 0.622773 | 4_4:-60047647 | Msa0691760:CDS |
| TGTTACTGTCAGAGGCGACA+AGG | 0.632733 | 4_4:-60048398 | Msa0691760:CDS |
| CAAACCCCAGTGTTCTCCAA+AGG | 0.636410 | 4_4:-60049122 | Msa0691760:intron |
| GAAACTGGCGAACCCAATGA+GGG | 0.640398 | 4_4:-60049379 | Msa0691760:CDS |
| ACGATCTCCACTCTCACCGA+CGG | 0.655877 | 4_4:+60049323 | None:intergenic |
| ATCTGCGGCGACGACCCACA+CGG | 0.666808 | 4_4:+60047723 | None:intergenic |
| AGAAACTGGCGAACCCAATG+AGG | 0.672801 | 4_4:-60049380 | Msa0691760:CDS |
| ACGGTGTTGAATTCCAACAC+GGG | 0.675200 | 4_4:+60047694 | None:intergenic |
| AATTCAACACCGTGTCACGA+AGG | 0.700404 | 4_4:-60047684 | Msa0691760:CDS |
| CTAACCTTTGGAGAACACTG+GGG | 0.723201 | 4_4:+60049118 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTACATGTTTATTTTTAT+AGG | - | chr4_4:60047713-60047732 | Msa0691760:CDS | 10.0% |
| !!! | ATAAACTTTATTATCAATTT+TGG | - | chr4_4:60047739-60047758 | Msa0691760:CDS | 10.0% |
| !!! | TAAACTTTATTATCAATTTT+GGG | - | chr4_4:60047740-60047759 | Msa0691760:CDS | 10.0% |
| !! | TATTATATAATCTTATAAAC+TGG | - | chr4_4:60048202-60048221 | Msa0691760:intron | 10.0% |
| !!! | ACAAATATTTTCAATTAATT+TGG | + | chr4_4:60048609-60048628 | None:intergenic | 10.0% |
| !! | TAAAATTATTGAAACATTAT+TGG | - | chr4_4:60048903-60048922 | Msa0691760:intron | 10.0% |
| !!! | TATATATATTTTTGTGTTGT+AGG | - | chr4_4:60047574-60047593 | Msa0691760:three_prime_UTR | 15.0% |
| !! | AAAATAAATCCAAAAAAGAA+AGG | + | chr4_4:60048813-60048832 | None:intergenic | 15.0% |
| !!! | TTTTGTAGAAATTTATCACT+GGG | - | chr4_4:60047644-60047663 | Msa0691760:CDS | 20.0% |
| !! | TTCAGACAAAAAAATTAACT+TGG | - | chr4_4:60047813-60047832 | Msa0691760:intron | 20.0% |
| !! | TCAGACAAAAAAATTAACTT+GGG | - | chr4_4:60047814-60047833 | Msa0691760:intron | 20.0% |
| !!! | TCTAATTTAGGGTTAATTAT+GGG | - | chr4_4:60047850-60047869 | Msa0691760:intron | 20.0% |
| !!! | TAGTTTGATTTTGTAGTTAT+TGG | - | chr4_4:60047941-60047960 | Msa0691760:intron | 20.0% |
| !! | AAAGAAATGAAAGATGTTTA+CGG | - | chr4_4:60048073-60048092 | Msa0691760:intron | 20.0% |
| !! | CATATAATATTGGATAAATG+TGG | - | chr4_4:60048229-60048248 | Msa0691760:intron | 20.0% |
| !!! | GAAATTTTATGATATGACAT+AGG | - | chr4_4:60048554-60048573 | Msa0691760:intron | 20.0% |
| !!! | ATAATAAAGTTTGCTCTATA+TGG | - | chr4_4:60048665-60048684 | Msa0691760:intron | 20.0% |
| !! | AAATTGCAAAAACAGATAAT+TGG | + | chr4_4:60048759-60048778 | None:intergenic | 20.0% |
| !! | TATTTATGTTATCTTGCTTT+AGG | - | chr4_4:60048837-60048856 | Msa0691760:intron | 20.0% |
| !! | TATGAAATCAAACATTTATG+AGG | + | chr4_4:60048871-60048890 | None:intergenic | 20.0% |
| !!! | AAATTGTTGACTTGTTTTAA+TGG | + | chr4_4:60049342-60049361 | None:intergenic | 20.0% |
| ! | ATTTCTACAAAACTAACCTT+TGG | + | chr4_4:60047636-60047655 | None:intergenic | 25.0% |
| !! | GTTTTGTAGAAATTTATCAC+TGG | - | chr4_4:60047643-60047662 | Msa0691760:CDS | 25.0% |
| !! | CAGACAAAAAAATTAACTTG+GGG | - | chr4_4:60047815-60047834 | Msa0691760:intron | 25.0% |
| ! | TTGGTATGTAGTCTAATTTA+GGG | - | chr4_4:60047839-60047858 | Msa0691760:intron | 25.0% |
| !! | GTCTAATTTAGGGTTAATTA+TGG | - | chr4_4:60047849-60047868 | Msa0691760:intron | 25.0% |
| !! | AATGTGAAAGCTTGATAATA+GGG | - | chr4_4:60047909-60047928 | Msa0691760:intron | 25.0% |
| !!! | TAGTTATTGGTAATGATGAA+AGG | - | chr4_4:60047954-60047973 | Msa0691760:intron | 25.0% |
| !!! | GTACATTAGATTTTTTAGCA+TGG | + | chr4_4:60048159-60048178 | None:intergenic | 25.0% |
| ! | AACTGGCTATCATATAATAT+TGG | - | chr4_4:60048219-60048238 | Msa0691760:intron | 25.0% |
| !! | TTGTCAGAGATTAACATTTT+AGG | - | chr4_4:60048528-60048547 | Msa0691760:intron | 25.0% |
| ! | TTTATTATTCCTTGCTTTGT+TGG | - | chr4_4:60048637-60048656 | Msa0691760:intron | 25.0% |
| !!! | AATGGATTTTTTTGTTGTTC+TGG | - | chr4_4:60048980-60048999 | Msa0691760:intron | 25.0% |
| !! | TAGTTAAACTGAGTTCTTTT+AGG | - | chr4_4:60049146-60049165 | Msa0691760:CDS | 25.0% |
| !! | CTTAATTATCAGTCAGATTT+TGG | - | chr4_4:60049219-60049238 | Msa0691760:intron | 25.0% |
| !! | ATTTCGAGTCAAGAATATAA+CGG | + | chr4_4:60049365-60049384 | None:intergenic | 25.0% |
| ! | AATGAAAAATGAGAACTATG+TGG | - | chr4_4:60049382-60049401 | Msa0691760:CDS | 25.0% |
| CATTACACTTTCAAATCACT+AGG | + | chr4_4:60047790-60047809 | None:intergenic | 30.0% | |
| ! | AAAAAAATTAACTTGGGGCT+TGG | - | chr4_4:60047820-60047839 | Msa0691760:intron | 30.0% |
| CTTGGTATGTAGTCTAATTT+AGG | - | chr4_4:60047838-60047857 | Msa0691760:intron | 30.0% | |
| ! | CAATGTGAAAGCTTGATAAT+AGG | - | chr4_4:60047908-60047927 | Msa0691760:intron | 30.0% |
| TGAACTTGTGACTAAAATTG+TGG | - | chr4_4:60047979-60047998 | Msa0691760:intron | 30.0% | |
| TTGTGACTAAAATTGTGGTA+AGG | - | chr4_4:60047984-60048003 | Msa0691760:intron | 30.0% | |
| AAATTGTGGTAAGGTTGTTA+CGG | - | chr4_4:60047993-60048012 | Msa0691760:intron | 30.0% | |
| ! | CATTTCTTTTCTTACATGTG+TGG | + | chr4_4:60048062-60048081 | None:intergenic | 30.0% |
| !!! | GATTTTTTAGCATGGAAACT+AGG | + | chr4_4:60048151-60048170 | None:intergenic | 30.0% |
| ! | TATTCAGGAGCATATTGATT+TGG | - | chr4_4:60048452-60048471 | Msa0691760:CDS | 30.0% |
| !! | ATTCAGGAGCATATTGATTT+GGG | - | chr4_4:60048453-60048472 | Msa0691760:CDS | 30.0% |
| TTCCATAAATACCAGTAGAA+GGG | + | chr4_4:60048962-60048981 | None:intergenic | 30.0% | |
| ATTCCATAAATACCAGTAGA+AGG | + | chr4_4:60048963-60048982 | None:intergenic | 30.0% | |
| TTCTACTGGTATTTATGGAA+TGG | - | chr4_4:60048962-60048981 | Msa0691760:intron | 30.0% | |
| GTTTAACTAAACAATTGCCT+GGG | + | chr4_4:60049135-60049154 | None:intergenic | 30.0% | |
| AGTTTAACTAAACAATTGCC+TGG | + | chr4_4:60049136-60049155 | None:intergenic | 30.0% | |
| ! | TAGGATTATGTTACCGTTTT+TGG | - | chr4_4:60049165-60049184 | Msa0691760:intron | 30.0% |
| CAAACTATAGTTGCCAAAAA+CGG | + | chr4_4:60049181-60049200 | None:intergenic | 30.0% | |
| AGGTTCAAAAAACTTAGCAT+AGG | + | chr4_4:60049319-60049338 | None:intergenic | 30.0% | |
| !!! | TTGTTGACTTGTTTTAATGG+AGG | + | chr4_4:60049339-60049358 | None:intergenic | 30.0% |
| ATGTGGTGAACATTTCATTA+TGG | - | chr4_4:60049399-60049418 | Msa0691760:exon | 30.0% | |
| !! | TATTTTTGTGTTGTAGGTGC+TGG | - | chr4_4:60047580-60047599 | Msa0691760:three_prime_UTR | 35.0% |
| !! | TGGTAATGAGTGTGGATTTT+AGG | - | chr4_4:60047681-60047700 | Msa0691760:CDS | 35.0% |
| ! | GGTAATGAGTGTGGATTTTA+GGG | - | chr4_4:60047682-60047701 | Msa0691760:CDS | 35.0% |
| AATTGTGGTAAGGTTGTTAC+GGG | - | chr4_4:60047994-60048013 | Msa0691760:intron | 35.0% | |
| ! | TCCTTTGAATTTTTACAGCG+AGG | - | chr4_4:60048268-60048287 | Msa0691760:intron | 35.0% |
| ACCTCGCTGTAAAAATTCAA+AGG | + | chr4_4:60048272-60048291 | None:intergenic | 35.0% | |
| CTCATTTCTTCTGATTCCAA+AGG | + | chr4_4:60048307-60048326 | None:intergenic | 35.0% | |
| !! | GCTTTTGGAAAGTGGTTTAA+AGG | - | chr4_4:60048371-60048390 | Msa0691760:CDS | 35.0% |
| !! | TGAAGGAGTATGAACTTTTG+AGG | - | chr4_4:60048394-60048413 | Msa0691760:CDS | 35.0% |
| GTAAGCTTAAGAACAACTCT+TGG | - | chr4_4:60048482-60048501 | Msa0691760:intron | 35.0% | |
| ! | CAGAGATTAACATTTTAGGC+AGG | - | chr4_4:60048532-60048551 | Msa0691760:intron | 35.0% |
| TTATATGCACCAACAAAGCA+AGG | + | chr4_4:60048649-60048668 | None:intergenic | 35.0% | |
| AAATCCAAAAAAGAAAGGCG+TGG | + | chr4_4:60048808-60048827 | None:intergenic | 35.0% | |
| !!! | CGTTTTTGGCAACTATAGTT+TGG | - | chr4_4:60049179-60049198 | Msa0691760:intron | 35.0% |
| AACTATAGTTTGGTCTCTCT+TGG | - | chr4_4:60049189-60049208 | Msa0691760:intron | 35.0% | |
| !! | TTGTTTTATGACGAAGCACA+TGG | - | chr4_4:60049268-60049287 | Msa0691760:intron | 35.0% |
| ! | TGTTTTATGACGAAGCACAT+GGG | - | chr4_4:60049269-60049288 | Msa0691760:intron | 35.0% |
| ! | GGAGTATTTAACACAGCTAT+AGG | + | chr4_4:60049298-60049317 | None:intergenic | 35.0% |
| TGGTGAACATTTCATTATGG+CGG | - | chr4_4:60049402-60049421 | Msa0691760:exon | 35.0% | |
| ! | ACTAACCTTTGGAGAACACT+GGG | + | chr4_4:60047625-60047644 | None:intergenic | 40.0% |
| ! | AACTAACCTTTGGAGAACAC+TGG | + | chr4_4:60047626-60047645 | None:intergenic | 40.0% |
| ACTGGGTTCTTATGTAATGC+TGG | - | chr4_4:60047661-60047680 | Msa0691760:CDS | 40.0% | |
| ! | TGTAATGCTGGTAATGAGTG+TGG | - | chr4_4:60047673-60047692 | Msa0691760:CDS | 40.0% |
| ! | TGTGGTGTACTTGAGCATTT+TGG | - | chr4_4:60048105-60048124 | Msa0691760:intron | 40.0% |
| GGAAAGTGGTTTAAAGGTGA+AGG | - | chr4_4:60048377-60048396 | Msa0691760:CDS | 40.0% | |
| !! | AGGAGTATGAACTTTTGAGG+AGG | - | chr4_4:60048397-60048416 | Msa0691760:CDS | 40.0% |
| ! | TTCAGTGATACTGGTTGCTT+TGG | - | chr4_4:60048423-60048442 | Msa0691760:CDS | 40.0% |
| !! | TTGCTTTGGCTTTGGTATTC+AGG | - | chr4_4:60048437-60048456 | Msa0691760:CDS | 40.0% |
| TGACATAGGTTGTGTACTTG+TGG | - | chr4_4:60048568-60048587 | Msa0691760:intron | 40.0% | |
| ! | GTTTGCTCTATATGGTCTTG+AGG | - | chr4_4:60048673-60048692 | Msa0691760:intron | 40.0% |
| ! | CTATATGGTCTTGAGGAACA+AGG | - | chr4_4:60048680-60048699 | Msa0691760:intron | 40.0% |
| TGAGGAACAAGGACTTATGT+AGG | - | chr4_4:60048691-60048710 | Msa0691760:intron | 40.0% | |
| AACAAGGACTTATGTAGGCT+AGG | - | chr4_4:60048696-60048715 | Msa0691760:intron | 40.0% | |
| GACCCTTCTACTGGTATTTA+TGG | - | chr4_4:60048957-60048976 | Msa0691760:intron | 40.0% | |
| TGGTTCCAGGTCAAATATGA+GGG | - | chr4_4:60049092-60049111 | Msa0691760:intron | 40.0% | |
| AGTGATCCTTAACAAATCCC+AGG | - | chr4_4:60049115-60049134 | Msa0691760:intron | 40.0% | |
| !! | CAATTGCCTGGGATTTGTTA+AGG | + | chr4_4:60049124-60049143 | None:intergenic | 40.0% |
| GGTGAACATTTCATTATGGC+GGG | - | chr4_4:60049403-60049422 | Msa0691760:exon | 40.0% | |
| TTGCCAGTTTCGTTTATCAC+AGG | + | chr4_4:60049429-60049448 | None:intergenic | 40.0% | |
| AATGGCTTCCGAGAAGAAAC+TGG | - | chr4_4:60047345-60047364 | Msa0691760:three_prime_UTR | 45.0% | |
| GAACCTTGATCTCCCTCATT+GGG | + | chr4_4:60047375-60047394 | None:intergenic | 45.0% | |
| TGAACCTTGATCTCCCTCAT+TGG | + | chr4_4:60047376-60047395 | None:intergenic | 45.0% | |
| GGTAAAAACCTTTGCAGCTC+TGG | + | chr4_4:60047446-60047465 | None:intergenic | 45.0% | |
| ! | GTTTTTACCCCTCTTCTCAC+TGG | - | chr4_4:60047457-60047476 | Msa0691760:three_prime_UTR | 45.0% |
| ACTCAGATCCAGTGAGAAGA+GGG | + | chr4_4:60047468-60047487 | None:intergenic | 45.0% | |
| AACTCAGATCCAGTGAGAAG+AGG | + | chr4_4:60047469-60047488 | None:intergenic | 45.0% | |
| !! | TAGGTGCTGGAACAACTTAG+TGG | - | chr4_4:60047593-60047612 | Msa0691760:three_prime_UTR | 45.0% |
| ! | CTAACCTTTGGAGAACACTG+GGG | + | chr4_4:60047624-60047643 | None:intergenic | 45.0% |
| AAGGTTGTTACGGGTCTTAG+AGG | - | chr4_4:60048003-60048022 | Msa0691760:intron | 45.0% | |
| GTTACGGGTCTTAGAGGAAT+AGG | - | chr4_4:60048009-60048028 | Msa0691760:intron | 45.0% | |
| ! | TGTTTACGGTCTTCGACTTG+TGG | - | chr4_4:60048087-60048106 | Msa0691760:intron | 45.0% |
| GCATGCTATGTTACTGTCAG+AGG | - | chr4_4:60048333-60048352 | Msa0691760:CDS | 45.0% | |
| !! | GCAATGCAGCTTTTGGAAAG+TGG | - | chr4_4:60048363-60048382 | Msa0691760:CDS | 45.0% |
| AGGAGGAACTTCAGTGATAC+TGG | - | chr4_4:60048414-60048433 | Msa0691760:CDS | 45.0% | |
| ! | GATACTGGTTGCTTTGGCTT+TGG | - | chr4_4:60048429-60048448 | Msa0691760:CDS | 45.0% |
| !!! | ACTGCCACGCCTTTCTTTTT+TGG | - | chr4_4:60048801-60048820 | Msa0691760:intron | 45.0% |
| GAGCAGATTGTCAAGCATCA+GGG | + | chr4_4:60048930-60048949 | None:intergenic | 45.0% | |
| ! | ACGGTGTTGAATTCCAACAC+GGG | + | chr4_4:60049048-60049067 | None:intergenic | 45.0% |
| ! | CACGGTGTTGAATTCCAACA+CGG | + | chr4_4:60049049-60049068 | None:intergenic | 45.0% |
| AATTCAACACCGTGTCACGA+AGG | - | chr4_4:60049055-60049074 | Msa0691760:intron | 45.0% | |
| TTTGACCTGGAACCACTTCA+TGG | + | chr4_4:60049087-60049106 | None:intergenic | 45.0% | |
| GTGGTTCCAGGTCAAATATG+AGG | - | chr4_4:60049091-60049110 | Msa0691760:intron | 45.0% | |
| TCACTCCCTCATATTTGACC+TGG | + | chr4_4:60049100-60049119 | None:intergenic | 45.0% | |
| CGGAAGCCATTGATGTGTTG+CGG | + | chr4_4:60047336-60047355 | None:intergenic | 50.0% | |
| TGGGTTCGCCAGTTTCTTCT+CGG | + | chr4_4:60047356-60047375 | None:intergenic | 50.0% | |
| AGAAACTGGCGAACCCAATG+AGG | - | chr4_4:60047359-60047378 | Msa0691760:three_prime_UTR | 50.0% | |
| GAAACTGGCGAACCCAATGA+GGG | - | chr4_4:60047360-60047379 | Msa0691760:three_prime_UTR | 50.0% | |
| GAACCCAATGAGGGAGATCA+AGG | - | chr4_4:60047369-60047388 | Msa0691760:three_prime_UTR | 50.0% | |
| CTCGTTCTCAACATCTCCGT+CGG | - | chr4_4:60047400-60047419 | Msa0691760:three_prime_UTR | 50.0% | |
| CTCAGATCCAGTGAGAAGAG+GGG | + | chr4_4:60047467-60047486 | None:intergenic | 50.0% | |
| CAAACCCCAGTGTTCTCCAA+AGG | - | chr4_4:60047617-60047636 | Msa0691760:CDS | 50.0% | |
| AGGTACACTGTGCGATCCTT+TGG | - | chr4_4:60048288-60048307 | Msa0691760:CDS | 50.0% | |
| TGTTACTGTCAGAGGCGACA+AGG | - | chr4_4:60048341-60048360 | Msa0691760:CDS | 50.0% | |
| ! | CGACAAGGCAATGCAGCTTT+TGG | - | chr4_4:60048356-60048375 | Msa0691760:CDS | 50.0% |
| GGAGCAGATTGTCAAGCATC+AGG | + | chr4_4:60048931-60048950 | None:intergenic | 50.0% | |
| GATGCTTGACAATCTGCTCC+AGG | - | chr4_4:60048931-60048950 | Msa0691760:intron | 50.0% | |
| TCCAGGTATGACCCTTCTAC+TGG | - | chr4_4:60048948-60048967 | Msa0691760:intron | 50.0% | |
| ACCAGTAGAAGGGTCATACC+TGG | + | chr4_4:60048952-60048971 | None:intergenic | 50.0% | |
| TGGCATCATCCTTCGTGACA+CGG | + | chr4_4:60049067-60049086 | None:intergenic | 50.0% | |
| CGAAGGATGATGCCATGAAG+TGG | - | chr4_4:60049072-60049091 | Msa0691760:intron | 50.0% | |
| TGATGCCATGAAGTGGTTCC+AGG | - | chr4_4:60049079-60049098 | Msa0691760:intron | 50.0% | |
| GGGCCTGTGATAAACGAAAC+TGG | - | chr4_4:60049423-60049442 | Msa0691760:five_prime_UTR | 50.0% | |
| CCATTGATGTGTTGCGGCTG+CGG | + | chr4_4:60047330-60047349 | None:intergenic | 55.0% | |
| AACATCTCCGTCGGTGAGAG+TGG | - | chr4_4:60047409-60047428 | Msa0691760:three_prime_UTR | 55.0% | |
| ACGATCTCCACTCTCACCGA+CGG | + | chr4_4:60047419-60047438 | None:intergenic | 55.0% | |
| TCGTCTCACCAGAGCTGCAA+AGG | - | chr4_4:60047435-60047454 | Msa0691760:three_prime_UTR | 55.0% | |
| !! | TTTGTTGTTCTGGAGCGCCC+TGG | - | chr4_4:60048990-60049009 | Msa0691760:intron | 55.0% |
| TTGATGTGTTGCGGCTGCGG+CGG | + | chr4_4:60047327-60047346 | None:intergenic | 60.0% | |
| CCGCAGCCGCAACACATCAA+TGG | - | chr4_4:60047327-60047346 | Msa0691760:three_prime_UTR | 60.0% | |
| GACGACCCACACGGTATCCA+GGG | + | chr4_4:60049010-60049029 | None:intergenic | 60.0% | |
| CAACACGGGCCTTGCATCTG+CGG | + | chr4_4:60049034-60049053 | None:intergenic | 60.0% | |
| GCTGCGGCGGCAGAGATGAA+TGG | + | chr4_4:60047314-60047333 | None:intergenic | 65.0% | |
| GAGCGCCCTGGATACCGTGT+GGG | - | chr4_4:60049002-60049021 | Msa0691760:intron | 65.0% | |
| CGACGACCCACACGGTATCC+AGG | + | chr4_4:60049011-60049030 | None:intergenic | 65.0% | |
| ATCTGCGGCGACGACCCACA+CGG | + | chr4_4:60049019-60049038 | None:intergenic | 65.0% | |
| CGCAGATGCAAGGCCCGTGT+TGG | - | chr4_4:60049032-60049051 | Msa0691760:intron | 65.0% | |
| ! | GGAGCGCCCTGGATACCGTG+TGG | - | chr4_4:60049001-60049020 | Msa0691760:intron | 70.0% |
| GGGTCGTCGCCGCAGATGCA+AGG | - | chr4_4:60049022-60049041 | Msa0691760:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60047297 | 60049464 | 60047297 | ID=Msa0691760;Name=Msa0691760 |
| chr4_4 | mRNA | 60047297 | 60049464 | 60047297 | ID=Msa0691760-mRNA-1;Parent=Msa0691760;Name=Msa0691760-mRNA-1;_AED=0.05;_eAED=0.05;_QI=49|1|1|1|1|1|4|316|181 |
| chr4_4 | exon | 60047297 | 60047808 | 60047297 | ID=Msa0691760-mRNA-1:exon:16362;Parent=Msa0691760-mRNA-1 |
| chr4_4 | exon | 60048280 | 60048475 | 60048280 | ID=Msa0691760-mRNA-1:exon:16361;Parent=Msa0691760-mRNA-1 |
| chr4_4 | exon | 60049123 | 60049165 | 60049123 | ID=Msa0691760-mRNA-1:exon:16360;Parent=Msa0691760-mRNA-1 |
| chr4_4 | exon | 60049305 | 60049464 | 60049305 | ID=Msa0691760-mRNA-1:exon:16359;Parent=Msa0691760-mRNA-1 |
| chr4_4 | five_prime_UTR | 60049416 | 60049464 | 60049416 | ID=Msa0691760-mRNA-1:five_prime_utr;Parent=Msa0691760-mRNA-1 |
| chr4_4 | CDS | 60049305 | 60049415 | 60049305 | ID=Msa0691760-mRNA-1:cds;Parent=Msa0691760-mRNA-1 |
| chr4_4 | CDS | 60049123 | 60049165 | 60049123 | ID=Msa0691760-mRNA-1:cds;Parent=Msa0691760-mRNA-1 |
| chr4_4 | CDS | 60048280 | 60048475 | 60048280 | ID=Msa0691760-mRNA-1:cds;Parent=Msa0691760-mRNA-1 |
| chr4_4 | CDS | 60047613 | 60047808 | 60047613 | ID=Msa0691760-mRNA-1:cds;Parent=Msa0691760-mRNA-1 |
| chr4_4 | three_prime_UTR | 60047297 | 60047612 | 60047297 | ID=Msa0691760-mRNA-1:three_prime_utr;Parent=Msa0691760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
