AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1328930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328930 MtrunA17_Chr4g0053281 98.817 338 3 1 1 337 1 338 0.0 681
Msa1328930 MtrunA17_Chr5g0401821 57.817 339 73 9 1 337 1 271 1.53e-113 330
Msa1328930 MtrunA17_Chr1g0147881 40.204 393 126 15 1 337 1 340 9.44e-70 221
Msa1328930 MtrunA17_Chr4g0071521 44.892 323 145 11 20 333 15 313 2.02e-67 214
Msa1328930 MtrunA17_Chr1g0184691 52.198 182 65 4 151 323 183 351 5.18e-48 165
Msa1328930 MtrunA17_Chr3g0139021 55.639 133 57 1 199 331 250 380 5.49e-43 153
Msa1328930 MtrunA17_Chr7g0228941 62.921 89 32 1 246 334 33 120 4.55e-34 121
Msa1328930 MtrunA17_Chr2g0284321 55.172 87 37 2 239 324 9 94 3.89e-27 106
Msa1328930 MtrunA17_Chr7g0270051 55.814 86 34 1 241 322 25 110 8.09e-27 106
Msa1328930 MtrunA17_Chr2g0319961 58.242 91 31 3 240 324 50 139 9.92e-27 106
Msa1328930 MtrunA17_Chr7g0248691 60.976 82 27 2 241 322 135 211 4.32e-26 106
Msa1328930 MtrunA17_Chr2g0293481 56.250 96 36 3 232 322 230 324 9.26e-26 107
Msa1328930 MtrunA17_Chr8g0379461 53.846 91 35 3 241 324 45 135 1.09e-25 103
Msa1328930 MtrunA17_Chr8g0348311 58.537 82 29 1 241 322 136 212 1.14e-24 102
Msa1328930 MtrunA17_Chr2g0289181 57.576 66 28 0 258 323 7 72 3.29e-23 96.3
Msa1328930 MtrunA17_Chr1g0202461 52.941 85 35 1 239 323 240 319 3.50e-23 99.0
Msa1328930 MtrunA17_Chr5g0445311 45.545 101 43 2 241 330 329 428 1.31e-22 98.6
Msa1328930 MtrunA17_Chr7g0218081 35.795 176 90 5 174 327 297 471 3.47e-22 97.1
Msa1328930 MtrunA17_Chr7g0218081 54.839 62 25 3 262 322 224 283 1.68e-14 74.3
Msa1328930 MtrunA17_Chr3g0079691 36.628 172 90 5 180 333 392 562 8.30e-22 96.7
Msa1328930 MtrunA17_Chr3g0079691 50.877 57 26 2 266 322 281 335 2.63e-12 67.8
Msa1328930 MtrunA17_Chr3g0101131 49.474 95 39 2 241 327 383 476 9.40e-22 96.3
Msa1328930 MtrunA17_Chr5g0432161 51.765 85 37 2 249 330 402 485 2.41e-21 94.7
Msa1328930 MtrunA17_Chr5g0432161 50.877 57 26 2 266 322 245 299 8.37e-13 69.3
Msa1328930 MtrunA17_Chr4g0004911 50.633 79 35 2 249 324 317 394 2.95e-21 94.4
Msa1328930 MtrunA17_Chr4g0004911 52.632 57 26 1 266 322 185 240 2.30e-14 73.9
Msa1328930 MtrunA17_Chr7g0249311 51.136 88 39 2 249 333 373 459 3.11e-21 94.7
Msa1328930 MtrunA17_Chr7g0249311 50.000 58 27 2 266 323 180 235 7.29e-12 66.2
Msa1328930 MtrunA17_Chr7g0243891 44.554 101 52 2 230 330 342 438 3.22e-21 94.4
Msa1328930 MtrunA17_Chr7g0243891 52.632 57 25 2 266 322 217 271 1.18e-12 68.6
Msa1328930 MtrunA17_Chr3g0106491 40.517 116 53 3 230 330 315 429 3.48e-21 94.4
Msa1328930 MtrunA17_Chr3g0106491 50.000 66 31 2 266 331 199 262 4.04e-14 73.2
Msa1328930 MtrunA17_Chr7g0249301 47.423 97 43 3 238 327 258 353 5.21e-21 92.8
Msa1328930 MtrunA17_Chr7g0249301 51.724 58 26 2 266 323 63 118 2.55e-12 67.4
Msa1328930 MtrunA17_Chr7g0263531 48.000 75 38 1 261 335 357 430 1.63e-20 92.0
Msa1328930 MtrunA17_Chr7g0263531 55.556 63 25 3 261 322 184 244 3.67e-15 75.9
Msa1328930 MtrunA17_Chr5g0418191 51.220 82 36 2 249 327 301 381 2.60e-20 91.3
Msa1328930 MtrunA17_Chr5g0418191 53.846 65 27 3 261 324 146 208 2.66e-14 73.6
Msa1328930 MtrunA17_Chr4g0051181 32.778 180 91 3 175 324 123 302 4.11e-20 90.9
Msa1328930 MtrunA17_Chr4g0001361 45.455 88 45 1 238 322 132 219 8.37e-20 88.6
Msa1328930 MtrunA17_Chr3g0136961 56.897 58 25 0 266 323 139 196 8.58e-20 88.2
Msa1328930 MtrunA17_Chr4g0074001 59.649 57 22 1 266 322 360 415 1.73e-19 89.4
Msa1328930 MtrunA17_Chr4g0042831 50.000 82 37 2 249 327 259 339 2.06e-19 88.2
Msa1328930 MtrunA17_Chr1g0150801 50.704 71 34 1 252 322 89 158 3.17e-19 83.6
Msa1328930 MtrunA17_Chr8g0387501 61.404 57 22 0 266 322 130 186 3.79e-19 85.9
Msa1328930 MtrunA17_Chr3g0099641 50.685 73 36 0 252 324 238 310 3.83e-19 88.2
Msa1328930 MtrunA17_Chr2g0288871 50.000 76 38 0 249 324 289 364 4.21e-19 88.2
Msa1328930 MtrunA17_Chr7g0270191 50.000 74 36 1 249 322 129 201 4.29e-19 86.3
Msa1328930 MtrunA17_Chr8g0335811 44.578 83 42 2 244 323 130 211 4.88e-19 84.7
Msa1328930 MtrunA17_Chr4g0060271 57.627 59 25 0 266 324 256 314 1.80e-18 86.3
Msa1328930 MtrunA17_Chr7g0270831 54.839 62 28 0 266 327 217 278 2.12e-18 85.5
Msa1328930 MtrunA17_Chr2g0322391 47.368 76 40 0 249 324 333 408 2.61e-18 85.9
Msa1328930 MtrunA17_Chr1g0150281 49.231 65 33 0 266 330 141 205 2.88e-18 83.6
Msa1328930 MtrunA17_Chr8g0383251 55.556 63 27 1 262 324 105 166 3.08e-18 81.3
Msa1328930 MtrunA17_Chr7g0216891 54.839 62 28 0 266 327 220 281 3.31e-18 85.5
Msa1328930 MtrunA17_Chr4g0075201 48.684 76 39 0 249 324 251 326 3.83e-18 85.1
Msa1328930 MtrunA17_Chr2g0333851 55.000 60 27 0 263 322 167 226 6.16e-18 83.2
Msa1328930 MtrunA17_Chr2g0302391 54.839 62 28 0 266 327 212 273 6.38e-18 84.3
Msa1328930 MtrunA17_Chr4g0025061 54.839 62 28 0 266 327 361 422 1.02e-17 84.0
Msa1328930 MtrunA17_Chr1g0194481 45.238 84 43 2 241 322 132 214 4.76e-17 80.9
Msa1328930 MtrunA17_Chr3g0129321 44.186 86 44 2 240 322 90 174 5.89e-17 78.2
Msa1328930 MtrunA17_Chr8g0383351 45.455 77 37 2 251 323 142 217 8.94e-17 78.6
Msa1328930 MtrunA17_Chr4g0051881 45.070 71 38 1 252 322 165 234 1.05e-16 79.7
Msa1328930 MtrunA17_Chr2g0294231 44.706 85 46 1 248 332 186 269 1.20e-16 80.1
Msa1328930 MtrunA17_Chr1g0150271 50.000 62 31 0 263 324 99 160 1.27e-16 78.6
