AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1326990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326990 MtrunA17_Chr8g0357801 82.456 456 52 4 1 430 1 454 0.0 754
Msa1326990 MtrunA17_Chr8g0357881 76.484 455 78 3 1 430 7 457 0.0 672
Msa1326990 MtrunA17_Chr8g0358031 68.478 460 114 5 1 430 2 460 0.0 640
Msa1326990 MtrunA17_Chr8g0358071 66.885 459 120 6 1 430 2 457 0.0 626
Msa1326990 MtrunA17_Chr8g0357961 61.734 473 130 8 1 430 1 465 0.0 571
Msa1326990 MtrunA17_Chr8g0357991 63.080 474 123 9 1 430 1 466 0.0 556
Msa1326990 MtrunA17_Chr8g0358081 62.963 459 124 8 1 430 1 442 0.0 549
Msa1326990 MtrunA17_Chr8g0358101 62.745 459 128 7 1 430 1 445 0.0 547
Msa1326990 MtrunA17_Chr8g0358121 63.696 460 120 8 1 430 1 443 0.0 541
Msa1326990 MtrunA17_Chr8g0357931 62.092 459 133 8 1 430 1 447 0.0 541
Msa1326990 MtrunA17_Chr8g0358151 68.286 391 93 6 1 365 1 386 0.0 530
Msa1326990 MtrunA17_Chr8g0357981 63.605 294 95 4 141 430 1 286 9.31e-128 382
Msa1326990 MtrunA17_Chr1g0191111 67.843 255 57 5 1 234 16 266 2.45e-115 338
Msa1326990 MtrunA17_Chr8g0357631 40.481 457 219 13 9 430 10 448 2.56e-94 300
Msa1326990 MtrunA17_Chr8g0357691 40.257 467 231 13 1 430 3 458 1.18e-93 299
Msa1326990 MtrunA17_Chr8g0357761 41.015 473 223 13 1 430 1 460 9.39e-92 294
Msa1326990 MtrunA17_Chr8g0357681 42.222 405 181 12 1 365 3 394 2.85e-91 281
Msa1326990 MtrunA17_Chr8g0357711 39.741 463 227 13 7 430 8 457 1.56e-85 278
Msa1326990 MtrunA17_Chr8g0357651 38.478 460 230 13 7 430 8 450 4.18e-82 268
Msa1326990 MtrunA17_Chr6g0470621 73.611 144 38 0 141 284 2 145 1.92e-76 234
Msa1326990 MtrunA17_Chr8g0358051 64.045 178 45 3 1 160 1 177 3.54e-70 219
Msa1326990 MtrunA17_Chr8g0358131 83.333 102 16 1 57 158 1 101 6.55e-56 180
Msa1326990 MtrunA17_Chr8g0357821 47.000 200 68 7 7 172 9 204 5.16e-40 142
Msa1326990 MtrunA17_Chr8g0357971 64.486 107 13 1 1 82 1 107 7.02e-37 130
Msa1326990 MtrunA17_Chr8g0357831 39.884 173 101 2 260 430 1 172 2.43e-29 119
Msa1326990 MtrunA17_Chr2g0280681 25.679 405 240 12 55 405 78 475 1.51e-24 106
Msa1326990 MtrunA17_Chr4g0048641 24.665 373 232 12 53 396 96 448 4.80e-23 102
Msa1326990 MtrunA17_Chr4g0048721 25.416 421 228 16 53 399 78 486 1.88e-21 96.7
Msa1326990 MtrunA17_Chr8g0361141 35.484 155 88 4 55 204 82 229 1.54e-19 91.3
Msa1326990 MtrunA17_Chr4g0048741 24.880 418 226 18 53 396 89 492 1.83e-19 91.3
Msa1326990 MtrunA17_Chr8g0361251 26.291 426 226 17 53 407 72 480 2.78e-19 90.5
Msa1326990 MtrunA17_Chr8g0361301 23.742 497 288 17 1 411 1 492 4.10e-19 90.1
Msa1326990 MtrunA17_Chr8g0361261 23.185 496 292 15 1 411 32 523 1.05e-18 89.0
Msa1326990 MtrunA17_Chr4g0042401 24.648 426 233 16 55 410 75 482 9.32e-18 85.9
Msa1326990 MtrunA17_Chr4g0042441 25.060 415 229 17 55 402 74 473 1.19e-17 85.5
Msa1326990 MtrunA17_Chr4g0048761 32.653 147 90 3 53 193 89 232 1.93e-17 84.7
Msa1326990 MtrunA17_Chr4g0042421 25.547 411 224 17 55 394 73 472 2.48e-17 84.3
Msa1326990 MtrunA17_Chr4g0048801 35.545 211 118 10 33 231 50 254 2.80e-17 84.3
Msa1326990 MtrunA17_Chr3g0084621 25.172 437 259 17 53 430 77 504 5.35e-17 83.2
Msa1326990 MtrunA17_Chr4g0042381 28.182 330 182 15 55 337 74 395 7.58e-17 83.2
Msa1326990 MtrunA17_Chr8g0361281 22.500 440 269 13 53 423 70 506 9.58e-17 82.8
Msa1326990 MtrunA17_Chr8g0361441 27.811 338 183 12 53 337 75 404 1.15e-16 82.4
Msa1326990 MtrunA17_Chr2g0318811 23.155 393 247 13 53 396 71 457 1.22e-16 82.4
Msa1326990 MtrunA17_Chr4g0048651 35.374 147 86 4 53 193 94 237 1.32e-16 81.6
Msa1326990 MtrunA17_Chr8g0361311 26.979 341 181 12 53 337 72 400 1.49e-16 81.6
Msa1326990 MtrunA17_Chr8g0361151 37.857 140 76 3 55 190 83 215 1.62e-16 81.3
Msa1326990 MtrunA17_Chr5g0422921 25.352 426 230 18 55 410 69 476 1.83e-16 82.0
Msa1326990 MtrunA17_Chr4g0048691 30.000 180 114 5 53 225 94 268 3.07e-16 80.9
Msa1326990 MtrunA17_Chr4g0042391 26.923 338 185 14 55 342 75 400 3.08e-16 81.3
Msa1326990 MtrunA17_Chr3g0093161 24.499 449 234 17 55 429 72 489 4.50e-16 80.9
Msa1326990 MtrunA17_Chr5g0428111 24.439 401 219 19 55 388 80 463 4.68e-16 80.5
Msa1326990 MtrunA17_Chr2g0280841 25.071 351 182 15 55 340 79 413 1.33e-15 78.6
Msa1326990 MtrunA17_Chr4g0042351 36.216 185 102 8 55 233 75 249 1.63e-15 79.0
Msa1326990 MtrunA17_Chr3g0084441 23.112 437 271 14 53 430 77 507 1.82e-15 79.0
Msa1326990 MtrunA17_Chr4g0055021 36.301 146 82 5 53 193 73 212 4.87e-15 76.6
Msa1326990 MtrunA17_Chr3g0084491 23.981 417 250 16 53 414 90 494 6.19e-15 77.0
Msa1326990 MtrunA17_Chr4g0048791 23.529 408 241 16 48 389 83 485 7.50e-15 77.0
Msa1326990 MtrunA17_Chr5g0428101 25.526 380 218 17 55 377 79 450 1.02e-14 76.6
Msa1326990 MtrunA17_Chr2g0323301 30.220 182 119 6 53 229 75 253 2.33e-14 75.5
Msa1326990 MtrunA17_Chr3g0084411 22.146 438 270 16 53 430 74 500 2.84e-14 75.1
Msa1326990 MtrunA17_Chr4g0023071 29.834 181 121 5 53 229 75 253 3.52e-14 74.7
Msa1326990 MtrunA17_Chr2g0280711 23.093 485 271 21 13 428 62 513 3.81e-14 74.7
Msa1326990 MtrunA17_Chr8g0360201 33.333 126 79 2 87 210 3 125 1.15e-13 73.2
Msa1326990 MtrunA17_Chr3g0084451 23.846 390 234 16 53 390 77 455 1.43e-13 72.8
Msa1326990 MtrunA17_Chr2g0280701 22.748 444 263 19 53 425 71 505 1.65e-13 72.8
Msa1326990 MtrunA17_Chr3g0098791 22.989 435 268 14 53 430 79 503 3.00e-13 71.6
Msa1326990 MtrunA17_Chr7g0236511 22.821 390 237 12 53 387 79 459 9.57e-13 70.5
Msa1326990 MtrunA17_Chr7g0236341 23.834 386 235 15 53 388 73 449 9.92e-13 70.1
Msa1326990 MtrunA17_Chr7g0236651 28.713 202 137 4 53 252 71 267 1.02e-12 70.1
Msa1326990 MtrunA17_Chr7g0236641 32.867 143 86 4 55 193 75 211 1.05e-12 70.1
Msa1326990 MtrunA17_Chr7g0236161 26.136 176 125 3 53 227 75 246 1.45e-12 69.7
Msa1326990 MtrunA17_Chr7g0236201 26.136 176 125 3 53 227 75 246 1.52e-12 69.7
Msa1326990 MtrunA17_Chr7g0236121 26.136 176 125 3 53 227 75 246 1.69e-12 69.7
Msa1326990 MtrunA17_Chr2g0280791 22.877 424 229 15 55 401 73 475 1.81e-12 69.3
Msa1326990 MtrunA17_Chr7g0236691 33.562 146 85 5 53 193 73 211 2.58e-12 68.9
Msa1326990 MtrunA17_Chr8g0361431 29.189 185 122 4 48 231 80 256 3.10e-12 68.6
Msa1326990 MtrunA17_Chr4g0048631 24.943 437 244 19 42 408 62 484 7.73e-12 67.4
Msa1326990 MtrunA17_Chr2g0280691 34.400 125 74 4 55 174 75 196 1.57e-11 66.6
Msa1326990 MtrunA17_Chr2g0280801 22.877 424 233 18 55 403 78 482 2.27e-11 65.9
Msa1326990 MtrunA17_Chr3g0078551 26.149 348 176 13 55 334 77 411 2.63e-11 65.9
Msa1326990 MtrunA17_Chr7g0236561 28.713 202 129 6 53 248 53 245 3.39e-11 65.5
Msa1326990 MtrunA17_Chr7g0236551 32.500 120 73 3 53 170 73 186 8.10e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326990 AT5G18470.1 33.333 315 178 10 55 339 87 399 4.91e-39 145
Msa1326990 AT3G16030.4 28.205 390 223 15 46 386 72 453 1.56e-31 127
Msa1326990 AT3G16030.3 28.205 390 223 15 46 386 72 453 1.67e-31 127
Msa1326990 AT3G16030.8 28.205 390 223 15 46 386 72 453 1.67e-31 127
Msa1326990 AT3G16030.5 28.205 390 223 15 46 386 72 453 1.67e-31 127
Msa1326990 AT3G16030.7 28.205 390 223 15 46 386 72 453 1.88e-31 127
Msa1326990 AT3G16030.6 28.205 390 223 15 46 386 72 453 2.11e-31 127
Msa1326990 AT3G16030.1 28.947 380 206 14 55 390 74 433 4.88e-31 126
Msa1326990 AT1G67520.1 30.795 302 160 10 55 334 79 353 8.61e-26 110
Msa1326990 AT1G67520.2 28.371 356 200 12 55 387 79 402 1.04e-25 110
Msa1326990 AT1G67520.6 30.097 309 169 9 55 342 86 368 1.56e-25 110
Msa1326990 AT1G67520.3 30.097 309 169 9 55 342 79 361 1.77e-25 109
Msa1326990 AT1G67520.4 32.841 271 151 10 55 299 79 344 7.05e-25 108
Msa1326990 AT4G21380.2 25.432 405 226 16 53 396 79 468 9.80e-23 101
Msa1326990 AT4G21380.1 25.307 407 228 16 53 398 79 470 1.03e-22 101
Msa1326990 AT3G16030.2 26.623 308 176 12 123 386 8 309 1.88e-20 94.7
Msa1326990 AT3G12000.1 24.781 343 195 12 53 341 86 419 2.10e-20 93.6
Msa1326990 AT1G65790.3 24.747 396 236 16 53 396 77 462 9.91e-20 92.0
Msa1326990 AT1G65790.2 24.747 396 236 16 53 396 77 462 9.91e-20 92.0
Msa1326990 AT1G65790.1 24.623 398 238 16 53 398 77 464 1.07e-19 92.4
Msa1326990 AT4G27290.2 24.222 450 249 21 53 429 72 502 1.12e-19 92.4
Msa1326990 AT1G65800.2 23.129 441 264 16 53 430 77 505 6.24e-17 83.6
Msa1326990 AT4G27290.1 25.723 346 181 15 53 337 72 402 8.82e-17 83.2
Msa1326990 AT1G65800.1 23.218 435 271 16 53 430 77 505 1.07e-16 83.2
Msa1326990 AT1G11410.1 23.702 443 260 17 53 428 70 501 1.50e-16 82.8
Msa1326990 AT1G11410.3 23.702 443 260 17 53 428 46 477 1.71e-16 82.4
Msa1326990 AT1G11410.4 23.702 443 260 17 53 428 77 508 1.77e-16 82.4
Msa1326990 AT1G61610.1 24.480 433 230 19 48 404 72 483 6.11e-15 77.8
Msa1326990 AT1G61610.2 24.480 433 230 19 48 404 72 483 7.94e-15 77.0
Msa1326990 AT1G11340.1 32.804 189 108 8 53 231 67 246 1.67e-14 76.3
Msa1326990 AT2G19130.1 27.027 185 129 5 53 232 70 253 2.36e-14 75.9
Msa1326990 AT4G21390.2 30.570 193 118 7 41 222 62 249 2.49e-14 75.5
Msa1326990 AT1G11340.3 32.461 191 110 8 53 233 135 316 2.77e-14 75.5
Msa1326990 AT4G21390.1 30.729 192 117 7 42 222 63 249 2.77e-14 75.5
Msa1326990 AT1G11340.2 32.461 191 110 8 53 233 135 316 2.85e-14 75.5
Msa1326990 AT1G11300.2 32.022 178 109 6 53 223 75 247 1.44e-13 73.2
Msa1326990 AT1G11300.1 32.022 178 109 6 53 223 75 247 1.56e-13 73.2
Msa1326990 AT1G11410.2 23.196 388 227 14 103 428 8 386 1.81e-13 72.8
Msa1326990 AT1G11303.1 32.022 178 109 6 53 223 75 247 1.20e-12 70.5
Msa1326990 AT4G27300.1 23.626 364 209 13 33 337 53 406 4.87e-12 68.6
Msa1326990 AT1G11330.1 32.867 143 92 3 53 193 82 222 5.34e-12 68.6
Msa1326990 AT1G11330.2 32.867 143 92 3 53 193 82 222 5.59e-12 68.6
Msa1326990 AT1G11330.3 32.867 143 92 3 53 193 82 222 7.21e-12 67.8
Msa1326990 AT1G11350.1 33.562 146 88 5 53 193 70 211 2.48e-11 66.2
Msa1326990 AT4G11900.1 24.397 373 202 18 99 407 152 508 3.98e-11 65.9
Msa1326990 AT4G11900.9 24.397 373 202 18 99 407 83 439 4.31e-11 65.5
Msa1326990 AT4G11900.8 24.397 373 202 18 99 407 83 439 4.41e-11 65.5
Msa1326990 AT4G11900.6 24.728 368 197 18 104 407 157 508 4.58e-11 65.5
Msa1326990 AT4G11900.4 24.728 368 197 18 104 407 157 508 4.58e-11 65.5
Msa1326990 AT4G11900.10 24.728 368 197 18 104 407 157 508 4.63e-11 65.1
Msa1326990 AT4G11900.5 24.728 368 197 18 104 407 157 508 4.63e-11 65.1
Msa1326990 AT4G11900.7 24.397 373 202 18 99 407 152 508 4.71e-11 65.5
Msa1326990 AT4G11900.2 24.728 368 197 18 104 407 157 508 4.81e-11 65.5
Msa1326990 AT4G11900.3 24.728 368 197 18 104 407 157 508 4.81e-11 65.5

Find 98 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATGACGTTATAGATATT+TGG 0.129706 8_4:+42553189 None:intergenic
AGACTAAATCTACCTGAATT+TGG 0.226980 8_4:+42553747 None:intergenic
GGCGAAGAGTAAATGATTAT+TGG 0.245395 8_4:+42553972 None:intergenic
AATATACTCTTTGTCCCATT+TGG 0.254995 8_4:+42553882 None:intergenic
TCCCATTACGATAATATTCT+TGG 0.260771 8_4:+42553265 None:intergenic
ATTGGTGTTAATGCGGATTA+TGG 0.263973 8_4:-42554104 Msa1326990:CDS
ATAAAAGGAGTGGGCATAAT+AGG 0.278286 8_4:+42552433 None:intergenic
TATTGATATACTTATGGTTT+TGG 0.281074 8_4:-42554280 Msa1326990:CDS
GTGATGGAGGGTGCCAAAAC+TGG 0.301110 8_4:-42553440 Msa1326990:CDS
AACTGCTGAATTTAAGTCTA+TGG 0.307200 8_4:+42554049 None:intergenic
TCAAAATAGAATTTCAAAAT+AGG 0.327575 8_4:-42554001 Msa1326990:CDS
ATAATTGGTCCTTGATTTCA+TGG 0.327952 8_4:-42553785 Msa1326990:CDS
CAGAATTATAAGATGTTTCC+AGG 0.332209 8_4:-42553543 Msa1326990:CDS
AAGTTGTATTGATATACTTA+TGG 0.332444 8_4:-42554286 Msa1326990:CDS
GCTCCTTCACTACCAAATTC+AGG 0.340050 8_4:-42553759 Msa1326990:CDS
TTCGACACAAGATATTGATT+TGG 0.348295 8_4:-42553217 Msa1326990:CDS
TTGGTATATCATCCCAGTTT+TGG 0.358319 8_4:+42553427 None:intergenic
GGAGAATGAGATGCAAGATT+TGG 0.361079 8_4:-42552267 Msa1326990:CDS
GCAGCTTCCCATGAATCCTT+TGG 0.361344 8_4:-42552245 Msa1326990:CDS
CAGGTAGATTTAGTCTTGAA+TGG 0.364480 8_4:-42553740 Msa1326990:CDS
TTATAAGATGTTTCCAGGTT+GGG 0.375799 8_4:-42553538 Msa1326990:CDS
ATATACTCTTTGTCCCATTT+GGG 0.378379 8_4:+42553883 None:intergenic
CTTTGACACCAAAGGATTCA+TGG 0.382434 8_4:+42552237 None:intergenic
ATCGAAGACAATGTGACTTA+TGG 0.387844 8_4:-42553339 Msa1326990:CDS
TCCAAGAATATTATCGTAAT+GGG 0.393227 8_4:-42553266 Msa1326990:CDS
ATGGGACAAAGAGTATATTA+TGG 0.393795 8_4:-42553878 Msa1326990:CDS
CAGGTAAAAGCATGCGGATA+TGG 0.397805 8_4:-42552485 Msa1326990:CDS
TGGTTTATTCGAGAACATTC+CGG 0.397842 8_4:-42553643 Msa1326990:CDS
CTTCAACAACTTCACCCAAA+TGG 0.407409 8_4:-42553897 Msa1326990:CDS
TTGGTCCTTGATTTCATGGT+TGG 0.410421 8_4:-42553781 Msa1326990:CDS
GGTTGGGAACTGTACTCAAC+GGG 0.417102 8_4:-42553522 Msa1326990:CDS
GGGATGATATACCAACTTGT+AGG 0.427186 8_4:-42553419 Msa1326990:CDS
ATGTTCAATTGACCTTCGTT+TGG 0.434773 8_4:+42553714 None:intergenic
TTGATCCCAACGATGAAGTT+GGG 0.440820 8_4:-42553828 Msa1326990:CDS
GTGATTGTAAGCTCAGTTGT+TGG 0.445389 8_4:-42553311 Msa1326990:CDS
GATGGTTGCACTGTCGGTGT+TGG 0.448348 8_4:+42553359 None:intergenic
AGCAACGCGGCAAAGTGTAT+TGG 0.452865 8_4:-42553689 Msa1326990:CDS
GTCTTCGATGGTTGCACTGT+CGG 0.454796 8_4:+42553353 None:intergenic
TTCCAAGAATATTATCGTAA+TGG 0.455180 8_4:-42553267 Msa1326990:CDS
AGGTAGATTTAGTCTTGAAT+GGG 0.459635 8_4:-42553739 Msa1326990:CDS
TAACTCCCAACTTCATCGTT+GGG 0.459787 8_4:+42553823 None:intergenic
ATTATAAGATGTTTCCAGGT+TGG 0.460847 8_4:-42553539 Msa1326990:CDS
TTCAACAACTTCACCCAAAT+GGG 0.463790 8_4:-42553896 Msa1326990:CDS
TACACTCGTTGAACTTTCAC+CGG 0.473829 8_4:+42553624 None:intergenic
CATAGTGGCCACGGTGTTGT+TGG 0.476843 8_4:+42553941 None:intergenic
ATGGTTGCACTGTCGGTGTT+GGG 0.479909 8_4:+42553360 None:intergenic
TTTGATCCCAACGATGAAGT+TGG 0.482981 8_4:-42553829 Msa1326990:CDS
GCGAATGCAGATATGTGTTA+TGG 0.489154 8_4:-42553471 Msa1326990:CDS
GAATATTATCGTAATGGGAC+TGG 0.499051 8_4:-42553261 Msa1326990:CDS
GAGGATGCTCACTTGGTCAT+TGG 0.510552 8_4:-42554122 Msa1326990:CDS
GGAGAAACTGTGACTGCAAT+GGG 0.513641 8_4:-42553290 Msa1326990:CDS
TTAACTCCCAACTTCATCGT+TGG 0.517379 8_4:+42553822 None:intergenic
CTACCTGAATTTGGTAGTGA+AGG 0.519641 8_4:+42553756 None:intergenic
TTCAAGATCTTTGACACCAA+AGG 0.525986 8_4:+42552229 None:intergenic
GTTGGGATCAAAATGTATGT+TGG 0.534883 8_4:+42553840 None:intergenic
AGATAGCGAGGATGCTCACT+TGG 0.536440 8_4:-42554129 Msa1326990:CDS
TTTGACACCAAAGGATTCAT+GGG 0.542203 8_4:+42552238 None:intergenic
TCGCGATACATAAAAGGAGT+GGG 0.545196 8_4:+42552424 None:intergenic
TATGGATATAATAGTGATGG+AGG 0.546828 8_4:-42553453 Msa1326990:CDS
ACGGTGTTGTTGGTTGGTTG+AGG 0.549201 8_4:+42553951 None:intergenic
AGGAGCCAACCATGAAATCA+AGG 0.552362 8_4:+42553776 None:intergenic
GTGGCCACGGTGTTGTTGGT+TGG 0.552427 8_4:+42553945 None:intergenic
GGATGATATACCAACTTGTA+GGG 0.553198 8_4:-42553418 Msa1326990:CDS
GTTGAGTACAGTTCCCAACC+TGG 0.555011 8_4:+42553525 None:intergenic
CTTGGTCATTGGTGTTAATG+CGG 0.558015 8_4:-42554111 Msa1326990:CDS
AAAAGCATGCGGATATGGAT+AGG 0.561163 8_4:-42552480 Msa1326990:CDS
TCCAAATATCTATAACGTCA+TGG 0.567740 8_4:-42553190 Msa1326990:CDS
ATAAGTCACATTGTCTTCGA+TGG 0.571828 8_4:+42553341 None:intergenic
TTCGCGATACATAAAAGGAG+TGG 0.573380 8_4:+42552423 None:intergenic
AGCGGAAAACGTAGAAGCAA+TGG 0.576433 8_4:-42553663 Msa1326990:CDS
ACAAGTGATAGTTTGAAGCC+AGG 0.577293 8_4:-42554224 Msa1326990:intron
GTTACCCGTGTCTAACATAG+TGG 0.578542 8_4:+42553926 None:intergenic
ATACCAACTTGTAGGGAACC+TGG 0.581152 8_4:-42553411 Msa1326990:CDS
CAATTGAACATTAGATAGCG+AGG 0.583324 8_4:-42554141 Msa1326990:intron
TGGAGAAACTGTGACTGCAA+TGG 0.593324 8_4:-42553291 Msa1326990:CDS
TTACCATGGTGATTTAGCGT+TGG 0.596371 8_4:+42553162 None:intergenic
AACTTGTAGGGAACCTGGTG+AGG 0.606111 8_4:-42553406 Msa1326990:CDS
TGATGGAGGGTGCCAAAACT+GGG 0.606578 8_4:-42553439 Msa1326990:CDS
GGCAAAGTGTATTGGAAAAG+CGG 0.607288 8_4:-42553681 Msa1326990:CDS
CGGATTATGGCACTCAGGTG+TGG 0.608662 8_4:-42554091 Msa1326990:CDS
AGATATCAAAATTAAAAGAG+AGG 0.610420 8_4:-42552288 Msa1326990:CDS
GTTCTATCACTAGACTACTC+TGG 0.611633 8_4:-42554029 Msa1326990:CDS
TGTTATGGATATAATAGTGA+TGG 0.613097 8_4:-42553456 Msa1326990:CDS
AGGTTGGGAACTGTACTCAA+CGG 0.619367 8_4:-42553523 Msa1326990:CDS
TCACCAGGTTCCCTACAAGT+TGG 0.623848 8_4:+42553408 None:intergenic
CGTGGCCACTATGTTAGACA+CGG 0.629597 8_4:-42553931 Msa1326990:CDS
CGTGTCTAACATAGTGGCCA+CGG 0.630542 8_4:+42553932 None:intergenic
GGGATGTTAACGAGTACTGA+AGG 0.645901 8_4:-42553501 Msa1326990:CDS
ATACATTATTGTCTCTAACA+AGG 0.658701 8_4:-42553598 Msa1326990:CDS
TAATGCGGATTATGGCACTC+AGG 0.663020 8_4:-42554096 Msa1326990:CDS
TCAATGCAGGTAAAAGCATG+CGG 0.694920 8_4:-42552491 Msa1326990:intron
AATCCAACGCTAAATCACCA+TGG 0.695801 8_4:-42553165 Msa1326990:intron
CTTGAATGGGAACCAAACGA+AGG 0.698955 8_4:-42553726 Msa1326990:CDS
ATGGATATAATAGTGATGGA+GGG 0.710491 8_4:-42553452 Msa1326990:CDS
GTGGCCACTATGTTAGACAC+GGG 0.715124 8_4:-42553930 Msa1326990:CDS
CAATTGAACATCAAGCAACG+CGG 0.732121 8_4:-42553702 Msa1326990:CDS
TCAACCAACCAACAACACCG+TGG 0.752674 8_4:-42553949 Msa1326990:CDS
GTTGGGAACTGTACTCAACG+GGG 0.821563 8_4:-42553521 Msa1326990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATAGAATTTCAAAAT+AGG - chr8_4:42552530-42552549 Msa1326990:intron 15.0%
!!! ACTATACATTATTTTTGAAT+TGG + chr8_4:42553519-42553538 None:intergenic 15.0%
!!! TTGATATTATCATTTCATTT+TGG + chr8_4:42553732-42553751 None:intergenic 15.0%
!! ATATAAAGATAGAAAACAAA+GGG + chr8_4:42554209-42554228 None:intergenic 15.0%
!! AATATAAAGATAGAAAACAA+AGG + chr8_4:42554210-42554229 None:intergenic 15.0%
!! TCAAAATAGAATTTCAAAAT+AGG - chr8_4:42552530-42552549 Msa1326990:intron 15.0%
!!! ACTATACATTATTTTTGAAT+TGG + chr8_4:42553519-42553538 None:intergenic 15.0%
!!! TTGATATTATCATTTCATTT+TGG + chr8_4:42553732-42553751 None:intergenic 15.0%
!! ATATAAAGATAGAAAACAAA+GGG + chr8_4:42554209-42554228 None:intergenic 15.0%
!! AATATAAAGATAGAAAACAA+AGG + chr8_4:42554210-42554229 None:intergenic 15.0%
!!! AAGTTGTATTGATATACTTA+TGG - chr8_4:42552245-42552264 Msa1326990:CDS 20.0%
!!! TATTGATATACTTATGGTTT+TGG - chr8_4:42552251-42552270 Msa1326990:CDS 20.0%
!!! ATCTTTGATTTTAAAAGTGA+AGG + chr8_4:42552968-42552987 None:intergenic 20.0%
!! AATATCAATAAGATATCCTT+TGG - chr8_4:42553744-42553763 Msa1326990:CDS 20.0%
!! ATAACTAGTAGAAATTACAT+AGG - chr8_4:42553985-42554004 Msa1326990:CDS 20.0%
!! AGATATCAAAATTAAAAGAG+AGG - chr8_4:42554243-42554262 Msa1326990:CDS 20.0%
!!! AAGTTGTATTGATATACTTA+TGG - chr8_4:42552245-42552264 Msa1326990:CDS 20.0%
!!! TATTGATATACTTATGGTTT+TGG - chr8_4:42552251-42552270 Msa1326990:CDS 20.0%
!!! ATCTTTGATTTTAAAAGTGA+AGG + chr8_4:42552968-42552987 None:intergenic 20.0%
!! AATATCAATAAGATATCCTT+TGG - chr8_4:42553744-42553763 Msa1326990:CDS 20.0%
!! ATAACTAGTAGAAATTACAT+AGG - chr8_4:42553985-42554004 Msa1326990:CDS 20.0%
!! AGATATCAAAATTAAAAGAG+AGG - chr8_4:42554243-42554262 Msa1326990:CDS 20.0%
! ATACATTATTGTCTCTAACA+AGG - chr8_4:42552933-42552952 Msa1326990:intron 25.0%
! TGTTATGGATATAATAGTGA+TGG - chr8_4:42553075-42553094 Msa1326990:intron 25.0%
! TTCCAAGAATATTATCGTAA+TGG - chr8_4:42553264-42553283 Msa1326990:CDS 25.0%
! TCCAAGAATATTATCGTAAT+GGG - chr8_4:42553265-42553284 Msa1326990:CDS 25.0%
! TTACTAAGATGATACATATC+TGG - chr8_4:42553563-42553582 Msa1326990:CDS 25.0%
! AAGGTTTAAACATCCAAATA+GGG - chr8_4:42553664-42553683 Msa1326990:CDS 25.0%
!! ATCATTTCATTTTGGATCAA+TGG + chr8_4:42553724-42553743 None:intergenic 25.0%
! ATACCTTAAACACATTTGAA+GGG + chr8_4:42553842-42553861 None:intergenic 25.0%
!! AATGTGTTTAAGGTATGAAA+AGG - chr8_4:42553846-42553865 Msa1326990:CDS 25.0%
!!! AGCATTGTTCATTTAGTTTT+TGG + chr8_4:42553963-42553982 None:intergenic 25.0%
! AAACAAAAATATGCACGTAA+AGG - chr8_4:42554135-42554154 Msa1326990:intron 25.0%
! ATACATTATTGTCTCTAACA+AGG - chr8_4:42552933-42552952 Msa1326990:intron 25.0%
! TGTTATGGATATAATAGTGA+TGG - chr8_4:42553075-42553094 Msa1326990:intron 25.0%
! TTCCAAGAATATTATCGTAA+TGG - chr8_4:42553264-42553283 Msa1326990:CDS 25.0%
! TCCAAGAATATTATCGTAAT+GGG - chr8_4:42553265-42553284 Msa1326990:CDS 25.0%
! TTACTAAGATGATACATATC+TGG - chr8_4:42553563-42553582 Msa1326990:CDS 25.0%
! AAGGTTTAAACATCCAAATA+GGG - chr8_4:42553664-42553683 Msa1326990:CDS 25.0%
!! ATCATTTCATTTTGGATCAA+TGG + chr8_4:42553724-42553743 None:intergenic 25.0%
! ATACCTTAAACACATTTGAA+GGG + chr8_4:42553842-42553861 None:intergenic 25.0%
!! AATGTGTTTAAGGTATGAAA+AGG - chr8_4:42553846-42553865 Msa1326990:CDS 25.0%
!!! AGCATTGTTCATTTAGTTTT+TGG + chr8_4:42553963-42553982 None:intergenic 25.0%
! AAACAAAAATATGCACGTAA+AGG - chr8_4:42554135-42554154 Msa1326990:intron 25.0%
!!! TGATATACTTATGGTTTTGG+TGG - chr8_4:42552254-42552273 Msa1326990:CDS 30.0%
TTGTAATTCAATGTATCACC+TGG + chr8_4:42552328-42552347 None:intergenic 30.0%
AACTGCTGAATTTAAGTCTA+TGG + chr8_4:42552485-42552504 None:intergenic 30.0%
ATATACTCTTTGTCCCATTT+GGG + chr8_4:42552651-42552670 None:intergenic 30.0%
AATATACTCTTTGTCCCATT+TGG + chr8_4:42552652-42552671 None:intergenic 30.0%
! ATGGGACAAAGAGTATATTA+TGG - chr8_4:42552653-42552672 Msa1326990:intron 30.0%
! ACCAATTATGTCCAGTTTTT+CGG + chr8_4:42552735-42552754 None:intergenic 30.0%
ATAATTGGTCCTTGATTTCA+TGG - chr8_4:42552746-42552765 Msa1326990:intron 30.0%
AGACTAAATCTACCTGAATT+TGG + chr8_4:42552787-42552806 None:intergenic 30.0%
!! AGGTAGATTTAGTCTTGAAT+GGG - chr8_4:42552792-42552811 Msa1326990:intron 30.0%
CAGAATTATAAGATGTTTCC+AGG - chr8_4:42552988-42553007 Msa1326990:intron 30.0%
ATTATAAGATGTTTCCAGGT+TGG - chr8_4:42552992-42553011 Msa1326990:intron 30.0%
TTATAAGATGTTTCCAGGTT+GGG - chr8_4:42552993-42553012 Msa1326990:intron 30.0%
TATGGATATAATAGTGATGG+AGG - chr8_4:42553078-42553097 Msa1326990:intron 30.0%
! ATGGATATAATAGTGATGGA+GGG - chr8_4:42553079-42553098 Msa1326990:intron 30.0%
TCCCATTACGATAATATTCT+TGG + chr8_4:42553269-42553288 None:intergenic 30.0%
! TTCGACACAAGATATTGATT+TGG - chr8_4:42553314-42553333 Msa1326990:CDS 30.0%
TCCAAATATCTATAACGTCA+TGG - chr8_4:42553341-42553360 Msa1326990:CDS 30.0%
ACCATGACGTTATAGATATT+TGG + chr8_4:42553345-42553364 None:intergenic 30.0%
GAATTATATTGGACTTACCA+TGG + chr8_4:42553386-42553405 None:intergenic 30.0%
CAAGGTTTAAACATCCAAAT+AGG - chr8_4:42553663-42553682 Msa1326990:CDS 30.0%
AAAACCTCATTATCCCTATT+TGG + chr8_4:42553680-42553699 None:intergenic 30.0%
AATTTAGTCCTTCAAGATCT+AGG + chr8_4:42553797-42553816 None:intergenic 30.0%
TTTCCCTTCAAATGTGTTTA+AGG - chr8_4:42553836-42553855 Msa1326990:CDS 30.0%
CATACCTTAAACACATTTGA+AGG + chr8_4:42553843-42553862 None:intergenic 30.0%
! TGTTTAAGGTATGAAAAGGA+AGG - chr8_4:42553850-42553869 Msa1326990:CDS 30.0%
! GTTTAAGGTATGAAAAGGAA+GGG - chr8_4:42553851-42553870 Msa1326990:CDS 30.0%
ATGATATGTCTAATGTTGGT+AGG + chr8_4:42553907-42553926 None:intergenic 30.0%
CTGTATGATATGTCTAATGT+TGG + chr8_4:42553911-42553930 None:intergenic 30.0%
TTATAGTGTATAGTCAATGC+AGG - chr8_4:42554027-42554046 Msa1326990:CDS 30.0%
!! TCTTTTTCGCGATACATAAA+AGG + chr8_4:42554116-42554135 None:intergenic 30.0%
!!! TGATATACTTATGGTTTTGG+TGG - chr8_4:42552254-42552273 Msa1326990:CDS 30.0%
TTGTAATTCAATGTATCACC+TGG + chr8_4:42552328-42552347 None:intergenic 30.0%
AACTGCTGAATTTAAGTCTA+TGG + chr8_4:42552485-42552504 None:intergenic 30.0%
ATATACTCTTTGTCCCATTT+GGG + chr8_4:42552651-42552670 None:intergenic 30.0%
AATATACTCTTTGTCCCATT+TGG + chr8_4:42552652-42552671 None:intergenic 30.0%
! ATGGGACAAAGAGTATATTA+TGG - chr8_4:42552653-42552672 Msa1326990:intron 30.0%
! ACCAATTATGTCCAGTTTTT+CGG + chr8_4:42552735-42552754 None:intergenic 30.0%
ATAATTGGTCCTTGATTTCA+TGG - chr8_4:42552746-42552765 Msa1326990:intron 30.0%
AGACTAAATCTACCTGAATT+TGG + chr8_4:42552787-42552806 None:intergenic 30.0%
!! AGGTAGATTTAGTCTTGAAT+GGG - chr8_4:42552792-42552811 Msa1326990:intron 30.0%
CAGAATTATAAGATGTTTCC+AGG - chr8_4:42552988-42553007 Msa1326990:intron 30.0%
ATTATAAGATGTTTCCAGGT+TGG - chr8_4:42552992-42553011 Msa1326990:intron 30.0%
TTATAAGATGTTTCCAGGTT+GGG - chr8_4:42552993-42553012 Msa1326990:intron 30.0%
TATGGATATAATAGTGATGG+AGG - chr8_4:42553078-42553097 Msa1326990:intron 30.0%
! ATGGATATAATAGTGATGGA+GGG - chr8_4:42553079-42553098 Msa1326990:intron 30.0%
TCCCATTACGATAATATTCT+TGG + chr8_4:42553269-42553288 None:intergenic 30.0%
! TTCGACACAAGATATTGATT+TGG - chr8_4:42553314-42553333 Msa1326990:CDS 30.0%
TCCAAATATCTATAACGTCA+TGG - chr8_4:42553341-42553360 Msa1326990:CDS 30.0%
ACCATGACGTTATAGATATT+TGG + chr8_4:42553345-42553364 None:intergenic 30.0%
GAATTATATTGGACTTACCA+TGG + chr8_4:42553386-42553405 None:intergenic 30.0%
CAAGGTTTAAACATCCAAAT+AGG - chr8_4:42553663-42553682 Msa1326990:CDS 30.0%
AAAACCTCATTATCCCTATT+TGG + chr8_4:42553680-42553699 None:intergenic 30.0%
AATTTAGTCCTTCAAGATCT+AGG + chr8_4:42553797-42553816 None:intergenic 30.0%
TTTCCCTTCAAATGTGTTTA+AGG - chr8_4:42553836-42553855 Msa1326990:CDS 30.0%
CATACCTTAAACACATTTGA+AGG + chr8_4:42553843-42553862 None:intergenic 30.0%
! TGTTTAAGGTATGAAAAGGA+AGG - chr8_4:42553850-42553869 Msa1326990:CDS 30.0%
! GTTTAAGGTATGAAAAGGAA+GGG - chr8_4:42553851-42553870 Msa1326990:CDS 30.0%
ATGATATGTCTAATGTTGGT+AGG + chr8_4:42553907-42553926 None:intergenic 30.0%
CTGTATGATATGTCTAATGT+TGG + chr8_4:42553911-42553930 None:intergenic 30.0%
TTATAGTGTATAGTCAATGC+AGG - chr8_4:42554027-42554046 Msa1326990:CDS 30.0%
!! TCTTTTTCGCGATACATAAA+AGG + chr8_4:42554116-42554135 None:intergenic 30.0%
! TCCAAGCTATGTTCTAAACA+AGG - chr8_4:42552349-42552368 Msa1326990:intron 35.0%
CAATTGAACATTAGATAGCG+AGG - chr8_4:42552390-42552409 Msa1326990:intron 35.0%
!! ATTGGTGTTAATGCGGATTA+TGG - chr8_4:42552427-42552446 Msa1326990:CDS 35.0%
GGCGAAGAGTAAATGATTAT+TGG + chr8_4:42552562-42552581 None:intergenic 35.0%
TTCAACAACTTCACCCAAAT+GGG - chr8_4:42552635-42552654 Msa1326990:intron 35.0%
GTTGGGATCAAAATGTATGT+TGG + chr8_4:42552694-42552713 None:intergenic 35.0%
ACCGAAAAACTGGACATAAT+TGG - chr8_4:42552731-42552750 Msa1326990:intron 35.0%
!! CAGGTAGATTTAGTCTTGAA+TGG - chr8_4:42552791-42552810 Msa1326990:intron 35.0%
ATGTTCAATTGACCTTCGTT+TGG + chr8_4:42552820-42552839 None:intergenic 35.0%
TGGTTTATTCGAGAACATTC+CGG - chr8_4:42552888-42552907 Msa1326990:intron 35.0%
! TTGGTATATCATCCCAGTTT+TGG + chr8_4:42553107-42553126 None:intergenic 35.0%
GGATGATATACCAACTTGTA+GGG - chr8_4:42553113-42553132 Msa1326990:intron 35.0%
!!! TTTTTTTGAAACACCTCACC+AGG + chr8_4:42553141-42553160 None:intergenic 35.0%
! GAGGTGTTTCAAAAAAAGAC+AGG - chr8_4:42553144-42553163 Msa1326990:intron 35.0%
ATAAGTCACATTGTCTTCGA+TGG + chr8_4:42553193-42553212 None:intergenic 35.0%
ATCGAAGACAATGTGACTTA+TGG - chr8_4:42553192-42553211 Msa1326990:CDS 35.0%
! GAATATTATCGTAATGGGAC+TGG - chr8_4:42553270-42553289 Msa1326990:CDS 35.0%
CTGGATAGAAAATCAGATTG+TGG - chr8_4:42553582-42553601 Msa1326990:CDS 35.0%
AGTCTGTAACTAACAATGTC+TGG - chr8_4:42553617-42553636 Msa1326990:CDS 35.0%
ACATCCAAATAGGGATAATG+AGG - chr8_4:42553673-42553692 Msa1326990:CDS 35.0%
CAATGGAAGAAAACACACAT+TGG + chr8_4:42553707-42553726 None:intergenic 35.0%
ACACATTTGAAGGGAAAGAA+AGG + chr8_4:42553833-42553852 None:intergenic 35.0%
ATAAAAGGAGTGGGCATAAT+AGG + chr8_4:42554101-42554120 None:intergenic 35.0%
!! AATATGCACGTAAAGGTACT+TGG - chr8_4:42554142-42554161 Msa1326990:intron 35.0%
TTTGACACCAAAGGATTCAT+GGG + chr8_4:42554296-42554315 None:intergenic 35.0%
TTCAAGATCTTTGACACCAA+AGG + chr8_4:42554305-42554324 None:intergenic 35.0%
! TCCAAGCTATGTTCTAAACA+AGG - chr8_4:42552349-42552368 Msa1326990:intron 35.0%
CAATTGAACATTAGATAGCG+AGG - chr8_4:42552390-42552409 Msa1326990:intron 35.0%
!! ATTGGTGTTAATGCGGATTA+TGG - chr8_4:42552427-42552446 Msa1326990:CDS 35.0%
GGCGAAGAGTAAATGATTAT+TGG + chr8_4:42552562-42552581 None:intergenic 35.0%
TTCAACAACTTCACCCAAAT+GGG - chr8_4:42552635-42552654 Msa1326990:intron 35.0%
GTTGGGATCAAAATGTATGT+TGG + chr8_4:42552694-42552713 None:intergenic 35.0%
ACCGAAAAACTGGACATAAT+TGG - chr8_4:42552731-42552750 Msa1326990:intron 35.0%
!! CAGGTAGATTTAGTCTTGAA+TGG - chr8_4:42552791-42552810 Msa1326990:intron 35.0%
ATGTTCAATTGACCTTCGTT+TGG + chr8_4:42552820-42552839 None:intergenic 35.0%
TGGTTTATTCGAGAACATTC+CGG - chr8_4:42552888-42552907 Msa1326990:intron 35.0%
! TTGGTATATCATCCCAGTTT+TGG + chr8_4:42553107-42553126 None:intergenic 35.0%
GGATGATATACCAACTTGTA+GGG - chr8_4:42553113-42553132 Msa1326990:intron 35.0%
!!! TTTTTTTGAAACACCTCACC+AGG + chr8_4:42553141-42553160 None:intergenic 35.0%
! GAGGTGTTTCAAAAAAAGAC+AGG - chr8_4:42553144-42553163 Msa1326990:intron 35.0%
ATAAGTCACATTGTCTTCGA+TGG + chr8_4:42553193-42553212 None:intergenic 35.0%
ATCGAAGACAATGTGACTTA+TGG - chr8_4:42553192-42553211 Msa1326990:CDS 35.0%
! GAATATTATCGTAATGGGAC+TGG - chr8_4:42553270-42553289 Msa1326990:CDS 35.0%
CTGGATAGAAAATCAGATTG+TGG - chr8_4:42553582-42553601 Msa1326990:CDS 35.0%
AGTCTGTAACTAACAATGTC+TGG - chr8_4:42553617-42553636 Msa1326990:CDS 35.0%
ACATCCAAATAGGGATAATG+AGG - chr8_4:42553673-42553692 Msa1326990:CDS 35.0%
CAATGGAAGAAAACACACAT+TGG + chr8_4:42553707-42553726 None:intergenic 35.0%
ACACATTTGAAGGGAAAGAA+AGG + chr8_4:42553833-42553852 None:intergenic 35.0%
ATAAAAGGAGTGGGCATAAT+AGG + chr8_4:42554101-42554120 None:intergenic 35.0%
!! AATATGCACGTAAAGGTACT+TGG - chr8_4:42554142-42554161 Msa1326990:intron 35.0%
TTTGACACCAAAGGATTCAT+GGG + chr8_4:42554296-42554315 None:intergenic 35.0%
TTCAAGATCTTTGACACCAA+AGG + chr8_4:42554305-42554324 None:intergenic 35.0%
! ACAAGTGATAGTTTGAAGCC+AGG - chr8_4:42552307-42552326 Msa1326990:intron 40.0%
!! GCCTTGTTTAGAACATAGCT+TGG + chr8_4:42552353-42552372 None:intergenic 40.0%
!! CTTGGTCATTGGTGTTAATG+CGG - chr8_4:42552420-42552439 Msa1326990:CDS 40.0%
GTTCTATCACTAGACTACTC+TGG - chr8_4:42552502-42552521 Msa1326990:intron 40.0%
CTTCAACAACTTCACCCAAA+TGG - chr8_4:42552634-42552653 Msa1326990:intron 40.0%
TTTGATCCCAACGATGAAGT+TGG - chr8_4:42552702-42552721 Msa1326990:intron 40.0%
TTGATCCCAACGATGAAGTT+GGG - chr8_4:42552703-42552722 Msa1326990:intron 40.0%
TAACTCCCAACTTCATCGTT+GGG + chr8_4:42552711-42552730 None:intergenic 40.0%
TTAACTCCCAACTTCATCGT+TGG + chr8_4:42552712-42552731 None:intergenic 40.0%
TTGGGAGTTAACCGAAAAAC+TGG - chr8_4:42552721-42552740 Msa1326990:intron 40.0%
TTGGTCCTTGATTTCATGGT+TGG - chr8_4:42552750-42552769 Msa1326990:intron 40.0%
!! CTACCTGAATTTGGTAGTGA+AGG + chr8_4:42552778-42552797 None:intergenic 40.0%
CAATTGAACATCAAGCAACG+CGG - chr8_4:42552829-42552848 Msa1326990:intron 40.0%
GGCAAAGTGTATTGGAAAAG+CGG - chr8_4:42552850-42552869 Msa1326990:intron 40.0%
TACACTCGTTGAACTTTCAC+CGG + chr8_4:42552910-42552929 None:intergenic 40.0%
GCGAATGCAGATATGTGTTA+TGG - chr8_4:42553060-42553079 Msa1326990:intron 40.0%
GGGATGATATACCAACTTGT+AGG - chr8_4:42553112-42553131 Msa1326990:intron 40.0%
GTGATTGTAAGCTCAGTTGT+TGG - chr8_4:42553220-42553239 Msa1326990:CDS 40.0%
AATCCAACGCTAAATCACCA+TGG - chr8_4:42553366-42553385 Msa1326990:CDS 40.0%
TTACCATGGTGATTTAGCGT+TGG + chr8_4:42553372-42553391 None:intergenic 40.0%
! AATGTCTGGAATACCCATGA+GGG - chr8_4:42553631-42553650 Msa1326990:CDS 40.0%
AAGATCTAGGCACTTATCTC+GGG + chr8_4:42553784-42553803 None:intergenic 40.0%
CAAGATCTAGGCACTTATCT+CGG + chr8_4:42553785-42553804 None:intergenic 40.0%
GATAAGTGCCTAGATCTTGA+AGG - chr8_4:42553786-42553805 Msa1326990:CDS 40.0%
! TCAATGCAGGTAAAAGCATG+CGG - chr8_4:42554040-42554059 Msa1326990:CDS 40.0%
! AAAAGCATGCGGATATGGAT+AGG - chr8_4:42554051-42554070 Msa1326990:CDS 40.0%
TCGCGATACATAAAAGGAGT+GGG + chr8_4:42554110-42554129 None:intergenic 40.0%
TTCGCGATACATAAAAGGAG+TGG + chr8_4:42554111-42554130 None:intergenic 40.0%
GGAGAATGAGATGCAAGATT+TGG - chr8_4:42554264-42554283 Msa1326990:CDS 40.0%
CTTTGACACCAAAGGATTCA+TGG + chr8_4:42554297-42554316 None:intergenic 40.0%
! ACAAGTGATAGTTTGAAGCC+AGG - chr8_4:42552307-42552326 Msa1326990:intron 40.0%
!! GCCTTGTTTAGAACATAGCT+TGG + chr8_4:42552353-42552372 None:intergenic 40.0%
!! CTTGGTCATTGGTGTTAATG+CGG - chr8_4:42552420-42552439 Msa1326990:CDS 40.0%
GTTCTATCACTAGACTACTC+TGG - chr8_4:42552502-42552521 Msa1326990:intron 40.0%
CTTCAACAACTTCACCCAAA+TGG - chr8_4:42552634-42552653 Msa1326990:intron 40.0%
TTTGATCCCAACGATGAAGT+TGG - chr8_4:42552702-42552721 Msa1326990:intron 40.0%
TTGATCCCAACGATGAAGTT+GGG - chr8_4:42552703-42552722 Msa1326990:intron 40.0%
TAACTCCCAACTTCATCGTT+GGG + chr8_4:42552711-42552730 None:intergenic 40.0%
TTAACTCCCAACTTCATCGT+TGG + chr8_4:42552712-42552731 None:intergenic 40.0%
TTGGGAGTTAACCGAAAAAC+TGG - chr8_4:42552721-42552740 Msa1326990:intron 40.0%
TTGGTCCTTGATTTCATGGT+TGG - chr8_4:42552750-42552769 Msa1326990:intron 40.0%
!! CTACCTGAATTTGGTAGTGA+AGG + chr8_4:42552778-42552797 None:intergenic 40.0%
CAATTGAACATCAAGCAACG+CGG - chr8_4:42552829-42552848 Msa1326990:intron 40.0%
GGCAAAGTGTATTGGAAAAG+CGG - chr8_4:42552850-42552869 Msa1326990:intron 40.0%
TACACTCGTTGAACTTTCAC+CGG + chr8_4:42552910-42552929 None:intergenic 40.0%
GCGAATGCAGATATGTGTTA+TGG - chr8_4:42553060-42553079 Msa1326990:intron 40.0%
GGGATGATATACCAACTTGT+AGG - chr8_4:42553112-42553131 Msa1326990:intron 40.0%
GTGATTGTAAGCTCAGTTGT+TGG - chr8_4:42553220-42553239 Msa1326990:CDS 40.0%
AATCCAACGCTAAATCACCA+TGG - chr8_4:42553366-42553385 Msa1326990:CDS 40.0%
TTACCATGGTGATTTAGCGT+TGG + chr8_4:42553372-42553391 None:intergenic 40.0%
! AATGTCTGGAATACCCATGA+GGG - chr8_4:42553631-42553650 Msa1326990:CDS 40.0%
AAGATCTAGGCACTTATCTC+GGG + chr8_4:42553784-42553803 None:intergenic 40.0%
CAAGATCTAGGCACTTATCT+CGG + chr8_4:42553785-42553804 None:intergenic 40.0%
GATAAGTGCCTAGATCTTGA+AGG - chr8_4:42553786-42553805 Msa1326990:CDS 40.0%
! TCAATGCAGGTAAAAGCATG+CGG - chr8_4:42554040-42554059 Msa1326990:CDS 40.0%
! AAAAGCATGCGGATATGGAT+AGG - chr8_4:42554051-42554070 Msa1326990:CDS 40.0%
TCGCGATACATAAAAGGAGT+GGG + chr8_4:42554110-42554129 None:intergenic 40.0%
TTCGCGATACATAAAAGGAG+TGG + chr8_4:42554111-42554130 None:intergenic 40.0%
GGAGAATGAGATGCAAGATT+TGG - chr8_4:42554264-42554283 Msa1326990:CDS 40.0%
CTTTGACACCAAAGGATTCA+TGG + chr8_4:42554297-42554316 None:intergenic 40.0%
! TAATGCGGATTATGGCACTC+AGG - chr8_4:42552435-42552454 Msa1326990:CDS 45.0%
GTTACCCGTGTCTAACATAG+TGG + chr8_4:42552608-42552627 None:intergenic 45.0%
AGGAGCCAACCATGAAATCA+AGG + chr8_4:42552758-42552777 None:intergenic 45.0%
GCTCCTTCACTACCAAATTC+AGG - chr8_4:42552772-42552791 Msa1326990:intron 45.0%
CTTGAATGGGAACCAAACGA+AGG - chr8_4:42552805-42552824 Msa1326990:intron 45.0%
AGCGGAAAACGTAGAAGCAA+TGG - chr8_4:42552868-42552887 Msa1326990:intron 45.0%
AGGTTGGGAACTGTACTCAA+CGG - chr8_4:42553008-42553027 Msa1326990:intron 45.0%
!! GGGATGTTAACGAGTACTGA+AGG - chr8_4:42553030-42553049 Msa1326990:intron 45.0%
ATACCAACTTGTAGGGAACC+TGG - chr8_4:42553120-42553139 Msa1326990:intron 45.0%
TGGAGAAACTGTGACTGCAA+TGG - chr8_4:42553240-42553259 Msa1326990:CDS 45.0%
GGAGAAACTGTGACTGCAAT+GGG - chr8_4:42553241-42553260 Msa1326990:CDS 45.0%
! CAATGTCTGGAATACCCATG+AGG - chr8_4:42553630-42553649 Msa1326990:CDS 45.0%
AGATCTAGGCACTTATCTCG+GGG + chr8_4:42553783-42553802 None:intergenic 45.0%
GGTAGGAGTAACTTAGACAG+AGG + chr8_4:42553890-42553909 None:intergenic 45.0%
! CAGGTAAAAGCATGCGGATA+TGG - chr8_4:42554046-42554065 Msa1326990:CDS 45.0%
! TAATGCGGATTATGGCACTC+AGG - chr8_4:42552435-42552454 Msa1326990:CDS 45.0%
GTTACCCGTGTCTAACATAG+TGG + chr8_4:42552608-42552627 None:intergenic 45.0%
AGGAGCCAACCATGAAATCA+AGG + chr8_4:42552758-42552777 None:intergenic 45.0%
GCTCCTTCACTACCAAATTC+AGG - chr8_4:42552772-42552791 Msa1326990:intron 45.0%
CTTGAATGGGAACCAAACGA+AGG - chr8_4:42552805-42552824 Msa1326990:intron 45.0%
AGCGGAAAACGTAGAAGCAA+TGG - chr8_4:42552868-42552887 Msa1326990:intron 45.0%
AGGTTGGGAACTGTACTCAA+CGG - chr8_4:42553008-42553027 Msa1326990:intron 45.0%
!! GGGATGTTAACGAGTACTGA+AGG - chr8_4:42553030-42553049 Msa1326990:intron 45.0%
ATACCAACTTGTAGGGAACC+TGG - chr8_4:42553120-42553139 Msa1326990:intron 45.0%
TGGAGAAACTGTGACTGCAA+TGG - chr8_4:42553240-42553259 Msa1326990:CDS 45.0%
GGAGAAACTGTGACTGCAAT+GGG - chr8_4:42553241-42553260 Msa1326990:CDS 45.0%
! CAATGTCTGGAATACCCATG+AGG - chr8_4:42553630-42553649 Msa1326990:CDS 45.0%
AGATCTAGGCACTTATCTCG+GGG + chr8_4:42553783-42553802 None:intergenic 45.0%
GGTAGGAGTAACTTAGACAG+AGG + chr8_4:42553890-42553909 None:intergenic 45.0%
! CAGGTAAAAGCATGCGGATA+TGG - chr8_4:42554046-42554065 Msa1326990:CDS 45.0%
!! AAAAATAAATAGAATTATAT+TGG + chr8_4:42553397-42553416 None:intergenic 5.0%
!! AAAAATAAATAGAATTATAT+TGG + chr8_4:42553397-42553416 None:intergenic 5.0%
AGATAGCGAGGATGCTCACT+TGG - chr8_4:42552402-42552421 Msa1326990:CDS 50.0%
GAGGATGCTCACTTGGTCAT+TGG - chr8_4:42552409-42552428 Msa1326990:CDS 50.0%
!! ACGGTGTTGTTGGTTGGTTG+AGG + chr8_4:42552583-42552602 None:intergenic 50.0%
TCAACCAACCAACAACACCG+TGG - chr8_4:42552582-42552601 Msa1326990:intron 50.0%
CGTGTCTAACATAGTGGCCA+CGG + chr8_4:42552602-42552621 None:intergenic 50.0%
CGTGGCCACTATGTTAGACA+CGG - chr8_4:42552600-42552619 Msa1326990:intron 50.0%
GTGGCCACTATGTTAGACAC+GGG - chr8_4:42552601-42552620 Msa1326990:intron 50.0%
AGCAACGCGGCAAAGTGTAT+TGG - chr8_4:42552842-42552861 Msa1326990:intron 50.0%
GTTGAGTACAGTTCCCAACC+TGG + chr8_4:42553009-42553028 None:intergenic 50.0%
GGTTGGGAACTGTACTCAAC+GGG - chr8_4:42553009-42553028 Msa1326990:intron 50.0%
GTTGGGAACTGTACTCAACG+GGG - chr8_4:42553010-42553029 Msa1326990:intron 50.0%
!! TGATGGAGGGTGCCAAAACT+GGG - chr8_4:42553092-42553111 Msa1326990:intron 50.0%
TCACCAGGTTCCCTACAAGT+TGG + chr8_4:42553126-42553145 None:intergenic 50.0%
AACTTGTAGGGAACCTGGTG+AGG - chr8_4:42553125-42553144 Msa1326990:intron 50.0%
! ATGGTTGCACTGTCGGTGTT+GGG + chr8_4:42553174-42553193 None:intergenic 50.0%
GTCTTCGATGGTTGCACTGT+CGG + chr8_4:42553181-42553200 None:intergenic 50.0%
GCAGCTTCCCATGAATCCTT+TGG - chr8_4:42554286-42554305 Msa1326990:CDS 50.0%
AGATAGCGAGGATGCTCACT+TGG - chr8_4:42552402-42552421 Msa1326990:CDS 50.0%
GAGGATGCTCACTTGGTCAT+TGG - chr8_4:42552409-42552428 Msa1326990:CDS 50.0%
!! ACGGTGTTGTTGGTTGGTTG+AGG + chr8_4:42552583-42552602 None:intergenic 50.0%
TCAACCAACCAACAACACCG+TGG - chr8_4:42552582-42552601 Msa1326990:intron 50.0%
CGTGTCTAACATAGTGGCCA+CGG + chr8_4:42552602-42552621 None:intergenic 50.0%
CGTGGCCACTATGTTAGACA+CGG - chr8_4:42552600-42552619 Msa1326990:intron 50.0%
GTGGCCACTATGTTAGACAC+GGG - chr8_4:42552601-42552620 Msa1326990:intron 50.0%
AGCAACGCGGCAAAGTGTAT+TGG - chr8_4:42552842-42552861 Msa1326990:intron 50.0%
GTTGAGTACAGTTCCCAACC+TGG + chr8_4:42553009-42553028 None:intergenic 50.0%
GGTTGGGAACTGTACTCAAC+GGG - chr8_4:42553009-42553028 Msa1326990:intron 50.0%
GTTGGGAACTGTACTCAACG+GGG - chr8_4:42553010-42553029 Msa1326990:intron 50.0%
!! TGATGGAGGGTGCCAAAACT+GGG - chr8_4:42553092-42553111 Msa1326990:intron 50.0%
TCACCAGGTTCCCTACAAGT+TGG + chr8_4:42553126-42553145 None:intergenic 50.0%
AACTTGTAGGGAACCTGGTG+AGG - chr8_4:42553125-42553144 Msa1326990:intron 50.0%
! ATGGTTGCACTGTCGGTGTT+GGG + chr8_4:42553174-42553193 None:intergenic 50.0%
GTCTTCGATGGTTGCACTGT+CGG + chr8_4:42553181-42553200 None:intergenic 50.0%
GCAGCTTCCCATGAATCCTT+TGG - chr8_4:42554286-42554305 Msa1326990:CDS 50.0%
CGGATTATGGCACTCAGGTG+TGG - chr8_4:42552440-42552459 Msa1326990:CDS 55.0%
!! CATAGTGGCCACGGTGTTGT+TGG + chr8_4:42552593-42552612 None:intergenic 55.0%
!! GTGATGGAGGGTGCCAAAAC+TGG - chr8_4:42553091-42553110 Msa1326990:intron 55.0%
GATGGTTGCACTGTCGGTGT+TGG + chr8_4:42553175-42553194 None:intergenic 55.0%
! GTCTGGAATACCCATGAGGG+AGG - chr8_4:42553634-42553653 Msa1326990:CDS 55.0%
CTTGCTCGATCCTCCCTCAT+GGG + chr8_4:42553647-42553666 None:intergenic 55.0%
GGGCTCACATACGTCACCAA+AGG + chr8_4:42553763-42553782 None:intergenic 55.0%
CGGATTATGGCACTCAGGTG+TGG - chr8_4:42552440-42552459 Msa1326990:CDS 55.0%
!! CATAGTGGCCACGGTGTTGT+TGG + chr8_4:42552593-42552612 None:intergenic 55.0%
!! GTGATGGAGGGTGCCAAAAC+TGG - chr8_4:42553091-42553110 Msa1326990:intron 55.0%
GATGGTTGCACTGTCGGTGT+TGG + chr8_4:42553175-42553194 None:intergenic 55.0%
! GTCTGGAATACCCATGAGGG+AGG - chr8_4:42553634-42553653 Msa1326990:CDS 55.0%
CTTGCTCGATCCTCCCTCAT+GGG + chr8_4:42553647-42553666 None:intergenic 55.0%
GGGCTCACATACGTCACCAA+AGG + chr8_4:42553763-42553782 None:intergenic 55.0%
!! GTGGCCACGGTGTTGTTGGT+TGG + chr8_4:42552589-42552608 None:intergenic 60.0%
CAGCTCACATGTGCGACGCA+CGG + chr8_4:42553440-42553459 None:intergenic 60.0%
CCTTGCTCGATCCTCCCTCA+TGG + chr8_4:42553648-42553667 None:intergenic 60.0%
CCATGAGGGAGGATCGAGCA+AGG - chr8_4:42553645-42553664 Msa1326990:CDS 60.0%
!! GTGGCCACGGTGTTGTTGGT+TGG + chr8_4:42552589-42552608 None:intergenic 60.0%
CAGCTCACATGTGCGACGCA+CGG + chr8_4:42553440-42553459 None:intergenic 60.0%
CCTTGCTCGATCCTCCCTCA+TGG + chr8_4:42553648-42553667 None:intergenic 60.0%
CCATGAGGGAGGATCGAGCA+AGG - chr8_4:42553645-42553664 Msa1326990:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 42552220 42554333 42552220 ID=Msa1326990;Name=Msa1326990
chr8_4 mRNA 42552220 42554333 42552220 ID=Msa1326990-mRNA-1;Parent=Msa1326990;Name=Msa1326990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.5|1|1|0.75|4|0|430
chr8_4 exon 42552220 42552308 42552220 ID=Msa1326990-mRNA-1:exon:12306;Parent=Msa1326990-mRNA-1
chr8_4 exon 42552397 42552504 42552397 ID=Msa1326990-mRNA-1:exon:12305;Parent=Msa1326990-mRNA-1
chr8_4 exon 42553166 42554149 42553166 ID=Msa1326990-mRNA-1:exon:12304;Parent=Msa1326990-mRNA-1
chr8_4 exon 42554225 42554333 42554225 ID=Msa1326990-mRNA-1:exon:12303;Parent=Msa1326990-mRNA-1
chr8_4 CDS 42554225 42554333 42554225 ID=Msa1326990-mRNA-1:cds;Parent=Msa1326990-mRNA-1
chr8_4 CDS 42553166 42554149 42553166 ID=Msa1326990-mRNA-1:cds;Parent=Msa1326990-mRNA-1
chr8_4 CDS 42552397 42552504 42552397 ID=Msa1326990-mRNA-1:cds;Parent=Msa1326990-mRNA-1
chr8_4 CDS 42552220 42552308 42552220 ID=Msa1326990-mRNA-1:cds;Parent=Msa1326990-mRNA-1
Gene Sequence

>Msa1326990

ATGATAAGCTTTGAAGTAAAGAAACAAGTTGTATTGATATACTTATGGTTTTGGTGGAGTACTACTACTAGTATTCTTGTTAAAGCAACAAGTGATAGTTTGAAGCCAGATAGCGAGGATGCTCACTTGGTCATTGGTGTTAATGCGGATTATGGCACTCAGGTGTGGATGTATAATAGAAATCATTCCATAGACTTAAATTCAGCAGTTCTATCACTAGACTACTCTGGTGTGCTCAAAATAGAATTTCAAAATAGGAATTTACCAATAATCATTTACTCTTCGCCTCAACCAACCAACAACACCGTGGCCACTATGTTAGACACGGGTAACTTTGTGCTTCAACAACTTCACCCAAATGGGACAAAGAGTATATTATGGCAGAGTTTTGATTATCCAACATACATTTTGATCCCAACGATGAAGTTGGGAGTTAACCGAAAAACTGGACATAATTGGTCCTTGATTTCATGGTTGGCTCCTTCACTACCAAATTCAGGTAGATTTAGTCTTGAATGGGAACCAAACGAAGGTCAATTGAACATCAAGCAACGCGGCAAAGTGTATTGGAAAAGCGGAAAACGTAGAAGCAATGGTTTATTCGAGAACATTCCGGTGAAAGTTCAACGAGTGTATCAATACATTATTGTCTCTAACAAGGATGAAGACTCCTTCACTTTTAAAATCAAAGATCAGAATTATAAGATGTTTCCAGGTTGGGAACTGTACTCAACGGGGATGTTAACGAGTACTGAAGGAGAGATTGCGAATGCAGATATGTGTTATGGATATAATAGTGATGGAGGGTGCCAAAACTGGGATGATATACCAACTTGTAGGGAACCTGGTGAGGTGTTTCAAAAAAAGACAGGCAGACCCAACACCGACAGTGCAACCATCGAAGACAATGTGACTTATGGTTATAGTGATTGTAAGCTCAGTTGTTGGAGAAACTGTGACTGCAATGGGTTCCAAGAATATTATCGTAATGGGACTGGATGTGTATTTTATTCATCGAATTCGACACAAGATATTGATTTGGAGTATCCAAATATCTATAACGTCATGGTAAATCCAACGCTAAATCACCATGGTAAAAGCATGCGGATATGGATAGGTGTTGCAATAGCAGCTGCTATACTCCTATTATGCCCACTCCTTTTATGTATCGCGAAAAAGAAACAAAAATATGCACGTAAAGATATCAAAATTAAAAGAGAGGAGAATGAGATGCAAGATTTGGCAGCTTCCCATGAATCCTTTGGTGTCAAAGATCTTGAAGATGACTTC
Protein sequence

>Msa1326990

MISFEVKKQVVLIYLWFWWSTTTSILVKATSDSLKPDSEDAHLVIGVNADYGTQVWMYNRNHSIDLNSAVLSLDYSGVLKIEFQNRNLPIIIYSSPQPTNNTVATMLDTGNFVLQQLHPNGTKSILWQSFDYPTYILIPTMKLGVNRKTGHNWSLISWLAPSLPNSGRFSLEWEPNEGQLNIKQRGKVYWKSGKRRSNGLFENIPVKVQRVYQYIIVSNKDEDSFTFKIKDQNYKMFPGWELYSTGMLTSTEGEIANADMCYGYNSDGGCQNWDDIPTCREPGEVFQKKTGRPNTDSATIEDNVTYGYSDCKLSCWRNCDCNGFQEYYRNGTGCVFYSSNSTQDIDLEYPNIYNVMVNPTLNHHGKSMRIWIGVAIAAAILLLCPLLLCIAKKKQKYARKDIKIKREENEMQDLAASHESFGVKDLEDDF