Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1189540 | XP_003611879.1 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1189540 | sp|P49204|RS42_ARATH | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1189540 | 0.839180 | 1.848706e-57 | -8.615850e-47 |
| Msa0042510 | Msa1189540 | 0.823094 | 1.666394e-53 | -8.615850e-47 |
| Msa0079560 | Msa1189540 | 0.824247 | 8.952994e-54 | -8.615850e-47 |
| Msa0621190 | Msa1189540 | 0.806433 | 8.246617e-50 | -8.615850e-47 |
| Msa0127230 | Msa1189540 | 0.825449 | 4.658584e-54 | -8.615850e-47 |
| Msa0146910 | Msa1189540 | 0.836578 | 8.620779e-57 | -8.615850e-47 |
| Msa1189540 | Msa1227350 | 0.812738 | 3.645754e-51 | -8.615850e-47 |
| Msa1189540 | Msa1324470 | 0.830577 | 2.716164e-55 | -8.615850e-47 |
| Msa1189540 | Msa1387750 | 0.806316 | 8.729038e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1189540 | MtrunA17_Chr5g0403311 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Msa1189540 | MtrunA17_Chr8g0357951 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| Msa1189540 | MtrunA17_Chr4g0005611 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| Msa1189540 | MtrunA17_Chr7g0243211 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1189540 | AT5G07090.1 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| Msa1189540 | AT2G17360.1 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| Msa1189540 | AT5G58420.1 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| Msa1189540 | AT5G07090.3 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| Msa1189540 | AT5G07090.2 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| Msa1189540 | AT2G17360.2 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.71e-125 | 354 |
Find 103 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATATCTTTATCAATTT+TGG | 0.092164 | 8_1:+31430239 | Msa1189540:three_prime_UTR |
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 8_1:+31428259 | Msa1189540:CDS |
| CGTCAGGACCACACAAATCT+AGG | 0.320235 | 8_1:+31428386 | Msa1189540:CDS |
| TGTGGTCCTGACGAGGGTTT+TGG | 0.324202 | 8_1:-31428376 | None:intergenic |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 8_1:-31429841 | None:intergenic |
| TGAAATCAAGGCTTCAGAAT+TGG | 0.339462 | 8_1:-31430490 | None:intergenic |
| AGGTTCGTTCAGTGCAATTC+GGG | 0.351340 | 8_1:+31429767 | Msa1189540:CDS |
| GAAATCAAGGCTTCAGAATT+GGG | 0.351510 | 8_1:-31430489 | None:intergenic |
| TTCCTCCAGATCCAACTTGA+TGG | 0.352738 | 8_1:-31429869 | None:intergenic |
| GCTACCCAGACCCCGTCATC+AGG | 0.361624 | 8_1:+31429836 | Msa1189540:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 8_1:-31428254 | None:intergenic |
| GCGGATTGTGCGACCATCAT+AGG | 0.389914 | 8_1:-31429815 | None:intergenic |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 8_1:+31428531 | Msa1189540:CDS |
| AGGCTTCAGAATTGGGCATT+AGG | 0.395967 | 8_1:-31430482 | None:intergenic |
| ATTTCATTAAATTTGATGTT+GGG | 0.401296 | 8_1:+31429905 | Msa1189540:CDS |
| AGTTGCTGCTTAAATATCTA+TGG | 0.401734 | 8_1:+31430179 | Msa1189540:exon |
| GGGAATGTCGTTATGGTTAC+CGG | 0.402699 | 8_1:+31429925 | Msa1189540:CDS |
| AAGGTTCGTTCAGTGCAATT+CGG | 0.403517 | 8_1:+31429766 | Msa1189540:CDS |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 8_1:+31430057 | Msa1189540:CDS |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 8_1:-31428255 | None:intergenic |
| CCATCATAGGTGTTAAGGTA+TGG | 0.437978 | 8_1:-31429802 | None:intergenic |
| TGCGACCATCATAGGTGTTA+AGG | 0.441324 | 8_1:-31429807 | None:intergenic |
| GTGGAGACGGAAGCGGCCTT+TGG | 0.446180 | 8_1:-31429252 | None:intergenic |
| TCCTTGTTGACGGCAAAGTC+AGG | 0.447044 | 8_1:+31428500 | Msa1189540:CDS |
| GATTTCATTAAATTTGATGT+TGG | 0.447382 | 8_1:+31429904 | Msa1189540:CDS |
| TGATGTTGGGAATGTCGTTA+TGG | 0.448181 | 8_1:+31429918 | Msa1189540:CDS |
| GAGGTAAAACAAAATCAAAA+AGG | 0.453338 | 8_1:-31430527 | None:intergenic |
| TCATGAGTTTGCAACTCGTC+TGG | 0.461260 | 8_1:+31430038 | Msa1189540:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 8_1:+31428260 | Msa1189540:CDS |
| CAGCGACATGTCCTTGTTGA+CGG | 0.464647 | 8_1:+31428490 | Msa1189540:CDS |
| ATTCTAGCTGGATATTGTAA+TGG | 0.465035 | 8_1:+31430339 | Msa1189540:three_prime_UTR |
| GTGTCATTAGCCCTGATGAC+GGG | 0.468677 | 8_1:-31429847 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.470117 | 8_1:-31429840 | None:intergenic |
| TGATGACGGGGTCTGGGTAG+CGG | 0.470305 | 8_1:-31429834 | None:intergenic |
| CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 8_1:+31429978 | Msa1189540:CDS |
| TGACACCATCAAGTTGGATC+TGG | 0.473032 | 8_1:+31429864 | Msa1189540:CDS |
| AGCTTAATACCCTTACCCTT+GGG | 0.483433 | 8_1:-31430108 | None:intergenic |
| GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 8_1:+31430098 | Msa1189540:CDS |
| TTACAGTCATCGAGGAAGCT+AGG | 0.496234 | 8_1:+31430130 | Msa1189540:CDS |
| AAGCTTAATACCCTTACCCT+TGG | 0.502359 | 8_1:-31430109 | None:intergenic |
| GGCACCAGTGCCTAGTCACC+TGG | 0.509421 | 8_1:+31430564 | Msa1189540:three_prime_UTR |
| GAACTAGAAGTTGAAGTTGA+GGG | 0.511400 | 8_1:-31430303 | None:intergenic |
| TAGGCTCCAAAACCCTCGTC+AGG | 0.512287 | 8_1:+31428370 | Msa1189540:intron |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 8_1:+31428532 | Msa1189540:CDS |
| TGAGAATAGCGATAACTTCA+CGG | 0.517701 | 8_1:-31428465 | None:intergenic |
| GCTCTCGATATGTCATCAAC+TGG | 0.518436 | 8_1:-31430409 | None:intergenic |
| CCATACCTTAACACCTATGA+TGG | 0.520450 | 8_1:+31429802 | Msa1189540:CDS |
| TTCATACCCATGAATCCAGC+TGG | 0.521349 | 8_1:-31428538 | None:intergenic |
| CATCATAGGTGTTAAGGTAT+GGG | 0.527232 | 8_1:-31429801 | None:intergenic |
| CATCTCTGACTGAGTGGAGA+CGG | 0.531082 | 8_1:-31429265 | None:intergenic |
| TTGGCAAGGGCACAAAGCCA+TGG | 0.537474 | 8_1:+31430076 | Msa1189540:CDS |
| GGCTAATGACACCATCAAGT+TGG | 0.539972 | 8_1:+31429858 | Msa1189540:CDS |
| TCATCGAGGAAGCTAGGAAG+AGG | 0.541078 | 8_1:+31430136 | Msa1189540:CDS |
| CAGAATTGGGCATTAGGCAG+AGG | 0.546877 | 8_1:-31430476 | None:intergenic |
| TTACCTCATGTCAATGCTCA+AGG | 0.549744 | 8_1:+31430543 | Msa1189540:three_prime_UTR |
| ATCCACGTGCAGGATGCTAC+TGG | 0.550260 | 8_1:+31430015 | Msa1189540:CDS |
| TAATCTCCAACCAGGTGACT+AGG | 0.553962 | 8_1:-31430574 | None:intergenic |
| AGATTTGTGTGGTCCTGACG+AGG | 0.555265 | 8_1:-31428383 | None:intergenic |
| GTTACCGGTGGTAAGAATAG+AGG | 0.559880 | 8_1:+31429940 | Msa1189540:CDS |
| CACCATCAAGTTGGATCTGG+AGG | 0.560278 | 8_1:+31429867 | Msa1189540:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.561451 | 8_1:+31430062 | Msa1189540:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 8_1:-31428253 | None:intergenic |
| AGTCAGAGATGATGAGGCTA+AGG | 0.568863 | 8_1:+31429277 | Msa1189540:CDS |
| AGCTAGGAAGAGGGCTGCTG+CGG | 0.574575 | 8_1:+31430146 | Msa1189540:CDS |
| GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 8_1:+31430092 | Msa1189540:CDS |
| TTTCGCAAAATCAGAATGAG+TGG | 0.587385 | 8_1:-31428418 | None:intergenic |
| GTCAGGACCACACAAATCTA+GGG | 0.588053 | 8_1:+31428387 | Msa1189540:CDS |
| TGATTTCATAATCTCCAACC+AGG | 0.588205 | 8_1:-31430582 | None:intergenic |
| GATTGAAGAAGCATTTGAAG+AGG | 0.590583 | 8_1:+31428222 | Msa1189540:CDS |
| ATTTGAGACAATCCACGTGC+AGG | 0.592997 | 8_1:+31430005 | Msa1189540:CDS |
| GATTTGTGTGGTCCTGACGA+GGG | 0.594605 | 8_1:-31428382 | None:intergenic |
| GGTAAGAATAGAGGACGTGT+TGG | 0.595253 | 8_1:+31429949 | Msa1189540:CDS |
| TCAGTGCAATTCGGGCAGAA+AGG | 0.596836 | 8_1:+31429775 | Msa1189540:CDS |
| AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 8_1:+31429979 | Msa1189540:CDS |
| ACGTCCTCTATTCTTACCAC+CGG | 0.599307 | 8_1:-31429944 | None:intergenic |
| GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 8_1:+31430099 | Msa1189540:CDS |
| CCACTCAGTCAGAGATGATG+AGG | 0.601236 | 8_1:+31429271 | Msa1189540:CDS |
| TGGCAAGGGCACAAAGCCAT+GGG | 0.601941 | 8_1:+31430077 | Msa1189540:CDS |
| CCAACCAGGTGACTAGGCAC+TGG | 0.605389 | 8_1:-31430568 | None:intergenic |
| TCCTGACTTTGCCGTCAACA+AGG | 0.608758 | 8_1:-31428501 | None:intergenic |
| AGAACTAGAAGTTGAAGTTG+AGG | 0.609730 | 8_1:-31430304 | None:intergenic |
| CTACCCAGACCCCGTCATCA+GGG | 0.613237 | 8_1:+31429837 | Msa1189540:CDS |
| GACCAGTAGCATCCTGCACG+TGG | 0.616253 | 8_1:-31430017 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 8_1:+31428523 | Msa1189540:CDS |
| CTGTGAATGTAACAGGCTAG+AGG | 0.625011 | 8_1:+31428200 | Msa1189540:intron |
| CCAGTGCCTAGTCACCTGGT+TGG | 0.625870 | 8_1:+31430568 | Msa1189540:three_prime_UTR |
| CTTTGGTATCATAAAGCAGA+CGG | 0.627128 | 8_1:-31429235 | None:intergenic |
| CCTCATCATCTCTGACTGAG+TGG | 0.630230 | 8_1:-31429271 | None:intergenic |
| TGACTGAGTGGAGACGGAAG+CGG | 0.632899 | 8_1:-31429259 | None:intergenic |
| GGTGTCATTAGCCCTGATGA+CGG | 0.635671 | 8_1:-31429848 | None:intergenic |
| CATCGAGGAAGCTAGGAAGA+GGG | 0.635832 | 8_1:+31430137 | Msa1189540:CDS |
| TGTCATTAGCCCTGATGACG+GGG | 0.637880 | 8_1:-31429846 | None:intergenic |
| AATGTGTTCACTATTGGCAA+GGG | 0.644607 | 8_1:+31430063 | Msa1189540:CDS |
| CGTCTGCTTTATGATACCAA+AGG | 0.648327 | 8_1:+31429236 | Msa1189540:CDS |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 8_1:-31428252 | None:intergenic |
| ATGGCAGTTCAAGCTCTGCA+AGG | 0.650875 | 8_1:+31429747 | Msa1189540:intron |
| CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 8_1:-31430093 | None:intergenic |
| AGACATTCCCTAGATTTGTG+TGG | 0.654592 | 8_1:-31428394 | None:intergenic |
| CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 8_1:+31430093 | Msa1189540:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 8_1:+31428263 | Msa1189540:CDS |
| AATGTCGTTATGGTTACCGG+TGG | 0.694899 | 8_1:+31429928 | Msa1189540:CDS |
| TATTAAGCTTACAGTCATCG+AGG | 0.723795 | 8_1:+31430122 | Msa1189540:CDS |
| GTGCCTTGAGCATTGACATG+AGG | 0.738807 | 8_1:-31430546 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATTAAATTTGATGTT+GGG | + | chr8_1:31429905-31429924 | Msa1189540:CDS | 15.0% |
| !!! | TTGAATATCTTTATCAATTT+TGG | + | chr8_1:31430239-31430258 | Msa1189540:three_prime_UTR | 15.0% |
| !!! | TTTATTTTCATCTTATCAAA+AGG | + | chr8_1:31430386-31430405 | Msa1189540:three_prime_UTR | 15.0% |
| !!! | GAAATTATGATTTTAGATTA+TGG | + | chr8_1:31430433-31430452 | Msa1189540:three_prime_UTR | 15.0% |
| !! | TTATAAACAGATTGTGAATA+TGG | - | chr8_1:31428019-31428038 | None:intergenic | 20.0% |
| !! | CAGATATATCAAACAAAATA+AGG | - | chr8_1:31428183-31428202 | None:intergenic | 20.0% |
| !!! | AATCATCAATTTTTTTACCA+AGG | - | chr8_1:31428619-31428638 | None:intergenic | 20.0% |
| !!! | ACTTTTTATGTATTATAGCT+GGG | + | chr8_1:31428691-31428710 | Msa1189540:intron | 20.0% |
| !!! | TTGTATGATATTTTGTATTC+TGG | + | chr8_1:31429102-31429121 | Msa1189540:intron | 20.0% |
| !! | GATTTCATTAAATTTGATGT+TGG | + | chr8_1:31429904-31429923 | Msa1189540:CDS | 20.0% |
| ! | CAATTATTCTAGACAAAGAT+CGG | - | chr8_1:31428569-31428588 | None:intergenic | 25.0% |
| !! | GACTTTTTATGTATTATAGC+TGG | + | chr8_1:31428690-31428709 | Msa1189540:intron | 25.0% |
| !!! | ATGTTTGTATAGAGTATTGA+AGG | + | chr8_1:31428731-31428750 | Msa1189540:intron | 25.0% |
| !!! | TGTTTGTATAGAGTATTGAA+GGG | + | chr8_1:31428732-31428751 | Msa1189540:intron | 25.0% |
| ! | TCAAGCTTATGCAAATAAAT+AGG | + | chr8_1:31428776-31428795 | Msa1189540:intron | 25.0% |
| ! | ATGCAAATAAATAGGTTACA+AGG | + | chr8_1:31428784-31428803 | Msa1189540:intron | 25.0% |
| ! | CAAAATAAGCATAATCCAAA+CGG | + | chr8_1:31428911-31428930 | Msa1189540:intron | 25.0% |
| ! | AAAATAAGCATAATCCAAAC+GGG | + | chr8_1:31428912-31428931 | Msa1189540:intron | 25.0% |
| ! | TTGTCTTCAGAAAAAATCAT+GGG | - | chr8_1:31428953-31428972 | None:intergenic | 25.0% |
| ! | TTTGTCTTCAGAAAAAATCA+TGG | - | chr8_1:31428954-31428973 | None:intergenic | 25.0% |
| !!! | ATTTTTTCTGAAGACAAAAC+AGG | + | chr8_1:31428956-31428975 | Msa1189540:intron | 25.0% |
| ! | ATGAAAAACATTGCAAATAC+TGG | - | chr8_1:31429030-31429049 | None:intergenic | 25.0% |
| ! | CATATGCAGTAATCAAATAA+AGG | - | chr8_1:31429305-31429324 | None:intergenic | 25.0% |
| ! | TACATAAATCTTATTCGTGT+CGG | - | chr8_1:31429469-31429488 | None:intergenic | 25.0% |
| ! | TATAGTATTTAATTATGCGC+CGG | + | chr8_1:31429487-31429506 | Msa1189540:intron | 25.0% |
| ! | TAATAACATGGACATGAAAA+TGG | - | chr8_1:31429648-31429667 | None:intergenic | 25.0% |
| ! | GTCCATGTTATTATATGAAT+TGG | + | chr8_1:31429655-31429674 | Msa1189540:intron | 25.0% |
| ! | CTCCAATTCATATAATAACA+TGG | - | chr8_1:31429660-31429679 | None:intergenic | 25.0% |
| ! | GCAAACAAAATATGTTTACA+AGG | - | chr8_1:31429689-31429708 | None:intergenic | 25.0% |
| !! | TTTTATAATCTGAGCAACTT+TGG | + | chr8_1:31430273-31430292 | Msa1189540:three_prime_UTR | 25.0% |
| !!! | GTTTTTGTTATTATTCTAGC+TGG | + | chr8_1:31430327-31430346 | Msa1189540:three_prime_UTR | 25.0% |
| ! | AAAACAAAATCAAAAAGGCA+TGG | - | chr8_1:31430525-31430544 | None:intergenic | 25.0% |
| ! | GAGGTAAAACAAAATCAAAA+AGG | - | chr8_1:31430530-31430549 | None:intergenic | 25.0% |
| CTGTTTAGCATAAAATTCAG+TGG | - | chr8_1:31428051-31428070 | None:intergenic | 30.0% | |
| AAACAAAATAAGGACGTGTT+TGG | - | chr8_1:31428173-31428192 | None:intergenic | 30.0% | |
| GATATATCTGTGAATGTAAC+AGG | + | chr8_1:31428193-31428212 | Msa1189540:intron | 30.0% | |
| ! | GATTGATGTGATTTTTGTGT+AGG | + | chr8_1:31428351-31428370 | Msa1189540:intron | 30.0% |
| TAGAAACTTATGAGTAGTAC+TGG | + | chr8_1:31428858-31428877 | Msa1189540:intron | 30.0% | |
| ! | TTTGCAATGTTTTTCATGTC+TGG | + | chr8_1:31429033-31429052 | Msa1189540:intron | 30.0% |
| TTCCTTGTATATGATGTACA+TGG | + | chr8_1:31429728-31429747 | Msa1189540:intron | 30.0% | |
| ! | AAGAACAGAGAAAAGCATAA+GGG | + | chr8_1:31429979-31429998 | Msa1189540:CDS | 30.0% |
| ! | AGTTGCTGCTTAAATATCTA+TGG | + | chr8_1:31430179-31430198 | Msa1189540:exon | 30.0% |
| ! | ATTCTAGCTGGATATTGTAA+TGG | + | chr8_1:31430339-31430358 | Msa1189540:three_prime_UTR | 30.0% |
| !!! | TGGTGATTGTTTTGAAATCA+AGG | - | chr8_1:31430505-31430524 | None:intergenic | 30.0% |
| !! | GATTGAAGAAGCATTTGAAG+AGG | + | chr8_1:31428222-31428241 | Msa1189540:CDS | 35.0% |
| CATTGGATGCTTGACAAATT+GGG | + | chr8_1:31428260-31428279 | Msa1189540:CDS | 35.0% | |
| TTTCGCAAAATCAGAATGAG+TGG | - | chr8_1:31428421-31428440 | None:intergenic | 35.0% | |
| TGAGAATAGCGATAACTTCA+CGG | - | chr8_1:31428468-31428487 | None:intergenic | 35.0% | |
| ! | AGCTGGGTATTGTAAGTAAA+AGG | + | chr8_1:31428707-31428726 | Msa1189540:intron | 35.0% |
| TGAACTAAGCAGAATCCAAA+CGG | - | chr8_1:31428759-31428778 | None:intergenic | 35.0% | |
| ATCATGGGATTCCATTATTC+AGG | - | chr8_1:31428938-31428957 | None:intergenic | 35.0% | |
| !! | TGACTCATTTGATTTGTCTG+TGG | + | chr8_1:31429136-31429155 | Msa1189540:intron | 35.0% |
| !!! | GGAAGCTCTCATTTGTTTTA+GGG | - | chr8_1:31429217-31429236 | None:intergenic | 35.0% |
| CTTTGGTATCATAAAGCAGA+CGG | - | chr8_1:31429238-31429257 | None:intergenic | 35.0% | |
| TTCATGATTGCTATGAAGCA+CGG | + | chr8_1:31429394-31429413 | Msa1189540:intron | 35.0% | |
| TACATTCATGATGTGAAGCA+CGG | - | chr8_1:31429555-31429574 | None:intergenic | 35.0% | |
| TGCCATGTACATCATATACA+AGG | - | chr8_1:31429733-31429752 | None:intergenic | 35.0% | |
| CATCATAGGTGTTAAGGTAT+GGG | - | chr8_1:31429804-31429823 | None:intergenic | 35.0% | |
| ! | CAAGAACAGAGAAAAGCATA+AGG | + | chr8_1:31429978-31429997 | Msa1189540:CDS | 35.0% |
| AATGTGTTCACTATTGGCAA+GGG | + | chr8_1:31430063-31430082 | Msa1189540:CDS | 35.0% | |
| TATTAAGCTTACAGTCATCG+AGG | + | chr8_1:31430122-31430141 | Msa1189540:CDS | 35.0% | |
| GAACTAGAAGTTGAAGTTGA+GGG | - | chr8_1:31430306-31430325 | None:intergenic | 35.0% | |
| AGAACTAGAAGTTGAAGTTG+AGG | - | chr8_1:31430307-31430326 | None:intergenic | 35.0% | |
| GAAATCAAGGCTTCAGAATT+GGG | - | chr8_1:31430492-31430511 | None:intergenic | 35.0% | |
| TGAAATCAAGGCTTCAGAAT+TGG | - | chr8_1:31430493-31430512 | None:intergenic | 35.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | - | chr8_1:31428257-31428276 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | - | chr8_1:31428258-31428277 | None:intergenic | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | + | chr8_1:31428259-31428278 | Msa1189540:CDS | 40.0% | |
| AGACATTCCCTAGATTTGTG+TGG | - | chr8_1:31428397-31428416 | None:intergenic | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | + | chr8_1:31428532-31428551 | Msa1189540:CDS | 40.0% | |
| !! | TTTGCGCAGTTAATTTGCCT+TGG | + | chr8_1:31428599-31428618 | Msa1189540:intron | 40.0% |
| GAACTAAGCAGAATCCAAAC+GGG | - | chr8_1:31428758-31428777 | None:intergenic | 40.0% | |
| TTAGGGATTGAGACAACATC+TGG | - | chr8_1:31429200-31429219 | None:intergenic | 40.0% | |
| !! | CGGAAGCTCTCATTTGTTTT+AGG | - | chr8_1:31429218-31429237 | None:intergenic | 40.0% |
| CGTCTGCTTTATGATACCAA+AGG | + | chr8_1:31429236-31429255 | Msa1189540:CDS | 40.0% | |
| TATGAAGCACGGATACTGAT+AGG | + | chr8_1:31429405-31429424 | Msa1189540:intron | 40.0% | |
| ATGAAGCACGGATACTGATA+GGG | + | chr8_1:31429406-31429425 | Msa1189540:intron | 40.0% | |
| ! | ATTTAATTATGCGCCGGTGT+TGG | + | chr8_1:31429493-31429512 | Msa1189540:intron | 40.0% |
| AAGGTTCGTTCAGTGCAATT+CGG | + | chr8_1:31429766-31429785 | Msa1189540:CDS | 40.0% | |
| CCATCATAGGTGTTAAGGTA+TGG | - | chr8_1:31429805-31429824 | None:intergenic | 40.0% | |
| CCATACCTTAACACCTATGA+TGG | + | chr8_1:31429802-31429821 | Msa1189540:CDS | 40.0% | |
| TGATGTTGGGAATGTCGTTA+TGG | + | chr8_1:31429918-31429937 | Msa1189540:CDS | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | + | chr8_1:31430057-31430076 | Msa1189540:CDS | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | + | chr8_1:31430062-31430081 | Msa1189540:CDS | 40.0% | |
| AGCTTAATACCCTTACCCTT+GGG | - | chr8_1:31430111-31430130 | None:intergenic | 40.0% | |
| AAGCTTAATACCCTTACCCT+TGG | - | chr8_1:31430112-31430131 | None:intergenic | 40.0% | |
| TTACCTCATGTCAATGCTCA+AGG | + | chr8_1:31430543-31430562 | Msa1189540:three_prime_UTR | 40.0% | |
| CTGTGAATGTAACAGGCTAG+AGG | + | chr8_1:31428200-31428219 | Msa1189540:intron | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | - | chr8_1:31428256-31428275 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | + | chr8_1:31428263-31428282 | Msa1189540:CDS | 45.0% | |
| GTCAGGACCACACAAATCTA+GGG | + | chr8_1:31428387-31428406 | Msa1189540:CDS | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | + | chr8_1:31428523-31428542 | Msa1189540:CDS | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | + | chr8_1:31428531-31428550 | Msa1189540:CDS | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | - | chr8_1:31428541-31428560 | None:intergenic | 45.0% | |
| ATCCAAACGGGCCTGAATAA+TGG | + | chr8_1:31428924-31428943 | Msa1189540:intron | 45.0% | |
| TTCCATTATTCAGGCCCGTT+TGG | - | chr8_1:31428929-31428948 | None:intergenic | 45.0% | |
| AGTCAGAGATGATGAGGCTA+AGG | + | chr8_1:31429277-31429296 | Msa1189540:CDS | 45.0% | |
| ACTGATAGGGACACACATCA+CGG | + | chr8_1:31429419-31429438 | Msa1189540:intron | 45.0% | |
| AGGTTCGTTCAGTGCAATTC+GGG | + | chr8_1:31429767-31429786 | Msa1189540:CDS | 45.0% | |
| TGCGACCATCATAGGTGTTA+AGG | - | chr8_1:31429810-31429829 | None:intergenic | 45.0% | |
| GGCTAATGACACCATCAAGT+TGG | + | chr8_1:31429858-31429877 | Msa1189540:CDS | 45.0% | |
| !! | TGACACCATCAAGTTGGATC+TGG | + | chr8_1:31429864-31429883 | Msa1189540:CDS | 45.0% |
| TTCCTCCAGATCCAACTTGA+TGG | - | chr8_1:31429872-31429891 | None:intergenic | 45.0% | |
| GGGAATGTCGTTATGGTTAC+CGG | + | chr8_1:31429925-31429944 | Msa1189540:CDS | 45.0% | |
| AATGTCGTTATGGTTACCGG+TGG | + | chr8_1:31429928-31429947 | Msa1189540:CDS | 45.0% | |
| GTTACCGGTGGTAAGAATAG+AGG | + | chr8_1:31429940-31429959 | Msa1189540:CDS | 45.0% | |
| ACGTCCTCTATTCTTACCAC+CGG | - | chr8_1:31429947-31429966 | None:intergenic | 45.0% | |
| GGTAAGAATAGAGGACGTGT+TGG | + | chr8_1:31429949-31429968 | Msa1189540:CDS | 45.0% | |
| ! | ATTTGAGACAATCCACGTGC+AGG | + | chr8_1:31430005-31430024 | Msa1189540:CDS | 45.0% |
| TCATGAGTTTGCAACTCGTC+TGG | + | chr8_1:31430038-31430057 | Msa1189540:CDS | 45.0% | |
| GTATCTCTTCCCAAGGGTAA+GGG | + | chr8_1:31430099-31430118 | Msa1189540:CDS | 45.0% | |
| TTACAGTCATCGAGGAAGCT+AGG | + | chr8_1:31430130-31430149 | Msa1189540:CDS | 45.0% | |
| GCTCTCGATATGTCATCAAC+TGG | - | chr8_1:31430412-31430431 | None:intergenic | 45.0% | |
| AGGCTTCAGAATTGGGCATT+AGG | - | chr8_1:31430485-31430504 | None:intergenic | 45.0% | |
| TAATCTCCAACCAGGTGACT+AGG | - | chr8_1:31430577-31430596 | None:intergenic | 45.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | - | chr8_1:31428255-31428274 | None:intergenic | 50.0% | |
| GATTTGTGTGGTCCTGACGA+GGG | - | chr8_1:31428385-31428404 | None:intergenic | 50.0% | |
| AGATTTGTGTGGTCCTGACG+AGG | - | chr8_1:31428386-31428405 | None:intergenic | 50.0% | |
| CGTCAGGACCACACAAATCT+AGG | + | chr8_1:31428386-31428405 | Msa1189540:CDS | 50.0% | |
| CAGCGACATGTCCTTGTTGA+CGG | + | chr8_1:31428490-31428509 | Msa1189540:CDS | 50.0% | |
| TCCTTGTTGACGGCAAAGTC+AGG | + | chr8_1:31428500-31428519 | Msa1189540:CDS | 50.0% | |
| TCCTGACTTTGCCGTCAACA+AGG | - | chr8_1:31428504-31428523 | None:intergenic | 50.0% | |
| !! | AGAGTATTGAAGGGCCCGTT+TGG | + | chr8_1:31428741-31428760 | Msa1189540:intron | 50.0% |
| CATCTCTGACTGAGTGGAGA+CGG | - | chr8_1:31429268-31429287 | None:intergenic | 50.0% | |
| CCTCATCATCTCTGACTGAG+TGG | - | chr8_1:31429274-31429293 | None:intergenic | 50.0% | |
| CCACTCAGTCAGAGATGATG+AGG | + | chr8_1:31429271-31429290 | Msa1189540:CDS | 50.0% | |
| TGTGAAGCACGGACACTACT+CGG | - | chr8_1:31429544-31429563 | None:intergenic | 50.0% | |
| ATGGCAGTTCAAGCTCTGCA+AGG | + | chr8_1:31429747-31429766 | Msa1189540:intron | 50.0% | |
| TCAGTGCAATTCGGGCAGAA+AGG | + | chr8_1:31429775-31429794 | Msa1189540:CDS | 50.0% | |
| ! | TGTCATTAGCCCTGATGACG+GGG | - | chr8_1:31429849-31429868 | None:intergenic | 50.0% |
| ! | GTGTCATTAGCCCTGATGAC+GGG | - | chr8_1:31429850-31429869 | None:intergenic | 50.0% |
| !! | GGTGTCATTAGCCCTGATGA+CGG | - | chr8_1:31429851-31429870 | None:intergenic | 50.0% |
| !! | CACCATCAAGTTGGATCTGG+AGG | + | chr8_1:31429867-31429886 | Msa1189540:CDS | 50.0% |
| CCATGGGTATCTCTTCCCAA+GGG | + | chr8_1:31430093-31430112 | Msa1189540:CDS | 50.0% | |
| GGTATCTCTTCCCAAGGGTA+AGG | + | chr8_1:31430098-31430117 | Msa1189540:CDS | 50.0% | |
| TCATCGAGGAAGCTAGGAAG+AGG | + | chr8_1:31430136-31430155 | Msa1189540:CDS | 50.0% | |
| CATCGAGGAAGCTAGGAAGA+GGG | + | chr8_1:31430137-31430156 | Msa1189540:CDS | 50.0% | |
| CAGAATTGGGCATTAGGCAG+AGG | - | chr8_1:31430479-31430498 | None:intergenic | 50.0% | |
| !! | GTGCCTTGAGCATTGACATG+AGG | - | chr8_1:31430549-31430568 | None:intergenic | 50.0% |
| TAGGCTCCAAAACCCTCGTC+AGG | + | chr8_1:31428370-31428389 | Msa1189540:intron | 55.0% | |
| ! | TGTGGTCCTGACGAGGGTTT+TGG | - | chr8_1:31428379-31428398 | None:intergenic | 55.0% |
| TGACTGAGTGGAGACGGAAG+CGG | - | chr8_1:31429262-31429281 | None:intergenic | 55.0% | |
| CACATCACGGACACACGTCA+CGG | + | chr8_1:31429432-31429451 | Msa1189540:intron | 55.0% | |
| CCAGTGTCAGAGTCCAACAC+CGG | - | chr8_1:31429509-31429528 | None:intergenic | 55.0% | |
| GCACGGACACTACTCGGTTT+AGG | - | chr8_1:31429538-31429557 | None:intergenic | 55.0% | |
| ! | GCGGATTGTGCGACCATCAT+AGG | - | chr8_1:31429818-31429837 | None:intergenic | 55.0% |
| ATCCACGTGCAGGATGCTAC+TGG | + | chr8_1:31430015-31430034 | Msa1189540:CDS | 55.0% | |
| ! | TTGGCAAGGGCACAAAGCCA+TGG | + | chr8_1:31430076-31430095 | Msa1189540:CDS | 55.0% |
| ! | TGGCAAGGGCACAAAGCCAT+GGG | + | chr8_1:31430077-31430096 | Msa1189540:CDS | 55.0% |
| GCCATGGGTATCTCTTCCCA+AGG | + | chr8_1:31430092-31430111 | Msa1189540:CDS | 55.0% | |
| CCCTTGGGAAGAGATACCCA+TGG | - | chr8_1:31430096-31430115 | None:intergenic | 55.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | + | chr8_1:31428243-31428262 | Msa1189540:CDS | 60.0% | |
| ! | CCGGTGTTGGACTCTGACAC+TGG | + | chr8_1:31429506-31429525 | Msa1189540:intron | 60.0% |
| !! | TGATGACGGGGTCTGGGTAG+CGG | - | chr8_1:31429837-31429856 | None:intergenic | 60.0% |
| CTACCCAGACCCCGTCATCA+GGG | + | chr8_1:31429837-31429856 | Msa1189540:CDS | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | - | chr8_1:31429843-31429862 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | - | chr8_1:31429844-31429863 | None:intergenic | 60.0% |
| GACCAGTAGCATCCTGCACG+TGG | - | chr8_1:31430020-31430039 | None:intergenic | 60.0% | |
| AGCTAGGAAGAGGGCTGCTG+CGG | + | chr8_1:31430146-31430165 | Msa1189540:CDS | 60.0% | |
| CCAACCAGGTGACTAGGCAC+TGG | - | chr8_1:31430571-31430590 | None:intergenic | 60.0% | |
| CCAGTGCCTAGTCACCTGGT+TGG | + | chr8_1:31430568-31430587 | Msa1189540:three_prime_UTR | 60.0% | |
| GTGGAGACGGAAGCGGCCTT+TGG | - | chr8_1:31429255-31429274 | None:intergenic | 65.0% | |
| GCTACCCAGACCCCGTCATC+AGG | + | chr8_1:31429836-31429855 | Msa1189540:CDS | 65.0% | |
| GGCACCAGTGCCTAGTCACC+TGG | + | chr8_1:31430564-31430583 | Msa1189540:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 31428008 | 31430600 | 31428008 | ID=Msa1189540;Name=Msa1189540 |
| chr8_1 | mRNA | 31428008 | 31430600 | 31428008 | ID=Msa1189540-mRNA-1;Parent=Msa1189540;Name=Msa1189540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.75|0.8|0.8|1|1|5|409|265 |
| chr8_1 | exon | 31428008 | 31428010 | 31428008 | ID=Msa1189540-mRNA-1:exon:10806;Parent=Msa1189540-mRNA-1 |
| chr8_1 | exon | 31428215 | 31428292 | 31428215 | ID=Msa1189540-mRNA-1:exon:10807;Parent=Msa1189540-mRNA-1 |
| chr8_1 | exon | 31428373 | 31428553 | 31428373 | ID=Msa1189540-mRNA-1:exon:10808;Parent=Msa1189540-mRNA-1 |
| chr8_1 | exon | 31429201 | 31429298 | 31429201 | ID=Msa1189540-mRNA-1:exon:10809;Parent=Msa1189540-mRNA-1 |
| chr8_1 | exon | 31429754 | 31430600 | 31429754 | ID=Msa1189540-mRNA-1:exon:10810;Parent=Msa1189540-mRNA-1 |
| chr8_1 | CDS | 31428008 | 31428010 | 31428008 | ID=Msa1189540-mRNA-1:cds;Parent=Msa1189540-mRNA-1 |
| chr8_1 | CDS | 31428215 | 31428292 | 31428215 | ID=Msa1189540-mRNA-1:cds;Parent=Msa1189540-mRNA-1 |
| chr8_1 | CDS | 31428373 | 31428553 | 31428373 | ID=Msa1189540-mRNA-1:cds;Parent=Msa1189540-mRNA-1 |
| chr8_1 | CDS | 31429201 | 31429298 | 31429201 | ID=Msa1189540-mRNA-1:cds;Parent=Msa1189540-mRNA-1 |
| chr8_1 | CDS | 31429754 | 31430191 | 31429754 | ID=Msa1189540-mRNA-1:cds;Parent=Msa1189540-mRNA-1 |
| chr8_1 | three_prime_UTR | 31430192 | 31430600 | 31430192 | ID=Msa1189540-mRNA-1:three_prime_utr;Parent=Msa1189540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