Msa1328930 MtrunA17_Chr5g0443131 47.887 71 36 1 252 322 144 213 1.42e-16 79.3
Msa1328930 MtrunA17_Chr7g0238921 43.478 92 47 3 232 322 93 180 2.00e-16 79.0
Msa1328930 MtrunA17_Chr5g0447701 53.448 58 26 1 266 323 253 309 2.03e-16 79.7
Msa1328930 MtrunA17_Chr3g0129361 46.053 76 37 2 251 323 127 201 2.27e-16 77.0
Msa1328930 MtrunA17_Chr3g0126391 40.187 107 50 6 234 333 100 199 3.11e-16 78.6
Msa1328930 MtrunA17_Chr7g0248721 38.835 103 50 4 231 322 96 196 7.66e-16 75.5
Msa1328930 MtrunA17_Chr4g0025051 51.613 62 30 0 266 327 336 397 1.27e-15 77.8
Msa1328930 MtrunA17_Chr5g0418781 38.947 95 55 2 241 333 98 191 1.92e-15 75.5
Msa1328930 MtrunA17_Chr7g0224801 46.875 64 33 1 261 324 89 151 3.80e-15 72.4
Msa1328930 MtrunA17_Chr1g0188941 47.619 63 32 1 262 324 48 109 8.25e-15 70.1
Msa1328930 MtrunA17_Chr4g0068541 44.595 74 40 1 249 322 192 264 8.78e-15 74.7
Msa1328930 MtrunA17_Chr6g0485431 36.735 98 49 3 239 324 117 213 5.65e-14 72.0
Msa1328930 MtrunA17_Chr1g0189391 39.623 106 48 5 230 323 54 155 9.02e-14 71.2
Msa1328930 MtrunA17_Chr7g0275531 48.438 64 31 1 266 327 119 182 1.95e-13 70.1
Msa1328930 MtrunA17_Chr5g0402931 53.448 58 24 2 265 322 123 177 3.03e-13 67.4
Msa1328930 MtrunA17_Chr8g0347251 42.529 87 46 3 237 320 108 193 7.84e-13 68.6
Msa1328930 MtrunA17_Chr8g0387981 47.368 57 28 1 266 320 133 189 1.03e-12 68.2
Msa1328930 MtrunA17_Chr8g0386241 39.189 74 43 2 262 334 100 172 2.77e-12 64.7
Msa1328930 MtrunA17_Chr4g0024391 45.161 62 34 0 266 327 230 291 3.49e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328930 AT2G23320.1 51.404 356 115 15 1 337 1 317 7.37e-93 280
Msa1328930 AT4G24240.1 45.238 378 115 14 1 324 1 340 5.82e-85 261
Msa1328930 AT4G31550.1 47.429 350 117 16 1 326 1 307 4.18e-81 250
Msa1328930 AT4G31550.2 46.857 350 118 16 1 326 1 306 1.14e-79 246
Msa1328930 AT2G24570.1 44.242 330 115 13 20 322 13 300 1.15e-70 223
Msa1328930 AT2G23320.2 46.488 299 107 14 1 285 1 260 6.56e-60 193
Msa1328930 AT5G28650.1 42.568 296 99 10 85 323 39 320 1.21e-56 187
Msa1328930 AT3G04670.1 42.667 300 93 13 85 323 39 320 1.97e-56 186
Msa1328930 AT4G24240.2 40.118 339 111 14 1 285 1 301 1.09e-53 178
Msa1328930 AT2G30590.1 76.147 109 22 3 216 322 264 370 2.52e-52 177
Msa1328930 AT4G31550.3 42.395 309 110 16 1 285 1 265 2.03e-50 169
Msa1328930 AT1G29280.1 57.609 92 33 2 237 322 40 131 6.80e-30 115
Msa1328930 AT3G04670.2 36.466 266 90 13 85 289 39 286 9.07e-29 112
Msa1328930 AT2G34830.1 56.322 87 33 1 241 322 186 272 8.13e-26 107
Msa1328930 AT2G34830.2 56.322 87 33 1 241 322 195 281 8.19e-26 107
Msa1328930 AT3G58710.1 52.475 101 32 2 240 329 40 135 8.63e-26 104
Msa1328930 AT4G01250.1 50.000 108 45 2 215 322 87 185 1.14e-25 104
Msa1328930 AT1G30650.1 56.322 87 33 1 241 322 188 274 1.18e-24 103
Msa1328930 AT3G58710.2 52.632 95 39 2 241 329 40 134 1.38e-24 101
Msa1328930 AT2G38470.1 52.941 85 36 2 249 330 343 426 2.75e-23 100
Msa1328930 AT2G38470.1 52.632 57 25 2 266 322 185 239 3.01e-13 70.9
Msa1328930 AT2G04880.2 53.425 73 33 1 252 324 270 341 3.12e-21 94.4
Msa1328930 AT2G04880.1 53.425 73 33 1 252 324 294 365 3.58e-21 94.4
Msa1328930 AT5G26170.1 54.167 72 32 1 252 323 100 170 4.10e-21 89.4
Msa1328930 AT5G52830.1 50.000 82 37 1 241 322 145 222 9.48e-21 92.0
Msa1328930 AT4G23550.1 53.247 77 32 1 248 324 127 199 1.36e-20 90.9
Msa1328930 AT5G56270.1 51.220 82 36 2 249 327 468 548 1.68e-20 92.8
Msa1328930 AT5G56270.1 49.123 57 27 2 266 322 274 328 6.10e-11 63.9
Msa1328930 AT4G26640.5 50.000 82 40 1 249 330 189 269 1.72e-20 91.7
Msa1328930 AT4G26640.6 50.000 82 40 1 249 330 189 269 1.72e-20 91.7
Msa1328930 AT4G26640.4 50.000 82 40 1 249 330 189 269 1.72e-20 91.7
Msa1328930 AT4G26640.3 50.000 82 40 1 249 330 189 269 1.72e-20 91.7
Msa1328930 AT4G26640.7 50.000 82 40 1 249 330 325 405 2.53e-20 92.0
Msa1328930 AT4G26640.2 50.000 82 40 1 249 330 365 445 2.64e-20 92.0
Msa1328930 AT4G26640.1 50.000 82 40 1 249 330 293 373 2.70e-20 92.0
Msa1328930 AT1G13960.2 53.165 79 33 2 249 324 237 314 2.78e-20 90.9
Msa1328930 AT1G13960.2 56.452 62 24 3 262 322 72 131 1.75e-15 77.0
Msa1328930 AT1G13960.1 53.165 79 33 2 249 324 390 467 5.77e-20 90.9
Msa1328930 AT1G13960.1 55.556 63 25 3 261 322 224 284 2.35e-15 77.4
Msa1328930 AT2G03340.1 49.438 89 41 2 249 334 396 483 8.53e-20 90.5
Msa1328930 AT2G03340.1 51.389 72 32 3 261 331 245 314 9.28e-16 78.6
Msa1328930 AT5G07100.2 43.678 87 45 2 241 324 114 199 1.16e-19 86.7
Msa1328930 AT5G07100.2 49.123 57 28 1 266 322 25 80 2.78e-12 65.9
Msa1328930 AT5G07100.4 43.678 87 45 2 241 324 114 199 1.16e-19 86.7
Msa1328930 AT5G07100.4 49.123 57 28 1 266 322 25 80 2.78e-12 65.9
Msa1328930 AT5G07100.5 43.678 87 45 2 241 324 114 199 1.16e-19 86.7
Msa1328930 AT5G07100.5 49.123 57 28 1 266 322 25 80 2.78e-12 65.9
Msa1328930 AT5G07100.3 43.678 87 45 2 241 324 114 199 1.16e-19 86.7
Msa1328930 AT5G07100.3 49.123 57 28 1 266 322 25 80 2.78e-12 65.9
Msa1328930 AT4G30935.1 55.932 59 25 1 266 324 332 389 1.20e-19 89.7
Msa1328930 AT5G07100.1 42.574 101 53 3 225 324 196 292 1.65e-19 87.8
Msa1328930 AT5G07100.1 49.123 57 28 1 266 322 118 173 3.53e-12 66.6
Msa1328930 AT3G01080.2 51.899 79 34 2 249 324 325 402 2.25e-19 89.0
Msa1328930 AT3G01080.2 54.839 62 25 3 262 322 201 260 1.48e-14 74.7
Msa1328930 AT4G04450.2 41.414 99 55 1 229 324 159 257 2.46e-19 89.0
Msa1328930 AT3G01080.1 51.899 79 34 2 249 324 287 364 2.72e-19 88.6
Msa1328930 AT3G01080.1 54.839 62 25 3 262 322 163 222 1.87e-14 74.3
Msa1328930 AT4G04450.1 41.414 99 55 1 229 324 253 351 4.73e-19 88.6
Msa1328930 AT1G68150.1 59.322 59 24 0 266 324 236 294 5.11e-19 87.4
Msa1328930 AT5G64810.1 40.000 125 64 4 219 334 57 179 6.06e-19 84.0
Msa1328930 AT1G62300.1 50.000 76 38 0 249 324 296 371 8.27e-19 87.8
Msa1328930 AT5G15130.2 59.322 59 24 0 266 324 186 244 9.57e-19 87.4
Msa1328930 AT2G44745.1 43.902 82 42 2 244 322 121 201 1.05e-18 84.0
Msa1328930 AT4G39410.1 45.455 88 44 2 239 323 194 280 1.09e-18 85.5
Msa1328930 AT5G15130.1 59.322 59 24 0 266 324 228 286 1.13e-18 87.4
Msa1328930 AT4G22070.4 50.000 76 38 0 249 324 281 356 1.43e-18 87.0
Msa1328930 AT4G22070.3 50.000 76 38 0 249 324 281 356 1.43e-18 87.0
Msa1328930 AT4G22070.2 50.000 76 38 0 249 324 281 356 1.43e-18 87.0
Msa1328930 AT4G22070.1 50.000 76 38 0 249 324 281 356 1.43e-18 87.0
Msa1328930 AT4G26440.1 45.652 92 49 1 236 327 343 433 2.10e-18 86.7
Msa1328930 AT4G26440.1 50.820 61 27 3 264 323 176 234 2.06e-11 65.5
Msa1328930 AT1G29860.1 42.553 94 53 1 229 322 100 192 2.87e-18 84.0
Msa1328930 AT5G45050.1 42.017 119 64 2 205 322 1123 1237 4.79e-18 85.9
Msa1328930 AT5G45050.4 42.017 119 64 2 205 322 984 1098 4.90e-18 85.9
Msa1328930 AT5G45050.2 42.017 119 64 2 205 322 1095 1209 5.04e-18 85.9
Msa1328930 AT4G18170.1 41.667 84 48 1 241 324 148 230 8.95e-18 83.2
Msa1328930 AT5G45260.1 48.235 85 36 2 240 322 1189 1267 9.17e-18 85.1
Msa1328930 AT1G80840.1 48.571 70 35 1 263 331 144 213 1.01e-17 82.8
Msa1328930 AT5G49520.1 48.649 74 37 1 249 322 205 277 1.26e-17 83.6
Msa1328930 AT1G55600.1 48.052 77 36 2 249 322 288 363 1.57e-17 83.6
Msa1328930 AT4G01720.1 46.341 82 38 1 243 324 223 298 2.55e-17 83.2
Msa1328930 AT2G37260.2 54.688 64 28 1 261 324 263 325 3.64e-17 81.6
Msa1328930 AT2G37260.2 53.448 58 25 2 266 323 84 139 1.81e-13 70.9
Msa1328930 AT2G37260.3 54.688 64 28 1 261 324 265 327 3.81e-17 81.6
Msa1328930 AT2G37260.3 53.448 58 25 2 266 323 86 141 1.83e-13 70.9
Msa1328930 AT2G37260.1 57.627 59 24 1 266 324 350 407 4.29e-17 82.0
Msa1328930 AT2G37260.1 53.448 58 25 2 266 323 166 221 1.68e-13 71.2
Msa1328930 AT4G31800.2 45.205 73 40 0 250 322 96 168 4.58e-17 79.7
Msa1328930 AT3G62340.1 46.914 81 42 1 242 322 95 174 6.07e-17 80.1
Msa1328930 AT4G31800.1 45.205 73 40 0 250 322 161 233 8.18e-17 80.1
Msa1328930 AT2G47260.1 45.238 84 44 2 239 322 149 230 9.09e-17 80.5
Msa1328930 AT2G40740.1 39.815 108 59 3 216 320 126 230 1.15e-16 79.7
Msa1328930 AT2G40740.3 39.815 108 59 3 216 320 135 239 1.48e-16 79.3
Msa1328930 AT5G41570.1 41.860 86 46 2 240 322 70 154 1.61e-16 77.0
Msa1328930 AT1G18860.1 55.932 59 26 0 266 324 240 298 2.58e-16 80.1
Msa1328930 AT1G69310.4 43.902 82 42 2 244 322 123 203 2.64e-16 78.6
Msa1328930 AT1G69310.2 43.902 82 42 2 244 322 123 203 2.64e-16 78.6
Msa1328930 AT1G69310.1 43.902 82 42 2 244 322 123 203 2.64e-16 78.6
Msa1328930 AT2G30250.1 44.737 76 41 1 252 327 315 389 3.14e-16 79.3
Msa1328930 AT3G01970.1 47.692 65 33 1 261 325 61 124 5.31e-16 74.7
Msa1328930 AT5G46350.1 43.836 73 40 1 252 324 170 241 8.87e-16 77.4
Msa1328930 AT2G25000.2 51.724 58 28 0 266 323 104 161 9.25e-16 75.9
Msa1328930 AT2G25000.4 51.724 58 28 0 266 323 104 161 9.25e-16 75.9
Msa1328930 AT2G25000.3 51.724 58 28 0 266 323 126 183 1.70e-15 75.5
Msa1328930 AT2G25000.1 51.724 58 28 0 266 323 147 204 2.38e-15 75.5
Msa1328930 AT5G43290.1 56.140 57 24 1 266 322 115 170 2.45e-15 75.5
Msa1328930 AT2G46130.1 50.000 62 30 1 261 322 26 86 3.21e-15 71.2
Msa1328930 AT1G64000.1 49.180 61 30 1 262 322 111 170 3.93e-15 73.6
Msa1328930 AT2G21900.1 47.297 74 35 2 266 336 110 182 5.20e-15 73.2
Msa1328930 AT3G01080.3 54.839 62 25 3 262 322 201 260 8.83e-15 74.7
Msa1328930 AT5G13080.1 48.387 62 31 1 261 322 63 123 1.43e-14 70.5
Msa1328930 AT4G23810.1 38.583 127 68 4 202 320 91 215 1.31e-13 71.2
Msa1328930 AT1G69810.1 50.000 60 29 1 266 324 204 263 7.58e-13 69.3
Msa1328930 AT1G69810.2 50.000 60 29 1 266 324 146 205 9.13e-13 68.6
Msa1328930 AT4G11070.2 37.288 118 67 3 206 320 53 166 2.45e-12 67.0
Msa1328930 AT4G11070.1 37.288 118 67 3 206 320 85 198 3.05e-12 67.0
Msa1328930 AT1G69310.3 41.463 82 40 3 244 322 123 199 4.27e-12 66.2
Msa1328930 AT4G12020.6 49.123 57 27 2 266 322 469 523 7.86e-12 67.0
Msa1328930 AT4G12020.8 49.123 57 27 2 266 322 469 523 7.86e-12 67.0
Msa1328930 AT4G12020.1 49.123 57 27 2 266 322 469 523 8.32e-12 67.0
Msa1328930 AT4G12020.9 49.123 57 27 2 266 322 469 523 8.32e-12 67.0
Msa1328930 AT4G12020.10 49.123 57 27 2 266 322 469 523 8.67e-12 67.0
Msa1328930 AT4G12020.7 49.123 57 27 2 266 322 469 523 8.70e-12 67.0
Msa1328930 AT4G12020.3 49.123 57 27 2 266 322 469 523 8.75e-12 67.0
Msa1328930 AT4G12020.2 49.123 57 27 2 266 322 469 523 9.16e-12 67.0
Msa1328930 AT4G12020.4 49.123 57 27 2 266 322 469 523 9.24e-12 67.0
Msa1328930 AT4G12020.5 49.123 57 27 2 266 322 402 456 1.01e-11 66.6
Msa1328930 AT4G12020.11 49.123 57 27 2 266 322 469 523 1.17e-11 66.6
Msa1328930 AT5G24110.1 46.032 63 32 1 266 326 114 176 1.89e-11 64.3
Msa1328930 AT2G46130.2 46.774 62 28 2 261 322 26 82 3.82e-11 59.7

Find 85 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCATTTCTCTTGATTAT+AGG 0.225392 8_4:-46961521 None:intergenic
TACTCAATGTTGAAGGAAAT+TGG 0.248677 8_4:+46962586 Msa1328930:three_prime_UTR
CTAAACCAGAAGCTGCTTCT+TGG 0.260761 8_4:-46961145 None:intergenic
TGAGATTGAAGAGGGTTGTT+AGG 0.274491 8_4:+46961940 Msa1328930:CDS
TTCCACCAGATGATTATTCT+TGG 0.275431 8_4:+46961994 Msa1328930:CDS
CAATAACAACAACGCTACTA+TGG 0.291413 8_4:+46961268 Msa1328930:CDS
CTCTCTACATGCTTTCTTGC+TGG 0.296000 8_4:-46962388 None:intergenic
AGTAAATTGTTGGTTGGTTA+TGG 0.298135 8_4:+46962542 Msa1328930:three_prime_UTR
GCGTTGTTGTTATTGTTGTT+AGG 0.306679 8_4:-46961260 None:intergenic
GGATGAGGTGAACCTTTAAT+AGG 0.307884 8_4:-46962035 None:intergenic
GATTATTCTTGGAGAAAATA+TGG 0.308918 8_4:+46962005 Msa1328930:CDS
TATGGTCAGAAACCTATTAA+AGG 0.337402 8_4:+46962023 Msa1328930:CDS
GCTGTCCAAGAAGCAGCTTC+TGG 0.338762 8_4:+46961140 Msa1328930:CDS
TGTGATGGTGGTGGTGGTTG+TGG 0.342656 8_4:-46961407 None:intergenic
GAAGTGTAGCTCTGAAACTT+TGG 0.343051 8_4:+46961724 Msa1328930:CDS
AATAGTCAAGATGGTGGATT+TGG 0.345890 8_4:+46962642 Msa1328930:three_prime_UTR
GGTGGTGGTGGTTGTGGTAA+AGG 0.363573 8_4:-46961401 None:intergenic
CTGCTTTGGTTGTGAAAGCT+TGG 0.372478 8_4:-46961109 None:intergenic
CGTTGTTGTTATTGTTGTTA+GGG 0.373125 8_4:-46961259 None:intergenic
GTTCAGAAGGTTGAACTTGT+AGG 0.380241 8_4:-46961433 None:intergenic
GCCATCTTCAAGCTAATTGC+AGG 0.382493 8_4:-46961966 None:intergenic
AGCTCTGAAACTTTGGGTTC+TGG 0.383492 8_4:+46961731 Msa1328930:CDS
TCAAAATGGTAGTAAATTGT+TGG 0.395296 8_4:+46962532 Msa1328930:three_prime_UTR
CTGTCTCATGTTTCATCTGT+TGG 0.405470 8_4:+46961668 Msa1328930:CDS
GGTGTAGCGTTGAAAATCAT+TGG 0.411117 8_4:-46961455 None:intergenic
AAGTGTAGCTCTGAAACTTT+GGG 0.416277 8_4:+46961725 Msa1328930:CDS
TGAAATAACACGTTTGAACT+TGG 0.416358 8_4:-46961333 None:intergenic
GAGATTGAAGAGGGTTGTTA+GGG 0.422799 8_4:+46961941 Msa1328930:CDS
TCTCTTCTTCTTCATTGAAA+AGG 0.427957 8_4:+46961702 Msa1328930:CDS
AGGGTTTGTGATGGTGGTGG+TGG 0.429408 8_4:-46961413 None:intergenic
AAGATGGTGGATTTGGTAAA+CGG 0.429455 8_4:+46962649 Msa1328930:three_prime_UTR
GTGATTGTGCTCTCCTTCAT+AGG 0.430732 8_4:-46962443 None:intergenic
ATAAAGAGGTAGAAAGAGAG+AGG 0.442700 8_4:-46960980 None:intergenic
TTATTGTTGTTAGGGTTTGA+AGG 0.452647 8_4:-46961251 None:intergenic
ATGAGAGAGAGAAAATAAAA+CGG 0.456826 8_4:-46961009 None:intergenic
TTTCTCCAAGAATAATCATC+TGG 0.457317 8_4:-46961999 None:intergenic
ACTTGTAGGGTTTGTGATGG+TGG 0.459002 8_4:-46961419 None:intergenic
AATGGTAGTAAATTGTTGGT+TGG 0.464968 8_4:+46962536 Msa1328930:three_prime_UTR
TTCAGAAGGTTGAACTTGTA+GGG 0.480010 8_4:-46961432 None:intergenic
TCCTGCAATTAGCTTGAAGA+TGG 0.484264 8_4:+46961965 Msa1328930:CDS
TCTTTCATTTCTTCACTCAC+TGG 0.488282 8_4:+46961584 Msa1328930:CDS
GTTAGGGTTTGAAGGTGAAA+AGG 0.489191 8_4:-46961243 None:intergenic
TGTAGGGTTTGTGATGGTGG+TGG 0.490108 8_4:-46961416 None:intergenic
TTGAAAATCATTGGTTCAGA+AGG 0.492153 8_4:-46961446 None:intergenic
GACCATAGAAGAAGAAGAAG+AGG 0.492450 8_4:-46961037 None:intergenic
AGGAAGAAGATGAAGAAGGT+TGG 0.495301 8_4:-46961217 None:intergenic
ATGCTGGTGGTTACCTATGA+AGG 0.503013 8_4:+46962430 Msa1328930:CDS
TGAGAGAGAGAAAATAAAAC+GGG 0.503917 8_4:-46961008 None:intergenic
TCTTGATGATGCTTCTATGC+TGG 0.510730 8_4:+46962414 Msa1328930:CDS
GTTTGAAGGTGAAAAGGAAG+AGG 0.521249 8_4:-46961237 None:intergenic
ACCGTCGATGTCGTCGCCGG+CGG 0.525117 8_4:+46961625 Msa1328930:CDS
TCTTGATTATAGGACGGTGA+AGG 0.526165 8_4:-46961511 None:intergenic
TACAAGTGCAGTAGTGTGAG+AGG 0.529683 8_4:+46962361 Msa1328930:CDS
AAAGTTAAAGAAAAGAAAGT+GGG 0.531483 8_4:+46962684 Msa1328930:three_prime_UTR
CCGTCGATGTCGTCGCCGGC+GGG 0.532795 8_4:+46961626 Msa1328930:CDS
GAAGAGGAAGAAGATGAAGA+AGG 0.545088 8_4:-46961221 None:intergenic
TGTTGCCACAACAATGGCCG+TGG 0.553102 8_4:+46961061 Msa1328930:exon
GAGCTCCACGGCCATTGTTG+TGG 0.555579 8_4:-46961066 None:intergenic
TGAACTTGTAGGGTTTGTGA+TGG 0.556445 8_4:-46961422 None:intergenic
ATGGCCGTGGAGCTCATGAC+AGG 0.560730 8_4:+46961074 Msa1328930:CDS
TAGGAAAATGAGATTGAAGA+GGG 0.561189 8_4:+46961932 Msa1328930:CDS
GTAGGAAAATGAGATTGAAG+AGG 0.565741 8_4:+46961931 Msa1328930:intron
CTCCAAGAATAATCATCTGG+TGG 0.566598 8_4:-46961996 None:intergenic
CATTTCTCTTGATTATAGGA+CGG 0.568226 8_4:-46961517 None:intergenic
CAAAGTTAAAGAAAAGAAAG+TGG 0.571413 8_4:+46962683 Msa1328930:three_prime_UTR
TAAAGAGGTAGAAAGAGAGA+GGG 0.577710 8_4:-46960979 None:intergenic
CTTGATTATAGGACGGTGAA+GGG 0.579899 8_4:-46961510 None:intergenic
TGATGATGCTTCTATGCTGG+TGG 0.581385 8_4:+46962417 Msa1328930:CDS
AGGGTAGTAGAAACAGTTGG+TGG 0.589506 8_4:-46961491 None:intergenic
TTAAAGGTTCACCTCATCCA+AGG 0.601665 8_4:+46962039 Msa1328930:CDS
ACAACCGTCGATGTCGTCGC+CGG 0.604344 8_4:+46961622 Msa1328930:CDS
AATTGAAAGTACCTTGGATG+AGG 0.611960 8_4:-46962050 None:intergenic
TAAAACGGGTGAGAATAAAG+AGG 0.617578 8_4:-46960994 None:intergenic
AAGTTAAAGAAAAGAAAGTG+GGG 0.621689 8_4:+46962685 Msa1328930:three_prime_UTR
TGGTCTTGTTGCCACAACAA+TGG 0.629773 8_4:+46961055 Msa1328930:exon
TTCAATGAAGAAGAAGAGAG+TGG 0.633021 8_4:-46961698 None:intergenic
CCCGCCGGCGACGACATCGA+CGG 0.645142 8_4:-46961626 None:intergenic
GTAGCCTGTCATGAGCTCCA+CGG 0.648816 8_4:-46961078 None:intergenic
AATGAAGAAGAAGAGAGTGG+TGG 0.649002 8_4:-46961695 None:intergenic
GTTGGTGGAATCTGTTGCAA+AGG 0.653955 8_4:-46961476 None:intergenic
TGAAGGGTAGTAGAAACAGT+TGG 0.656645 8_4:-46961494 None:intergenic
TCAATGTTGAAGGAAATTGG+TGG 0.676870 8_4:+46962589 Msa1328930:three_prime_UTR
ACAAGTGCAGTAGTGTGAGA+GGG 0.679618 8_4:+46962362 Msa1328930:CDS
ACTTTGGGTTCTGGAAAGTG+TGG 0.685665 8_4:+46961740 Msa1328930:CDS
GTAATCTGAAAAGCACCCGC+CGG 0.685924 8_4:-46961641 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATAGAAAAATAAATAA+AGG - chr8_4:46961853-46961872 None:intergenic 10.0%
!! AATTGTACTATAAAATAAAT+AGG - chr8_4:46962121-46962140 None:intergenic 10.0%
!! CAATATAGAAAAATAAATAA+AGG - chr8_4:46961853-46961872 None:intergenic 10.0%
!! AATTGTACTATAAAATAAAT+AGG - chr8_4:46962121-46962140 None:intergenic 10.0%
!!! TTTTTTCTTATATTCTGAAT+TGG + chr8_4:46961899-46961918 Msa1328930:intron 15.0%
!!! TTTTTCTTATATTCTGAATT+GGG + chr8_4:46961900-46961919 Msa1328930:intron 15.0%
!! TATAATCATTCATAAACATT+TGG - chr8_4:46962228-46962247 None:intergenic 15.0%
!! AAATGTTTATGAATGATTAT+AGG + chr8_4:46962227-46962246 Msa1328930:intron 15.0%
!!! TTTTTTCTTATATTCTGAAT+TGG + chr8_4:46961899-46961918 Msa1328930:intron 15.0%
!!! TTTTTCTTATATTCTGAATT+GGG + chr8_4:46961900-46961919 Msa1328930:intron 15.0%
!! TATAATCATTCATAAACATT+TGG - chr8_4:46962228-46962247 None:intergenic 15.0%
!! AAATGTTTATGAATGATTAT+AGG + chr8_4:46962227-46962246 Msa1328930:intron 15.0%
!!! TATTTGACTTTTTTGTGTAA+TGG + chr8_4:46962258-46962277 Msa1328930:intron 20.0%
!!! ATTTGACTTTTTTGTGTAAT+GGG + chr8_4:46962259-46962278 Msa1328930:intron 20.0%
!!! TAATTTTTGGAACAATTACA+GGG + chr8_4:46962333-46962352 Msa1328930:intron 20.0%
!!! TGTTAGTACATTTTTCAAAA+TGG + chr8_4:46962518-46962537 Msa1328930:three_prime_UTR 20.0%
!! AAAGTTAAAGAAAAGAAAGT+GGG + chr8_4:46962684-46962703 Msa1328930:three_prime_UTR 20.0%
!!! TATTTGACTTTTTTGTGTAA+TGG + chr8_4:46962258-46962277 Msa1328930:intron 20.0%
!!! ATTTGACTTTTTTGTGTAAT+GGG + chr8_4:46962259-46962278 Msa1328930:intron 20.0%
!!! TAATTTTTGGAACAATTACA+GGG + chr8_4:46962333-46962352 Msa1328930:intron 20.0%
!!! TGTTAGTACATTTTTCAAAA+TGG + chr8_4:46962518-46962537 Msa1328930:three_prime_UTR 20.0%
!! AAAGTTAAAGAAAAGAAAGT+GGG + chr8_4:46962684-46962703 Msa1328930:three_prime_UTR 20.0%
! ATGAGAGAGAGAAAATAAAA+CGG - chr8_4:46961012-46961031 None:intergenic 25.0%
! GAATCATTTCTCTTGATTAT+AGG - chr8_4:46961524-46961543 None:intergenic 25.0%
!!! TTTTTTTGGAACAATGACAA+CGG - chr8_4:46961778-46961797 None:intergenic 25.0%
!!! AGATTTCACATACCTTTTTT+TGG - chr8_4:46961792-46961811 None:intergenic 25.0%
!!! GATTCTTTTGAAGAAAGTTT+AGG - chr8_4:46961825-46961844 None:intergenic 25.0%
! GATTATTCTTGGAGAAAATA+TGG + chr8_4:46962005-46962024 Msa1328930:CDS 25.0%
!!! TAATTGAATTGAAAGTACCT+TGG - chr8_4:46962059-46962078 None:intergenic 25.0%
! AATAAATAGGTTCATACGTA+GGG - chr8_4:46962108-46962127 None:intergenic 25.0%
! AAATAAATAGGTTCATACGT+AGG - chr8_4:46962109-46962128 None:intergenic 25.0%
!!! TGCTGATTTAGTGTAATTTT+TGG + chr8_4:46962320-46962339 Msa1328930:intron 25.0%
!!! GTAATTTTTGGAACAATTAC+AGG + chr8_4:46962332-46962351 Msa1328930:intron 25.0%
!!! AATTTTTGGAACAATTACAG+GGG + chr8_4:46962334-46962353 Msa1328930:intron 25.0%
! TCAAAATGGTAGTAAATTGT+TGG + chr8_4:46962532-46962551 Msa1328930:three_prime_UTR 25.0%
! TCCTTAAAAAATAGTCAAGA+TGG + chr8_4:46962633-46962652 Msa1328930:three_prime_UTR 25.0%
!!! ACCATCTTGACTATTTTTTA+AGG - chr8_4:46962637-46962656 None:intergenic 25.0%
! TTAAAAAATAGTCAAGATGG+TGG + chr8_4:46962636-46962655 Msa1328930:three_prime_UTR 25.0%
! CAAAGTTAAAGAAAAGAAAG+TGG + chr8_4:46962683-46962702 Msa1328930:three_prime_UTR 25.0%
! AAGTTAAAGAAAAGAAAGTG+GGG + chr8_4:46962685-46962704 Msa1328930:three_prime_UTR 25.0%
! ATGAGAGAGAGAAAATAAAA+CGG - chr8_4:46961012-46961031 None:intergenic 25.0%
! GAATCATTTCTCTTGATTAT+AGG - chr8_4:46961524-46961543 None:intergenic 25.0%
!!! TTTTTTTGGAACAATGACAA+CGG - chr8_4:46961778-46961797 None:intergenic 25.0%
!!! AGATTTCACATACCTTTTTT+TGG - chr8_4:46961792-46961811 None:intergenic 25.0%
!!! GATTCTTTTGAAGAAAGTTT+AGG - chr8_4:46961825-46961844 None:intergenic 25.0%
! GATTATTCTTGGAGAAAATA+TGG + chr8_4:46962005-46962024 Msa1328930:CDS 25.0%
!!! TAATTGAATTGAAAGTACCT+TGG - chr8_4:46962059-46962078 None:intergenic 25.0%
! AATAAATAGGTTCATACGTA+GGG - chr8_4:46962108-46962127 None:intergenic 25.0%
! AAATAAATAGGTTCATACGT+AGG - chr8_4:46962109-46962128 None:intergenic 25.0%
!!! TGCTGATTTAGTGTAATTTT+TGG + chr8_4:46962320-46962339 Msa1328930:intron 25.0%
!!! GTAATTTTTGGAACAATTAC+AGG + chr8_4:46962332-46962351 Msa1328930:intron 25.0%
!!! AATTTTTGGAACAATTACAG+GGG + chr8_4:46962334-46962353 Msa1328930:intron 25.0%
! TCAAAATGGTAGTAAATTGT+TGG + chr8_4:46962532-46962551 Msa1328930:three_prime_UTR 25.0%
! TCCTTAAAAAATAGTCAAGA+TGG + chr8_4:46962633-46962652 Msa1328930:three_prime_UTR 25.0%
!!! ACCATCTTGACTATTTTTTA+AGG - chr8_4:46962637-46962656 None:intergenic 25.0%
! TTAAAAAATAGTCAAGATGG+TGG + chr8_4:46962636-46962655 Msa1328930:three_prime_UTR 25.0%
! CAAAGTTAAAGAAAAGAAAG+TGG + chr8_4:46962683-46962702 Msa1328930:three_prime_UTR 25.0%
TGAGAGAGAGAAAATAAAAC+GGG - chr8_4:46961011-46961030 None:intergenic 30.0%
! TTATTGTTGTTAGGGTTTGA+AGG - chr8_4:46961254-46961273 None:intergenic 30.0%
! CGTTGTTGTTATTGTTGTTA+GGG - chr8_4:46961262-46961281 None:intergenic 30.0%
TGAAATAACACGTTTGAACT+TGG - chr8_4:46961336-46961355 None:intergenic 30.0%
!! TTGAAAATCATTGGTTCAGA+AGG - chr8_4:46961449-46961468 None:intergenic 30.0%
CATTTCTCTTGATTATAGGA+CGG - chr8_4:46961520-46961539 None:intergenic 30.0%
! AATTTTTCATACTCTTCTGC+TGG + chr8_4:46961557-46961576 Msa1328930:CDS 30.0%
TCTCTTCTTCTTCATTGAAA+AGG + chr8_4:46961702-46961721 Msa1328930:CDS 30.0%
GTTGTCATTGTTCCAAAAAA+AGG + chr8_4:46961777-46961796 Msa1328930:CDS 30.0%
TAGGAAAATGAGATTGAAGA+GGG + chr8_4:46961932-46961951 Msa1328930:CDS 30.0%
TTTCTCCAAGAATAATCATC+TGG - chr8_4:46962002-46962021 None:intergenic 30.0%
TATGGTCAGAAACCTATTAA+AGG + chr8_4:46962023-46962042 Msa1328930:CDS 30.0%
ATAAATAGGTTCATACGTAG+GGG - chr8_4:46962107-46962126 None:intergenic 30.0%
AATGGTAGTAAATTGTTGGT+TGG + chr8_4:46962536-46962555 Msa1328930:three_prime_UTR 30.0%
! AGTAAATTGTTGGTTGGTTA+TGG + chr8_4:46962542-46962561 Msa1328930:three_prime_UTR 30.0%
! GATGTTTTACTCAATGTTGA+AGG + chr8_4:46962579-46962598 Msa1328930:three_prime_UTR 30.0%
TACTCAATGTTGAAGGAAAT+TGG + chr8_4:46962586-46962605 Msa1328930:three_prime_UTR 30.0%
TGAGAGAGAGAAAATAAAAC+GGG - chr8_4:46961011-46961030 None:intergenic 30.0%
! TTATTGTTGTTAGGGTTTGA+AGG - chr8_4:46961254-46961273 None:intergenic 30.0%
! CGTTGTTGTTATTGTTGTTA+GGG - chr8_4:46961262-46961281 None:intergenic 30.0%
TGAAATAACACGTTTGAACT+TGG - chr8_4:46961336-46961355 None:intergenic 30.0%
!! TTGAAAATCATTGGTTCAGA+AGG - chr8_4:46961449-46961468 None:intergenic 30.0%
CATTTCTCTTGATTATAGGA+CGG - chr8_4:46961520-46961539 None:intergenic 30.0%
! AATTTTTCATACTCTTCTGC+TGG + chr8_4:46961557-46961576 Msa1328930:CDS 30.0%
TCTCTTCTTCTTCATTGAAA+AGG + chr8_4:46961702-46961721 Msa1328930:CDS 30.0%
GTTGTCATTGTTCCAAAAAA+AGG + chr8_4:46961777-46961796 Msa1328930:CDS 30.0%
TAGGAAAATGAGATTGAAGA+GGG + chr8_4:46961932-46961951 Msa1328930:CDS 30.0%
TTTCTCCAAGAATAATCATC+TGG - chr8_4:46962002-46962021 None:intergenic 30.0%
TATGGTCAGAAACCTATTAA+AGG + chr8_4:46962023-46962042 Msa1328930:CDS 30.0%
ATAAATAGGTTCATACGTAG+GGG - chr8_4:46962107-46962126 None:intergenic 30.0%
AATGGTAGTAAATTGTTGGT+TGG + chr8_4:46962536-46962555 Msa1328930:three_prime_UTR 30.0%
! AGTAAATTGTTGGTTGGTTA+TGG + chr8_4:46962542-46962561 Msa1328930:three_prime_UTR 30.0%
! GATGTTTTACTCAATGTTGA+AGG + chr8_4:46962579-46962598 Msa1328930:three_prime_UTR 30.0%
TACTCAATGTTGAAGGAAAT+TGG + chr8_4:46962586-46962605 Msa1328930:three_prime_UTR 30.0%
TAAAGAGGTAGAAAGAGAGA+GGG - chr8_4:46960982-46961001 None:intergenic 35.0%
ATAAAGAGGTAGAAAGAGAG+AGG - chr8_4:46960983-46961002 None:intergenic 35.0%
TAAAACGGGTGAGAATAAAG+AGG - chr8_4:46960997-46961016 None:intergenic 35.0%
ATCCTCTTCTTCTTCTTCTA+TGG + chr8_4:46961035-46961054 Msa1328930:five_prime_UTR 35.0%
! GCGTTGTTGTTATTGTTGTT+AGG - chr8_4:46961263-46961282 None:intergenic 35.0%
CAATAACAACAACGCTACTA+TGG + chr8_4:46961268-46961287 Msa1328930:CDS 35.0%
CTGCTTGAAAAAACAAGAAC+TGG + chr8_4:46961356-46961375 Msa1328930:CDS 35.0%
TTCAGAAGGTTGAACTTGTA+GGG - chr8_4:46961435-46961454 None:intergenic 35.0%
TCTTTCATTTCTTCACTCAC+TGG + chr8_4:46961584-46961603 Msa1328930:CDS 35.0%
TTCAATGAAGAAGAAGAGAG+TGG - chr8_4:46961701-46961720 None:intergenic 35.0%
!! AAGTGTAGCTCTGAAACTTT+GGG + chr8_4:46961725-46961744 Msa1328930:CDS 35.0%
! CTGAATTGGGTTGTTAAAGT+AGG + chr8_4:46961913-46961932 Msa1328930:intron 35.0%
GTAGGAAAATGAGATTGAAG+AGG + chr8_4:46961931-46961950 Msa1328930:intron 35.0%
TTCCACCAGATGATTATTCT+TGG + chr8_4:46961994-46962013 Msa1328930:CDS 35.0%
!! AATTGAAAGTACCTTGGATG+AGG - chr8_4:46962053-46962072 None:intergenic 35.0%
TCAATGTTGAAGGAAATTGG+TGG + chr8_4:46962589-46962608 Msa1328930:three_prime_UTR 35.0%
!! AATAGTCAAGATGGTGGATT+TGG + chr8_4:46962642-46962661 Msa1328930:three_prime_UTR 35.0%
!! AAGATGGTGGATTTGGTAAA+CGG + chr8_4:46962649-46962668 Msa1328930:three_prime_UTR 35.0%
TAAAGAGGTAGAAAGAGAGA+GGG - chr8_4:46960982-46961001 None:intergenic 35.0%
ATAAAGAGGTAGAAAGAGAG+AGG - chr8_4:46960983-46961002 None:intergenic 35.0%
TAAAACGGGTGAGAATAAAG+AGG - chr8_4:46960997-46961016 None:intergenic 35.0%
ATCCTCTTCTTCTTCTTCTA+TGG + chr8_4:46961035-46961054 Msa1328930:five_prime_UTR 35.0%
! GCGTTGTTGTTATTGTTGTT+AGG - chr8_4:46961263-46961282 None:intergenic 35.0%
CAATAACAACAACGCTACTA+TGG + chr8_4:46961268-46961287 Msa1328930:CDS 35.0%
CTGCTTGAAAAAACAAGAAC+TGG + chr8_4:46961356-46961375 Msa1328930:CDS 35.0%
TTCAGAAGGTTGAACTTGTA+GGG - chr8_4:46961435-46961454 None:intergenic 35.0%
TCTTTCATTTCTTCACTCAC+TGG + chr8_4:46961584-46961603 Msa1328930:CDS 35.0%
TTCAATGAAGAAGAAGAGAG+TGG - chr8_4:46961701-46961720 None:intergenic 35.0%
!! AAGTGTAGCTCTGAAACTTT+GGG + chr8_4:46961725-46961744 Msa1328930:CDS 35.0%
! CTGAATTGGGTTGTTAAAGT+AGG + chr8_4:46961913-46961932 Msa1328930:intron 35.0%
GTAGGAAAATGAGATTGAAG+AGG + chr8_4:46961931-46961950 Msa1328930:intron 35.0%
TTCCACCAGATGATTATTCT+TGG + chr8_4:46961994-46962013 Msa1328930:CDS 35.0%
!! AATTGAAAGTACCTTGGATG+AGG - chr8_4:46962053-46962072 None:intergenic 35.0%
TCAATGTTGAAGGAAATTGG+TGG + chr8_4:46962589-46962608 Msa1328930:three_prime_UTR 35.0%
!! AATAGTCAAGATGGTGGATT+TGG + chr8_4:46962642-46962661 Msa1328930:three_prime_UTR 35.0%
!! AAGATGGTGGATTTGGTAAA+CGG + chr8_4:46962649-46962668 Msa1328930:three_prime_UTR 35.0%
GACCATAGAAGAAGAAGAAG+AGG - chr8_4:46961040-46961059 None:intergenic 40.0%
! GACAGCATTTTCTTCTGCTT+TGG - chr8_4:46961126-46961145 None:intergenic 40.0%
AGGAAGAAGATGAAGAAGGT+TGG - chr8_4:46961220-46961239 None:intergenic 40.0%
GAAGAGGAAGAAGATGAAGA+AGG - chr8_4:46961224-46961243 None:intergenic 40.0%
GTTTGAAGGTGAAAAGGAAG+AGG - chr8_4:46961240-46961259 None:intergenic 40.0%
GTTAGGGTTTGAAGGTGAAA+AGG - chr8_4:46961246-46961265 None:intergenic 40.0%
TGAACTTGTAGGGTTTGTGA+TGG - chr8_4:46961425-46961444 None:intergenic 40.0%
GTTCAGAAGGTTGAACTTGT+AGG - chr8_4:46961436-46961455 None:intergenic 40.0%
! GGTGTAGCGTTGAAAATCAT+TGG - chr8_4:46961458-46961477 None:intergenic 40.0%
TGAAGGGTAGTAGAAACAGT+TGG - chr8_4:46961497-46961516 None:intergenic 40.0%
CTTGATTATAGGACGGTGAA+GGG - chr8_4:46961513-46961532 None:intergenic 40.0%
TCTTGATTATAGGACGGTGA+AGG - chr8_4:46961514-46961533 None:intergenic 40.0%
CTGTCTCATGTTTCATCTGT+TGG + chr8_4:46961668-46961687 Msa1328930:CDS 40.0%
AATGAAGAAGAAGAGAGTGG+TGG - chr8_4:46961698-46961717 None:intergenic 40.0%
!! GAAGTGTAGCTCTGAAACTT+TGG + chr8_4:46961724-46961743 Msa1328930:CDS 40.0%
TGAGATTGAAGAGGGTTGTT+AGG + chr8_4:46961940-46961959 Msa1328930:CDS 40.0%
GAGATTGAAGAGGGTTGTTA+GGG + chr8_4:46961941-46961960 Msa1328930:CDS 40.0%
! TCCTGCAATTAGCTTGAAGA+TGG + chr8_4:46961965-46961984 Msa1328930:CDS 40.0%
CTCCAAGAATAATCATCTGG+TGG - chr8_4:46961999-46962018 None:intergenic 40.0%
GGATGAGGTGAACCTTTAAT+AGG - chr8_4:46962038-46962057 None:intergenic 40.0%
TTAAAGGTTCACCTCATCCA+AGG + chr8_4:46962039-46962058 Msa1328930:CDS 40.0%
CTAGACAGTAGCTAGATGAA+TGG + chr8_4:46962201-46962220 Msa1328930:intron 40.0%
!! TCTTGATGATGCTTCTATGC+TGG + chr8_4:46962414-46962433 Msa1328930:CDS 40.0%
GACCATAGAAGAAGAAGAAG+AGG - chr8_4:46961040-46961059 None:intergenic 40.0%
! GACAGCATTTTCTTCTGCTT+TGG - chr8_4:46961126-46961145 None:intergenic 40.0%
AGGAAGAAGATGAAGAAGGT+TGG - chr8_4:46961220-46961239 None:intergenic 40.0%
GAAGAGGAAGAAGATGAAGA+AGG - chr8_4:46961224-46961243 None:intergenic 40.0%
GTTTGAAGGTGAAAAGGAAG+AGG - chr8_4:46961240-46961259 None:intergenic 40.0%
GTTAGGGTTTGAAGGTGAAA+AGG - chr8_4:46961246-46961265 None:intergenic 40.0%
TGAACTTGTAGGGTTTGTGA+TGG - chr8_4:46961425-46961444 None:intergenic 40.0%
GTTCAGAAGGTTGAACTTGT+AGG - chr8_4:46961436-46961455 None:intergenic 40.0%
! GGTGTAGCGTTGAAAATCAT+TGG - chr8_4:46961458-46961477 None:intergenic 40.0%
TGAAGGGTAGTAGAAACAGT+TGG - chr8_4:46961497-46961516 None:intergenic 40.0%
CTTGATTATAGGACGGTGAA+GGG - chr8_4:46961513-46961532 None:intergenic 40.0%
TCTTGATTATAGGACGGTGA+AGG - chr8_4:46961514-46961533 None:intergenic 40.0%
CTGTCTCATGTTTCATCTGT+TGG + chr8_4:46961668-46961687 Msa1328930:CDS 40.0%
AATGAAGAAGAAGAGAGTGG+TGG - chr8_4:46961698-46961717 None:intergenic 40.0%
!! GAAGTGTAGCTCTGAAACTT+TGG + chr8_4:46961724-46961743 Msa1328930:CDS 40.0%
TGAGATTGAAGAGGGTTGTT+AGG + chr8_4:46961940-46961959 Msa1328930:CDS 40.0%
GAGATTGAAGAGGGTTGTTA+GGG + chr8_4:46961941-46961960 Msa1328930:CDS 40.0%
! TCCTGCAATTAGCTTGAAGA+TGG + chr8_4:46961965-46961984 Msa1328930:CDS 40.0%
CTCCAAGAATAATCATCTGG+TGG - chr8_4:46961999-46962018 None:intergenic 40.0%
GGATGAGGTGAACCTTTAAT+AGG - chr8_4:46962038-46962057 None:intergenic 40.0%
TTAAAGGTTCACCTCATCCA+AGG + chr8_4:46962039-46962058 Msa1328930:CDS 40.0%
CTAGACAGTAGCTAGATGAA+TGG + chr8_4:46962201-46962220 Msa1328930:intron 40.0%
!! TCTTGATGATGCTTCTATGC+TGG + chr8_4:46962414-46962433 Msa1328930:CDS 40.0%
!! TGGTCTTGTTGCCACAACAA+TGG + chr8_4:46961055-46961074 Msa1328930:exon 45.0%
CTGCTTTGGTTGTGAAAGCT+TGG - chr8_4:46961112-46961131 None:intergenic 45.0%
CTAAACCAGAAGCTGCTTCT+TGG - chr8_4:46961148-46961167 None:intergenic 45.0%
ACTTGTAGGGTTTGTGATGG+TGG - chr8_4:46961422-46961441 None:intergenic 45.0%
! GTTGGTGGAATCTGTTGCAA+AGG - chr8_4:46961479-46961498 None:intergenic 45.0%
AGGGTAGTAGAAACAGTTGG+TGG - chr8_4:46961494-46961513 None:intergenic 45.0%
!! AGCTCTGAAACTTTGGGTTC+TGG + chr8_4:46961731-46961750 Msa1328930:CDS 45.0%
!! ACTTTGGGTTCTGGAAAGTG+TGG + chr8_4:46961740-46961759 Msa1328930:CDS 45.0%
GCCATCTTCAAGCTAATTGC+AGG - chr8_4:46961969-46961988 None:intergenic 45.0%
TACAAGTGCAGTAGTGTGAG+AGG + chr8_4:46962361-46962380 Msa1328930:CDS 45.0%
ACAAGTGCAGTAGTGTGAGA+GGG + chr8_4:46962362-46962381 Msa1328930:CDS 45.0%
CTCTCTACATGCTTTCTTGC+TGG - chr8_4:46962391-46962410 None:intergenic 45.0%
! TGATGATGCTTCTATGCTGG+TGG + chr8_4:46962417-46962436 Msa1328930:CDS 45.0%
ATGCTGGTGGTTACCTATGA+AGG + chr8_4:46962430-46962449 Msa1328930:CDS 45.0%
GTGATTGTGCTCTCCTTCAT+AGG - chr8_4:46962446-46962465 None:intergenic 45.0%
!! TGGTCTTGTTGCCACAACAA+TGG + chr8_4:46961055-46961074 Msa1328930:exon 45.0%
CTGCTTTGGTTGTGAAAGCT+TGG - chr8_4:46961112-46961131 None:intergenic 45.0%
CTAAACCAGAAGCTGCTTCT+TGG - chr8_4:46961148-46961167 None:intergenic 45.0%
ACTTGTAGGGTTTGTGATGG+TGG - chr8_4:46961422-46961441 None:intergenic 45.0%
! GTTGGTGGAATCTGTTGCAA+AGG - chr8_4:46961479-46961498 None:intergenic 45.0%
AGGGTAGTAGAAACAGTTGG+TGG - chr8_4:46961494-46961513 None:intergenic 45.0%
!! AGCTCTGAAACTTTGGGTTC+TGG + chr8_4:46961731-46961750 Msa1328930:CDS 45.0%
!! ACTTTGGGTTCTGGAAAGTG+TGG + chr8_4:46961740-46961759 Msa1328930:CDS 45.0%
GCCATCTTCAAGCTAATTGC+AGG - chr8_4:46961969-46961988 None:intergenic 45.0%
TACAAGTGCAGTAGTGTGAG+AGG + chr8_4:46962361-46962380 Msa1328930:CDS 45.0%
ACAAGTGCAGTAGTGTGAGA+GGG + chr8_4:46962362-46962381 Msa1328930:CDS 45.0%
CTCTCTACATGCTTTCTTGC+TGG - chr8_4:46962391-46962410 None:intergenic 45.0%
! TGATGATGCTTCTATGCTGG+TGG + chr8_4:46962417-46962436 Msa1328930:CDS 45.0%
ATGCTGGTGGTTACCTATGA+AGG + chr8_4:46962430-46962449 Msa1328930:CDS 45.0%
GTGATTGTGCTCTCCTTCAT+AGG - chr8_4:46962446-46962465 None:intergenic 45.0%
!! AATATAGAAAAATAAATAAA+GGG - chr8_4:46961852-46961871 None:intergenic 5.0%
!! AATATAGAAAAATAAATAAA+GGG - chr8_4:46961852-46961871 None:intergenic 5.0%
!! TGTAGGGTTTGTGATGGTGG+TGG - chr8_4:46961419-46961438 None:intergenic 50.0%
!! GTAATCTGAAAAGCACCCGC+CGG - chr8_4:46961644-46961663 None:intergenic 50.0%
!! TGTAGGGTTTGTGATGGTGG+TGG - chr8_4:46961419-46961438 None:intergenic 50.0%
!! GTAATCTGAAAAGCACCCGC+CGG - chr8_4:46961644-46961663 None:intergenic 50.0%
TGTTGCCACAACAATGGCCG+TGG + chr8_4:46961061-46961080 Msa1328930:exon 55.0%
GTAGCCTGTCATGAGCTCCA+CGG - chr8_4:46961081-46961100 None:intergenic 55.0%
GCTGTCCAAGAAGCAGCTTC+TGG + chr8_4:46961140-46961159 Msa1328930:CDS 55.0%
!! GGTGGTGGTGGTTGTGGTAA+AGG - chr8_4:46961404-46961423 None:intergenic 55.0%
!! TGTGATGGTGGTGGTGGTTG+TGG - chr8_4:46961410-46961429 None:intergenic 55.0%
!! AGGGTTTGTGATGGTGGTGG+TGG - chr8_4:46961416-46961435 None:intergenic 55.0%
TGTTGCCACAACAATGGCCG+TGG + chr8_4:46961061-46961080 Msa1328930:exon 55.0%
GTAGCCTGTCATGAGCTCCA+CGG - chr8_4:46961081-46961100 None:intergenic 55.0%
GCTGTCCAAGAAGCAGCTTC+TGG + chr8_4:46961140-46961159 Msa1328930:CDS 55.0%
!! GGTGGTGGTGGTTGTGGTAA+AGG - chr8_4:46961404-46961423 None:intergenic 55.0%
!! TGTGATGGTGGTGGTGGTTG+TGG - chr8_4:46961410-46961429 None:intergenic 55.0%
!! AGGGTTTGTGATGGTGGTGG+TGG - chr8_4:46961416-46961435 None:intergenic 55.0%
GAGCTCCACGGCCATTGTTG+TGG - chr8_4:46961069-46961088 None:intergenic 60.0%
ATGGCCGTGGAGCTCATGAC+AGG + chr8_4:46961074-46961093 Msa1328930:CDS 60.0%
ACAACCGTCGATGTCGTCGC+CGG + chr8_4:46961622-46961641 Msa1328930:CDS 60.0%
GAGCTCCACGGCCATTGTTG+TGG - chr8_4:46961069-46961088 None:intergenic 60.0%
ATGGCCGTGGAGCTCATGAC+AGG + chr8_4:46961074-46961093 Msa1328930:CDS 60.0%
ACAACCGTCGATGTCGTCGC+CGG + chr8_4:46961622-46961641 Msa1328930:CDS 60.0%
ACCGTCGATGTCGTCGCCGG+CGG + chr8_4:46961625-46961644 Msa1328930:CDS 70.0%
ACCGTCGATGTCGTCGCCGG+CGG + chr8_4:46961625-46961644 Msa1328930:CDS 70.0%
CCCGCCGGCGACGACATCGA+CGG - chr8_4:46961629-46961648 None:intergenic 75.0%
CCGTCGATGTCGTCGCCGGC+GGG + chr8_4:46961626-46961645 Msa1328930:CDS 75.0%
CCCGCCGGCGACGACATCGA+CGG - chr8_4:46961629-46961648 None:intergenic 75.0%
CCGTCGATGTCGTCGCCGGC+GGG + chr8_4:46961626-46961645 Msa1328930:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 46960974 46962707 46960974 ID=Msa1328930;Name=Msa1328930
chr8_4 mRNA 46960974 46962707 46960974 ID=Msa1328930-mRNA-1;Parent=Msa1328930;Name=Msa1328930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=100|1|1|1|0.5|0.66|3|194|337
chr8_4 exon 46960974 46961798 46960974 ID=Msa1328930-mRNA-1:exon:13449;Parent=Msa1328930-mRNA-1
chr8_4 exon 46961932 46962060 46961932 ID=Msa1328930-mRNA-1:exon:13450;Parent=Msa1328930-mRNA-1
chr8_4 exon 46962354 46962707 46962354 ID=Msa1328930-mRNA-1:exon:13451;Parent=Msa1328930-mRNA-1
chr8_4 five_prime_UTR 46960974 46961073 46960974 ID=Msa1328930-mRNA-1:five_prime_utr;Parent=Msa1328930-mRNA-1
chr8_4 CDS 46961074 46961798 46961074 ID=Msa1328930-mRNA-1:cds;Parent=Msa1328930-mRNA-1
chr8_4 CDS 46961932 46962060 46961932 ID=Msa1328930-mRNA-1:cds;Parent=Msa1328930-mRNA-1
chr8_4 CDS 46962354 46962513 46962354 ID=Msa1328930-mRNA-1:cds;Parent=Msa1328930-mRNA-1
chr8_4 three_prime_UTR 46962514 46962707 46962514 ID=Msa1328930-mRNA-1:three_prime_utr;Parent=Msa1328930-mRNA-1
Gene Sequence

>Msa1328930

ATGGCCGTGGAGCTCATGACAGGCTACAACAGAAACCAAGCTTTCACAACCAAAGCAGAAGAAAATGCTGTCCAAGAAGCAGCTTCTGGTTTAGAAAGTGTTGAAAAACTCATAAAACTTCTCTCAGAAGCACGTCACAAATACCAACCTTCTTCATCTTCTTCCTCTTCCTTTTCACCTTCAAACCCTAACAACAATAACAACAACGCTACTATGGATATAGAAAGAGATTGCAAAGCTGTTGCAGACATAGCTGTTTCCAAGTTCAAACGTGTTATTTCACTGCTTGAAAAAACAAGAACTGGTCATGCTCGTTTCAGAAAAGCACCTTTACCACAACCACCACCACCATCACAAACCCTACAAGTTCAACCTTCTGAACCAATGATTTTCAACGCTACACCTTTGCAACAGATTCCACCAACTGTTTCTACTACCCTTCACCGTCCTATAATCAAGAGAAATGATTCTTCTAAAACTCTTAATTTTTCATACTCTTCTGCTGGTAATTCTTTCATTTCTTCACTCACTGGCGACGACAACAACAAACAACCGTCGATGTCGTCGCCGGCGGGTGCTTTTCAGATTACAAATCTGTCTCATGTTTCATCTGTTGGTAAGCCACCACTCTCTTCTTCTTCATTGAAAAGGAAGTGTAGCTCTGAAACTTTGGGTTCTGGAAAGTGTGGTAGTTCTTCTAGCCGTTGTCATTGTTCCAAAAAAAGTAGGAAAATGAGATTGAAGAGGGTTGTTAGGGTTCCTGCAATTAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGTCAGAAACCTATTAAAGGTTCACCTCATCCAAGGGGATACTACAAGTGCAGTAGTGTGAGAGGGTGTCCAGCAAGAAAGCATGTAGAGAGAGCTCTTGATGATGCTTCTATGCTGGTGGTTACCTATGAAGGAGAGCACAATCACTCTCTTTCTGCAGCTGATGCTAGCAATCTTATTTTAGAATCATCATAG
Protein sequence

>Msa1328930

MAVELMTGYNRNQAFTTKAEENAVQEAASGLESVEKLIKLLSEARHKYQPSSSSSSSFSPSNPNNNNNNATMDIERDCKAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQPPPPSQTLQVQPSEPMIFNATPLQQIPPTVSTTLHRPIIKRNDSSKTLNFSYSSAGNSFISSLTGDDNNKQPSMSSPAGAFQITNLSHVSSVGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADASNLILESS*