AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296520 MtrunA17_Chr4g0053281 98.521 338 4 1 1 337 1 338 0.0 680
Msa1296520 MtrunA17_Chr5g0401821 57.817 339 73 9 1 337 1 271 1.55e-113 330
Msa1296520 MtrunA17_Chr1g0147881 40.204 393 126 15 1 337 1 340 9.65e-70 221
Msa1296520 MtrunA17_Chr4g0071521 45.201 323 144 11 20 333 15 313 2.13e-67 214
Msa1296520 MtrunA17_Chr1g0184691 52.198 182 65 4 151 323 183 351 5.18e-48 165
Msa1296520 MtrunA17_Chr3g0139021 50.311 161 73 2 171 331 227 380 2.90e-43 154
Msa1296520 MtrunA17_Chr7g0228941 62.921 89 32 1 246 334 33 120 4.46e-34 121
Msa1296520 MtrunA17_Chr2g0284321 55.172 87 37 2 239 324 9 94 3.58e-27 106
Msa1296520 MtrunA17_Chr7g0270051 55.814 86 34 1 241 322 25 110 7.84e-27 106
Msa1296520 MtrunA17_Chr2g0319961 58.242 91 31 3 240 324 50 139 1.02e-26 106
Msa1296520 MtrunA17_Chr7g0248691 60.976 82 27 2 241 322 135 211 4.37e-26 106
Msa1296520 MtrunA17_Chr2g0293481 56.250 96 36 3 232 322 230 324 9.44e-26 107
Msa1296520 MtrunA17_Chr8g0379461 53.846 91 35 3 241 324 45 135 1.09e-25 103
Msa1296520 MtrunA17_Chr8g0348311 58.537 82 29 1 241 322 136 212 1.13e-24 102
Msa1296520 MtrunA17_Chr2g0289181 57.576 66 28 0 258 323 7 72 3.23e-23 96.3
Msa1296520 MtrunA17_Chr1g0202461 52.941 85 35 1 239 323 240 319 3.33e-23 99.0
Msa1296520 MtrunA17_Chr5g0445311 45.545 101 43 2 241 330 329 428 1.22e-22 98.6
Msa1296520 MtrunA17_Chr7g0218081 35.795 176 90 5 174 327 297 471 1.91e-22 97.8
Msa1296520 MtrunA17_Chr7g0218081 54.839 62 25 3 262 322 224 283 1.55e-14 74.3
Msa1296520 MtrunA17_Chr3g0079691 36.628 172 90 5 180 333 392 562 5.31e-22 97.1
Msa1296520 MtrunA17_Chr3g0079691 50.877 57 26 2 266 322 281 335 2.49e-12 67.8
Msa1296520 MtrunA17_Chr3g0101131 49.474 95 39 2 241 327 383 476 8.64e-22 96.3
Msa1296520 MtrunA17_Chr5g0432161 51.765 85 37 2 249 330 402 485 2.07e-21 95.1
Msa1296520 MtrunA17_Chr5g0432161 50.877 57 26 2 266 322 245 299 7.44e-13 69.3
Msa1296520 MtrunA17_Chr7g0249311 51.136 88 39 2 249 333 373 459 2.79e-21 94.7
Msa1296520 MtrunA17_Chr7g0249311 50.000 58 27 2 266 323 180 235 7.10e-12 66.6
Msa1296520 MtrunA17_Chr4g0004911 50.633 79 35 2 249 324 317 394 2.81e-21 94.4
Msa1296520 MtrunA17_Chr4g0004911 52.632 57 26 1 266 322 185 240 2.18e-14 73.9
Msa1296520 MtrunA17_Chr7g0243891 44.554 101 52 2 230 330 342 438 3.19e-21 94.4
Msa1296520 MtrunA17_Chr7g0243891 52.632 57 25 2 266 322 217 271 1.13e-12 68.9
Msa1296520 MtrunA17_Chr3g0106491 40.517 116 53 3 230 330 315 429 3.55e-21 94.4
Msa1296520 MtrunA17_Chr3g0106491 50.000 66 31 2 266 331 199 262 4.00e-14 73.2
Msa1296520 MtrunA17_Chr7g0249301 47.423 97 43 3 238 327 258 353 5.06e-21 92.8
Msa1296520 MtrunA17_Chr7g0249301 51.724 58 26 2 266 323 63 118 2.34e-12 67.4
Msa1296520 MtrunA17_Chr7g0263531 48.000 75 38 1 261 335 357 430 1.63e-20 92.0
Msa1296520 MtrunA17_Chr7g0263531 55.556 63 25 3 261 322 184 244 3.60e-15 76.3
Msa1296520 MtrunA17_Chr5g0418191 51.220 82 36 2 249 327 301 381 2.53e-20 91.3
Msa1296520 MtrunA17_Chr5g0418191 53.846 65 27 3 261 324 146 208 2.59e-14 73.6
Msa1296520 MtrunA17_Chr3g0136961 56.897 58 25 0 266 323 139 196 7.93e-20 88.2
Msa1296520 MtrunA17_Chr4g0001361 45.455 88 45 1 238 322 132 219 8.05e-20 88.6
Msa1296520 MtrunA17_Chr4g0051181 40.952 105 43 1 239 324 198 302 8.55e-20 90.1
Msa1296520 MtrunA17_Chr4g0074001 59.649 57 22 1 266 322 360 415 1.73e-19 89.4
Msa1296520 MtrunA17_Chr4g0042831 50.000 82 37 2 249 327 259 339 1.92e-19 88.2
Msa1296520 MtrunA17_Chr1g0150801 50.704 71 34 1 252 322 89 158 3.11e-19 83.6
Msa1296520 MtrunA17_Chr8g0387501 61.404 57 22 0 266 322 130 186 3.64e-19 85.9
Msa1296520 MtrunA17_Chr3g0099641 50.685 73 36 0 252 324 238 310 3.94e-19 87.8
Msa1296520 MtrunA17_Chr7g0270191 50.000 74 36 1 249 322 129 201 4.21e-19 86.3
Msa1296520 MtrunA17_Chr2g0288871 50.000 76 38 0 249 324 289 364 4.33e-19 88.2
Msa1296520 MtrunA17_Chr8g0335811 44.578 83 42 2 244 323 130 211 4.93e-19 84.7
Msa1296520 MtrunA17_Chr4g0060271 57.627 59 25 0 266 324 256 314 1.75e-18 86.3
Msa1296520 MtrunA17_Chr7g0270831 54.839 62 28 0 266 327 217 278 2.03e-18 85.9
Msa1296520 MtrunA17_Chr2g0322391 47.368 76 40 0 249 324 333 408 2.64e-18 85.9
Msa1296520 MtrunA17_Chr8g0383251 55.556 63 27 1 262 324 105 166 2.90e-18 81.3
Msa1296520 MtrunA17_Chr1g0150281 49.231 65 33 0 266 330 141 205 2.99e-18 83.6
Msa1296520 MtrunA17_Chr7g0216891 54.839 62 28 0 266 327 220 281 3.38e-18 85.5
Msa1296520 MtrunA17_Chr4g0075201 48.684 76 39 0 249 324 251 326 3.98e-18 85.1
Msa1296520 MtrunA17_Chr2g0333851 55.000 60 27 0 263 322 167 226 6.28e-18 83.2
Msa1296520 MtrunA17_Chr2g0302391 54.839 62 28 0 266 327 212 273 6.44e-18 84.3
Msa1296520 MtrunA17_Chr4g0025061 54.839 62 28 0 266 327 361 422 1.01e-17 84.3
Msa1296520 MtrunA17_Chr1g0194481 45.238 84 43 2 241 322 132 214 4.58e-17 80.9
Msa1296520 MtrunA17_Chr3g0129321 44.186 86 44 2 240 322 90 174 5.89e-17 78.2
Msa1296520 MtrunA17_Chr8g0383351 45.455 77 37 2 251 323 142 217 8.43e-17 78.6
Msa1296520 MtrunA17_Chr4g0051881 45.070 71 38 1 252 322 165 234 1.01e-16 80.1
Msa1296520 MtrunA17_Chr2g0294231 44.706 85 46 1 248 332 186 269 1.26e-16 80.1
Msa1296520 MtrunA17_Chr1g0150271 50.000 62 31 0 263 324 99 160 1.30e-16 78.6
Msa1296520 MtrunA17_Chr5g0443131 47.887 71 36 1 252 322 144 213 1.45e-16 79.3
Msa1296520 MtrunA17_Chr7g0238921 43.478 92 47 3 232 322 93 180 1.87e-16 79.0
Msa1296520 MtrunA17_Chr5g0447701 53.448 58 26 1 266 323 253 309 1.97e-16 79.7
Msa1296520 MtrunA17_Chr3g0129361 46.053 76 37 2 251 323 127 201 2.16e-16 77.0
Msa1296520 MtrunA17_Chr3g0126391 40.187 107 50 6 234 333 100 199 2.94e-16 78.6
Msa1296520 MtrunA17_Chr7g0248721 38.835 103 50 4 231 322 96 196 7.89e-16 75.5
Msa1296520 MtrunA17_Chr4g0025051 51.613 62 30 0 266 327 336 397 1.27e-15 77.8
Msa1296520 MtrunA17_Chr5g0418781 38.947 95 55 2 241 333 98 191 1.96e-15 75.5
Msa1296520 MtrunA17_Chr7g0224801 46.875 64 33 1 261 324 89 151 3.92e-15 72.4
Msa1296520 MtrunA17_Chr1g0188941 47.619 63 32 1 262 324 48 109 7.70e-15 70.1
Msa1296520 MtrunA17_Chr4g0068541 44.595 74 40 1 249 322 192 264 8.86e-15 74.7
Msa1296520 MtrunA17_Chr6g0485431 36.735 98 49 3 239 324 117 213 5.20e-14 72.0
Msa1296520 MtrunA17_Chr1g0189391 39.623 106 48 5 230 323 54 155 8.61e-14 71.2
Msa1296520 MtrunA17_Chr7g0275531 48.438 64 31 1 266 327 119 182 2.07e-13 70.1
Msa1296520 MtrunA17_Chr5g0402931 53.448 58 24 2 265 322 123 177 3.00e-13 67.4
Msa1296520 MtrunA17_Chr8g0347251 42.529 87 46 3 237 320 108 193 7.99e-13 68.6
Msa1296520 MtrunA17_Chr8g0387981 47.368 57 28 1 266 320 133 189 9.19e-13 68.6
Msa1296520 MtrunA17_Chr8g0386241 39.189 74 43 2 262 334 100 172 2.80e-12 64.7
Msa1296520 MtrunA17_Chr4g0024391 45.161 62 34 0 266 327 230 291 3.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296520 AT2G23320.1 51.404 356 115 15 1 337 1 317 9.06e-93 279
Msa1296520 AT4G24240.1 45.503 378 114 14 1 324 1 340 1.97e-85 262
Msa1296520 AT4G31550.1 47.429 350 117 16 1 326 1 307 5.53e-81 249
Msa1296520 AT4G31550.2 46.857 350 118 16 1 326 1 306 1.28e-79 246
Msa1296520 AT2G24570.1 44.242 330 115 13 20 322 13 300 9.13e-71 223
Msa1296520 AT2G23320.2 46.488 299 107 14 1 285 1 260 8.50e-60 193
Msa1296520 AT5G28650.1 42.568 296 99 10 85 323 39 320 1.04e-56 187
Msa1296520 AT3G04670.1 42.667 300 93 13 85 323 39 320 1.40e-56 187
Msa1296520 AT4G24240.2 40.413 339 110 14 1 285 1 301 4.54e-54 179
Msa1296520 AT2G30590.1 76.147 109 22 3 216 322 264 370 2.49e-52 177
Msa1296520 AT4G31550.3 42.395 309 110 16 1 285 1 265 2.01e-50 169
Msa1296520 AT1G29280.1 57.609 92 33 2 237 322 40 131 6.87e-30 115
Msa1296520 AT3G04670.2 36.466 266 90 13 85 289 39 286 6.26e-29 113
Msa1296520 AT2G34830.2 56.322 87 33 1 241 322 195 281 8.03e-26 107
Msa1296520 AT2G34830.1 56.322 87 33 1 241 322 186 272 8.46e-26 107
Msa1296520 AT3G58710.1 52.475 101 32 2 240 329 40 135 8.81e-26 104
Msa1296520 AT4G01250.1 50.000 108 45 2 215 322 87 185 1.22e-25 104
Msa1296520 AT1G30650.1 56.322 87 33 1 241 322 188 274 1.27e-24 103
Msa1296520 AT3G58710.2 52.632 95 39 2 241 329 40 134 1.40e-24 101
Msa1296520 AT2G38470.1 52.941 85 36 2 249 330 343 426 2.78e-23 100
Msa1296520 AT2G38470.1 52.632 57 25 2 266 322 185 239 2.90e-13 70.9
Msa1296520 AT2G04880.2 53.425 73 33 1 252 324 270 341 3.15e-21 94.4
Msa1296520 AT2G04880.1 53.425 73 33 1 252 324 294 365 3.58e-21 94.4
Msa1296520 AT5G26170.1 54.167 72 32 1 252 323 100 170 3.86e-21 89.4
Msa1296520 AT5G52830.1 50.000 82 37 1 241 322 145 222 9.39e-21 92.0
Msa1296520 AT4G23550.1 53.247 77 32 1 248 324 127 199 1.28e-20 90.9
Msa1296520 AT4G26640.5 50.000 82 40 1 249 330 189 269 1.67e-20 91.7
Msa1296520 AT4G26640.6 50.000 82 40 1 249 330 189 269 1.67e-20 91.7
Msa1296520 AT4G26640.4 50.000 82 40 1 249 330 189 269 1.67e-20 91.7
Msa1296520 AT4G26640.3 50.000 82 40 1 249 330 189 269 1.67e-20 91.7
Msa1296520 AT5G56270.1 51.220 82 36 2 249 327 468 548 1.71e-20 92.8
Msa1296520 AT5G56270.1 49.123 57 27 2 266 322 274 328 5.94e-11 63.9
Msa1296520 AT4G26640.7 50.000 82 40 1 249 330 325 405 2.46e-20 92.0
Msa1296520 AT4G26640.1 50.000 82 40 1 249 330 293 373 2.53e-20 92.0
Msa1296520 AT4G26640.2 50.000 82 40 1 249 330 365 445 2.67e-20 92.0
Msa1296520 AT1G13960.2 53.165 79 33 2 249 324 237 314 2.89e-20 90.9
Msa1296520 AT1G13960.2 56.452 62 24 3 262 322 72 131 1.76e-15 77.0
Msa1296520 AT1G13960.1 53.165 79 33 2 249 324 390 467 5.61e-20 91.3
Msa1296520 AT1G13960.1 55.556 63 25 3 261 322 224 284 2.15e-15 77.4
Msa1296520 AT2G03340.1 49.438 89 41 2 249 334 396 483 8.21e-20 90.5
Msa1296520 AT2G03340.1 51.389 72 32 3 261 331 245 314 8.63e-16 78.6
Msa1296520 AT5G07100.2 43.678 87 45 2 241 324 114 199 1.10e-19 86.7
Msa1296520 AT5G07100.2 49.123 57 28 1 266 322 25 80 2.67e-12 65.9
Msa1296520 AT5G07100.4 43.678 87 45 2 241 324 114 199 1.10e-19 86.7
Msa1296520 AT5G07100.4 49.123 57 28 1 266 322 25 80 2.67e-12 65.9
Msa1296520 AT5G07100.5 43.678 87 45 2 241 324 114 199 1.10e-19 86.7
Msa1296520 AT5G07100.5 49.123 57 28 1 266 322 25 80 2.67e-12 65.9
Msa1296520 AT5G07100.3 43.678 87 45 2 241 324 114 199 1.10e-19 86.7
Msa1296520 AT5G07100.3 49.123 57 28 1 266 322 25 80 2.67e-12 65.9
Msa1296520 AT4G30935.1 55.932 59 25 1 266 324 332 389 1.11e-19 90.1
Msa1296520 AT5G07100.1 42.574 101 53 3 225 324 196 292 1.51e-19 88.2
Msa1296520 AT5G07100.1 49.123 57 28 1 266 322 118 173 3.40e-12 66.6
Msa1296520 AT3G01080.2 51.899 79 34 2 249 324 325 402 2.17e-19 89.0
Msa1296520 AT3G01080.2 54.839 62 25 3 262 322 201 260 1.43e-14 74.7
Msa1296520 AT4G04450.2 41.414 99 55 1 229 324 159 257 2.53e-19 89.0
Msa1296520 AT3G01080.1 51.899 79 34 2 249 324 287 364 2.64e-19 88.6
Msa1296520 AT3G01080.1 54.839 62 25 3 262 322 163 222 1.85e-14 74.3
Msa1296520 AT1G68150.1 59.322 59 24 0 266 324 236 294 5.06e-19 87.4
Msa1296520 AT4G04450.1 41.414 99 55 1 229 324 253 351 5.10e-19 88.2
Msa1296520 AT5G64810.1 40.000 125 64 4 219 334 57 179 5.48e-19 84.0
Msa1296520 AT1G62300.1 50.000 76 38 0 249 324 296 371 8.04e-19 87.8
Msa1296520 AT5G15130.2 59.322 59 24 0 266 324 186 244 1.00e-18 87.4
Msa1296520 AT2G44745.1 43.902 82 42 2 244 322 121 201 1.05e-18 84.0
Msa1296520 AT4G39410.1 45.455 88 44 2 239 323 194 280 1.14e-18 85.5
Msa1296520 AT5G15130.1 59.322 59 24 0 266 324 228 286 1.17e-18 87.4
Msa1296520 AT4G22070.4 50.000 76 38 0 249 324 281 356 1.51e-18 87.0
Msa1296520 AT4G22070.3 50.000 76 38 0 249 324 281 356 1.51e-18 87.0
Msa1296520 AT4G22070.2 50.000 76 38 0 249 324 281 356 1.51e-18 87.0
Msa1296520 AT4G22070.1 50.000 76 38 0 249 324 281 356 1.51e-18 87.0
Msa1296520 AT4G26440.1 45.652 92 49 1 236 327 343 433 2.02e-18 86.7
Msa1296520 AT4G26440.1 50.820 61 27 3 264 323 176 234 1.99e-11 65.5
Msa1296520 AT1G29860.1 42.553 94 53 1 229 322 100 192 2.57e-18 84.0
Msa1296520 AT5G45050.2 42.017 119 64 2 205 322 1095 1209 4.47e-18 85.9
Msa1296520 AT5G45050.4 42.017 119 64 2 205 322 984 1098 4.86e-18 85.9
Msa1296520 AT5G45050.1 42.017 119 64 2 205 322 1123 1237 4.88e-18 85.9
Msa1296520 AT4G18170.1 41.667 84 48 1 241 324 148 230 8.44e-18 83.2
Msa1296520 AT5G45260.1 48.235 85 36 2 240 322 1189 1267 8.92e-18 85.1
Msa1296520 AT1G80840.1 48.571 70 35 1 263 331 144 213 9.74e-18 82.8
Msa1296520 AT5G49520.1 48.649 74 37 1 249 322 205 277 1.20e-17 83.6
Msa1296520 AT1G55600.1 48.052 77 36 2 249 322 288 363 1.50e-17 84.0
Msa1296520 AT4G01720.1 46.341 82 38 1 243 324 223 298 2.48e-17 83.2
Msa1296520 AT2G37260.3 54.688 64 28 1 261 324 265 327 3.56e-17 81.6
Msa1296520 AT2G37260.3 53.448 58 25 2 266 323 86 141 1.78e-13 70.9
Msa1296520 AT2G37260.2 54.688 64 28 1 261 324 263 325 3.71e-17 81.6
Msa1296520 AT2G37260.2 53.448 58 25 2 266 323 84 139 1.83e-13 70.9
Msa1296520 AT2G37260.1 57.627 59 24 1 266 324 350 407 4.06e-17 82.4
Msa1296520 AT2G37260.1 53.448 58 25 2 266 323 166 221 1.67e-13 71.2
Msa1296520 AT4G31800.2 45.205 73 40 0 250 322 96 168 4.91e-17 79.7
Msa1296520 AT3G62340.1 46.914 81 42 1 242 322 95 174 6.01e-17 80.1
Msa1296520 AT4G31800.1 45.205 73 40 0 250 322 161 233 8.18e-17 80.1
Msa1296520 AT2G47260.1 45.238 84 44 2 239 322 149 230 9.36e-17 80.5
Msa1296520 AT2G40740.1 39.815 108 59 3 216 320 126 230 1.14e-16 79.7
Msa1296520 AT2G40740.3 39.815 108 59 3 216 320 135 239 1.50e-16 79.3
Msa1296520 AT5G41570.1 41.860 86 46 2 240 322 70 154 1.54e-16 77.0
Msa1296520 AT1G69310.4 43.902 82 42 2 244 322 123 203 2.54e-16 78.6
Msa1296520 AT1G69310.2 43.902 82 42 2 244 322 123 203 2.54e-16 78.6
Msa1296520 AT1G69310.1 43.902 82 42 2 244 322 123 203 2.54e-16 78.6
Msa1296520 AT1G18860.1 55.932 59 26 0 266 324 240 298 2.63e-16 80.1
Msa1296520 AT2G30250.1 44.737 76 41 1 252 327 315 389 2.92e-16 79.3
Msa1296520 AT3G01970.1 47.692 65 33 1 261 325 61 124 5.10e-16 74.7
Msa1296520 AT5G46350.1 43.836 73 40 1 252 324 170 241 8.95e-16 77.4
Msa1296520 AT2G25000.2 51.724 58 28 0 266 323 104 161 9.72e-16 75.9
Msa1296520 AT2G25000.4 51.724 58 28 0 266 323 104 161 9.72e-16 75.9
Msa1296520 AT2G25000.3 51.724 58 28 0 266 323 126 183 1.68e-15 75.5
Msa1296520 AT5G43290.1 56.140 57 24 1 266 322 115 170 2.31e-15 75.5
Msa1296520 AT2G25000.1 51.724 58 28 0 266 323 147 204 2.36e-15 75.5
Msa1296520 AT2G46130.1 50.000 62 30 1 261 322 26 86 2.99e-15 71.2
Msa1296520 AT1G64000.1 49.180 61 30 1 262 322 111 170 3.63e-15 73.6
Msa1296520 AT2G21900.1 47.297 74 35 2 266 336 110 182 4.95e-15 73.2
Msa1296520 AT3G01080.3 54.839 62 25 3 262 322 201 260 8.11e-15 74.7
Msa1296520 AT5G13080.1 48.387 62 31 1 261 322 63 123 1.39e-14 70.5
Msa1296520 AT4G23810.1 38.583 127 68 4 202 320 91 215 1.24e-13 71.2
Msa1296520 AT1G69810.1 50.000 60 29 1 266 324 204 263 7.86e-13 69.3
Msa1296520 AT1G69810.2 50.000 60 29 1 266 324 146 205 9.13e-13 68.6
Msa1296520 AT4G11070.2 37.288 118 67 3 206 320 53 166 2.59e-12 66.6
Msa1296520 AT4G11070.1 37.288 118 67 3 206 320 85 198 2.99e-12 67.0
Msa1296520 AT1G69310.3 41.463 82 40 3 244 322 123 199 4.27e-12 66.2
Msa1296520 AT4G12020.6 49.123 57 27 2 266 322 469 523 7.93e-12 67.0
Msa1296520 AT4G12020.8 49.123 57 27 2 266 322 469 523 7.93e-12 67.0
Msa1296520 AT4G12020.1 49.123 57 27 2 266 322 469 523 8.24e-12 67.0
Msa1296520 AT4G12020.9 49.123 57 27 2 266 322 469 523 8.24e-12 67.0
Msa1296520 AT4G12020.10 49.123 57 27 2 266 322 469 523 8.59e-12 67.0
Msa1296520 AT4G12020.7 49.123 57 27 2 266 322 469 523 8.62e-12 67.0
Msa1296520 AT4G12020.3 49.123 57 27 2 266 322 469 523 8.67e-12 67.0
Msa1296520 AT4G12020.2 49.123 57 27 2 266 322 469 523 9.00e-12 67.0
Msa1296520 AT4G12020.4 49.123 57 27 2 266 322 469 523 9.33e-12 67.0
Msa1296520 AT4G12020.5 49.123 57 27 2 266 322 402 456 9.80e-12 66.6
Msa1296520 AT4G12020.11 49.123 57 27 2 266 322 469 523 1.16e-11 66.6
Msa1296520 AT5G24110.1 46.032 63 32 1 266 326 114 176 2.00e-11 64.3
Msa1296520 AT2G46130.2 46.774 62 28 2 261 322 26 82 3.67e-11 59.7

Find 85 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCATTTCTCTTGATTAT+AGG 0.225392 8_3:+56097955 None:intergenic
TACTCAATGTTGAAGGAAAT+TGG 0.248677 8_3:-56096872 Msa1296520:three_prime_UTR
CTAAACCAGAAGCTGCTTCT+TGG 0.260761 8_3:+56098331 None:intergenic
TTCCACCAGATGATTATTCT+TGG 0.275431 8_3:-56097482 Msa1296520:CDS
CAATAACAACAACGCTACTA+TGG 0.291413 8_3:-56098208 Msa1296520:CDS
CTCTCTACATGCTTTCTTGC+TGG 0.296000 8_3:+56097070 None:intergenic
AGTAAATTGTTGGTTGGTTA+TGG 0.298135 8_3:-56096916 Msa1296520:three_prime_UTR
GCGTTGTTGTTATTGTTGTT+AGG 0.306679 8_3:+56098216 None:intergenic
GGATGAGGTGAACCTTTAAT+AGG 0.307884 8_3:+56097441 None:intergenic
GATTATTCTTGGAGAAAATA+TGG 0.308918 8_3:-56097471 Msa1296520:CDS
TATGGTCAGAAACCTATTAA+AGG 0.337402 8_3:-56097453 Msa1296520:CDS
GCTGTCCAAGAAGCAGCTTC+TGG 0.338762 8_3:-56098336 Msa1296520:CDS
TGTGATGGTGGTGGTGGTTG+TGG 0.342656 8_3:+56098069 None:intergenic
AATAGTCAAGATGGTGGATT+TGG 0.345890 8_3:-56096816 Msa1296520:three_prime_UTR
GAAGTGTAGCTCTGAGACTT+TGG 0.346765 8_3:-56097752 Msa1296520:CDS
GGTGGTGGTGGTTGTGGTAA+AGG 0.363573 8_3:+56098075 None:intergenic
CTGCTTTGGTTGTGAAAGCT+TGG 0.372478 8_3:+56098367 None:intergenic
CGTTGTTGTTATTGTTGTTA+GGG 0.373125 8_3:+56098217 None:intergenic
GTTCAGAAGGTTGAACTTGT+AGG 0.380241 8_3:+56098043 None:intergenic
GCCATCTTCAAGCTAATTGC+AGG 0.382493 8_3:+56097510 None:intergenic
TCAAAATGGTAGTAAATTGT+TGG 0.395296 8_3:-56096926 Msa1296520:three_prime_UTR
TAGCTCTGAGACTTTGGGTT+CGG 0.397732 8_3:-56097746 Msa1296520:CDS
CTGTCTCATGTTTCATCTGT+TGG 0.405470 8_3:-56097808 Msa1296520:CDS
AGCTCTGAGACTTTGGGTTC+GGG 0.408914 8_3:-56097745 Msa1296520:CDS
GGTGTAGCGTTGAAAATCAT+TGG 0.411117 8_3:+56098021 None:intergenic
TGAAATAACACGTTTGAACT+TGG 0.416358 8_3:+56098143 None:intergenic
AAGTGTAGCTCTGAGACTTT+GGG 0.418573 8_3:-56097751 Msa1296520:CDS
TCTCTTCTTCTTCATTGAAA+AGG 0.427957 8_3:-56097774 Msa1296520:CDS
AGGGTTTGTGATGGTGGTGG+TGG 0.429408 8_3:+56098063 None:intergenic
AAGATGGTGGATTTGGTAAA+CGG 0.429455 8_3:-56096809 Msa1296520:three_prime_UTR
GTGATTGTGCTCTCCTTCAT+AGG 0.430732 8_3:+56097015 None:intergenic
ATAAAGAGGTAGAAAGAGAG+AGG 0.442700 8_3:+56098496 None:intergenic
TTATTGTTGTTAGGGTTTGA+AGG 0.452647 8_3:+56098225 None:intergenic
ATGAGAGAGAGAAAATAAAA+CGG 0.456826 8_3:+56098467 None:intergenic
TTTCTCCAAGAATAATCATC+TGG 0.457317 8_3:+56097477 None:intergenic
ACTTGTAGGGTTTGTGATGG+TGG 0.459002 8_3:+56098057 None:intergenic
AATGGTAGTAAATTGTTGGT+TGG 0.464968 8_3:-56096922 Msa1296520:three_prime_UTR
AATCTTCAAAGTTAAAGAAA+AGG 0.472774 8_3:-56096781 Msa1296520:three_prime_UTR
TTCAGAAGGTTGAACTTGTA+GGG 0.480010 8_3:+56098044 None:intergenic
TCTTTCATTTCTTCACTCAC+TGG 0.488282 8_3:-56097892 Msa1296520:CDS
GTTAGGGTTTGAAGGTGAAA+AGG 0.489191 8_3:+56098233 None:intergenic
TGTAGGGTTTGTGATGGTGG+TGG 0.490108 8_3:+56098060 None:intergenic
TCCTGCAATTAGCTTGAAGA+TGG 0.491700 8_3:-56097511 Msa1296520:CDS
TTGAAAATCATTGGTTCAGA+AGG 0.492153 8_3:+56098030 None:intergenic
GACCATAGAAGAAGAAGAAG+AGG 0.492450 8_3:+56098439 None:intergenic
AGGAAGAAGATGAAGAAGGT+TGG 0.495301 8_3:+56098259 None:intergenic
ATGCTGGTGGTTACCTATGA+AGG 0.503013 8_3:-56097028 Msa1296520:CDS
TGAGAGAGAGAAAATAAAAC+GGG 0.503917 8_3:+56098468 None:intergenic
TCTTGATGATGCTTCTATGC+TGG 0.510730 8_3:-56097044 Msa1296520:CDS
AAAGTTAAAGAAAAGGAAGT+GGG 0.518479 8_3:-56096774 Msa1296520:three_prime_UTR
GTTTGAAGGTGAAAAGGAAG+AGG 0.521249 8_3:+56098239 None:intergenic
ACCGTCGATGTCGTCGCCGG+CGG 0.525117 8_3:-56097851 Msa1296520:CDS
TCTTGATTATAGGACGGTGA+AGG 0.526165 8_3:+56097965 None:intergenic
TACAAGTGCAGTAGTGTGAG+AGG 0.529683 8_3:-56097097 Msa1296520:CDS
CCGTCGATGTCGTCGCCGGC+GGG 0.532795 8_3:-56097850 Msa1296520:CDS
GAAGAGGAAGAAGATGAAGA+AGG 0.545088 8_3:+56098255 None:intergenic
CAAAGTTAAAGAAAAGGAAG+TGG 0.546183 8_3:-56096775 Msa1296520:three_prime_UTR
TGTTGCCACAACAATGGCCG+TGG 0.553102 8_3:-56098415 Msa1296520:exon
GAGCTCCACGGCCATTGTTG+TGG 0.555579 8_3:+56098410 None:intergenic
TGAACTTGTAGGGTTTGTGA+TGG 0.556445 8_3:+56098054 None:intergenic
TAGGAAAATGAGATTGAAGA+GGG 0.558524 8_3:-56097544 Msa1296520:CDS
ATGGCCGTGGAGCTCATGAC+AGG 0.560730 8_3:-56098402 Msa1296520:CDS
CTCCAAGAATAATCATCTGG+TGG 0.566598 8_3:+56097480 None:intergenic
CATTTCTCTTGATTATAGGA+CGG 0.568226 8_3:+56097959 None:intergenic
GTAGGAAAATGAGATTGAAG+AGG 0.570122 8_3:-56097545 Msa1296520:CDS
TAAAGAGGTAGAAAGAGAGA+GGG 0.577710 8_3:+56098497 None:intergenic
CTTGATTATAGGACGGTGAA+GGG 0.579899 8_3:+56097966 None:intergenic
TGATGATGCTTCTATGCTGG+TGG 0.581385 8_3:-56097041 Msa1296520:CDS
ACAACCGTCGATGTCGTCGC+CGG 0.589440 8_3:-56097854 Msa1296520:CDS
AGGGTAGTAGAAACAGTTGG+TGG 0.589506 8_3:+56097985 None:intergenic
TTAAAGGTTCACCTCATCCA+AGG 0.601665 8_3:-56097437 Msa1296520:intron
ACTTTGGGTTCGGGAAAGTG+TGG 0.607664 8_3:-56097736 Msa1296520:CDS
AATTGAAAGTACCTTGGATG+AGG 0.611960 8_3:+56097426 None:intergenic
TAAAACGGGTGAGAATAAAG+AGG 0.617578 8_3:+56098482 None:intergenic
AAGTTAAAGAAAAGGAAGTG+GGG 0.619547 8_3:-56096773 Msa1296520:three_prime_UTR
TGGTCTTGTTGCCACAACAA+TGG 0.629773 8_3:-56098421 Msa1296520:exon
TTCAATGAAGAAGAAGAGAG+TGG 0.633021 8_3:+56097778 None:intergenic
CCCGCCGGCGACGACATCGA+CGG 0.645142 8_3:+56097850 None:intergenic
GTAGCCTGTCATGAGCTCCA+CGG 0.648816 8_3:+56098398 None:intergenic
AATGAAGAAGAAGAGAGTGG+TGG 0.649002 8_3:+56097781 None:intergenic
GTTGGTGGAATCTGTTGCAA+AGG 0.653955 8_3:+56098000 None:intergenic
TGAAGGGTAGTAGAAACAGT+TGG 0.656645 8_3:+56097982 None:intergenic
TCAATGTTGAAGGAAATTGG+TGG 0.676870 8_3:-56096869 Msa1296520:three_prime_UTR
ACAAGTGCAGTAGTGTGAGA+GGG 0.679618 8_3:-56097096 Msa1296520:CDS
GTAATCTGAAAAGCACCCGC+CGG 0.685924 8_3:+56097835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATAGAAAAATAAATAA+AGG + chr8_3:56097655-56097674 None:intergenic 10.0%
!! CAATATAGAAAAATAAATAA+AGG + chr8_3:56097655-56097674 None:intergenic 10.0%
!!! TTTTTTCTTATATTCTGAAT+TGG - chr8_3:56097701-56097720 Msa1296520:CDS 15.0%
!!! TTTTTCTTATATTCTGAATT+GGG - chr8_3:56097702-56097721 Msa1296520:CDS 15.0%
!! AATTCAATTACATCATAAAT+TGG - chr8_3:56097871-56097890 Msa1296520:CDS 15.0%
!! TATAATCAATCATAAACATT+TGG + chr8_3:56098045-56098064 None:intergenic 15.0%
!! AAATGTTTATGATTGATTAT+AGG - chr8_3:56098044-56098063 Msa1296520:CDS 15.0%
!!! TTTTTTCTTATATTCTGAAT+TGG - chr8_3:56097701-56097720 Msa1296520:CDS 15.0%
!!! TTTTTCTTATATTCTGAATT+GGG - chr8_3:56097702-56097721 Msa1296520:CDS 15.0%
!! AATTCAATTACATCATAAAT+TGG - chr8_3:56097871-56097890 Msa1296520:CDS 15.0%
!! TATAATCAATCATAAACATT+TGG + chr8_3:56098045-56098064 None:intergenic 15.0%
!! AAATGTTTATGATTGATTAT+AGG - chr8_3:56098044-56098063 Msa1296520:CDS 15.0%
!!! AGACTATTCAAAATTTTTAG+TGG - chr8_3:56098018-56098037 Msa1296520:CDS 20.0%
!!! ATTTGACTTTTTTTGTGTAA+TGG - chr8_3:56098078-56098097 Msa1296520:CDS 20.0%
!!! TTTGACTTTTTTTGTGTAAT+GGG - chr8_3:56098079-56098098 Msa1296520:CDS 20.0%
!!! TAATTTTTTGAACAATGACA+GGG - chr8_3:56098153-56098172 Msa1296520:CDS 20.0%
!!! TGTTAGTACATTTTTCAAAA+TGG - chr8_3:56098338-56098357 Msa1296520:CDS 20.0%
!! AATCTTCAAAGTTAAAGAAA+AGG - chr8_3:56098497-56098516 Msa1296520:five_prime_UTR 20.0%
!!! AGACTATTCAAAATTTTTAG+TGG - chr8_3:56098018-56098037 Msa1296520:CDS 20.0%
!!! ATTTGACTTTTTTTGTGTAA+TGG - chr8_3:56098078-56098097 Msa1296520:CDS 20.0%
!!! TTTGACTTTTTTTGTGTAAT+GGG - chr8_3:56098079-56098098 Msa1296520:CDS 20.0%
!!! TAATTTTTTGAACAATGACA+GGG - chr8_3:56098153-56098172 Msa1296520:CDS 20.0%
!!! TGTTAGTACATTTTTCAAAA+TGG - chr8_3:56098338-56098357 Msa1296520:CDS 20.0%
!! AATCTTCAAAGTTAAAGAAA+AGG - chr8_3:56098497-56098516 Msa1296520:five_prime_UTR 20.0%
! ATGAGAGAGAGAAAATAAAA+CGG + chr8_3:56096814-56096833 None:intergenic 25.0%
! GAATCATTTCTCTTGATTAT+AGG + chr8_3:56097326-56097345 None:intergenic 25.0%
!!! TTTTTTTGGAACAATGACAA+CGG + chr8_3:56097580-56097599 None:intergenic 25.0%
!!! GATTCTTTTGAAGAAAGTTT+AGG + chr8_3:56097627-56097646 None:intergenic 25.0%
! GATTATTCTTGGAGAAAATA+TGG - chr8_3:56097807-56097826 Msa1296520:CDS 25.0%
!!! TAATTGAATTGAAAGTACCT+TGG + chr8_3:56097861-56097880 None:intergenic 25.0%
! ATATAGGTTCATATACACAA+GGG + chr8_3:56097911-56097930 None:intergenic 25.0%
! TATATAGGTTCATATACACA+AGG + chr8_3:56097912-56097931 None:intergenic 25.0%
!!! ATTTTTTATGTATCTGTGCT+AGG - chr8_3:56097987-56098006 Msa1296520:CDS 25.0%
!!! GTAATTTTTTGAACAATGAC+AGG - chr8_3:56098152-56098171 Msa1296520:CDS 25.0%
!!! AATTTTTTGAACAATGACAG+GGG - chr8_3:56098154-56098173 Msa1296520:CDS 25.0%
! TCAAAATGGTAGTAAATTGT+TGG - chr8_3:56098352-56098371 Msa1296520:CDS 25.0%
! TCCTTAAAAAATAGTCAAGA+TGG - chr8_3:56098453-56098472 Msa1296520:five_prime_UTR 25.0%
!!! ACCATCTTGACTATTTTTTA+AGG + chr8_3:56098457-56098476 None:intergenic 25.0%
! TTAAAAAATAGTCAAGATGG+TGG - chr8_3:56098456-56098475 Msa1296520:five_prime_UTR 25.0%
! AAAGTTAAAGAAAAGGAAGT+GGG - chr8_3:56098504-56098523 Msa1296520:five_prime_UTR 25.0%
! ATGAGAGAGAGAAAATAAAA+CGG + chr8_3:56096814-56096833 None:intergenic 25.0%
! GAATCATTTCTCTTGATTAT+AGG + chr8_3:56097326-56097345 None:intergenic 25.0%
!!! TTTTTTTGGAACAATGACAA+CGG + chr8_3:56097580-56097599 None:intergenic 25.0%
!!! GATTCTTTTGAAGAAAGTTT+AGG + chr8_3:56097627-56097646 None:intergenic 25.0%
! GATTATTCTTGGAGAAAATA+TGG - chr8_3:56097807-56097826 Msa1296520:CDS 25.0%
!!! TAATTGAATTGAAAGTACCT+TGG + chr8_3:56097861-56097880 None:intergenic 25.0%
! ATATAGGTTCATATACACAA+GGG + chr8_3:56097911-56097930 None:intergenic 25.0%
! TATATAGGTTCATATACACA+AGG + chr8_3:56097912-56097931 None:intergenic 25.0%
!!! ATTTTTTATGTATCTGTGCT+AGG - chr8_3:56097987-56098006 Msa1296520:CDS 25.0%
!!! GTAATTTTTTGAACAATGAC+AGG - chr8_3:56098152-56098171 Msa1296520:CDS 25.0%
!!! AATTTTTTGAACAATGACAG+GGG - chr8_3:56098154-56098173 Msa1296520:CDS 25.0%
! TCAAAATGGTAGTAAATTGT+TGG - chr8_3:56098352-56098371 Msa1296520:CDS 25.0%
! TCCTTAAAAAATAGTCAAGA+TGG - chr8_3:56098453-56098472 Msa1296520:five_prime_UTR 25.0%
!!! ACCATCTTGACTATTTTTTA+AGG + chr8_3:56098457-56098476 None:intergenic 25.0%
! TTAAAAAATAGTCAAGATGG+TGG - chr8_3:56098456-56098475 Msa1296520:five_prime_UTR 25.0%
! AAAGTTAAAGAAAAGGAAGT+GGG - chr8_3:56098504-56098523 Msa1296520:five_prime_UTR 25.0%
TGAGAGAGAGAAAATAAAAC+GGG + chr8_3:56096813-56096832 None:intergenic 30.0%
! TTATTGTTGTTAGGGTTTGA+AGG + chr8_3:56097056-56097075 None:intergenic 30.0%
! CGTTGTTGTTATTGTTGTTA+GGG + chr8_3:56097064-56097083 None:intergenic 30.0%
TGAAATAACACGTTTGAACT+TGG + chr8_3:56097138-56097157 None:intergenic 30.0%
!! TTGAAAATCATTGGTTCAGA+AGG + chr8_3:56097251-56097270 None:intergenic 30.0%
CATTTCTCTTGATTATAGGA+CGG + chr8_3:56097322-56097341 None:intergenic 30.0%
! AATTTTTCATACTCTTCTGC+TGG - chr8_3:56097359-56097378 Msa1296520:intron 30.0%
TCTCTTCTTCTTCATTGAAA+AGG - chr8_3:56097504-56097523 Msa1296520:CDS 30.0%
GTTGTCATTGTTCCAAAAAA+AGG - chr8_3:56097579-56097598 Msa1296520:intron 30.0%
!!! AGCTTTCACATACCTTTTTT+TGG + chr8_3:56097594-56097613 None:intergenic 30.0%
TAGGAAAATGAGATTGAAGA+GGG - chr8_3:56097734-56097753 Msa1296520:CDS 30.0%
TTTCTCCAAGAATAATCATC+TGG + chr8_3:56097804-56097823 None:intergenic 30.0%
TATGGTCAGAAACCTATTAA+AGG - chr8_3:56097825-56097844 Msa1296520:CDS 30.0%
AATGGTAGTAAATTGTTGGT+TGG - chr8_3:56098356-56098375 Msa1296520:CDS 30.0%
! AGTAAATTGTTGGTTGGTTA+TGG - chr8_3:56098362-56098381 Msa1296520:CDS 30.0%
! GATGTTTTACTCAATGTTGA+AGG - chr8_3:56098399-56098418 Msa1296520:CDS 30.0%
TACTCAATGTTGAAGGAAAT+TGG - chr8_3:56098406-56098425 Msa1296520:exon 30.0%
CAAAGTTAAAGAAAAGGAAG+TGG - chr8_3:56098503-56098522 Msa1296520:five_prime_UTR 30.0%
AAGTTAAAGAAAAGGAAGTG+GGG - chr8_3:56098505-56098524 Msa1296520:five_prime_UTR 30.0%
TGAGAGAGAGAAAATAAAAC+GGG + chr8_3:56096813-56096832 None:intergenic 30.0%
! TTATTGTTGTTAGGGTTTGA+AGG + chr8_3:56097056-56097075 None:intergenic 30.0%
! CGTTGTTGTTATTGTTGTTA+GGG + chr8_3:56097064-56097083 None:intergenic 30.0%
TGAAATAACACGTTTGAACT+TGG + chr8_3:56097138-56097157 None:intergenic 30.0%
!! TTGAAAATCATTGGTTCAGA+AGG + chr8_3:56097251-56097270 None:intergenic 30.0%
CATTTCTCTTGATTATAGGA+CGG + chr8_3:56097322-56097341 None:intergenic 30.0%
! AATTTTTCATACTCTTCTGC+TGG - chr8_3:56097359-56097378 Msa1296520:intron 30.0%
TCTCTTCTTCTTCATTGAAA+AGG - chr8_3:56097504-56097523 Msa1296520:CDS 30.0%
GTTGTCATTGTTCCAAAAAA+AGG - chr8_3:56097579-56097598 Msa1296520:intron 30.0%
!!! AGCTTTCACATACCTTTTTT+TGG + chr8_3:56097594-56097613 None:intergenic 30.0%
TAGGAAAATGAGATTGAAGA+GGG - chr8_3:56097734-56097753 Msa1296520:CDS 30.0%
TTTCTCCAAGAATAATCATC+TGG + chr8_3:56097804-56097823 None:intergenic 30.0%
TATGGTCAGAAACCTATTAA+AGG - chr8_3:56097825-56097844 Msa1296520:CDS 30.0%
AATGGTAGTAAATTGTTGGT+TGG - chr8_3:56098356-56098375 Msa1296520:CDS 30.0%
! AGTAAATTGTTGGTTGGTTA+TGG - chr8_3:56098362-56098381 Msa1296520:CDS 30.0%
! GATGTTTTACTCAATGTTGA+AGG - chr8_3:56098399-56098418 Msa1296520:CDS 30.0%
TACTCAATGTTGAAGGAAAT+TGG - chr8_3:56098406-56098425 Msa1296520:exon 30.0%
CAAAGTTAAAGAAAAGGAAG+TGG - chr8_3:56098503-56098522 Msa1296520:five_prime_UTR 30.0%
TAAAGAGGTAGAAAGAGAGA+GGG + chr8_3:56096784-56096803 None:intergenic 35.0%
ATAAAGAGGTAGAAAGAGAG+AGG + chr8_3:56096785-56096804 None:intergenic 35.0%
TAAAACGGGTGAGAATAAAG+AGG + chr8_3:56096799-56096818 None:intergenic 35.0%
ATCCTCTTCTTCTTCTTCTA+TGG - chr8_3:56096837-56096856 Msa1296520:three_prime_UTR 35.0%
! GCGTTGTTGTTATTGTTGTT+AGG + chr8_3:56097065-56097084 None:intergenic 35.0%
CAATAACAACAACGCTACTA+TGG - chr8_3:56097070-56097089 Msa1296520:CDS 35.0%
CTGCTTGAAAAAACAAGAAC+TGG - chr8_3:56097158-56097177 Msa1296520:intron 35.0%
TTCAGAAGGTTGAACTTGTA+GGG + chr8_3:56097237-56097256 None:intergenic 35.0%
TCTTTCATTTCTTCACTCAC+TGG - chr8_3:56097386-56097405 Msa1296520:intron 35.0%
TTCAATGAAGAAGAAGAGAG+TGG + chr8_3:56097503-56097522 None:intergenic 35.0%
GTAGGAAAATGAGATTGAAG+AGG - chr8_3:56097733-56097752 Msa1296520:CDS 35.0%
TTCCACCAGATGATTATTCT+TGG - chr8_3:56097796-56097815 Msa1296520:CDS 35.0%
!! AATTGAAAGTACCTTGGATG+AGG + chr8_3:56097855-56097874 None:intergenic 35.0%
TCAATGTTGAAGGAAATTGG+TGG - chr8_3:56098409-56098428 Msa1296520:exon 35.0%
!! AATAGTCAAGATGGTGGATT+TGG - chr8_3:56098462-56098481 Msa1296520:five_prime_UTR 35.0%
!! AAGATGGTGGATTTGGTAAA+CGG - chr8_3:56098469-56098488 Msa1296520:five_prime_UTR 35.0%
TAAAGAGGTAGAAAGAGAGA+GGG + chr8_3:56096784-56096803 None:intergenic 35.0%
ATAAAGAGGTAGAAAGAGAG+AGG + chr8_3:56096785-56096804 None:intergenic 35.0%
TAAAACGGGTGAGAATAAAG+AGG + chr8_3:56096799-56096818 None:intergenic 35.0%
ATCCTCTTCTTCTTCTTCTA+TGG - chr8_3:56096837-56096856 Msa1296520:three_prime_UTR 35.0%
! GCGTTGTTGTTATTGTTGTT+AGG + chr8_3:56097065-56097084 None:intergenic 35.0%
CAATAACAACAACGCTACTA+TGG - chr8_3:56097070-56097089 Msa1296520:CDS 35.0%
CTGCTTGAAAAAACAAGAAC+TGG - chr8_3:56097158-56097177 Msa1296520:intron 35.0%
TTCAGAAGGTTGAACTTGTA+GGG + chr8_3:56097237-56097256 None:intergenic 35.0%
TCTTTCATTTCTTCACTCAC+TGG - chr8_3:56097386-56097405 Msa1296520:intron 35.0%
TTCAATGAAGAAGAAGAGAG+TGG + chr8_3:56097503-56097522 None:intergenic 35.0%
GTAGGAAAATGAGATTGAAG+AGG - chr8_3:56097733-56097752 Msa1296520:CDS 35.0%
TTCCACCAGATGATTATTCT+TGG - chr8_3:56097796-56097815 Msa1296520:CDS 35.0%
!! AATTGAAAGTACCTTGGATG+AGG + chr8_3:56097855-56097874 None:intergenic 35.0%
TCAATGTTGAAGGAAATTGG+TGG - chr8_3:56098409-56098428 Msa1296520:exon 35.0%
!! AATAGTCAAGATGGTGGATT+TGG - chr8_3:56098462-56098481 Msa1296520:five_prime_UTR 35.0%
!! AAGATGGTGGATTTGGTAAA+CGG - chr8_3:56098469-56098488 Msa1296520:five_prime_UTR 35.0%
GACCATAGAAGAAGAAGAAG+AGG + chr8_3:56096842-56096861 None:intergenic 40.0%
! GACAGCATTTTCTTCTGCTT+TGG + chr8_3:56096928-56096947 None:intergenic 40.0%
AGGAAGAAGATGAAGAAGGT+TGG + chr8_3:56097022-56097041 None:intergenic 40.0%
GAAGAGGAAGAAGATGAAGA+AGG + chr8_3:56097026-56097045 None:intergenic 40.0%
GTTTGAAGGTGAAAAGGAAG+AGG + chr8_3:56097042-56097061 None:intergenic 40.0%
GTTAGGGTTTGAAGGTGAAA+AGG + chr8_3:56097048-56097067 None:intergenic 40.0%
TGAACTTGTAGGGTTTGTGA+TGG + chr8_3:56097227-56097246 None:intergenic 40.0%
GTTCAGAAGGTTGAACTTGT+AGG + chr8_3:56097238-56097257 None:intergenic 40.0%
! GGTGTAGCGTTGAAAATCAT+TGG + chr8_3:56097260-56097279 None:intergenic 40.0%
TGAAGGGTAGTAGAAACAGT+TGG + chr8_3:56097299-56097318 None:intergenic 40.0%
CTTGATTATAGGACGGTGAA+GGG + chr8_3:56097315-56097334 None:intergenic 40.0%
TCTTGATTATAGGACGGTGA+AGG + chr8_3:56097316-56097335 None:intergenic 40.0%
CTGTCTCATGTTTCATCTGT+TGG - chr8_3:56097470-56097489 Msa1296520:CDS 40.0%
AATGAAGAAGAAGAGAGTGG+TGG + chr8_3:56097500-56097519 None:intergenic 40.0%
!! AAGTGTAGCTCTGAGACTTT+GGG - chr8_3:56097527-56097546 Msa1296520:CDS 40.0%
! TCCTGCAATTAGCTTGAAGA+TGG - chr8_3:56097767-56097786 Msa1296520:CDS 40.0%
CTCCAAGAATAATCATCTGG+TGG + chr8_3:56097801-56097820 None:intergenic 40.0%
GGATGAGGTGAACCTTTAAT+AGG + chr8_3:56097840-56097859 None:intergenic 40.0%
TTAAAGGTTCACCTCATCCA+AGG - chr8_3:56097841-56097860 Msa1296520:CDS 40.0%
AGGTTCATATACACAAGGGA+AGG + chr8_3:56097907-56097926 None:intergenic 40.0%
!! TCTTGATGATGCTTCTATGC+TGG - chr8_3:56098234-56098253 Msa1296520:CDS 40.0%
GACCATAGAAGAAGAAGAAG+AGG + chr8_3:56096842-56096861 None:intergenic 40.0%
! GACAGCATTTTCTTCTGCTT+TGG + chr8_3:56096928-56096947 None:intergenic 40.0%
AGGAAGAAGATGAAGAAGGT+TGG + chr8_3:56097022-56097041 None:intergenic 40.0%
GAAGAGGAAGAAGATGAAGA+AGG + chr8_3:56097026-56097045 None:intergenic 40.0%
GTTTGAAGGTGAAAAGGAAG+AGG + chr8_3:56097042-56097061 None:intergenic 40.0%
GTTAGGGTTTGAAGGTGAAA+AGG + chr8_3:56097048-56097067 None:intergenic 40.0%
TGAACTTGTAGGGTTTGTGA+TGG + chr8_3:56097227-56097246 None:intergenic 40.0%
GTTCAGAAGGTTGAACTTGT+AGG + chr8_3:56097238-56097257 None:intergenic 40.0%
! GGTGTAGCGTTGAAAATCAT+TGG + chr8_3:56097260-56097279 None:intergenic 40.0%
TGAAGGGTAGTAGAAACAGT+TGG + chr8_3:56097299-56097318 None:intergenic 40.0%
CTTGATTATAGGACGGTGAA+GGG + chr8_3:56097315-56097334 None:intergenic 40.0%
TCTTGATTATAGGACGGTGA+AGG + chr8_3:56097316-56097335 None:intergenic 40.0%
CTGTCTCATGTTTCATCTGT+TGG - chr8_3:56097470-56097489 Msa1296520:CDS 40.0%
AATGAAGAAGAAGAGAGTGG+TGG + chr8_3:56097500-56097519 None:intergenic 40.0%
!! AAGTGTAGCTCTGAGACTTT+GGG - chr8_3:56097527-56097546 Msa1296520:CDS 40.0%
! TCCTGCAATTAGCTTGAAGA+TGG - chr8_3:56097767-56097786 Msa1296520:CDS 40.0%
CTCCAAGAATAATCATCTGG+TGG + chr8_3:56097801-56097820 None:intergenic 40.0%
GGATGAGGTGAACCTTTAAT+AGG + chr8_3:56097840-56097859 None:intergenic 40.0%
TTAAAGGTTCACCTCATCCA+AGG - chr8_3:56097841-56097860 Msa1296520:CDS 40.0%
AGGTTCATATACACAAGGGA+AGG + chr8_3:56097907-56097926 None:intergenic 40.0%
!! TCTTGATGATGCTTCTATGC+TGG - chr8_3:56098234-56098253 Msa1296520:CDS 40.0%
!! TGGTCTTGTTGCCACAACAA+TGG - chr8_3:56096857-56096876 Msa1296520:three_prime_UTR 45.0%
CTGCTTTGGTTGTGAAAGCT+TGG + chr8_3:56096914-56096933 None:intergenic 45.0%
CTAAACCAGAAGCTGCTTCT+TGG + chr8_3:56096950-56096969 None:intergenic 45.0%
ACTTGTAGGGTTTGTGATGG+TGG + chr8_3:56097224-56097243 None:intergenic 45.0%
! GTTGGTGGAATCTGTTGCAA+AGG + chr8_3:56097281-56097300 None:intergenic 45.0%
AGGGTAGTAGAAACAGTTGG+TGG + chr8_3:56097296-56097315 None:intergenic 45.0%
!! GAAGTGTAGCTCTGAGACTT+TGG - chr8_3:56097526-56097545 Msa1296520:CDS 45.0%
!! TAGCTCTGAGACTTTGGGTT+CGG - chr8_3:56097532-56097551 Msa1296520:CDS 45.0%
! CTGAATTGGGTTGTTGCAGT+AGG - chr8_3:56097715-56097734 Msa1296520:CDS 45.0%
GCCATCTTCAAGCTAATTGC+AGG + chr8_3:56097771-56097790 None:intergenic 45.0%
TACAAGTGCAGTAGTGTGAG+AGG - chr8_3:56098181-56098200 Msa1296520:CDS 45.0%
ACAAGTGCAGTAGTGTGAGA+GGG - chr8_3:56098182-56098201 Msa1296520:CDS 45.0%
CTCTCTACATGCTTTCTTGC+TGG + chr8_3:56098211-56098230 None:intergenic 45.0%
! TGATGATGCTTCTATGCTGG+TGG - chr8_3:56098237-56098256 Msa1296520:CDS 45.0%
ATGCTGGTGGTTACCTATGA+AGG - chr8_3:56098250-56098269 Msa1296520:CDS 45.0%
GTGATTGTGCTCTCCTTCAT+AGG + chr8_3:56098266-56098285 None:intergenic 45.0%
!! TGGTCTTGTTGCCACAACAA+TGG - chr8_3:56096857-56096876 Msa1296520:three_prime_UTR 45.0%
CTGCTTTGGTTGTGAAAGCT+TGG + chr8_3:56096914-56096933 None:intergenic 45.0%
CTAAACCAGAAGCTGCTTCT+TGG + chr8_3:56096950-56096969 None:intergenic 45.0%
ACTTGTAGGGTTTGTGATGG+TGG + chr8_3:56097224-56097243 None:intergenic 45.0%
! GTTGGTGGAATCTGTTGCAA+AGG + chr8_3:56097281-56097300 None:intergenic 45.0%
AGGGTAGTAGAAACAGTTGG+TGG + chr8_3:56097296-56097315 None:intergenic 45.0%
!! GAAGTGTAGCTCTGAGACTT+TGG - chr8_3:56097526-56097545 Msa1296520:CDS 45.0%
!! TAGCTCTGAGACTTTGGGTT+CGG - chr8_3:56097532-56097551 Msa1296520:CDS 45.0%
! CTGAATTGGGTTGTTGCAGT+AGG - chr8_3:56097715-56097734 Msa1296520:CDS 45.0%
GCCATCTTCAAGCTAATTGC+AGG + chr8_3:56097771-56097790 None:intergenic 45.0%
TACAAGTGCAGTAGTGTGAG+AGG - chr8_3:56098181-56098200 Msa1296520:CDS 45.0%
ACAAGTGCAGTAGTGTGAGA+GGG - chr8_3:56098182-56098201 Msa1296520:CDS 45.0%
CTCTCTACATGCTTTCTTGC+TGG + chr8_3:56098211-56098230 None:intergenic 45.0%
! TGATGATGCTTCTATGCTGG+TGG - chr8_3:56098237-56098256 Msa1296520:CDS 45.0%
ATGCTGGTGGTTACCTATGA+AGG - chr8_3:56098250-56098269 Msa1296520:CDS 45.0%
GTGATTGTGCTCTCCTTCAT+AGG + chr8_3:56098266-56098285 None:intergenic 45.0%
!! AATATAGAAAAATAAATAAA+GGG + chr8_3:56097654-56097673 None:intergenic 5.0%
!! AAAAATTGTATAAAATATAT+AGG + chr8_3:56097927-56097946 None:intergenic 5.0%
!! AATATAGAAAAATAAATAAA+GGG + chr8_3:56097654-56097673 None:intergenic 5.0%
!! AAAAATTGTATAAAATATAT+AGG + chr8_3:56097927-56097946 None:intergenic 5.0%
!! TGTAGGGTTTGTGATGGTGG+TGG + chr8_3:56097221-56097240 None:intergenic 50.0%
!! GTAATCTGAAAAGCACCCGC+CGG + chr8_3:56097446-56097465 None:intergenic 50.0%
!! AGCTCTGAGACTTTGGGTTC+GGG - chr8_3:56097533-56097552 Msa1296520:CDS 50.0%
! ACTTTGGGTTCGGGAAAGTG+TGG - chr8_3:56097542-56097561 Msa1296520:CDS 50.0%
!! TGTAGGGTTTGTGATGGTGG+TGG + chr8_3:56097221-56097240 None:intergenic 50.0%
!! GTAATCTGAAAAGCACCCGC+CGG + chr8_3:56097446-56097465 None:intergenic 50.0%
!! AGCTCTGAGACTTTGGGTTC+GGG - chr8_3:56097533-56097552 Msa1296520:CDS 50.0%
! ACTTTGGGTTCGGGAAAGTG+TGG - chr8_3:56097542-56097561 Msa1296520:CDS 50.0%
TGTTGCCACAACAATGGCCG+TGG - chr8_3:56096863-56096882 Msa1296520:three_prime_UTR 55.0%
GTAGCCTGTCATGAGCTCCA+CGG + chr8_3:56096883-56096902 None:intergenic 55.0%
GCTGTCCAAGAAGCAGCTTC+TGG - chr8_3:56096942-56096961 Msa1296520:three_prime_UTR 55.0%
!! GGTGGTGGTGGTTGTGGTAA+AGG + chr8_3:56097206-56097225 None:intergenic 55.0%
!! TGTGATGGTGGTGGTGGTTG+TGG + chr8_3:56097212-56097231 None:intergenic 55.0%
!! AGGGTTTGTGATGGTGGTGG+TGG + chr8_3:56097218-56097237 None:intergenic 55.0%
TGTTGCCACAACAATGGCCG+TGG - chr8_3:56096863-56096882 Msa1296520:three_prime_UTR 55.0%
GTAGCCTGTCATGAGCTCCA+CGG + chr8_3:56096883-56096902 None:intergenic 55.0%
GCTGTCCAAGAAGCAGCTTC+TGG - chr8_3:56096942-56096961 Msa1296520:three_prime_UTR 55.0%
!! GGTGGTGGTGGTTGTGGTAA+AGG + chr8_3:56097206-56097225 None:intergenic 55.0%
!! TGTGATGGTGGTGGTGGTTG+TGG + chr8_3:56097212-56097231 None:intergenic 55.0%
!! AGGGTTTGTGATGGTGGTGG+TGG + chr8_3:56097218-56097237 None:intergenic 55.0%
GAGCTCCACGGCCATTGTTG+TGG + chr8_3:56096871-56096890 None:intergenic 60.0%
ATGGCCGTGGAGCTCATGAC+AGG - chr8_3:56096876-56096895 Msa1296520:three_prime_UTR 60.0%
ACAACCGTCGATGTCGTCGC+CGG - chr8_3:56097424-56097443 Msa1296520:intron 60.0%
GAGCTCCACGGCCATTGTTG+TGG + chr8_3:56096871-56096890 None:intergenic 60.0%
ATGGCCGTGGAGCTCATGAC+AGG - chr8_3:56096876-56096895 Msa1296520:three_prime_UTR 60.0%
ACAACCGTCGATGTCGTCGC+CGG - chr8_3:56097424-56097443 Msa1296520:intron 60.0%
ACCGTCGATGTCGTCGCCGG+CGG - chr8_3:56097427-56097446 Msa1296520:intron 70.0%
ACCGTCGATGTCGTCGCCGG+CGG - chr8_3:56097427-56097446 Msa1296520:intron 70.0%
CCCGCCGGCGACGACATCGA+CGG + chr8_3:56097431-56097450 None:intergenic 75.0%
CCGTCGATGTCGTCGCCGGC+GGG - chr8_3:56097428-56097447 Msa1296520:intron 75.0%
CCCGCCGGCGACGACATCGA+CGG + chr8_3:56097431-56097450 None:intergenic 75.0%
CCGTCGATGTCGTCGCCGGC+GGG - chr8_3:56097428-56097447 Msa1296520:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56096773 56098527 56096773 ID=Msa1296520;Name=Msa1296520
chr8_3 mRNA 56096773 56098527 56096773 ID=Msa1296520-mRNA-1;Parent=Msa1296520;Name=Msa1296520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=103|1|1|1|1|1|3|194|337
chr8_3 exon 56096773 56097126 56096773 ID=Msa1296520-mRNA-1:exon:16093;Parent=Msa1296520-mRNA-1
chr8_3 exon 56097438 56097566 56097438 ID=Msa1296520-mRNA-1:exon:16092;Parent=Msa1296520-mRNA-1
chr8_3 exon 56097700 56098527 56097700 ID=Msa1296520-mRNA-1:exon:16091;Parent=Msa1296520-mRNA-1
chr8_3 five_prime_UTR 56098425 56098527 56098425 ID=Msa1296520-mRNA-1:five_prime_utr;Parent=Msa1296520-mRNA-1
chr8_3 CDS 56097700 56098424 56097700 ID=Msa1296520-mRNA-1:cds;Parent=Msa1296520-mRNA-1
chr8_3 CDS 56097438 56097566 56097438 ID=Msa1296520-mRNA-1:cds;Parent=Msa1296520-mRNA-1
chr8_3 CDS 56096967 56097126 56096967 ID=Msa1296520-mRNA-1:cds;Parent=Msa1296520-mRNA-1
chr8_3 three_prime_UTR 56096773 56096966 56096773 ID=Msa1296520-mRNA-1:three_prime_utr;Parent=Msa1296520-mRNA-1
Gene Sequence

>Msa1296520

ATGGCCGTGGAGCTCATGACAGGCTACAACAGAAACCAAGCTTTCACAACCAAAGCAGAAGAAAATGCTGTCCAAGAAGCAGCTTCTGGTTTAGAAAGTGTTGAAAAACTCATAAAACTTCTCTCAGAAGCACGTCACAAATACCAACCTTCTTCATCTTCTTCCTCTTCCTTTTCACCTTCAAACCCTAACAACAATAACAACAACGCTACTATGGATATAGAAAGAGATTGCAAAGCTGTTGCAGACATAGCTGTTTCCAAGTTCAAACGTGTTATTTCACTGCTTGAAAAAACAAGAACTGGTCATGCTCGTTTCAGAAAAGCACCTTTACCACAACCACCACCACCATCACAAACCCTACAAGTTCAACCTTCTGAACCAATGATTTTCAACGCTACACCTTTGCAACAGATTCCACCAACTGTTTCTACTACCCTTCACCGTCCTATAATCAAGAGAAATGATTCTTCTAAAACTCTTAATTTTTCATACTCTTCTGCTGGTAATTCTTTCATTTCTTCACTCACTGGCGACGACAACAGCAAACAACCGTCGATGTCGTCGCCGGCGGGTGCTTTTCAGATTACAAATCTGTCTCATGTTTCATCTGTTGGTAAGCCACCACTCTCTTCTTCTTCATTGAAAAGGAAGTGTAGCTCTGAGACTTTGGGTTCGGGAAAGTGTGGTAGTTCTTCTAGCCGTTGTCATTGTTCCAAAAAAAGTAGGAAAATGAGATTGAAGAGGGTTGTTAGAGTTCCTGCAATTAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGTCAGAAACCTATTAAAGGTTCACCTCATCCAAGGGGATACTACAAGTGCAGTAGTGTGAGAGGGTGTCCAGCAAGAAAGCATGTAGAGAGAGCTCTTGATGATGCTTCTATGCTGGTGGTTACCTATGAAGGAGAGCACAATCACTCTCTTTCTGCAGCTGATGCTAGCAATCTTATTTTAGAATCATCATAG
Protein sequence

>Msa1296520

MAVELMTGYNRNQAFTTKAEENAVQEAASGLESVEKLIKLLSEARHKYQPSSSSSSSFSPSNPNNNNNNATMDIERDCKAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQPPPPSQTLQVQPSEPMIFNATPLQQIPPTVSTTLHRPIIKRNDSSKTLNFSYSSAGNSFISSLTGDDNSKQPSMSSPAGAFQITNLSHVSSVGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADASNLILESS*