AlfalfaGEDB | Msa1256330

M. sativa cultivar zhongmu-4 / Msa1256330

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF10533.12

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256330	XP_013457446.1	98.521	338	4	1	1	337	1	338	0.0	680

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256330	sp\|O22176\|WRK15_ARATH	51.404	356	115	15	1	337	1	317	8.91e-92	279

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256330	A0A072UP79	98.521	338	4	1	1	337	1	338	0.0	680

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1256330	TF	WRKY

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0052360	Msa1256330	0.815453	9.172378e-52	-8.615850e-47
Msa0097370	Msa1256330	0.819054	1.420441e-52	-8.615850e-47
Msa0592330	Msa1256330	0.811476	6.869564e-51	-8.615850e-47
Msa1188350	Msa1256330	0.813131	2.990026e-51	-8.615850e-47
Msa1208110	Msa1256330	0.923149	3.882692e-89	-8.615850e-47
Msa1256330	Msa1296520	0.937546	2.905990e-98	-8.615850e-47
Msa1256330	Msa1328930	0.909628	4.617042e-82	-8.615850e-47
Msa1256330	Msa1370420	0.812552	4.002559e-51	-8.615850e-47
Msa1256330	Msa1402350	0.811452	6.952334e-51	-8.615850e-47
Msa1256330	Msa1418970	0.809146	2.185582e-50	-8.615850e-47

Showing 1 to 10 of 10 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256330	MtrunA17_Chr4g0053281	98.521	338	4	1	1	337	1	338	0.0	680
Msa1256330	MtrunA17_Chr5g0401821	57.817	339	73	9	1	337	1	271	1.55e-113	330
Msa1256330	MtrunA17_Chr1g0147881	40.204	393	126	15	1	337	1	340	9.65e-70	221
Msa1256330	MtrunA17_Chr4g0071521	45.201	323	144	11	20	333	15	313	2.13e-67	214
Msa1256330	MtrunA17_Chr1g0184691	52.198	182	65	4	151	323	183	351	5.18e-48	165
Msa1256330	MtrunA17_Chr3g0139021	50.311	161	73	2	171	331	227	380	2.90e-43	154
Msa1256330	MtrunA17_Chr7g0228941	62.921	89	32	1	246	334	33	120	4.46e-34	121
Msa1256330	MtrunA17_Chr2g0284321	55.172	87	37	2	239	324	9	94	3.58e-27	106
Msa1256330	MtrunA17_Chr7g0270051	55.814	86	34	1	241	322	25	110	7.84e-27	106
Msa1256330	MtrunA17_Chr2g0319961	58.242	91	31	3	240	324	50	139	1.02e-26	106

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256330	AT2G23320.1	51.404	356	115	15	1	337	1	317	9.06e-93	279
Msa1256330	AT4G24240.1	45.503	378	114	14	1	324	1	340	1.97e-85	262
Msa1256330	AT4G31550.1	47.429	350	117	16	1	326	1	307	5.53e-81	249
Msa1256330	AT4G31550.2	46.857	350	118	16	1	326	1	306	1.28e-79	246
Msa1256330	AT2G24570.1	44.242	330	115	13	20	322	13	300	9.13e-71	223
Msa1256330	AT2G23320.2	46.488	299	107	14	1	285	1	260	8.50e-60	193
Msa1256330	AT5G28650.1	42.568	296	99	10	85	323	39	320	1.04e-56	187
Msa1256330	AT3G04670.1	42.667	300	93	13	85	323	39	320	1.40e-56	187
Msa1256330	AT4G24240.2	40.413	339	110	14	1	285	1	301	4.54e-54	179
Msa1256330	AT2G30590.1	76.147	109	22	3	216	322	264	370	2.49e-52	177

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

Find 86 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAAAGAAAAGAAAGT+GGG	0.531483	8_2:-56206881	Msa1256330:three_prime_UTR
AAGATGGTGGATTTGGTAAA+CGG	0.429455	8_2:-56206916	Msa1256330:three_prime_UTR
AAGTGTAGCTCTGAGACTTT+GGG	0.418573	8_2:-56207857	Msa1256330:CDS
AAGTTAAAGAAAAGAAAGTG+GGG	0.621689	8_2:-56206880	Msa1256330:three_prime_UTR
AATAGTCAAGATGGTGGATT+TGG	0.345890	8_2:-56206923	Msa1256330:three_prime_UTR
AATGAAGAAGAAGAGAGTGG+TGG	0.649002	8_2:+56207887	None:intergenic
AATGGTAGTAAATTGTTGGT+TGG	0.464968	8_2:-56207029	Msa1256330:three_prime_UTR
AATTGAAAGTACCTTGGATG+AGG	0.611960	8_2:+56207532	None:intergenic
ACAACCGTCGATGTCGTCGC+CGG	0.589440	8_2:-56207960	Msa1256330:CDS
ACAAGTGTAGTAGTGTGAGA+GGG	0.657147	8_2:-56207203	Msa1256330:CDS

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAGAGAGAGAAAATAAAAC+GGG	+	chr8_2:56206920-56206939	None:intergenic	30.0%
TGAAATAACACGTTTGAACT+TGG	+	chr8_2:56207245-56207264	None:intergenic	30.0%
CATTTCTCTTGATTATAGGA+CGG	+	chr8_2:56207429-56207448	None:intergenic	30.0%
TCTCTTCTTCTTCATTGAAA+AGG	-	chr8_2:56207611-56207630	Msa1256330:CDS	30.0%
GTTGTCATTGTTCCAAAAAA+AGG	-	chr8_2:56207686-56207705	Msa1256330:intron	30.0%
TAGGAAAATGAGATTGAAGA+GGG	-	chr8_2:56207841-56207860	Msa1256330:CDS	30.0%
TTTCTCCAAGAATAATCATC+TGG	+	chr8_2:56207911-56207930	None:intergenic	30.0%
TATGGTCAGAAACCTATTAA+AGG	-	chr8_2:56207932-56207951	Msa1256330:CDS	30.0%
AATGGTAGTAAATTGTTGGT+TGG	-	chr8_2:56208462-56208481	Msa1256330:CDS	30.0%
TACTCAATGTTGAAGGAAAT+TGG	-	chr8_2:56208512-56208531	Msa1256330:exon	30.0%

Showing 1 to 10 of 237 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	56206880	56208633	56206880	ID=Msa1256330;Name=Msa1256330
chr8_2	mRNA	56206880	56208633	56206880	ID=Msa1256330-mRNA-1;Parent=Msa1256330;Name=Msa1256330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=103\|1\|1\|1\|1\|1\|3\|194\|337
chr8_2	exon	56206880	56207233	56206880	ID=Msa1256330-mRNA-1:exon:17380;Parent=Msa1256330-mRNA-1
chr8_2	exon	56207544	56207672	56207544	ID=Msa1256330-mRNA-1:exon:17379;Parent=Msa1256330-mRNA-1
chr8_2	exon	56207806	56208633	56207806	ID=Msa1256330-mRNA-1:exon:17378;Parent=Msa1256330-mRNA-1
chr8_2	five_prime_UTR	56208531	56208633	56208531	ID=Msa1256330-mRNA-1:five_prime_utr;Parent=Msa1256330-mRNA-1
chr8_2	CDS	56207806	56208530	56207806	ID=Msa1256330-mRNA-1:cds;Parent=Msa1256330-mRNA-1
chr8_2	CDS	56207544	56207672	56207544	ID=Msa1256330-mRNA-1:cds;Parent=Msa1256330-mRNA-1
chr8_2	CDS	56207074	56207233	56207074	ID=Msa1256330-mRNA-1:cds;Parent=Msa1256330-mRNA-1
chr8_2	three_prime_UTR	56206880	56207073	56206880	ID=Msa1256330-mRNA-1:three_prime_utr;Parent=Msa1256330-mRNA-1

Gene Sequence

>Msa1256330

ATGGCCGTGGAGCTCATGACAGGCTACAACAGAAACCAAGCTTTCACAACCAAAGCAGAAGAAAATGCTGTCCAAGAAGCAGCTTCTGGTTTAGAAAGTGTTGAAAAACTCATAAAACTTCTCTCAGAAGCACGTCACAAATACCAACCTTCTTCATCTTCTTCCTCTTCCTTTTCACCTTCAAACCCTAACAACAATAACAACAACGCTACTATGGATATAGAAAGAGATTGCAAAGCTGTTGCAGACATAGCTGTTTCCAAGTTCAAACGTGTTATTTCACTGCTTGAAAAAACAAGAACTGGTCATGCTCGTTTCAGAAAAGCACCTTTACCACAACCACCACCACCATCACAAACCCTACAAGTTCAACCTTCTGAACCAATGATTTTCAACGCTACACCTTTGCAACAGATTCCACCAACTGTTTCTACTACCCTTCACCGTCCTATAATCAAGAGAAATGATTCTTCTAAAACTCTTAATTTTTCATACTCTTCTGCTGGTAATTCTTTCATTTCTTCACTCACTGGCGACGACAACAGCAAACAACCGTCGATGTCGTCGCCGGCGGGTGCTTTTCAGATTACAAATCTGTCTCATGTTTCATCTGTTGGTAAGCCACCACTCTCTTCTTCTTCATTGAAAAGGAAGTGTAGCTCTGAGACTTTGGGTTCGGGAAAGTGTGGTAGTTCTTCTAGCCGTTGTCATTGTTCCAAAAAAAGTAGGAAAATGAGATTGAAGAGGGTTGTTAGGGTTCCTGCAATTAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGTCAGAAACCTATTAAAGGTTCACCTCATCCAAGGGGATACTACAAGTGTAGTAGTGTGAGAGGGTGTCCAGCAAGAAAGCATGTAGAGAGAGCTCTTGATGATGCTTCTATGCTGGTGGTTACCTATGAAGGAGAGCACAATCACTCTCTTTCTGCAGCTGATGCTAGCAATCTTATTTTAGAATCATCATAG

Protein sequence

>Msa1256330

MAVELMTGYNRNQAFTTKAEENAVQEAASGLESVEKLIKLLSEARHKYQPSSSSSSSFSPSNPNNNNNNATMDIERDCKAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQPPPPSQTLQVQPSEPMIFNATPLQQIPPTVSTTLHRPIIKRNDSSKTLNFSYSSAGNSFISSLTGDDNSKQPSMSSPAGAFQITNLSHVSSVGKPPLSSSSLKRKCSSETLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADASNLILESS*