AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1278840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278840 MtrunA17_Chr8g0348831 99.261 541 4 0 1 541 1 541 0.0 1102
Msa1278840 MtrunA17_Chr7g0247841 81.214 527 97 2 15 540 12 537 0.0 886
Msa1278840 MtrunA17_Chr6g0475601 71.236 518 145 3 20 536 23 537 0.0 760
Msa1278840 MtrunA17_Chr7g0214221 50.200 500 244 3 25 522 30 526 2.53e-173 500
Msa1278840 MtrunA17_Chr1g0213851 55.869 213 94 0 308 520 17 229 1.15e-82 257
Msa1278840 MtrunA17_Chr1g0213841 46.018 113 59 1 178 288 6 118 1.64e-23 95.9
Msa1278840 MtrunA17_Chr1g0203091 24.870 386 206 14 202 538 19 369 1.44e-22 99.8
Msa1278840 MtrunA17_Chr3g0139491 31.959 194 117 5 348 541 161 339 9.37e-21 93.6
Msa1278840 MtrunA17_Chr1g0147151 31.500 200 118 6 338 537 156 336 1.91e-19 90.1
Msa1278840 MtrunA17_Chr1g0213831 34.737 95 62 0 40 134 30 124 9.49e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278840 AT1G01650.1 73.978 538 134 2 6 537 2 539 0.0 834
Msa1278840 AT1G63690.1 74.319 514 130 1 23 536 25 536 0.0 791
Msa1278840 AT1G63690.2 74.125 514 131 1 23 536 25 536 0.0 790
Msa1278840 AT1G01650.3 76.574 397 92 1 142 537 1 397 0.0 635
Msa1278840 AT1G01650.4 76.574 397 92 1 142 537 1 397 0.0 635
Msa1278840 AT1G01650.2 76.574 397 92 1 142 537 1 397 0.0 635
Msa1278840 AT2G43070.1 47.338 526 272 3 8 530 11 534 6.87e-160 466
Msa1278840 AT2G43070.3 47.338 526 272 3 8 530 70 593 6.35e-159 466
Msa1278840 AT2G43070.2 46.992 532 271 4 8 530 11 540 2.45e-158 462
Msa1278840 AT2G43070.4 46.992 532 271 4 8 530 70 599 1.63e-157 462
Msa1278840 AT1G05820.1 44.008 509 278 3 31 537 30 533 7.37e-145 428
Msa1278840 AT1G05820.2 44.842 475 258 2 31 503 30 502 3.48e-140 415
Msa1278840 AT1G05820.4 45.477 398 210 3 142 537 1 393 4.27e-119 357
Msa1278840 AT1G05820.3 40.849 377 219 2 31 405 30 404 4.76e-91 286
Msa1278840 AT4G33410.1 26.074 326 177 11 241 519 47 355 1.38e-23 103
Msa1278840 AT2G03120.1 33.684 190 111 5 348 537 161 335 3.02e-22 98.6

Find 146 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTATTAATGTTATTAATT+TGG 0.133418 8_3:+15448121 None:intergenic
ATATGAGGACAATGCCTTTC+TGG 0.135793 8_3:+15443003 None:intergenic
CGTGCTTGCTTCTTGTTTCT+TGG 0.199556 8_3:-15445849 Msa1278840:CDS
CTTTCTTATATGACATCTTA+TGG 0.212778 8_3:-15445018 Msa1278840:CDS
TTATACTTACCAAGTGTAAA+TGG 0.235488 8_3:+15443870 None:intergenic
GTTTGGTGTGTCTTTGGTTT+TGG 0.248253 8_3:-15447893 Msa1278840:CDS
GTTACAGCATCATTGGTTTC+GGG 0.276829 8_3:-15444754 Msa1278840:CDS
ACTCAAAATACCTTATTCTT+AGG 0.281740 8_3:+15447006 None:intergenic
GCTCACCAATGAGATCATTT+TGG 0.282959 8_3:-15446850 Msa1278840:CDS
ATAATCAATATTCTAGTTGA+TGG 0.283667 8_3:-15442713 Msa1278840:three_prime_UTR
GGTTACAGCATCATTGGTTT+CGG 0.284269 8_3:-15444755 Msa1278840:CDS
CTTCTTTCCCAACGACAAAA+AGG 0.287834 8_3:+15443062 None:intergenic
ACCACGTTTGTTTGATCCTT+GGG 0.292106 8_3:-15444780 Msa1278840:CDS
ATATGTCGCTTTAAACTTGA+TGG 0.299572 8_3:-15443928 Msa1278840:CDS
TATGTCAAGATACCGTTCTT+TGG 0.299611 8_3:-15445515 Msa1278840:CDS
CATAGTATTTGCAGTGGTTT+GGG 0.300952 8_3:-15445453 Msa1278840:CDS
GCATAGTATTTGCAGTGGTT+TGG 0.301464 8_3:-15445454 Msa1278840:CDS
AAAGAGGGAAGACTAATAAA+AGG 0.306553 8_3:-15442619 Msa1278840:three_prime_UTR
GTTTCTGTTTGGTGTGTCTT+TGG 0.311149 8_3:-15447899 Msa1278840:CDS
TGGAATCATACCTTGAGATT+TGG 0.328219 8_3:+15445243 None:intergenic
TATGGGTGTTCGTTTCTAAA+TGG 0.328930 8_3:-15445000 Msa1278840:CDS
CCAATAAGAAGCACATAAAA+TGG 0.329319 8_3:+15446221 None:intergenic
GTTCTGGTTTCTTGAAGTTC+TGG 0.330899 8_3:-15445804 Msa1278840:CDS
ATCAATGTTGGTTAATTGAT+TGG 0.335483 8_3:+15442968 None:intergenic
TGGGGTGGTTACAGCATCAT+TGG 0.340318 8_3:-15444761 Msa1278840:CDS
AGGAAGATAGTGAGAAAGTT+AGG 0.341575 8_3:+15448061 None:intergenic
TGTACAAATTAATGTCGTTC+TGG 0.347090 8_3:-15445820 Msa1278840:CDS
TTTCTTATATGACATCTTAT+GGG 0.349788 8_3:-15445017 Msa1278840:CDS
AATTCTTAGAATGGTTTCAT+TGG 0.353819 8_3:-15447953 Msa1278840:exon
TTGTGAGAATAACTTTGTTC+TGG 0.354785 8_3:-15447824 Msa1278840:intron
GTGTGGGCAATGACTGCTTA+TGG 0.356128 8_3:-15444258 Msa1278840:CDS
TTGTAGCAAGCCTAAGAATA+AGG 0.358188 8_3:-15447016 Msa1278840:intron
GTGCTTCTTATTGGTCTGCT+TGG 0.367692 8_3:-15446212 Msa1278840:CDS
TTCTCACAACCAGGCCTTGT+TGG 0.370906 8_3:+15447838 None:intergenic
TTTCGGGGACATTATCTTAC+CGG 0.373048 8_3:-15444738 Msa1278840:CDS
TACCACGTTTGTTTGATCCT+TGG 0.389231 8_3:-15444781 Msa1278840:CDS
TGGTTAACTTCTTCAATATG+AGG 0.390926 8_3:+15442988 None:intergenic
GTCCATGCTATCAAATCATT+TGG 0.392210 8_3:+15442843 None:intergenic
TGCACCGACGCCAACATATT+CGG 0.393329 8_3:+15447116 None:intergenic
GTAGTTTATGTGTTTCTGTT+TGG 0.394517 8_3:-15447910 Msa1278840:CDS
TCTTAGCTATTAGTTTATAT+AGG 0.394896 8_3:-15442929 Msa1278840:three_prime_UTR
TAAGGGTCTACAAACTTGTT+TGG 0.401736 8_3:-15445672 Msa1278840:intron
AAGAATCTTAATTCTTAGAA+TGG 0.401879 8_3:-15447962 Msa1278840:exon
TTTCTCTGCACAGGTAGCTC+GGG 0.403689 8_3:-15444846 Msa1278840:intron
TTGCTCAATAGCAGCTTCTC+TGG 0.407570 8_3:+15446185 None:intergenic
GTTGGCGTCGGTGCAAGATT+TGG 0.409281 8_3:-15447108 Msa1278840:CDS
ATTCTTAGAATGGTTTCATT+GGG 0.419905 8_3:-15447952 Msa1278840:exon
TTAGGCTTGCTACAACAATC+AGG 0.422579 8_3:+15447024 None:intergenic
TTCATCAGCTATATTTGCCT+TGG 0.424615 8_3:+15446800 None:intergenic
CATGACAACTCTAGTATGAT+TGG 0.435387 8_3:+15447056 None:intergenic
GTTTGGCGGCTCTATTATCA+TGG 0.437582 8_3:-15445655 Msa1278840:intron
CCACACCATCAATCCAAGTT+GGG 0.441766 8_3:+15447145 None:intergenic
AAAGTCCCAACTTGGATTGA+TGG 0.441839 8_3:-15447150 Msa1278840:CDS
ACAAGATGCTGGATTAAACT+TGG 0.448478 8_3:-15446492 Msa1278840:CDS
GTACTCTCCACTTCGTCCAT+TGG 0.449661 8_3:-15446286 Msa1278840:CDS
GCAATGACTGCTTATGGTCT+AGG 0.461735 8_3:-15444252 Msa1278840:intron
GTTATGCTTCCACAAGATGC+TGG 0.462553 8_3:-15446503 Msa1278840:CDS
GTTAGGTCAAAGTCCCAACT+TGG 0.470294 8_3:-15447158 Msa1278840:intron
GTAACAGCAAGTGTCAGATA+TGG 0.481241 8_3:+15445485 None:intergenic
ATCTTGACATATGTTTGTGC+AGG 0.481494 8_3:+15445527 None:intergenic
TTTGTTTGGAGAGAAAATAA+AGG 0.482312 8_3:+15448041 None:intergenic
TATACTTACCAAGTGTAAAT+GGG 0.486632 8_3:+15443871 None:intergenic
TCCACACCATCAATCCAAGT+TGG 0.493462 8_3:+15447144 None:intergenic
GTGCACCAAAATGATCTCAT+TGG 0.493592 8_3:+15446845 None:intergenic
CAAGTTATTGTAGTTTCAGA+TGG 0.495005 8_3:-15445559 Msa1278840:intron
GGGTCTACAAACTTGTTTGG+CGG 0.497353 8_3:-15445669 Msa1278840:CDS
CAAGCATCATACGCGTGGAT+TGG 0.501545 8_3:-15445419 Msa1278840:CDS
TGTCTGTACTATTGATTCAA+AGG 0.502391 8_3:+15442411 None:intergenic
CTATATAGAGCAAAGCTGGC+TGG 0.507003 8_3:+15443895 None:intergenic
TTCGGGGACATTATCTTACC+GGG 0.511477 8_3:-15444737 Msa1278840:CDS
TGCAAGATTTGGTCCTACAT+TGG 0.513388 8_3:-15447097 Msa1278840:CDS
GATGAGGATGGCTGAAGCAC+CGG 0.516902 8_3:+15446776 None:intergenic
CTCATCATAAACTATCGTAC+AGG 0.518541 8_3:-15446759 Msa1278840:intron
TAATGTTACATCACACGATA+GGG 0.519328 8_3:+15442785 None:intergenic
CACAGACGACGATTCAAAAG+AGG 0.521342 8_3:-15442635 Msa1278840:three_prime_UTR
TCGTCCATTGGTTGATGTTG+CGG 0.521538 8_3:-15446274 Msa1278840:CDS
CTGGTTTCTTGAAGTTCTGG+TGG 0.522153 8_3:-15445801 Msa1278840:CDS
TTAATGTTACATCACACGAT+AGG 0.523570 8_3:+15442784 None:intergenic
AAGTGGAGAGTACAACTGTA+TGG 0.524238 8_3:+15446296 None:intergenic
GCAAAGAAGAACCTCCGAGC+TGG 0.526351 8_3:-15444288 Msa1278840:CDS
GGGACTATATAGAGCAAAGC+TGG 0.526557 8_3:+15443891 None:intergenic
GGGTGTTCGTTTCTAAATGG+TGG 0.527404 8_3:-15444997 Msa1278840:CDS
AAGTTTAATCCAGCATCTTG+TGG 0.531321 8_3:+15446494 None:intergenic
TTAGGAGAAGGAAGTGACGG+TGG 0.531370 8_3:+15448079 None:intergenic
CACAACAAGAATAACATGAA+TGG 0.534418 8_3:+15442508 None:intergenic
GTCGCTTTAAACTTGATGGA+TGG 0.538119 8_3:-15443924 Msa1278840:CDS
CTTCTGAGATAGCAAGTTGG+AGG 0.542806 8_3:-15442751 Msa1278840:three_prime_UTR
AAGTTAGGAGAAGGAAGTGA+CGG 0.543039 8_3:+15448076 None:intergenic
TCATGAGAGCGTGATGATAG+TGG 0.543810 8_3:-15444972 Msa1278840:intron
CGTGGTAACTTGAGAAGCAT+GGG 0.546674 8_3:+15444797 None:intergenic
ATAGTGAGAAAGTTAGGAGA+AGG 0.550693 8_3:+15448067 None:intergenic
GATGTTGCTCCAACAAGGCC+TGG 0.550767 8_3:-15447847 Msa1278840:CDS
CACTGCAAATACTATGCAGA+AGG 0.550804 8_3:+15445460 None:intergenic
AATGAAACTGATGTTGACAT+TGG 0.558103 8_3:-15446536 Msa1278840:CDS
TTATGAAGAAGAACAAAAGA+AGG 0.558660 8_3:+15447996 None:intergenic
GAAAATGCTACTACAAGTCC+CGG 0.560919 8_3:+15444719 None:intergenic
ACGTGGTAACTTGAGAAGCA+TGG 0.564772 8_3:+15444796 None:intergenic
ACATATACACAATGTTCTAA+CGG 0.575221 8_3:+15442893 None:intergenic
GCAAATATAGCTGATGAAGC+CGG 0.576888 8_3:-15446795 Msa1278840:CDS
CTTCTTCTGAGATAGCAAGT+TGG 0.578048 8_3:-15442754 Msa1278840:three_prime_UTR
CCACGTTTGTTTGATCCTTG+GGG 0.578234 8_3:-15444779 Msa1278840:CDS
CAATCATACTAGAGTTGTCA+TGG 0.579681 8_3:-15447055 Msa1278840:CDS
GCAGAAAGTGTTGGTTCTCG+TGG 0.579848 8_3:-15445911 Msa1278840:CDS
CCCAACTTGGATTGATGGTG+TGG 0.588257 8_3:-15447145 Msa1278840:CDS
TGTTGGTTCTCGTGGTTACG+TGG 0.588787 8_3:-15445903 Msa1278840:CDS
TATATAGTCCCATTTACACT+TGG 0.589134 8_3:-15443879 Msa1278840:intron
GGACAAGAGGAGAACCAGAA+AGG 0.592548 8_3:-15443017 Msa1278840:CDS
CTTCTGCATAGTATTTGCAG+TGG 0.594852 8_3:-15445459 Msa1278840:CDS
GTTTGTACTATGTAGGAATG+AGG 0.595557 8_3:+15448166 None:intergenic
AATCTGCTGAAGATCAATGT+TGG 0.596723 8_3:+15442956 None:intergenic
CGTTTGTTTGATCCTTGGGG+TGG 0.597198 8_3:-15444776 Msa1278840:CDS
TTCTCTGCACAGGTAGCTCG+GGG 0.597507 8_3:-15444845 Msa1278840:intron
TCCGAGCTGGATATTTCGTG+TGG 0.598486 8_3:-15444275 Msa1278840:CDS
TTGTCGTTGGGAAAGAAGAG+AGG 0.603580 8_3:-15443057 Msa1278840:CDS
AGCCAAATGATTTGATAGCA+TGG 0.603795 8_3:-15442845 Msa1278840:three_prime_UTR
AGAAGACTCTCATGGAAGCA+AGG 0.604334 8_3:+15442690 None:intergenic
TCTTGTGGAAGCATAACAGC+AGG 0.606664 8_3:+15446509 None:intergenic
TTACAGCATCATTGGTTTCG+GGG 0.610146 8_3:-15444753 Msa1278840:CDS
CCCACACGAAATATCCAGCT+CGG 0.612171 8_3:+15444274 None:intergenic
TGTTCGCATACCAAATCTCA+AGG 0.612517 8_3:-15445253 Msa1278840:intron
AGTATTTGCAGTGGTTTGGG+CGG 0.612976 8_3:-15445450 Msa1278840:CDS
AGCAAGTGTCAGATATGGAA+CGG 0.613995 8_3:+15445490 None:intergenic
GAATATGTTGCAGAAAGTGT+TGG 0.615196 8_3:-15445920 Msa1278840:CDS
ACATCAACCAATGGACGAAG+TGG 0.617248 8_3:+15446279 None:intergenic
ACAGACGACGATTCAAAAGA+GGG 0.617505 8_3:-15442634 Msa1278840:three_prime_UTR
ATGATGATGTTGCTCCAACA+AGG 0.618511 8_3:-15447852 Msa1278840:CDS
TATGGAACGGCTCCAAAGAA+CGG 0.619684 8_3:+15445503 None:intergenic
GTGGAAAACGCCGAATATGT+TGG 0.624145 8_3:-15447126 Msa1278840:CDS
AAAATGTAGTTTCACAACCA+AGG 0.628218 8_3:-15446817 Msa1278840:CDS
CACATACAAAATAACTCCAT+AGG 0.631134 8_3:-15446464 Msa1278840:intron
GGTGATAAGAGTGGAGAAGA+CGG 0.633523 8_3:-15444824 Msa1278840:CDS
AACGACAAGCATCATACGCG+TGG 0.636572 8_3:-15445424 Msa1278840:CDS
TTAAACTTGATGGATGGACA+TGG 0.640581 8_3:-15443918 Msa1278840:CDS
GTAGCTCGGGGTGATAAGAG+TGG 0.642633 8_3:-15444833 Msa1278840:CDS
TTAAAGCGACATATGTGATG+AGG 0.646719 8_3:+15443937 None:intergenic
ACTTCCGCAACATCAACCAA+TGG 0.654114 8_3:+15446270 None:intergenic
AACGCCGAATATGTTGGCGT+CGG 0.656966 8_3:-15447120 Msa1278840:CDS
CTGTACGATAGTTTATGATG+AGG 0.659345 8_3:+15446760 None:intergenic
ACGATAGTTTATGATGAGGA+TGG 0.661175 8_3:+15446764 None:intergenic
ACAAAGTTATTCTCACAACC+AGG 0.666217 8_3:+15447829 None:intergenic
CCGAGCTGGATATTTCGTGT+GGG 0.666995 8_3:-15444274 Msa1278840:CDS
ACTGCAAATACTATGCAGAA+GGG 0.683125 8_3:+15445461 None:intergenic
CCCCAAGGATCAAACAAACG+TGG 0.683397 8_3:+15444779 None:intergenic
GGCTTGCTACAACAATCAGG+AGG 0.689982 8_3:+15447027 None:intergenic
ATGATGCTGTAACCACCCCA+AGG 0.696121 8_3:+15444764 None:intergenic
ACACGAAATATCCAGCTCGG+AGG 0.740591 8_3:+15444277 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATTAATGTTATTAATT+TGG + chr8_3:15442475-15442494 None:intergenic 10.0%
!!! GTTTTTTTTTTATATTTGTT+TGG + chr8_3:15442569-15442588 None:intergenic 10.0%
!! TATATGAAGAATAAAAAATT+TGG + chr8_3:15442797-15442816 None:intergenic 10.0%
!!! AAAATCATTTTTTTTAATTC+AGG - chr8_3:15442923-15442942 Msa1278840:three_prime_UTR 10.0%
!!! AATTCTTTTATAATTGTTTT+TGG - chr8_3:15442975-15442994 Msa1278840:CDS 10.0%
!!! AATTTTTTACATTAAAATGT+AGG + chr8_3:15446139-15446158 None:intergenic 10.0%
!! TATTTATAAACTCGTTAATT+TGG - chr8_3:15444605-15444624 Msa1278840:intron 15.0%
!! ATTAAGATAGATTATAGAAA+CGG + chr8_3:15446041-15446060 None:intergenic 15.0%
!! ATAAAAAACTGAAATAATGA+TGG + chr8_3:15446580-15446599 None:intergenic 15.0%
!!! TTTCAGTTTTTTATAGTAAT+CGG - chr8_3:15446586-15446605 Msa1278840:intron 15.0%
!!! TAAGTTCTTATTTACATATA+TGG - chr8_3:15447257-15447276 Msa1278840:intron 15.0%
!! AAGAATCTTAATTCTTAGAA+TGG - chr8_3:15442631-15442650 Msa1278840:three_prime_UTR 20.0%
!! TTAATTCAGGAAAGAAAAAT+TGG - chr8_3:15442936-15442955 Msa1278840:three_prime_UTR 20.0%
!!! TTTGAACTTTCTGTTTTTTA+AGG - chr8_3:15443005-15443024 Msa1278840:CDS 20.0%
!!! TTGAACTTTCTGTTTTTTAA+GGG - chr8_3:15443006-15443025 Msa1278840:CDS 20.0%
!!! ATCATATCATTTTCAATAAC+AGG + chr8_3:15443247-15443266 None:intergenic 20.0%
!!! AATTAGTTGTTGATTTTCTT+TGG - chr8_3:15444188-15444207 Msa1278840:intron 20.0%
!!! TATCTTTTAGTGTGAAAAAA+TGG + chr8_3:15444470-15444489 None:intergenic 20.0%
!!! TTAATTTGGTTACTGATATA+TGG - chr8_3:15444619-15444638 Msa1278840:intron 20.0%
!!! TGATATATGGATAACTTTTA+TGG - chr8_3:15444632-15444651 Msa1278840:intron 20.0%
!! ATGAACATACAAATATTAGA+GGG + chr8_3:15444895-15444914 None:intergenic 20.0%
!! TATGAACATACAAATATTAG+AGG + chr8_3:15444896-15444915 None:intergenic 20.0%
!! ATAACAGTATTAAAAGTCTA+GGG + chr8_3:15445262-15445281 None:intergenic 20.0%
!! TTTCTTATATGACATCTTAT+GGG - chr8_3:15445576-15445595 Msa1278840:intron 20.0%
!!! TATATTTCTATCTTCACTTA+TGG - chr8_3:15446423-15446442 Msa1278840:intron 20.0%
!! AAATTTAGAGACGAAAAAAT+AGG - chr8_3:15446476-15446495 Msa1278840:CDS 20.0%
!! ATAAAATTGGTCATCAAATT+TGG + chr8_3:15446540-15446559 None:intergenic 20.0%
!! TTTCAAATTTATGAGTAAGA+TGG + chr8_3:15446749-15446768 None:intergenic 20.0%
!! CTATTCTTCAATGTATTATT+TGG - chr8_3:15446792-15446811 Msa1278840:CDS 20.0%
!!! TTCTTATTTACATATATGGA+TGG - chr8_3:15447261-15447280 Msa1278840:intron 20.0%
!!! TCTTAGCTATTAGTTTATAT+AGG - chr8_3:15447664-15447683 Msa1278840:intron 20.0%
!!! ATAATCAATATTCTAGTTGA+TGG - chr8_3:15447880-15447899 Msa1278840:CDS 20.0%
!!! TTTTGTTGTTTGTACTATGT+AGG + chr8_3:15442437-15442456 None:intergenic 25.0%
! TTTGTTTGGAGAGAAAATAA+AGG + chr8_3:15442555-15442574 None:intergenic 25.0%
! TTATGAAGAAGAACAAAAGA+AGG + chr8_3:15442600-15442619 None:intergenic 25.0%
! AATTCTTAGAATGGTTTCAT+TGG - chr8_3:15442640-15442659 Msa1278840:three_prime_UTR 25.0%
! ATTCTTAGAATGGTTTCATT+GGG - chr8_3:15442641-15442660 Msa1278840:three_prime_UTR 25.0%
!!! TTTATGTGTGATTTTGATCT+TGG - chr8_3:15442839-15442858 Msa1278840:three_prime_UTR 25.0%
! TTAGAAAATAGAGTGTAGTT+AGG - chr8_3:15443287-15443306 Msa1278840:intron 25.0%
! AACAAAATCTGCAAATGTAT+TGG - chr8_3:15443347-15443366 Msa1278840:intron 25.0%
!! AAGTAAACTTTTATGCAATG+TGG - chr8_3:15443390-15443409 Msa1278840:intron 25.0%
!!! TTTTCTTTTGATTCCAATGT+AGG + chr8_3:15443512-15443531 None:intergenic 25.0%
! ACTCAAAATACCTTATTCTT+AGG + chr8_3:15443590-15443609 None:intergenic 25.0%
!!! TTGAGTTCATTTTTAAACCA+TGG - chr8_3:15443604-15443623 Msa1278840:intron 25.0%
! AATAATAAAGCTTTCGATCT+TGG + chr8_3:15443670-15443689 None:intergenic 25.0%
!! TAAATACGTATTTTGTCCTA+TGG - chr8_3:15443968-15443987 Msa1278840:intron 25.0%
! AAATAGAGACAAACAATAAC+CGG - chr8_3:15444544-15444563 Msa1278840:intron 25.0%
! TTGTATGTTCATATGCTTTA+AGG - chr8_3:15444903-15444922 Msa1278840:intron 25.0%
! TGTATGTTCATATGCTTTAA+GGG - chr8_3:15444904-15444923 Msa1278840:intron 25.0%
! TCAATTCGGATAGAAATAAT+AGG + chr8_3:15445011-15445030 None:intergenic 25.0%
! GATAACAGTATTAAAAGTCT+AGG + chr8_3:15445263-15445282 None:intergenic 25.0%
! TTTCACATATACTTCTTTCT+TGG - chr8_3:15445521-15445540 Msa1278840:CDS 25.0%
! CTTTCTTATATGACATCTTA+TGG - chr8_3:15445575-15445594 Msa1278840:intron 25.0%
! AAAATGTCACACTAACTTTA+AGG + chr8_3:15445730-15445749 None:intergenic 25.0%
! GATCATACAATATATGTATC+TGG - chr8_3:15445917-15445936 Msa1278840:CDS 25.0%
! ATAATAATAAGATGACCAGA+AGG + chr8_3:15445943-15445962 None:intergenic 25.0%
!! CTATGTCGATATGTATTTTA+CGG + chr8_3:15446171-15446190 None:intergenic 25.0%
! ATTGTACTGTATCATGTTAA+CGG - chr8_3:15446229-15446248 Msa1278840:CDS 25.0%
! ATACAAAATGTGAATGTCTA+CGG - chr8_3:15446394-15446413 Msa1278840:intron 25.0%
!! ACTGAAATAATGATGGAAAT+TGG + chr8_3:15446573-15446592 None:intergenic 25.0%
!!! TTCGTTGAATTTTAATATGC+AGG - chr8_3:15446630-15446649 Msa1278840:intron 25.0%
! TATACTTACCAAGTGTAAAT+GGG + chr8_3:15446725-15446744 None:intergenic 25.0%
! TTATACTTACCAAGTGTAAA+TGG + chr8_3:15446726-15446745 None:intergenic 25.0%
! ATGTGAACAGATCATATTAA+TGG + chr8_3:15446865-15446884 None:intergenic 25.0%
! CTCATTTACAATGAAATAAC+CGG - chr8_3:15447008-15447027 Msa1278840:intron 25.0%
!!! TTTTTAGAAAACATTGGGAA+AGG + chr8_3:15447044-15447063 None:intergenic 25.0%
!!! GTGGATTTTTAGAAAACATT+GGG + chr8_3:15447049-15447068 None:intergenic 25.0%
!!! TGTGGATTTTTAGAAAACAT+TGG + chr8_3:15447050-15447069 None:intergenic 25.0%
!!! TGATTTTAGTTTCCAATAGA+TGG - chr8_3:15447313-15447332 Msa1278840:intron 25.0%
!! ATCAATGTTGGTTAATTGAT+TGG + chr8_3:15447628-15447647 None:intergenic 25.0%
! ACATATACACAATGTTCTAA+CGG + chr8_3:15447703-15447722 None:intergenic 25.0%
! GTAGTTTATGTGTTTCTGTT+TGG - chr8_3:15442683-15442702 Msa1278840:three_prime_UTR 30.0%
TTGTGAGAATAACTTTGTTC+TGG - chr8_3:15442769-15442788 Msa1278840:three_prime_UTR 30.0%
GAAAGAAAAATTGGACTGTT+TGG - chr8_3:15442945-15442964 Msa1278840:three_prime_UTR 30.0%
!! TAAGTTCTTCTGAGACTATT+TGG - chr8_3:15443059-15443078 Msa1278840:CDS 30.0%
TTTGGTAGGACTTATGAAAA+TGG - chr8_3:15443077-15443096 Msa1278840:intron 30.0%
ATAGAGTGTAGTTAGGTAAT+TGG - chr8_3:15443294-15443313 Msa1278840:intron 30.0%
TGCTAACAAAATGTTCTGTT+AGG - chr8_3:15443418-15443437 Msa1278840:intron 30.0%
TGGTAATATGCTTCACAATT+CGG + chr8_3:15443650-15443669 None:intergenic 30.0%
! TTGTGAAACTACATTTTCCT+CGG + chr8_3:15443773-15443792 None:intergenic 30.0%
AAAATGTAGTTTCACAACCA+AGG - chr8_3:15443776-15443795 Msa1278840:intron 30.0%
AATGAAACTGATGTTGACAT+TGG - chr8_3:15444057-15444076 Msa1278840:intron 30.0%
CACATACAAAATAACTCCAT+AGG - chr8_3:15444129-15444148 Msa1278840:intron 30.0%
!!! TTGTTGATTTTCTTTGGCAT+AGG - chr8_3:15444194-15444213 Msa1278840:intron 30.0%
TGTACATGCAATAGAACAAA+GGG + chr8_3:15444259-15444278 None:intergenic 30.0%
TTGTACATGCAATAGAACAA+AGG + chr8_3:15444260-15444279 None:intergenic 30.0%
! CCAATAAGAAGCACATAAAA+TGG + chr8_3:15444375-15444394 None:intergenic 30.0%
! CCATTTTATGTGCTTCTTAT+TGG - chr8_3:15444372-15444391 Msa1278840:intron 30.0%
AAATGGCATGAAAAGAAACT+AGG + chr8_3:15444453-15444472 None:intergenic 30.0%
AATAGAGACAAACAATAACC+GGG - chr8_3:15444545-15444564 Msa1278840:intron 30.0%
ACATAAAAAACACTTTCTCC+CGG + chr8_3:15444566-15444585 None:intergenic 30.0%
TGTACAAATTAATGTCGTTC+TGG - chr8_3:15444773-15444792 Msa1278840:CDS 30.0%
ATCTACAACAACAAACTTCA+AGG + chr8_3:15444976-15444995 None:intergenic 30.0%
!! GTTTGTTGTTGTAGATTATG+AGG - chr8_3:15444980-15444999 Msa1278840:CDS 30.0%
!! ACAATAACTTGCTGTCAATT+CGG + chr8_3:15445025-15445044 None:intergenic 30.0%
CAAGTTATTGTAGTTTCAGA+TGG - chr8_3:15445034-15445053 Msa1278840:CDS 30.0%
ATTTCTTATGACTGTCATTC+AGG - chr8_3:15445286-15445305 Msa1278840:CDS 30.0%
TTTCTTATGACTGTCATTCA+GGG - chr8_3:15445287-15445306 Msa1278840:CDS 30.0%
TTACATGTTTGTGATACTCT+TGG - chr8_3:15445402-15445421 Msa1278840:intron 30.0%
TATACTTCTTTCTTGGTATC+AGG - chr8_3:15445528-15445547 Msa1278840:CDS 30.0%
CCACTAGTATAGAACAATTT+AGG + chr8_3:15445680-15445699 None:intergenic 30.0%
CCTAAATTGTTCTATACTAG+TGG - chr8_3:15445677-15445696 Msa1278840:intron 30.0%
AAGGCCAAACTAATGTATTT+GGG + chr8_3:15445711-15445730 None:intergenic 30.0%
TAAGGCCAAACTAATGTATT+TGG + chr8_3:15445712-15445731 None:intergenic 30.0%
!! AGTTGTTTCTACAATTGAAC+AGG - chr8_3:15445980-15445999 Msa1278840:intron 30.0%
! ATATGTATTTTACGGACGTT+TGG + chr8_3:15446163-15446182 None:intergenic 30.0%
CGTAAAATACATATCGACAT+AGG - chr8_3:15446169-15446188 Msa1278840:intron 30.0%
ATAGGATCTCCATGTAAAAT+AGG - chr8_3:15446187-15446206 Msa1278840:CDS 30.0%
! CTACTTGTACCTATTTTACA+TGG + chr8_3:15446199-15446218 None:intergenic 30.0%
!! CTATTGACAACTACTTTTAC+AGG - chr8_3:15446270-15446289 Msa1278840:CDS 30.0%
!! ACTACTTTTACAGGTATGAT+TGG - chr8_3:15446279-15446298 Msa1278840:CDS 30.0%
ATTTCTATCTTCACTTATGG+AGG - chr8_3:15446426-15446445 Msa1278840:intron 30.0%
TGGAGACGGAAAAATAAAAT+TGG + chr8_3:15446553-15446572 None:intergenic 30.0%
! ATAATGATGGAAATTGGAGA+CGG + chr8_3:15446567-15446586 None:intergenic 30.0%
!! ATATGTCGCTTTAAACTTGA+TGG - chr8_3:15446665-15446684 Msa1278840:intron 30.0%
TATATAGTCCCATTTACACT+TGG - chr8_3:15446714-15446733 Msa1278840:intron 30.0%
TAAAAATCCACATAGACGTT+TGG - chr8_3:15447058-15447077 Msa1278840:CDS 30.0%
TATACTTCCGAACTAACTAT+AGG - chr8_3:15447163-15447182 Msa1278840:intron 30.0%
ATACTTCCGAACTAACTATA+GGG - chr8_3:15447164-15447183 Msa1278840:intron 30.0%
TCTACATTATTGCCATCTAT+TGG + chr8_3:15447328-15447347 None:intergenic 30.0%
GTACCGAAAAAACAGTAAAT+TGG - chr8_3:15447359-15447378 Msa1278840:intron 30.0%
!!! GGACCAATTTACTGTTTTTT+CGG + chr8_3:15447365-15447384 None:intergenic 30.0%
ACTAAATGTATGCTATGTCA+TGG + chr8_3:15447446-15447465 None:intergenic 30.0%
TTATTGCATGACATGAAAAC+TGG - chr8_3:15447465-15447484 Msa1278840:intron 30.0%
GTCATGTAAATCATAATTGC+AGG - chr8_3:15447506-15447525 Msa1278840:intron 30.0%
TGGTTAACTTCTTCAATATG+AGG + chr8_3:15447608-15447627 None:intergenic 30.0%
TAATGTTACATCACACGATA+GGG + chr8_3:15447811-15447830 None:intergenic 30.0%
TTAATGTTACATCACACGAT+AGG + chr8_3:15447812-15447831 None:intergenic 30.0%
AAAGAGGGAAGACTAATAAA+AGG - chr8_3:15447974-15447993 Msa1278840:five_prime_UTR 30.0%
CACAACAAGAATAACATGAA+TGG + chr8_3:15448088-15448107 None:intergenic 30.0%
GTTTGTACTATGTAGGAATG+AGG + chr8_3:15442430-15442449 None:intergenic 35.0%
ATAGTGAGAAAGTTAGGAGA+AGG + chr8_3:15442529-15442548 None:intergenic 35.0%
AGGAAGATAGTGAGAAAGTT+AGG + chr8_3:15442535-15442554 None:intergenic 35.0%
ACAAAGTTATTCTCACAACC+AGG + chr8_3:15442767-15442786 None:intergenic 35.0%
TTTGCTTGCTTAGAAACTGT+TGG - chr8_3:15442870-15442889 Msa1278840:three_prime_UTR 35.0%
AGAAAAATTGGACTGTTTGG+TGG - chr8_3:15442948-15442967 Msa1278840:three_prime_UTR 35.0%
GAAAAATTGGACTGTTTGGT+GGG - chr8_3:15442949-15442968 Msa1278840:three_prime_UTR 35.0%
!! TTCTTCTGAGACTATTTGGT+AGG - chr8_3:15443063-15443082 Msa1278840:CDS 35.0%
AATTGAGCATACATCACACA+AGG + chr8_3:15443210-15443229 None:intergenic 35.0%
!! TCTGCAAATGTATTGGCTTA+TGG - chr8_3:15443354-15443373 Msa1278840:intron 35.0%
CATGACAACTCTAGTATGAT+TGG + chr8_3:15443540-15443559 None:intergenic 35.0%
CAATCATACTAGAGTTGTCA+TGG - chr8_3:15443538-15443557 Msa1278840:intron 35.0%
TTGTAGCAAGCCTAAGAATA+AGG - chr8_3:15443577-15443596 Msa1278840:intron 35.0%
AGTTGCATCTGTAAATTCCA+TGG + chr8_3:15443624-15443643 None:intergenic 35.0%
TTCATCAGCTATATTTGCCT+TGG + chr8_3:15443796-15443815 None:intergenic 35.0%
ACGATAGTTTATGATGAGGA+TGG + chr8_3:15443832-15443851 None:intergenic 35.0%
CTGTACGATAGTTTATGATG+AGG + chr8_3:15443836-15443855 None:intergenic 35.0%
CTCATCATAAACTATCGTAC+AGG - chr8_3:15443834-15443853 Msa1278840:intron 35.0%
TTATGCGTTTGTCCTATTCT+TGG - chr8_3:15443861-15443880 Msa1278840:intron 35.0%
TATGCGTTTGTCCTATTCTT+GGG - chr8_3:15443862-15443881 Msa1278840:intron 35.0%
CAATTATGATCCCCAAGAAT+AGG + chr8_3:15443876-15443895 None:intergenic 35.0%
! ATACGTATTTTGTCCTATGG+CGG - chr8_3:15443971-15443990 Msa1278840:intron 35.0%
TTGCTTAAAATAACCGCCAT+AGG + chr8_3:15443987-15444006 None:intergenic 35.0%
!! CTGTACAGAACTTTTCAAGA+TGG - chr8_3:15444023-15444042 Msa1278840:intron 35.0%
!! ACTTTTCAAGATGGTTTGTG+AGG - chr8_3:15444032-15444051 Msa1278840:intron 35.0%
AAGTTTAATCCAGCATCTTG+TGG + chr8_3:15444102-15444121 None:intergenic 35.0%
ACAAGATGCTGGATTAAACT+TGG - chr8_3:15444101-15444120 Msa1278840:intron 35.0%
ATAGGTATGCTCAACTTTCT+CGG - chr8_3:15444147-15444166 Msa1278840:intron 35.0%
GTACAACTGTATGGATACTT+AGG + chr8_3:15444291-15444310 None:intergenic 35.0%
! TGAGCAAGAGAAGCTTTTAA+AGG - chr8_3:15444424-15444443 Msa1278840:intron 35.0%
GAATGAATGAAATAACCACG+AGG - chr8_3:15444501-15444520 Msa1278840:intron 35.0%
AAGCAAATATCTTATCCTCG+TGG + chr8_3:15444519-15444538 None:intergenic 35.0%
! TGGATAACTTTTATGGTTGC+AGG - chr8_3:15444639-15444658 Msa1278840:intron 35.0%
! GAATATGTTGCAGAAAGTGT+TGG - chr8_3:15444673-15444692 Msa1278840:intron 35.0%
! TTTTTGCATTGGAGGAATAG+AGG - chr8_3:15444819-15444838 Msa1278840:CDS 35.0%
! TAAGGGTCTACAAACTTGTT+TGG - chr8_3:15444921-15444940 Msa1278840:intron 35.0%
ATCTTGACATATGTTTGTGC+AGG + chr8_3:15445069-15445088 None:intergenic 35.0%
TATGTCAAGATACCGTTCTT+TGG - chr8_3:15445078-15445097 Msa1278840:intron 35.0%
ACTGCAAATACTATGCAGAA+GGG + chr8_3:15445135-15445154 None:intergenic 35.0%
CATAGTATTTGCAGTGGTTT+GGG - chr8_3:15445140-15445159 Msa1278840:intron 35.0%
TGGAATCATACCTTGAGATT+TGG + chr8_3:15445353-15445372 None:intergenic 35.0%
ATGATTCCAAAGTCAACCTT+AGG - chr8_3:15445364-15445383 Msa1278840:intron 35.0%
TGATTCCAAAGTCAACCTTA+GGG - chr8_3:15445365-15445384 Msa1278840:intron 35.0%
TCGGTTTAGCTGTTCATTAA+TGG + chr8_3:15445443-15445462 None:intergenic 35.0%
! CCATCACATCAACATTTTGT+CGG + chr8_3:15445462-15445481 None:intergenic 35.0%
! ATGGCTTTGCTTGATACTAT+TGG - chr8_3:15445478-15445497 Msa1278840:CDS 35.0%
TTCTTTCTTGGTATCAGGTT+GGG - chr8_3:15445533-15445552 Msa1278840:CDS 35.0%
TATGGGTGTTCGTTTCTAAA+TGG - chr8_3:15445593-15445612 Msa1278840:intron 35.0%
CCAAACTAATGTATTTGGGT+TGG + chr8_3:15445707-15445726 None:intergenic 35.0%
CCAACCCAAATACATTAGTT+TGG - chr8_3:15445704-15445723 Msa1278840:intron 35.0%
! TTGTAGTAGCATTTTCACTG+AGG - chr8_3:15445881-15445900 Msa1278840:CDS 35.0%
! AATATATGTATCTGGCCTTC+TGG - chr8_3:15445925-15445944 Msa1278840:CDS 35.0%
! CTTTTACAGGTATGATTGGT+TGG - chr8_3:15446283-15446302 Msa1278840:CDS 35.0%
TAGGTATGATACACATGCTT+TGG - chr8_3:15446360-15446379 Msa1278840:intron 35.0%
AGGTATGATACACATGCTTT+GGG - chr8_3:15446361-15446380 Msa1278840:intron 35.0%
TTAAAGCGACATATGTGATG+AGG + chr8_3:15446659-15446678 None:intergenic 35.0%
! TTAAACTTGATGGATGGACA+TGG - chr8_3:15446675-15446694 Msa1278840:intron 35.0%
! GAAAGTGTAAACACCTATAG+TGG - chr8_3:15446765-15446784 Msa1278840:CDS 35.0%
GAAGAATAGAATGCCACTAT+AGG + chr8_3:15446781-15446800 None:intergenic 35.0%
ATTATTTGGTTGCGCTCTAT+TGG - chr8_3:15446806-15446825 Msa1278840:CDS 35.0%
AAGACGATAAAGAGTTGTGT+TGG - chr8_3:15446901-15446920 Msa1278840:intron 35.0%
AACGCAGCATATAATTAGCA+CGG + chr8_3:15446987-15447006 None:intergenic 35.0%
TTAGAAAACATTGGGAAAGG+AGG + chr8_3:15447041-15447060 None:intergenic 35.0%
TATACTTCCAAACGTCTATG+TGG + chr8_3:15447068-15447087 None:intergenic 35.0%
! TTGGAAGTATACTTCTTGAC+AGG - chr8_3:15447077-15447096 Msa1278840:CDS 35.0%
! TGGAAGTATACTTCTTGACA+GGG - chr8_3:15447078-15447097 Msa1278840:CDS 35.0%
!! GGAAAAACTGTGTTTTTGTC+CGG - chr8_3:15447099-15447118 Msa1278840:CDS 35.0%
TACTTCCGAACTAACTATAG+GGG - chr8_3:15447165-15447184 Msa1278840:intron 35.0%
TCATGCAGTGTGTTTATTTC+GGG + chr8_3:15447206-15447225 None:intergenic 35.0%
GTCATGCAGTGTGTTTATTT+CGG + chr8_3:15447207-15447226 None:intergenic 35.0%
TAGATGGCAATAATGTAGAC+TGG - chr8_3:15447329-15447348 Msa1278840:intron 35.0%
!!! TACTGTTTTTTCGGTACACA+AGG + chr8_3:15447356-15447375 None:intergenic 35.0%
! CTCAAGATTTTATGGACAAG+AGG - chr8_3:15447563-15447582 Msa1278840:intron 35.0%
AATCTGCTGAAGATCAATGT+TGG + chr8_3:15447640-15447659 None:intergenic 35.0%
! AGCCAAATGATTTGATAGCA+TGG - chr8_3:15447748-15447767 Msa1278840:intron 35.0%
GTCCATGCTATCAAATCATT+TGG + chr8_3:15447753-15447772 None:intergenic 35.0%
!! GAATTTTGAGAAGACTCTCA+TGG + chr8_3:15447914-15447933 None:intergenic 35.0%
AAGTTAGGAGAAGGAAGTGA+CGG + chr8_3:15442520-15442539 None:intergenic 40.0%
!! GTTTCTGTTTGGTGTGTCTT+TGG - chr8_3:15442694-15442713 Msa1278840:three_prime_UTR 40.0%
!!! GTTTGGTGTGTCTTTGGTTT+TGG - chr8_3:15442700-15442719 Msa1278840:three_prime_UTR 40.0%
! ATGATGATGTTGCTCCAACA+AGG - chr8_3:15442741-15442760 Msa1278840:three_prime_UTR 40.0%
GTTGGAACAGTCAAGAGATT+TGG - chr8_3:15442888-15442907 Msa1278840:three_prime_UTR 40.0%
AAAGTCCCAACTTGGATTGA+TGG - chr8_3:15443443-15443462 Msa1278840:intron 40.0%
! TGCAAGATTTGGTCCTACAT+TGG - chr8_3:15443496-15443515 Msa1278840:intron 40.0%
!! TTAGGCTTGCTACAACAATC+AGG + chr8_3:15443572-15443591 None:intergenic 40.0%
! GCTCACCAATGAGATCATTT+TGG - chr8_3:15443743-15443762 Msa1278840:intron 40.0%
GTGCACCAAAATGATCTCAT+TGG + chr8_3:15443751-15443770 None:intergenic 40.0%
GCAAATATAGCTGATGAAGC+CGG - chr8_3:15443798-15443817 Msa1278840:intron 40.0%
ATGCGTTTGTCCTATTCTTG+GGG - chr8_3:15443863-15443882 Msa1278840:intron 40.0%
GAGAAAGTTGAGCATACCTA+TGG + chr8_3:15444148-15444167 None:intergenic 40.0%
! AAGTGGAGAGTACAACTGTA+TGG + chr8_3:15444300-15444319 None:intergenic 40.0%
!!! ATGTTGCGGAAGTGTTTTTG+TGG - chr8_3:15444333-15444352 Msa1278840:intron 40.0%
!!! GGAAGTGTTTTTGTGGCTTA+TGG - chr8_3:15444340-15444359 Msa1278840:intron 40.0%
! TTTTTGTGGCTTATGGCTGT+CGG - chr8_3:15444347-15444366 Msa1278840:intron 40.0%
!! GTTCTGGTTTCTTGAAGTTC+TGG - chr8_3:15444789-15444808 Msa1278840:CDS 40.0%
!!! CTGGTGGTTCTTTTTTGCAT+TGG - chr8_3:15444808-15444827 Msa1278840:CDS 40.0%
!!! GTGGTTCTTTTTTGCATTGG+AGG - chr8_3:15444811-15444830 Msa1278840:CDS 40.0%
AGCAAGTGTCAGATATGGAA+CGG + chr8_3:15445106-15445125 None:intergenic 40.0%
GTAACAGCAAGTGTCAGATA+TGG + chr8_3:15445111-15445130 None:intergenic 40.0%
CACTGCAAATACTATGCAGA+AGG + chr8_3:15445136-15445155 None:intergenic 40.0%
CTTCTGCATAGTATTTGCAG+TGG - chr8_3:15445134-15445153 Msa1278840:intron 40.0%
GCATAGTATTTGCAGTGGTT+TGG - chr8_3:15445139-15445158 Msa1278840:intron 40.0%
TGTTCGCATACCAAATCTCA+AGG - chr8_3:15445340-15445359 Msa1278840:intron 40.0%
CCGACAAAATGTTGATGTGA+TGG - chr8_3:15445459-15445478 Msa1278840:CDS 40.0%
CTTCTTTCTTGGTATCAGGT+TGG - chr8_3:15445532-15445551 Msa1278840:CDS 40.0%
TACCACGTTTGTTTGATCCT+TGG - chr8_3:15445812-15445831 Msa1278840:CDS 40.0%
ACCACGTTTGTTTGATCCTT+GGG - chr8_3:15445813-15445832 Msa1278840:CDS 40.0%
!! GGTTACAGCATCATTGGTTT+CGG - chr8_3:15445838-15445857 Msa1278840:CDS 40.0%
!! GTTACAGCATCATTGGTTTC+GGG - chr8_3:15445839-15445858 Msa1278840:CDS 40.0%
!! TTACAGCATCATTGGTTTCG+GGG - chr8_3:15445840-15445859 Msa1278840:CDS 40.0%
TTTCGGGGACATTATCTTAC+CGG - chr8_3:15445855-15445874 Msa1278840:CDS 40.0%
GAAAATGCTACTACAAGTCC+CGG + chr8_3:15445877-15445896 None:intergenic 40.0%
! AGTAGCATTTTCACTGAGGT+TGG - chr8_3:15445885-15445904 Msa1278840:CDS 40.0%
GAGAGCTTATGTCGTGTTTA+CGG + chr8_3:15446012-15446031 None:intergenic 40.0%
GGTATGATACACATGCTTTG+GGG - chr8_3:15446362-15446381 Msa1278840:intron 40.0%
! GTCGCTTTAAACTTGATGGA+TGG - chr8_3:15446669-15446688 Msa1278840:intron 40.0%
GGTTGAACTTAACCATGCAA+AGG + chr8_3:15446844-15446863 None:intergenic 40.0%
! TTTGTCCGGAAGTATACTTC+TGG - chr8_3:15447113-15447132 Msa1278840:CDS 40.0%
ACTTCCGAACTAACTATAGG+GGG - chr8_3:15447166-15447185 Msa1278840:intron 40.0%
ATGCTATGTCATGGTCACAT+GGG + chr8_3:15447437-15447456 None:intergenic 40.0%
TATGCTATGTCATGGTCACA+TGG + chr8_3:15447438-15447457 None:intergenic 40.0%
CTTCTTTCCCAACGACAAAA+AGG + chr8_3:15447534-15447553 None:intergenic 40.0%
! GAGGCGATCTCAAGATTTTA+TGG - chr8_3:15447555-15447574 Msa1278840:intron 40.0%
ATATGAGGACAATGCCTTTC+TGG + chr8_3:15447593-15447612 None:intergenic 40.0%
!! CTTCTTCTGAGATAGCAAGT+TGG - chr8_3:15447839-15447858 Msa1278840:CDS 40.0%
ACAGACGACGATTCAAAAGA+GGG - chr8_3:15447959-15447978 Msa1278840:exon 40.0%
GTTAGGTCAAAGTCCCAACT+TGG - chr8_3:15443435-15443454 Msa1278840:intron 45.0%
CCACACCATCAATCCAAGTT+GGG + chr8_3:15443451-15443470 None:intergenic 45.0%
TCCACACCATCAATCCAAGT+TGG + chr8_3:15443452-15443471 None:intergenic 45.0%
GTGGAAAACGCCGAATATGT+TGG - chr8_3:15443467-15443486 Msa1278840:intron 45.0%
! TCTTGTGGAAGCATAACAGC+AGG + chr8_3:15444087-15444106 None:intergenic 45.0%
GTTATGCTTCCACAAGATGC+TGG - chr8_3:15444090-15444109 Msa1278840:intron 45.0%
ACATCAACCAATGGACGAAG+TGG + chr8_3:15444317-15444336 None:intergenic 45.0%
! TCGTCCATTGGTTGATGTTG+CGG - chr8_3:15444319-15444338 Msa1278840:intron 45.0%
ACTTCCGCAACATCAACCAA+TGG + chr8_3:15444326-15444345 None:intergenic 45.0%
! GTGCTTCTTATTGGTCTGCT+TGG - chr8_3:15444381-15444400 Msa1278840:intron 45.0%
TTGCTCAATAGCAGCTTCTC+TGG + chr8_3:15444411-15444430 None:intergenic 45.0%
! CGTGCTTGCTTCTTGTTTCT+TGG - chr8_3:15444744-15444763 Msa1278840:CDS 45.0%
! CTGGTTTCTTGAAGTTCTGG+TGG - chr8_3:15444792-15444811 Msa1278840:CDS 45.0%
! GGGTCTACAAACTTGTTTGG+CGG - chr8_3:15444924-15444943 Msa1278840:intron 45.0%
GTTTGGCGGCTCTATTATCA+TGG - chr8_3:15444938-15444957 Msa1278840:intron 45.0%
TATGGAACGGCTCCAAAGAA+CGG + chr8_3:15445093-15445112 None:intergenic 45.0%
! AGTATTTGCAGTGGTTTGGG+CGG - chr8_3:15445143-15445162 Msa1278840:intron 45.0%
! TACTGCCCTAAGGTTGACTT+TGG + chr8_3:15445373-15445392 None:intergenic 45.0%
AATGCAGAGATACTGCCCTA+AGG + chr8_3:15445383-15445402 None:intergenic 45.0%
GGGTGTTCGTTTCTAAATGG+TGG - chr8_3:15445596-15445615 Msa1278840:intron 45.0%
! TCATGAGAGCGTGATGATAG+TGG - chr8_3:15445621-15445640 Msa1278840:intron 45.0%
! GTGTGACATTTTCTCTGCAC+AGG - chr8_3:15445738-15445757 Msa1278840:intron 45.0%
! TTTTCTCTGCACAGGTAGCT+CGG - chr8_3:15445746-15445765 Msa1278840:intron 45.0%
GGTGATAAGAGTGGAGAAGA+CGG - chr8_3:15445769-15445788 Msa1278840:intron 45.0%
! CGTGGTAACTTGAGAAGCAT+GGG + chr8_3:15445799-15445818 None:intergenic 45.0%
ACGTGGTAACTTGAGAAGCA+TGG + chr8_3:15445800-15445819 None:intergenic 45.0%
CCACGTTTGTTTGATCCTTG+GGG - chr8_3:15445814-15445833 Msa1278840:CDS 45.0%
TTCGGGGACATTATCTTACC+GGG - chr8_3:15445856-15445875 Msa1278840:CDS 45.0%
GCAATGACTGCTTATGGTCT+AGG - chr8_3:15446341-15446360 Msa1278840:intron 45.0%
CTATATAGAGCAAAGCTGGC+TGG + chr8_3:15446701-15446720 None:intergenic 45.0%
GGGACTATATAGAGCAAAGC+TGG + chr8_3:15446705-15446724 None:intergenic 45.0%
! TGCGCTCTATTGGTTGTTCA+AGG - chr8_3:15446816-15446835 Msa1278840:CDS 45.0%
! TTGTTCAAGGTGCCTTTGCA+TGG - chr8_3:15446829-15446848 Msa1278840:CDS 45.0%
! TCCGGAAGTATACTTCTGGA+GGG - chr8_3:15447117-15447136 Msa1278840:CDS 45.0%
! CTCTAGCTCATTCAACTCTC+AGG + chr8_3:15447229-15447248 None:intergenic 45.0%
TTGTCGTTGGGAAAGAAGAG+AGG - chr8_3:15447536-15447555 Msa1278840:intron 45.0%
!! CTTCTGAGATAGCAAGTTGG+AGG - chr8_3:15447842-15447861 Msa1278840:CDS 45.0%
AGAAGACTCTCATGGAAGCA+AGG + chr8_3:15447906-15447925 None:intergenic 45.0%
! CTTTTGAATCGTCGTCTGTG+AGG + chr8_3:15447958-15447977 None:intergenic 45.0%
CACAGACGACGATTCAAAAG+AGG - chr8_3:15447958-15447977 Msa1278840:exon 45.0%
TTAGGAGAAGGAAGTGACGG+TGG + chr8_3:15442517-15442536 None:intergenic 50.0%
!!! GGTGTGTCTTTGGTTTTGGC+TGG - chr8_3:15442704-15442723 Msa1278840:three_prime_UTR 50.0%
! TTCTCACAACCAGGCCTTGT+TGG + chr8_3:15442758-15442777 None:intergenic 50.0%
!! CCCAACTTGGATTGATGGTG+TGG - chr8_3:15443448-15443467 Msa1278840:intron 50.0%
AACGCCGAATATGTTGGCGT+CGG - chr8_3:15443473-15443492 Msa1278840:intron 50.0%
! TGCACCGACGCCAACATATT+CGG + chr8_3:15443480-15443499 None:intergenic 50.0%
!! GGCTTGCTACAACAATCAGG+AGG + chr8_3:15443569-15443588 None:intergenic 50.0%
!! GAGATCATTTTGGTGCACCG+AGG - chr8_3:15443753-15443772 Msa1278840:intron 50.0%
GTACTCTCCACTTCGTCCAT+TGG - chr8_3:15444307-15444326 Msa1278840:intron 50.0%
!! GCAGAAAGTGTTGGTTCTCG+TGG - chr8_3:15444682-15444701 Msa1278840:intron 50.0%
!! TGTTGGTTCTCGTGGTTACG+TGG - chr8_3:15444690-15444709 Msa1278840:intron 50.0%
AACGACAAGCATCATACGCG+TGG - chr8_3:15445169-15445188 Msa1278840:intron 50.0%
CAAGCATCATACGCGTGGAT+TGG - chr8_3:15445174-15445193 Msa1278840:intron 50.0%
TTTCTCTGCACAGGTAGCTC+GGG - chr8_3:15445747-15445766 Msa1278840:intron 50.0%
CCCCAAGGATCAAACAAACG+TGG + chr8_3:15445817-15445836 None:intergenic 50.0%
CGTTTGTTTGATCCTTGGGG+TGG - chr8_3:15445817-15445836 Msa1278840:CDS 50.0%
ATGATGCTGTAACCACCCCA+AGG + chr8_3:15445832-15445851 None:intergenic 50.0%
TGGGGTGGTTACAGCATCAT+TGG - chr8_3:15445832-15445851 Msa1278840:CDS 50.0%
ACACGAAATATCCAGCTCGG+AGG + chr8_3:15446319-15446338 None:intergenic 50.0%
TCCGAGCTGGATATTTCGTG+TGG - chr8_3:15446318-15446337 Msa1278840:intron 50.0%
CCCACACGAAATATCCAGCT+CGG + chr8_3:15446322-15446341 None:intergenic 50.0%
CCGAGCTGGATATTTCGTGT+GGG - chr8_3:15446319-15446338 Msa1278840:intron 50.0%
GTGTGGGCAATGACTGCTTA+TGG - chr8_3:15446335-15446354 Msa1278840:intron 50.0%
! GTCCGGAAGTATACTTCTGG+AGG - chr8_3:15447116-15447135 Msa1278840:CDS 50.0%
! GCCCTCCAGAAGTATACTTC+CGG + chr8_3:15447121-15447140 None:intergenic 50.0%
TCCGAACTAACTATAGGGGG+TGG - chr8_3:15447169-15447188 Msa1278840:intron 50.0%
CCCACCCCCTATAGTTAGTT+CGG + chr8_3:15447173-15447192 None:intergenic 50.0%
CCGAACTAACTATAGGGGGT+GGG - chr8_3:15447170-15447189 Msa1278840:intron 50.0%
TCCATGCAGCTGACATCTCT+TGG - chr8_3:15447382-15447401 Msa1278840:intron 50.0%
TCCAAGAGATGTCAGCTGCA+TGG + chr8_3:15447386-15447405 None:intergenic 50.0%
! TGCAGGCACCTTTTTGTCGT+TGG - chr8_3:15447523-15447542 Msa1278840:intron 50.0%
! GCAGGCACCTTTTTGTCGTT+GGG - chr8_3:15447524-15447543 Msa1278840:intron 50.0%
GGACAAGAGGAGAACCAGAA+AGG - chr8_3:15447576-15447595 Msa1278840:intron 50.0%
GATGTTGCTCCAACAAGGCC+TGG - chr8_3:15442746-15442765 Msa1278840:three_prime_UTR 55.0%
!! GTTGGCGTCGGTGCAAGATT+TGG - chr8_3:15443485-15443504 Msa1278840:intron 55.0%
GATGAGGATGGCTGAAGCAC+CGG + chr8_3:15443820-15443839 None:intergenic 55.0%
TTCTCTGCACAGGTAGCTCG+GGG - chr8_3:15445748-15445767 Msa1278840:intron 55.0%
GTAGCTCGGGGTGATAAGAG+TGG - chr8_3:15445760-15445779 Msa1278840:intron 55.0%
GCAAAGAAGAACCTCCGAGC+TGG - chr8_3:15446305-15446324 Msa1278840:intron 55.0%
TGGGAAAGGAGGAGAAGCTC+CGG + chr8_3:15447030-15447049 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 15442420 15448195 15442420 ID=Msa1278840;Name=Msa1278840
chr8_3 mRNA 15442420 15448195 15442420 ID=Msa1278840-mRNA-1;Parent=Msa1278840;Name=Msa1278840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=230|1|1|1|0.84|0.85|14|549|541
chr8_3 exon 15442420 15443087 15442420 ID=Msa1278840-mRNA-1:exon:5977;Parent=Msa1278840-mRNA-1
chr8_3 exon 15443880 15443963 15443880 ID=Msa1278840-mRNA-1:exon:5976;Parent=Msa1278840-mRNA-1
chr8_3 exon 15444253 15444323 15444253 ID=Msa1278840-mRNA-1:exon:5975;Parent=Msa1278840-mRNA-1
chr8_3 exon 15444713 15444855 15444713 ID=Msa1278840-mRNA-1:exon:5974;Parent=Msa1278840-mRNA-1
chr8_3 exon 15444973 15445065 15444973 ID=Msa1278840-mRNA-1:exon:5973;Parent=Msa1278840-mRNA-1
chr8_3 exon 15445254 15445307 15445254 ID=Msa1278840-mRNA-1:exon:5972;Parent=Msa1278840-mRNA-1
chr8_3 exon 15445406 15445568 15445406 ID=Msa1278840-mRNA-1:exon:5971;Parent=Msa1278840-mRNA-1
chr8_3 exon 15445656 15445690 15445656 ID=Msa1278840-mRNA-1:exon:5970;Parent=Msa1278840-mRNA-1
chr8_3 exon 15445775 15445954 15445775 ID=Msa1278840-mRNA-1:exon:5969;Parent=Msa1278840-mRNA-1
chr8_3 exon 15446170 15446321 15446170 ID=Msa1278840-mRNA-1:exon:5968;Parent=Msa1278840-mRNA-1
chr8_3 exon 15446465 15446584 15446465 ID=Msa1278840-mRNA-1:exon:5967;Parent=Msa1278840-mRNA-1
chr8_3 exon 15446760 15446871 15446760 ID=Msa1278840-mRNA-1:exon:5966;Parent=Msa1278840-mRNA-1
chr8_3 exon 15447017 15447175 15447017 ID=Msa1278840-mRNA-1:exon:5965;Parent=Msa1278840-mRNA-1
chr8_3 exon 15447825 15448195 15447825 ID=Msa1278840-mRNA-1:exon:5964;Parent=Msa1278840-mRNA-1
chr8_3 five_prime_UTR 15447966 15448195 15447966 ID=Msa1278840-mRNA-1:five_prime_utr;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15447825 15447965 15447825 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15447017 15447175 15447017 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15446760 15446871 15446760 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15446465 15446584 15446465 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15446170 15446321 15446170 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15445775 15445954 15445775 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15445656 15445690 15445656 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15445406 15445568 15445406 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15445254 15445307 15445254 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15444973 15445065 15444973 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15444713 15444855 15444713 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15444253 15444323 15444253 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15443880 15443963 15443880 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 CDS 15442969 15443087 15442969 ID=Msa1278840-mRNA-1:cds;Parent=Msa1278840-mRNA-1
chr8_3 three_prime_UTR 15442420 15442968 15442420 ID=Msa1278840-mRNA-1:three_prime_utr;Parent=Msa1278840-mRNA-1
Gene Sequence

>Msa1278840

ATGGTTTCATTGGGAGTTATATATAGTAATATTGTAGTTTATGTGTTTCTGTTTGGTGTGTCTTTGGTTTTGGCTGGTGATATAGTTCATCATGATGATGTTGCTCCAACAAGGCCTGGTTGTGAGAATAACTTTGTTCTGGTCAAAGTCCCAACTTGGATTGATGGTGTGGAAAACGCCGAATATGTTGGCGTCGGTGCAAGATTTGGTCCTACATTGGAATCAAAAGAAAAACATGCCAATCATACTAGAGTTGTCATGGCTGATCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACCAATGAGATCATTTTGGTGCACCGAGGAAAATGTAGTTTCACAACCAAGGCAAATATAGCTGATGAAGCCGGTGCTTCAGCCATCCTCATCATAAACTATCGTACAGAACTTTTCAAGATGGTTTGTGAGGAAAATGAAACTGATGTTGACATTGGAATACCTGCTGTTATGCTTCCACAAGATGCTGGATTAAACTTGGAAAGACACATACAAAATAACTCCATAGTATCCATACAGTTGTACTCTCCACTTCGTCCATTGGTTGATGTTGCGGAAGTGTTTTTGTGGCTTATGGCTGTCGGTACCATTTTATGTGCTTCTTATTGGTCTGCTTGGACTGCCAGAGAAGCTGCTATTGAGCAAGAGAAGCTTTTAAAGGATGCTTCAGATGAATATGTTGCAGAAAGTGTTGGTTCTCGTGGTTACGTGGAAATCAGTACTACAGCAGCAATTTTATTTGTCGTGCTTGCTTCTTGTTTCTTGGTTATGCTGTACAAATTAATGTCGTTCTGGTTTCTTGAAGTTCTGGTGGTTCTTTTTTGCATTGGAGGAATAGAGGGTCTACAAACTTGTTTGGCGGCTCTATTATCATGTTTCAGATGGTTTCAATATCCTGCACAAACATATGTCAAGATACCGTTCTTTGGAGCCGTTCCATATCTGACACTTGCTGTTACTCCCTTCTGCATAGTATTTGCAGTGGTTTGGGCGGTTAAACGACAAGCATCATACGCGTGGATTGGTCAAGATATTCTTGGTATTGCGTTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAGGTTGGGACTGTTCTTCTCAGTTGTGCTTTCTTATATGACATCTTATGGGTGTTCGTTTCTAAATGGTGGTTTCATGAGAGCGTGATGATAGTGGTAGCTCGGGGTGATAAGAGTGGAGAAGACGGTATTCCCATGCTTCTCAAGTTACCACGTTTGTTTGATCCTTGGGGTGGTTACAGCATCATTGGTTTCGGGGACATTATCTTACCGGGACTTGTAGTAGCATTTTCACTGAGGTATGATTGGTTGGCAAAGAAGAACCTCCGAGCTGGATATTTCGTGTGGGCAATGACTGCTTATGGTCTAGGTCTCCTCATCACATATGTCGCTTTAAACTTGATGGATGGACATGGCCAGCCAGCTTTGCTCTATATAGTCCCATTTACACTTGGCACCTTTTTGTCGTTGGGAAAGAAGAGAGGCGATCTCAAGATTTTATGGACAAGAGGAGAACCAGAAAGGCATTGTCCTCATATTGAAGAAGTTAACCAATCAATTAACCAACATTGA

Protein sequence

>Msa1278840

MVSLGVIYSNIVVYVFLFGVSLVLAGDIVHHDDVAPTRPGCENNFVLVKVPTWIDGVENAEYVGVGARFGPTLESKEKHANHTRVVMADPPDCCSKPKNKLTNEIILVHRGKCSFTTKANIADEAGASAILIINYRTELFKMVCEENETDVDIGIPAVMLPQDAGLNLERHIQNNSIVSIQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTAREAAIEQEKLLKDASDEYVAESVGSRGYVEISTTAAILFVVLASCFLVMLYKLMSFWFLEVLVVLFCIGGIEGLQTCLAALLSCFRWFQYPAQTYVKIPFFGAVPYLTLAVTPFCIVFAVVWAVKRQASYAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDILWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKLPRLFDPWGGYSIIGFGDIILPGLVVAFSLRYDWLAKKNLRAGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGDLKILWTRGEPERHCPHIEEVNQSINQH*