AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1271300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271300 MtrunA17_Chr8g0335011 87.767 515 46 1 1 515 1 498 0.0 925
Msa1271300 MtrunA17_Chr8g0334971 50.398 502 179 9 19 515 9 445 2.07e-162 468
Msa1271300 MtrunA17_Chr8g0335061 49.603 504 179 11 19 515 9 444 7.86e-159 459
Msa1271300 MtrunA17_Chr8g0334951 46.061 495 182 13 19 508 11 425 3.67e-133 393
Msa1271300 MtrunA17_Chr8g0334911 46.245 506 188 13 12 512 4 430 2.54e-132 390
Msa1271300 MtrunA17_Chr8g0335021 44.828 493 194 13 36 514 27 455 2.65e-127 379
Msa1271300 MtrunA17_Chr8g0335071 42.366 524 225 12 1 513 1 458 3.31e-121 363
Msa1271300 MtrunA17_Chr3g0118601 33.266 496 248 16 17 503 20 441 1.54e-63 214
Msa1271300 MtrunA17_Chr6g0452551 31.352 488 221 17 32 508 21 405 2.41e-61 206
Msa1271300 MtrunA17_Chr6g0452531 30.143 491 227 16 22 497 7 396 2.47e-59 201
Msa1271300 MtrunA17_Chr6g0452611 30.085 472 219 14 36 497 24 394 4.18e-57 195
Msa1271300 MtrunA17_Chr6g0452501 30.737 475 227 14 29 497 18 396 3.50e-56 193
Msa1271300 MtrunA17_Chr6g0452601 29.352 494 237 15 25 503 14 410 2.75e-55 191
Msa1271300 MtrunA17_Chr8g0334981 95.181 83 4 0 433 515 1 83 3.66e-52 171
Msa1271300 MtrunA17_Chr6g0457371 30.323 465 219 14 38 497 27 391 1.28e-51 181
Msa1271300 MtrunA17_Chr6g0452561 29.249 506 239 18 25 508 14 422 7.86e-51 179
Msa1271300 MtrunA17_Chr3g0138001 30.316 475 226 14 34 496 24 405 8.29e-50 179
Msa1271300 MtrunA17_Chr6g0452591 29.218 486 230 16 35 508 54 437 5.17e-48 172
Msa1271300 MtrunA17_Chr6g0452161 29.376 497 231 17 22 496 7 405 1.03e-47 171
Msa1271300 MtrunA17_Chr8g0335001 83.908 87 14 0 1 87 20 106 2.07e-44 152
Msa1271300 MtrunA17_Chr2g0297831 27.349 479 264 14 29 505 61 457 4.41e-43 160
Msa1271300 MtrunA17_Chr2g0300311 27.331 472 261 13 36 505 50 441 3.82e-42 157
Msa1271300 MtrunA17_Chr2g0296801 27.189 434 219 9 73 503 1 340 3.42e-38 143
Msa1271300 MtrunA17_Chr7g0265891 25.813 461 250 15 36 488 51 427 3.75e-35 137
Msa1271300 MtrunA17_Chr5g0439721 25.684 475 272 10 37 508 33 429 5.51e-34 134
Msa1271300 MtrunA17_Chr5g0401791 27.101 476 259 14 32 488 97 503 1.18e-31 128
Msa1271300 MtrunA17_Chr6g0452571 28.642 405 182 14 109 503 33 340 2.90e-31 124
Msa1271300 MtrunA17_Chr5g0439641 25.000 472 277 12 37 500 33 435 9.50e-31 124
Msa1271300 MtrunA17_Chr7g0218171 40.000 135 79 1 371 503 155 289 6.69e-25 104
Msa1271300 MtrunA17_Chr7g0238231 23.819 487 296 14 46 503 39 479 4.94e-23 102
Msa1271300 MtrunA17_Chr6g0452541 30.374 214 120 4 289 496 29 219 4.96e-21 92.4
Msa1271300 MtrunA17_Chr7g0238101 22.093 516 276 16 38 503 29 468 6.75e-21 95.5
Msa1271300 MtrunA17_Chr7g0238211 30.233 172 100 2 318 488 5 157 6.42e-19 84.7
Msa1271300 MtrunA17_Chr5g0439661 30.939 181 103 4 37 213 29 191 5.09e-18 82.4
Msa1271300 MtrunA17_Chr7g0238241 22.567 483 273 16 38 488 28 441 1.89e-17 85.1
Msa1271300 MtrunA17_Chr7g0238091 28.342 187 114 2 318 503 41 208 1.44e-16 79.0
Msa1271300 MtrunA17_Chr7g0238081 30.409 171 99 3 318 487 5 156 2.53e-16 77.0
Msa1271300 MtrunA17_Chr7g0238171 24.655 507 304 17 40 503 37 508 2.58e-16 81.6
Msa1271300 MtrunA17_Chr7g0238131 22.979 470 284 13 58 507 1 412 4.63e-16 80.5
Msa1271300 MtrunA17_Chr4g0002861 31.176 170 104 4 36 205 42 198 4.34e-15 78.2
Msa1271300 MtrunA17_Chr7g0238191 22.979 470 260 14 38 488 27 413 4.51e-15 77.4
Msa1271300 MtrunA17_Chr7g0238051 31.690 142 96 1 363 503 213 354 8.14e-15 76.3
Msa1271300 MtrunA17_Chr5g0440401 24.242 198 126 2 316 512 41 215 1.32e-14 73.2
Msa1271300 MtrunA17_Chr5g0439681 27.568 185 108 4 318 500 136 296 2.05e-14 74.3
Msa1271300 MtrunA17_Chr7g0238511 30.667 150 93 3 367 515 288 427 2.63e-14 75.1
Msa1271300 MtrunA17_Chr7g0238111 33.099 142 91 3 367 505 292 432 3.63e-14 74.7
Msa1271300 MtrunA17_Chr7g0232521 32.520 123 82 1 367 488 72 194 4.79e-14 71.2
Msa1271300 MtrunA17_Chr4g0002911 31.953 169 101 4 37 205 43 197 5.10e-14 74.7
Msa1271300 MtrunA17_Chr7g0242091 32.386 176 107 6 36 210 54 218 6.41e-14 74.3
Msa1271300 MtrunA17_Chr4g0002901 27.895 190 124 4 36 225 42 218 7.14e-14 74.3
Msa1271300 MtrunA17_Chr4g0002901 28.358 134 95 1 373 505 411 544 3.35e-11 65.9
Msa1271300 MtrunA17_Chr2g0297821 26.984 189 118 4 319 505 4 174 9.72e-14 69.7
Msa1271300 MtrunA17_Chr7g0238181 32.639 144 84 4 367 509 215 346 4.62e-13 70.5
Msa1271300 MtrunA17_Chr8g0354591 31.126 151 90 2 367 503 299 449 7.49e-13 70.5
Msa1271300 MtrunA17_Chr7g0220521 28.788 198 126 6 4 200 9 192 2.11e-12 69.3
Msa1271300 MtrunA17_Chr7g0220521 29.323 133 92 2 371 502 399 530 9.77e-11 64.3
Msa1271300 MtrunA17_Chr7g0242011 27.232 224 138 9 3 218 27 233 3.88e-12 68.6
Msa1271300 MtrunA17_Chr3g0107251 27.320 194 122 6 37 230 31 205 1.76e-11 66.2
Msa1271300 MtrunA17_Chr7g0238141 24.034 466 249 18 46 488 38 421 2.34e-11 65.9
Msa1271300 MtrunA17_Chr7g0241951 27.273 176 114 3 37 209 29 193 5.87e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271300 AT2G44930.1 29.960 494 240 9 36 508 84 492 4.44e-55 193
Msa1271300 AT3G60470.1 29.685 539 270 15 38 508 34 531 2.76e-54 191
Msa1271300 AT2G28580.6 28.921 491 244 10 36 508 41 444 6.66e-52 183
Msa1271300 AT2G28580.1 28.921 491 244 10 36 508 109 512 1.78e-51 184
Msa1271300 AT2G28580.2 28.921 491 244 10 36 508 123 526 2.08e-51 184
Msa1271300 AT2G28580.5 29.167 480 240 9 36 508 109 495 5.14e-51 182
Msa1271300 AT2G28580.4 29.167 480 240 9 36 508 123 509 5.86e-51 182
Msa1271300 AT4G31980.1 27.660 470 231 12 36 496 293 662 2.97e-46 172
Msa1271300 AT5G11290.2 25.519 482 265 15 24 503 22 411 1.09e-39 149
Msa1271300 AT1G67150.4 27.178 482 246 12 35 503 5 394 7.20e-39 146
Msa1271300 AT1G67150.1 27.178 482 246 12 35 503 5 394 7.20e-39 146
Msa1271300 AT1G67150.2 26.955 486 246 12 35 503 5 398 3.09e-38 145
Msa1271300 AT2G36430.1 24.835 455 260 11 36 488 45 419 6.78e-38 145
Msa1271300 AT3G50150.1 27.331 472 271 11 38 505 92 495 7.10e-38 145
Msa1271300 AT3G50170.1 26.850 473 275 12 38 503 115 523 8.39e-37 143
Msa1271300 AT3G47250.3 26.176 489 273 13 27 503 52 464 2.32e-36 141
Msa1271300 AT3G47250.2 26.176 489 273 13 27 503 52 464 2.32e-36 141
Msa1271300 AT3G47250.1 26.176 489 273 13 27 503 52 464 2.32e-36 141
Msa1271300 AT3G47210.1 28.166 458 220 12 25 467 82 445 3.43e-35 137
Msa1271300 AT3G50140.1 26.069 491 260 14 38 505 115 525 2.08e-33 133
Msa1271300 AT2G28580.3 27.488 422 197 11 36 437 123 455 5.78e-33 131
Msa1271300 AT3G50120.1 26.383 470 283 12 38 503 105 515 1.49e-32 131
Msa1271300 AT3G50130.1 26.211 454 271 12 38 488 141 533 1.64e-30 125
Msa1271300 AT3G50180.1 25.462 487 260 16 32 503 174 572 3.73e-28 118
Msa1271300 AT3G47200.1 25.261 479 262 13 25 488 35 432 4.73e-27 114
Msa1271300 AT3G47200.2 25.261 479 262 13 25 488 35 432 4.73e-27 114
Msa1271300 AT5G22540.1 23.226 465 257 13 36 488 31 407 6.15e-26 110
Msa1271300 AT3G44710.1 24.280 486 306 14 36 503 47 488 6.76e-25 108
Msa1271300 AT3G50190.1 23.789 475 258 13 38 503 98 477 2.05e-22 100
Msa1271300 AT5G11290.1 23.095 433 240 14 73 503 1 342 2.87e-22 98.6
Msa1271300 AT1G65985.1 34.054 185 79 4 38 204 16 175 4.11e-20 93.6
Msa1271300 AT1G65985.1 37.903 124 76 1 368 490 304 427 2.98e-16 81.6
Msa1271300 AT1G65985.2 34.054 185 79 4 38 204 16 175 4.11e-20 93.6
Msa1271300 AT1G65985.2 37.903 124 76 1 368 490 304 427 2.98e-16 81.6
Msa1271300 AT3G50170.2 29.577 213 120 5 3 205 70 262 2.09e-19 90.9
Msa1271300 AT5G22550.2 31.884 207 117 8 4 206 11 197 2.81e-19 91.3
Msa1271300 AT3G50160.1 31.285 179 103 4 32 210 100 258 1.90e-18 88.6
Msa1271300 AT3G50160.1 27.679 224 133 3 286 503 285 485 1.67e-16 82.8
Msa1271300 AT1G67150.3 29.947 187 107 3 318 503 188 351 3.36e-18 86.7
Msa1271300 AT1G67150.3 31.694 183 94 5 35 207 5 166 3.52e-15 77.8
Msa1271300 AT3G50150.2 31.429 175 99 4 38 210 92 247 8.50e-17 83.2
Msa1271300 AT3G50140.2 31.548 168 95 4 38 205 115 262 6.01e-16 80.5
Msa1271300 AT5G22560.1 26.882 186 103 4 36 207 47 213 3.43e-15 78.6
Msa1271300 AT3G50190.4 27.717 184 110 5 38 221 98 258 5.45e-13 70.9
Msa1271300 AT3G50190.3 27.717 184 110 5 38 221 98 258 5.45e-13 70.9
Msa1271300 AT3G50190.2 27.717 184 110 5 38 221 98 258 6.16e-13 70.5
Msa1271300 AT3G02645.1 31.356 118 80 1 373 489 380 497 3.45e-12 69.3
Msa1271300 AT3G44700.1 26.389 144 99 4 5 143 16 157 8.08e-11 62.4

Find 56 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATTATCAGAATATT+TGG 0.154201 8_3:+4808713 Msa1271300:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8_3:-4808492 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.162375 8_3:-4808268 None:intergenic
CTGCTAAACTTAACTCTTCT+AGG 0.268196 8_3:-4807400 None:intergenic
ACGTGAAACTAAGCTTGTTT+TGG 0.326591 8_3:+4808033 Msa1271300:CDS
GACATTGTTCTAGGGCAATA+AGG 0.326811 8_3:-4808483 None:intergenic
GAAACATAATTGCATATATA+AGG 0.329067 8_3:-4808520 None:intergenic
GACTTTGTAGTTCTTGATCA+TGG 0.348123 8_3:-4807603 None:intergenic
ACCATTTCAAAGCGCGTCTT+AGG 0.348316 8_3:+4808413 Msa1271300:CDS
TCTTTATTTCCAAGGTGAAT+TGG 0.350401 8_3:-4807503 None:intergenic
ATCAAATCAGTGAAATGTTT+AGG 0.353279 8_3:-4808181 None:intergenic
TTACCTTCCAGCTGATTTAA+CGG 0.361070 8_3:+4808213 Msa1271300:CDS
GAAGTGCCAGTGCTTGTTAA+TGG 0.368562 8_3:+4808631 Msa1271300:CDS
AACATTTCACTGATTTGATA+AGG 0.390830 8_3:+4808185 Msa1271300:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8_3:+4807479 Msa1271300:CDS
GTAACAAAGTTAATAGATTC+TGG 0.396787 8_3:+4808277 Msa1271300:CDS
AAGAAACCGTTCATGGAAAT+CGG 0.400354 8_3:+4807748 Msa1271300:CDS
ATAGACGCTCATAGAAGAAA+TGG 0.406927 8_3:-4807562 None:intergenic
TCCTAAGACGCGCTTTGAAA+TGG 0.424576 8_3:-4808414 None:intergenic
TCTAAATCCGTTAAATCAGC+TGG 0.442093 8_3:-4808220 None:intergenic
AGCAATAACCATAGGTTTCA+AGG 0.443493 8_3:+4808157 Msa1271300:CDS
CAGAGAAAATAACTCAGAAA+TGG 0.447228 8_3:-4808358 None:intergenic
ATCTGAAACTGAATATGAAA+TGG 0.454211 8_3:+4807352 Msa1271300:CDS
GTTTAGGACCTTGAAACCTA+TGG 0.455366 8_3:-4808165 None:intergenic
ACAAGTTGATGTTGATTTGT+TGG 0.455972 8_3:+4808567 Msa1271300:CDS
AGAGCTAGTTCTACTTTGGT+TGG 0.457619 8_3:+4808784 Msa1271300:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8_3:+4808597 Msa1271300:CDS
GGACCAATTGAGATTAATTG+AGG 0.464532 8_3:-4807482 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8_3:+4808780 Msa1271300:CDS
AGTGGCTTAATTGGTGATGT+TGG 0.493716 8_3:+4808088 Msa1271300:CDS
GTTGAAGTTCTTTATTTCCA+AGG 0.495312 8_3:-4807511 None:intergenic
TCTTAGGATTCCGCAATTGA+AGG 0.495495 8_3:+4808429 Msa1271300:CDS
ATTACATTCTAACACAAGCT+TGG 0.511928 8_3:+4807834 Msa1271300:CDS
CAAAGACCATTAACAAGCAC+TGG 0.512749 8_3:-4808637 None:intergenic
TGTTGATTTGTTGGTGGAGA+AGG 0.512953 8_3:+4808576 Msa1271300:CDS
TTGATACTGACATTGTTCTA+GGG 0.522905 8_3:-4808491 None:intergenic
ATGTTTCAATCTAAATGACT+TGG 0.523292 8_3:-4807804 None:intergenic
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8_3:+4808598 Msa1271300:CDS
AGCAGACTGTAGCATCTACA+AGG 0.532357 8_3:+4807418 Msa1271300:CDS
TTAACGGATTTAGAAAAGAG+TGG 0.543465 8_3:+4808229 Msa1271300:CDS
CACCAACCACAATGCAGCCA+TGG 0.546124 8_3:-4808743 None:intergenic
TGGTTCAAACATGAAAATGA+AGG 0.548134 8_3:-4808394 None:intergenic
TCAATTGGTCCAATTCACCT+TGG 0.558480 8_3:+4807494 Msa1271300:CDS
TTAATTGGTGATGTTGGTAG+TGG 0.564871 8_3:+4808094 Msa1271300:CDS
ACCACAATGCAGCCATGGTA+CGG 0.571593 8_3:-4808738 None:intergenic
AGTTGATGTTGATTTGTTGG+TGG 0.572996 8_3:+4808570 Msa1271300:CDS
ATGTATCCGATTTCCATGAA+CGG 0.580945 8_3:-4807754 None:intergenic
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8_3:+4808651 Msa1271300:CDS
AATCTATGAGCAATAACCAT+AGG 0.583238 8_3:+4808149 Msa1271300:CDS
GGCTCAGCAAAAGCATCACA+AGG 0.605591 8_3:+4807855 Msa1271300:CDS
TACCATGGCTGCATTGTGGT+TGG 0.611964 8_3:+4808741 Msa1271300:CDS
AATCCGTTAAATCAGCTGGA+AGG 0.622325 8_3:-4808216 None:intergenic
GAATATTTGGAACCGTACCA+TGG 0.643141 8_3:+4808726 Msa1271300:CDS
GTGTGATCAACCTTCAATTG+CGG 0.689659 8_3:-4808439 None:intergenic
GCTCAGCAAAAGCATCACAA+GGG 0.717992 8_3:+4807856 Msa1271300:CDS
ACCGTACCATGGCTGCATTG+TGG 0.722473 8_3:+4808737 Msa1271300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTCTTTGCTTATGTT+GGG - chr8_3:4807680-4807699 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - chr8_3:4807681-4807700 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + chr8_3:4808070-4808089 Msa1271300:CDS 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8_3:4808131-4808150 None:intergenic 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8_3:4808523-4808542 None:intergenic 20.0%
!! ATAAGCATTATCAGAATATT+TGG + chr8_3:4808713-4808732 Msa1271300:CDS 20.0%
!!! AATTTTTCTTTGCTTATGTT+GGG - chr8_3:4807680-4807699 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - chr8_3:4807681-4807700 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + chr8_3:4808070-4808089 Msa1271300:CDS 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8_3:4808131-4808150 None:intergenic 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8_3:4808523-4808542 None:intergenic 20.0%
!! ATAAGCATTATCAGAATATT+TGG + chr8_3:4808713-4808732 Msa1271300:CDS 20.0%
!! ATCTGAAACTGAATATGAAA+TGG + chr8_3:4807352-4807371 Msa1271300:CDS 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + chr8_3:4807682-4807701 Msa1271300:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + chr8_3:4807697-4807716 Msa1271300:CDS 25.0%
! ATGTTTCAATCTAAATGACT+TGG - chr8_3:4807807-4807826 None:intergenic 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - chr8_3:4807970-4807989 None:intergenic 25.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8_3:4808184-4808203 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8_3:4808185-4808204 Msa1271300:CDS 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8_3:4808271-4808290 None:intergenic 25.0%
! GTAACAAAGTTAATAGATTC+TGG + chr8_3:4808277-4808296 Msa1271300:CDS 25.0%
!! ATCTGAAACTGAATATGAAA+TGG + chr8_3:4807352-4807371 Msa1271300:CDS 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + chr8_3:4807682-4807701 Msa1271300:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + chr8_3:4807697-4807716 Msa1271300:CDS 25.0%
! ATGTTTCAATCTAAATGACT+TGG - chr8_3:4807807-4807826 None:intergenic 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - chr8_3:4807970-4807989 None:intergenic 25.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8_3:4808184-4808203 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8_3:4808185-4808204 Msa1271300:CDS 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8_3:4808271-4808290 None:intergenic 25.0%
! GTAACAAAGTTAATAGATTC+TGG + chr8_3:4808277-4808296 Msa1271300:CDS 25.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8_3:4807457-4807476 None:intergenic 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8_3:4807479-4807498 Msa1271300:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - chr8_3:4807506-4807525 None:intergenic 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - chr8_3:4807514-4807533 None:intergenic 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - chr8_3:4807536-4807555 None:intergenic 30.0%
CAATGCAACAACACAAAAAA+AGG + chr8_3:4807534-4807553 Msa1271300:CDS 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + chr8_3:4807741-4807760 Msa1271300:CDS 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8_3:4807834-4807853 Msa1271300:CDS 30.0%
AGATTCATCAGCACAAAAAA+AGG - chr8_3:4807908-4807927 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + chr8_3:4808079-4808098 Msa1271300:CDS 30.0%
AATCTATGAGCAATAACCAT+AGG + chr8_3:4808149-4808168 Msa1271300:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + chr8_3:4808229-4808248 Msa1271300:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - chr8_3:4808361-4808380 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8_3:4808397-4808416 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + chr8_3:4808458-4808477 Msa1271300:CDS 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8_3:4808494-4808513 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8_3:4808567-4808586 Msa1271300:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8_3:4807457-4807476 None:intergenic 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8_3:4807479-4807498 Msa1271300:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - chr8_3:4807506-4807525 None:intergenic 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - chr8_3:4807514-4807533 None:intergenic 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - chr8_3:4807536-4807555 None:intergenic 30.0%
CAATGCAACAACACAAAAAA+AGG + chr8_3:4807534-4807553 Msa1271300:CDS 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + chr8_3:4807741-4807760 Msa1271300:CDS 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8_3:4807834-4807853 Msa1271300:CDS 30.0%
AGATTCATCAGCACAAAAAA+AGG - chr8_3:4807908-4807927 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + chr8_3:4808079-4808098 Msa1271300:CDS 30.0%
AATCTATGAGCAATAACCAT+AGG + chr8_3:4808149-4808168 Msa1271300:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + chr8_3:4808229-4808248 Msa1271300:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - chr8_3:4808361-4808380 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8_3:4808397-4808416 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + chr8_3:4808458-4808477 Msa1271300:CDS 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8_3:4808494-4808513 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8_3:4808567-4808586 Msa1271300:CDS 30.0%
CTGCTAAACTTAACTCTTCT+AGG - chr8_3:4807403-4807422 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8_3:4807485-4807504 None:intergenic 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8_3:4807565-4807584 None:intergenic 35.0%
GACTTTGTAGTTCTTGATCA+TGG - chr8_3:4807606-4807625 None:intergenic 35.0%
AAGAAACCGTTCATGGAAAT+CGG + chr8_3:4807748-4807767 Msa1271300:CDS 35.0%
ATGTATCCGATTTCCATGAA+CGG - chr8_3:4807757-4807776 None:intergenic 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - chr8_3:4807946-4807965 None:intergenic 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - chr8_3:4807947-4807966 None:intergenic 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + chr8_3:4808033-4808052 Msa1271300:CDS 35.0%
!! TTAATTGGTGATGTTGGTAG+TGG + chr8_3:4808094-4808113 Msa1271300:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + chr8_3:4808157-4808176 Msa1271300:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + chr8_3:4808213-4808232 Msa1271300:CDS 35.0%
TCTAAATCCGTTAAATCAGC+TGG - chr8_3:4808223-4808242 None:intergenic 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + chr8_3:4808300-4808319 Msa1271300:CDS 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + chr8_3:4808301-4808320 Msa1271300:CDS 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + chr8_3:4808302-4808321 Msa1271300:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + chr8_3:4808364-4808383 Msa1271300:CDS 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8_3:4808495-4808514 None:intergenic 35.0%
!! AGTTGATGTTGATTTGTTGG+TGG + chr8_3:4808570-4808589 Msa1271300:CDS 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8_3:4808598-4808617 Msa1271300:CDS 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8_3:4808651-4808670 Msa1271300:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8_3:4808761-4808780 Msa1271300:CDS 35.0%
CTGCTAAACTTAACTCTTCT+AGG - chr8_3:4807403-4807422 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8_3:4807485-4807504 None:intergenic 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8_3:4807565-4807584 None:intergenic 35.0%
GACTTTGTAGTTCTTGATCA+TGG - chr8_3:4807606-4807625 None:intergenic 35.0%
AAGAAACCGTTCATGGAAAT+CGG + chr8_3:4807748-4807767 Msa1271300:CDS 35.0%
ATGTATCCGATTTCCATGAA+CGG - chr8_3:4807757-4807776 None:intergenic 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - chr8_3:4807946-4807965 None:intergenic 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - chr8_3:4807947-4807966 None:intergenic 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + chr8_3:4808033-4808052 Msa1271300:CDS 35.0%
!! TTAATTGGTGATGTTGGTAG+TGG + chr8_3:4808094-4808113 Msa1271300:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + chr8_3:4808157-4808176 Msa1271300:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + chr8_3:4808213-4808232 Msa1271300:CDS 35.0%
TCTAAATCCGTTAAATCAGC+TGG - chr8_3:4808223-4808242 None:intergenic 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + chr8_3:4808300-4808319 Msa1271300:CDS 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + chr8_3:4808301-4808320 Msa1271300:CDS 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + chr8_3:4808302-4808321 Msa1271300:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + chr8_3:4808364-4808383 Msa1271300:CDS 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8_3:4808495-4808514 None:intergenic 35.0%
!! AGTTGATGTTGATTTGTTGG+TGG + chr8_3:4808570-4808589 Msa1271300:CDS 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8_3:4808598-4808617 Msa1271300:CDS 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8_3:4808651-4808670 Msa1271300:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8_3:4808761-4808780 Msa1271300:CDS 35.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8_3:4807446-4807465 None:intergenic 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8_3:4807494-4807513 Msa1271300:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + chr8_3:4807715-4807734 Msa1271300:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + chr8_3:4807871-4807890 Msa1271300:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + chr8_3:4808088-4808107 Msa1271300:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - chr8_3:4808168-4808187 None:intergenic 40.0%
AATCCGTTAAATCAGCTGGA+AGG - chr8_3:4808219-4808238 None:intergenic 40.0%
TCTTAGGATTCCGCAATTGA+AGG + chr8_3:4808429-4808448 Msa1271300:CDS 40.0%
GTGTGATCAACCTTCAATTG+CGG - chr8_3:4808442-4808461 None:intergenic 40.0%
!! GACATTGTTCTAGGGCAATA+AGG - chr8_3:4808486-4808505 None:intergenic 40.0%
!! TGTTGATTTGTTGGTGGAGA+AGG + chr8_3:4808576-4808595 Msa1271300:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8_3:4808597-4808616 Msa1271300:CDS 40.0%
CAAAGACCATTAACAAGCAC+TGG - chr8_3:4808640-4808659 None:intergenic 40.0%
! GAATATTTGGAACCGTACCA+TGG + chr8_3:4808726-4808745 Msa1271300:CDS 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8_3:4808780-4808799 Msa1271300:CDS 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8_3:4808784-4808803 Msa1271300:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8_3:4807446-4807465 None:intergenic 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8_3:4807494-4807513 Msa1271300:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + chr8_3:4807715-4807734 Msa1271300:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + chr8_3:4807871-4807890 Msa1271300:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + chr8_3:4808088-4808107 Msa1271300:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - chr8_3:4808168-4808187 None:intergenic 40.0%
AATCCGTTAAATCAGCTGGA+AGG - chr8_3:4808219-4808238 None:intergenic 40.0%
TCTTAGGATTCCGCAATTGA+AGG + chr8_3:4808429-4808448 Msa1271300:CDS 40.0%
GTGTGATCAACCTTCAATTG+CGG - chr8_3:4808442-4808461 None:intergenic 40.0%
!! GACATTGTTCTAGGGCAATA+AGG - chr8_3:4808486-4808505 None:intergenic 40.0%
!! TGTTGATTTGTTGGTGGAGA+AGG + chr8_3:4808576-4808595 Msa1271300:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8_3:4808597-4808616 Msa1271300:CDS 40.0%
CAAAGACCATTAACAAGCAC+TGG - chr8_3:4808640-4808659 None:intergenic 40.0%
! GAATATTTGGAACCGTACCA+TGG + chr8_3:4808726-4808745 Msa1271300:CDS 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8_3:4808780-4808799 Msa1271300:CDS 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8_3:4808784-4808803 Msa1271300:CDS 40.0%
AGCAGACTGTAGCATCTACA+AGG + chr8_3:4807418-4807437 Msa1271300:CDS 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG + chr8_3:4807856-4807875 Msa1271300:CDS 45.0%
ACCATTTCAAAGCGCGTCTT+AGG + chr8_3:4808413-4808432 Msa1271300:CDS 45.0%
!! TCCTAAGACGCGCTTTGAAA+TGG - chr8_3:4808417-4808436 None:intergenic 45.0%
! GAAGTGCCAGTGCTTGTTAA+TGG + chr8_3:4808631-4808650 Msa1271300:CDS 45.0%
AGCAGACTGTAGCATCTACA+AGG + chr8_3:4807418-4807437 Msa1271300:CDS 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG + chr8_3:4807856-4807875 Msa1271300:CDS 45.0%
ACCATTTCAAAGCGCGTCTT+AGG + chr8_3:4808413-4808432 Msa1271300:CDS 45.0%
!! TCCTAAGACGCGCTTTGAAA+TGG - chr8_3:4808417-4808436 None:intergenic 45.0%
! GAAGTGCCAGTGCTTGTTAA+TGG + chr8_3:4808631-4808650 Msa1271300:CDS 45.0%
!! GGCTCAGCAAAAGCATCACA+AGG + chr8_3:4807855-4807874 Msa1271300:CDS 50.0%
ACCACAATGCAGCCATGGTA+CGG - chr8_3:4808741-4808760 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + chr8_3:4808741-4808760 Msa1271300:CDS 50.0%
!! GGCTCAGCAAAAGCATCACA+AGG + chr8_3:4807855-4807874 Msa1271300:CDS 50.0%
ACCACAATGCAGCCATGGTA+CGG - chr8_3:4808741-4808760 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + chr8_3:4808741-4808760 Msa1271300:CDS 50.0%
ACCGTACCATGGCTGCATTG+TGG + chr8_3:4808737-4808756 Msa1271300:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - chr8_3:4808746-4808765 None:intergenic 55.0%
ACCGTACCATGGCTGCATTG+TGG + chr8_3:4808737-4808756 Msa1271300:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - chr8_3:4808746-4808765 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 4807320 4808867 4807320 ID=Msa1271300;Name=Msa1271300
chr8_3 mRNA 4807320 4808867 4807320 ID=Msa1271300-mRNA-1;Parent=Msa1271300;Name=Msa1271300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|515
chr8_3 exon 4807320 4808867 4807320 ID=Msa1271300-mRNA-1:exon:1641;Parent=Msa1271300-mRNA-1
chr8_3 CDS 4807320 4808867 4807320 ID=Msa1271300-mRNA-1:cds;Parent=Msa1271300-mRNA-1
Gene Sequence

>Msa1271300

ATGGAACATGCTAATACTTCTGTTGATGCTTTATCTGAAACTGAATATGAAATGGTGAAACACATCATTGACGTTGAAGTCCTAGAAGAGTTAAGTTTAGCAGACTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAATAAAGAACTTCAACCAATGCAACAACACAAAAAAAGGTATTTCCATTTCTTCTATGAGCGTCTATCTCAATTCAATCAACAATCCATGATCAAGAACTACAAAGTCTATCTTGAAAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGAAATTTCCCAACATAAGCAAAGAAAAATTTGTGGAAACAATTTTGTTGGATGCTGTTTTCATCATGGAGCTTTTGTTAAGAAACCGTTCATGGAAATCGGATACATCAAAACATGAACATGAATACAAGCAATCCAAGTCATTTAGATTGAAACATAGTGATGATTACATTCTAACACAAGCTTGGCTCAGCAAAAGCATCACAAGGGACTTGATTTTGTTGGAAAATCAGATACCTTTTTTTGTGCTGATGAATCTTTACGATACTGTCGTCCCTAACGACGACAAAAAAGAAGACCATAAAAGTTTTCTTGATCTTGCACTTGAGTATTTTGCATTCTACGACACACAGAAATCGTCATCACGTGAAACTAAGCTTGTTTTGGATAAGAATCAGACAAAGAAATATTATTTTGTGAGTGGCTTAATTGGTGATGTTGGTAGTGGTAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAATAACCATAGGTTTCAAGGTCCTAAACATTTCACTGATTTGATAAGGTTTTTTTACCTTCCAGCTGATTTAACGGATTTAGAAAAGAGTGGTTGTTCTCATACTTTTCCAAGAACAGTAACAAAGTTAATAGATTCTGGTGTGAGTTTTGAGAAAGTTGTGGGGAGAAGATTGCTAGAAATAACATTTGAGAAGAAACCATTTCTGAGTTATTTTCTCTGCTTAGGTTGTTTACCTTCATTTTCATGTTTGAACCATTTCAAAGCGCGTCTTAGGATTCCGCAATTGAAGGTTGATCACACAACAGAATGTGTTTTAAGGAACCTTATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATACATACACAAGTTGATGTTGATTTGTTGGTGGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGCCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACTATGATATTATTAATGAGCTTAATAAGCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGAATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCTAGAATTCTCTTCTAA

Protein sequence

>Msa1271300

MEHANTSVDALSETEYEMVKHIIDVEVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGNKELQPMQQHKKRYFHFFYERLSQFNQQSMIKNYKVYLENKEQEIRKCYAEKFPNISKEKFVETILLDAVFIMELLLRNRSWKSDTSKHEHEYKQSKSFRLKHSDDYILTQAWLSKSITRDLILLENQIPFFVLMNLYDTVVPNDDKKEDHKSFLDLALEYFAFYDTQKSSSRETKLVLDKNQTKKYYFVSGLIGDVGSGNSVSKKKHSDKSMSNNHRFQGPKHFTDLIRFFYLPADLTDLEKSGCSHTFPRTVTKLIDSGVSFEKVVGRRLLEITFEKKPFLSYFLCLGCLPSFSCLNHFKARLRIPQLKVDHTTECVLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVPVLVNGLCKHVVVNSTCYYDIINELNKHYQNIWNRTMAALWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLARILF*