AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1329560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329560 MtrunA17_Chr4g0053711 90.557 413 21 3 1 395 74 486 0.0 750
Msa1329560 MtrunA17_Chr8g0337661 36.364 451 249 12 4 424 78 520 2.20e-75 245
Msa1329560 MtrunA17_Chr8g0337651 38.442 398 211 10 4 372 78 470 1.20e-70 233
Msa1329560 MtrunA17_Chr1g0205391 30.471 361 217 6 3 355 72 406 1.30e-41 154
Msa1329560 MtrunA17_Chr3g0101121 28.736 348 209 9 7 347 42 357 1.94e-30 123
Msa1329560 MtrunA17_Chr8g0390621 29.538 325 186 8 77 388 119 413 1.08e-28 118
Msa1329560 MtrunA17_Chr5g0445281 27.692 325 192 8 47 357 94 389 7.65e-26 110
Msa1329560 MtrunA17_Chr2g0280141 36.601 153 92 2 202 352 669 818 1.57e-18 88.6
Msa1329560 MtrunA17_Chr5g0434761 29.796 245 147 9 113 353 41 264 1.10e-16 79.7
Msa1329560 MtrunA17_Chr2g0325711 28.959 221 132 5 135 333 601 818 1.96e-14 75.9
Msa1329560 MtrunA17_Chr6g0471251 26.446 242 156 5 113 350 543 766 9.30e-14 73.6
Msa1329560 MtrunA17_Chr8g0361651 28.019 207 135 6 147 348 207 404 6.04e-12 67.4
Msa1329560 MtrunA17_Chr3g0131341 24.014 279 192 8 81 348 156 425 8.15e-12 67.4
Msa1329560 MtrunA17_Chr2g0325611 28.319 226 145 6 113 337 366 575 1.13e-11 66.6
Msa1329560 MtrunA17_Chr2g0325351 27.679 224 147 4 113 336 464 672 1.45e-11 66.6
Msa1329560 MtrunA17_Chr2g0325621 27.984 243 154 6 111 350 435 659 2.05e-11 66.2
Msa1329560 MtrunA17_Chr2g0325661 30.400 250 149 9 100 344 636 865 3.93e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329560 AT5G48385.1 38.660 388 193 13 20 370 94 473 3.31e-67 224
Msa1329560 AT3G22440.1 33.681 288 175 5 77 355 131 411 2.54e-41 154
Msa1329560 AT4G14900.1 33.448 290 175 5 77 355 127 409 8.28e-41 152
Msa1329560 AT1G31814.1 28.803 309 191 8 76 370 89 382 3.36e-27 114
Msa1329560 AT5G16320.1 26.923 312 188 7 76 374 100 384 1.03e-26 112
Msa1329560 AT5G27230.1 26.210 248 167 3 105 348 566 801 6.25e-18 87.0
Msa1329560 AT5G27220.1 27.234 235 140 7 113 341 872 1081 4.48e-13 72.0
Msa1329560 AT5G27220.3 27.234 235 140 7 113 341 872 1081 4.48e-13 72.0
Msa1329560 AT5G27220.4 26.702 191 116 5 166 341 845 1026 3.48e-12 69.3
Msa1329560 AT5G27220.2 26.702 191 116 5 166 341 845 1026 3.48e-12 69.3

Find 129 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGCTTGCTGCTGGTTTC+AGG 0.039233 8_4:-48244191 None:intergenic
CAAATCCTGTATTCTAATTT+TGG 0.128711 8_4:+48244112 Msa1329560:CDS
CACTTGATACACTCCATAAA+AGG 0.188926 8_4:+48245038 Msa1329560:CDS
GGAAGCCATGGCCAGCTTAT+TGG 0.246773 8_4:+48244133 Msa1329560:CDS
TAACGTGGGTGCTGCCCTTC+AGG 0.253926 8_4:+48244082 Msa1329560:CDS
CCTGAGCTCTGCCGCTCTAT+TGG 0.259467 8_4:+48244391 Msa1329560:CDS
TGCAGCTTCTTTCTACTTAT+AGG 0.269952 8_4:+48244299 Msa1329560:CDS
GAAAGTTTATTGTGAGAAAA+TGG 0.283715 8_4:+48243896 Msa1329560:CDS
TTAGGCCTTGGCCTCTTTGA+TGG 0.295724 8_4:-48245127 None:intergenic
AATGGATGCAACAGGCCTTC+TGG 0.301749 8_4:+48243914 Msa1329560:CDS
GCTGCTTCAGCTGTCGTTAC+TGG 0.302021 8_4:+48245187 Msa1329560:CDS
GACTTATTAGGAGAGTCTTC+AGG 0.313010 8_4:-48243822 None:intergenic
CTGGTGCTTGATTTACTATT+GGG 0.317118 8_4:+48244023 Msa1329560:CDS
ACTGGTGCTTGATTTACTAT+TGG 0.318956 8_4:+48244022 Msa1329560:CDS
ATGTGCAACTGCAGCATAAT+GGG 0.320159 8_4:-48245262 None:intergenic
TTACTTGTGAATTTCTCCTT+TGG 0.330915 8_4:-48244787 None:intergenic
CAATTGCCTTGGCTTGCTGC+TGG 0.345233 8_4:-48244198 None:intergenic
TCTAACTATGGTCGTTATAT+AGG 0.346573 8_4:+48245339 Msa1329560:CDS
CCACTCATTGGCAATTGCCT+TGG 0.351735 8_4:-48244209 None:intergenic
TATGTCCTCAGGAGGGGAAC+AGG 0.354514 8_4:-48244755 None:intergenic
AAAGTTGTAGTCACGTCATT+TGG 0.377510 8_4:-48243750 None:intergenic
TTGGCTTGCTGCTGGTTTCA+GGG 0.380551 8_4:-48244190 None:intergenic
CCAATAGAGCGGCAGAGCTC+AGG 0.384993 8_4:-48244391 None:intergenic
ATTTGGTGACAAAACTCGTT+TGG 0.385535 8_4:+48245578 Msa1329560:three_prime_UTR
GTAAGAGTACACCTGCCTTC+TGG 0.398250 8_4:-48245511 None:intergenic
CATGTGCAACTGCAGCATAA+TGG 0.399358 8_4:-48245263 None:intergenic
GCACATGATTATCAAGTTCC+TGG 0.400769 8_4:+48245279 Msa1329560:CDS
GGCTTCCAAAATTAGAATAC+AGG 0.408615 8_4:-48244117 None:intergenic
CTTGGCCTCTTTGATGGTTG+AGG 0.414011 8_4:-48245121 None:intergenic
AGATCTATTAGATCGTTTGC+AGG 0.417033 8_4:+48243686 Msa1329560:CDS
GTAAACTCAAACAAAACAAA+AGG 0.421886 8_4:-48245481 None:intergenic
ATTTGGACGAGCCTCTATAA+TGG 0.430724 8_4:-48243733 None:intergenic
CGCTGTAGCTTCCATTATAG+AGG 0.432827 8_4:+48243722 Msa1329560:CDS
TGCTGGTTTCAGGGTTCAAA+AGG 0.434483 8_4:-48244181 None:intergenic
TGTTGGCTAGTTTCATTGTC+GGG 0.435015 8_4:-48244053 None:intergenic
AGTGCAACTCCTTCTAACTA+TGG 0.435897 8_4:+48245327 Msa1329560:CDS
TGAAGTGTATGTTAAACATT+TGG 0.438652 8_4:+48245561 Msa1329560:three_prime_UTR
TGCTGCCAATGGAAATTCAT+TGG 0.440898 8_4:+48244261 Msa1329560:CDS
CCACAGACTCGACCTACAAT+TGG 0.443526 8_4:-48245622 None:intergenic
TTGTTGGCTAGTTTCATTGT+CGG 0.456619 8_4:-48244054 None:intergenic
AAATGCCTCTCGTTAGGCCT+TGG 0.463163 8_4:-48245139 None:intergenic
AAGGAGAAATTCACAAGTAA+AGG 0.464474 8_4:+48244790 Msa1329560:CDS
TTTGGCTAATACAATGGAGT+TGG 0.465440 8_4:+48245596 Msa1329560:three_prime_UTR
TAACTTGAGCCTCCACTCAT+TGG 0.468007 8_4:-48244221 None:intergenic
CCACTCCGTTCATCTGGTCG+TGG 0.468116 8_4:+48245163 Msa1329560:CDS
TCGAAGCTTTAATCAACAAT+GGG 0.470100 8_4:+48244675 Msa1329560:CDS
ACTTATTAGGAGAGTCTTCA+GGG 0.471039 8_4:-48243821 None:intergenic
CATTTATATCCAATGGTCAC+TGG 0.473360 8_4:+48245533 Msa1329560:three_prime_UTR
AACGTGGGTGCTGCCCTTCA+GGG 0.476480 8_4:+48244083 Msa1329560:CDS
CAAGTCATTTCAGCAATGCT+TGG 0.479348 8_4:-48245406 None:intergenic
CCTGCATATGCTGTCCTAGC+AGG 0.482164 8_4:-48245222 None:intergenic
GGCTTAACTCACAAAGTGCC+AGG 0.482907 8_4:+48244412 Msa1329560:CDS
TTCATTTAACCAGTGACCAT+TGG 0.483090 8_4:-48245542 None:intergenic
TGTGAGAAAATGGATGCAAC+AGG 0.483398 8_4:+48243906 Msa1329560:CDS
TGCAACAGATCCAGCACGAC+TGG 0.484264 8_4:+48244004 Msa1329560:intron
ATCGAAGCTTTAATCAACAA+TGG 0.486111 8_4:+48244674 Msa1329560:CDS
TACATTACTTACACAGAGAA+AGG 0.487033 8_4:+48243641 Msa1329560:CDS
AAATCAAGCACCAGTCGTGC+TGG 0.489484 8_4:-48244014 None:intergenic
ATATAACGACCATAGTTAGA+AGG 0.490939 8_4:-48245336 None:intergenic
TTCAAAAGGTGATCTGCACC+TGG 0.491721 8_4:-48244167 None:intergenic
GAAGACTCTCCTAATAAGTC+AGG 0.492983 8_4:+48243825 Msa1329560:CDS
AGCTGTCGTTACTGGTAGGC+AGG 0.493852 8_4:+48245195 Msa1329560:CDS
TGCTTCCAATGAATTTCCAT+TGG 0.494489 8_4:-48244266 None:intergenic
AAGGTGTGGCTACTGAGGTT+AGG 0.495803 8_4:+48243859 Msa1329560:CDS
AGTGGAAAATGCCTCTCGTT+AGG 0.497797 8_4:-48245145 None:intergenic
TGCAGCAAGCTCTTGTGCAT+TGG 0.499876 8_4:-48244963 None:intergenic
TGTCCTCAGGAGGGGAACAG+GGG 0.503282 8_4:-48244753 None:intergenic
TTAGAAGGAGTTGCACTAGC+TGG 0.503631 8_4:-48245321 None:intergenic
ATGTTAATCACATGTAATGA+TGG 0.506830 8_4:-48245383 None:intergenic
AGGATTTGCGCTTGCCCTGA+AGG 0.508132 8_4:-48244097 None:intergenic
GGATTTGCGCTTGCCCTGAA+GGG 0.512055 8_4:-48244096 None:intergenic
AACTCGTTTGGCTAATACAA+TGG 0.512219 8_4:+48245590 Msa1329560:three_prime_UTR
GTCAGCCCTTGCCAATAAGC+TGG 0.512323 8_4:-48244144 None:intergenic
ACTTGATACACTCCATAAAA+GGG 0.528929 8_4:+48245039 Msa1329560:CDS
ATGTCCTCAGGAGGGGAACA+GGG 0.536265 8_4:-48244754 None:intergenic
TGGAGTTGGAAACCAATTGT+AGG 0.539364 8_4:+48245610 Msa1329560:three_prime_UTR
ACTCTTACATTTATATCCAA+TGG 0.540339 8_4:+48245526 Msa1329560:three_prime_UTR
TGGAAATTCATTGGAAGCAG+AGG 0.542065 8_4:+48244270 Msa1329560:CDS
CTGGCTGAGTGTACATAGAC+TGG 0.547487 8_4:-48245302 None:intergenic
CCTGCTAGGACAGCATATGC+AGG 0.551952 8_4:+48245222 Msa1329560:CDS
GAGTGTATCAAGTGGGTACT+CGG 0.553451 8_4:-48245029 None:intergenic
CTTCAGCTGTCGTTACTGGT+AGG 0.554758 8_4:+48245191 Msa1329560:CDS
GACCTATTCTGAGCAACTGC+AGG 0.555204 8_4:-48244364 None:intergenic
CCTTGCCAATAAGCTGGCCA+TGG 0.555682 8_4:-48244138 None:intergenic
CCATGGCCAGCTTATTGGCA+AGG 0.560898 8_4:+48244138 Msa1329560:CDS
TAAACTCAAACAAAACAAAA+GGG 0.561246 8_4:-48245480 None:intergenic
AGCATAATGGGGATACCTGT+CGG 0.563349 8_4:-48245250 None:intergenic
CTCAACCATCAAAGAGGCCA+AGG 0.565712 8_4:+48245122 Msa1329560:CDS
AGGCCTTCTGGATTATGTTG+TGG 0.575315 8_4:+48243926 Msa1329560:CDS
GTCTGAAGGTGTGGCTACTG+AGG 0.578170 8_4:+48243854 Msa1329560:CDS
CTGAAACCAGCAGCAAGCCA+AGG 0.580575 8_4:+48244192 Msa1329560:CDS
CTCTATAATGGAAGCTACAG+CGG 0.582684 8_4:-48243721 None:intergenic
CATGGCCAGCTTATTGGCAA+GGG 0.584197 8_4:+48244139 Msa1329560:CDS
TGTTAATCACATGTAATGAT+GGG 0.591110 8_4:-48245382 None:intergenic
TACCTGCAGTTGCTCAGAAT+AGG 0.593428 8_4:+48244362 Msa1329560:CDS
CCGTGATATTGCTACTGCAA+AGG 0.593436 8_4:+48244823 Msa1329560:CDS
CCAAGGCAATTGCCAATGAG+TGG 0.594398 8_4:+48244209 Msa1329560:CDS
CATATGCAGGAACTGCCGAC+AGG 0.594589 8_4:+48245235 Msa1329560:CDS
TTGAGGTATGTCCTCAGGAG+GGG 0.596237 8_4:-48244761 None:intergenic
TGAGTGTACATAGACTGGCC+AGG 0.604971 8_4:-48245297 None:intergenic
GTCCTCAGGAGGGGAACAGG+GGG 0.606574 8_4:-48244752 None:intergenic
TTTGAGGTATGTCCTCAGGA+GGG 0.608468 8_4:-48244762 None:intergenic
TTACTACGATACCAGAAGGC+AGG 0.610117 8_4:+48245500 Msa1329560:three_prime_UTR
GCAGGCATTGATGCTGCCAA+TGG 0.610237 8_4:+48244250 Msa1329560:intron
AGGTGAAAAGTCTGAAGGTG+TGG 0.611158 8_4:+48243845 Msa1329560:CDS
AACGTCCTCAACCATCAAAG+AGG 0.614792 8_4:+48245116 Msa1329560:CDS
TCACATGTAATGATGGGGTG+TGG 0.615343 8_4:-48245376 None:intergenic
GAGTTTACTACGATACCAGA+AGG 0.619463 8_4:+48245496 Msa1329560:three_prime_UTR
TAAACTTTCAAGTCTAGATG+TGG 0.620154 8_4:-48243882 None:intergenic
AAGTCAGGTGAAAAGTCTGA+AGG 0.629348 8_4:+48243840 Msa1329560:CDS
ACTTACACAGAGAAAGGCGG+CGG 0.634266 8_4:+48243647 Msa1329560:CDS
CAGCACCACGACCAGATGAA+CGG 0.637196 8_4:-48245168 None:intergenic
TAGCCAACAAAATGATAACG+TGG 0.639879 8_4:+48244067 Msa1329560:CDS
GCATATGCTGTCCTAGCAGG+CGG 0.642715 8_4:-48245219 None:intergenic
GTGCCACAACATAATCCAGA+AGG 0.644869 8_4:-48243929 None:intergenic
AGGCAATTGCCAATGAGTGG+AGG 0.645365 8_4:+48244212 Msa1329560:CDS
TGCAGTTGCTCAGAATAGGT+CGG 0.649194 8_4:+48244366 Msa1329560:CDS
TTATTGGCAAGGGCTGACCC+AGG 0.655090 8_4:+48244149 Msa1329560:CDS
GATTGCTTCAGAGTTTGATG+AGG 0.655845 8_4:+48244321 Msa1329560:CDS
TCAAAAGGTGATCTGCACCT+GGG 0.657603 8_4:-48244166 None:intergenic
CCTTTGCAGTAGCAATATCA+CGG 0.661287 8_4:-48244823 None:intergenic
TGTGCAACTGCAGCATAATG+GGG 0.673444 8_4:-48245261 None:intergenic
AGAGGCCAAGGCCTAACGAG+AGG 0.675297 8_4:+48245134 Msa1329560:CDS
GTTAATCACATGTAATGATG+GGG 0.686353 8_4:-48245381 None:intergenic
CTTATTAGGAGAGTCTTCAG+GGG 0.708449 8_4:-48243820 None:intergenic
CCACGACCAGATGAACGGAG+TGG 0.714251 8_4:-48245163 None:intergenic
AGCCAACAAAATGATAACGT+GGG 0.717393 8_4:+48244068 Msa1329560:CDS
TGTGAGTTAAGCCAATAGAG+CGG 0.723341 8_4:-48244402 None:intergenic
ATTACTTACACAGAGAAAGG+CGG 0.727859 8_4:+48243644 Msa1329560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTCATTTAATTATTGTTGT+TGG + chr8_4:48244902-48244921 Msa1329560:intron 20.0%
!!! CTCATTTAATTATTGTTGTT+GGG + chr8_4:48244903-48244922 Msa1329560:intron 20.0%
!! GGGAATATTTAAAAAAAAGT+AGG - chr8_4:48245463-48245482 None:intergenic 20.0%
!! TAAACTCAAACAAAACAAAA+GGG - chr8_4:48245483-48245502 None:intergenic 20.0%
!! TCTCATTTAATTATTGTTGT+TGG + chr8_4:48244902-48244921 Msa1329560:intron 20.0%
!!! CTCATTTAATTATTGTTGTT+GGG + chr8_4:48244903-48244922 Msa1329560:intron 20.0%
!! GGGAATATTTAAAAAAAAGT+AGG - chr8_4:48245463-48245482 None:intergenic 20.0%
!! TAAACTCAAACAAAACAAAA+GGG - chr8_4:48245483-48245502 None:intergenic 20.0%
!!! ACTTTTGATTTTGTGTATGA+TGG + chr8_4:48243768-48243787 Msa1329560:intron 25.0%
!!! CTTTTGATTTTGTGTATGAT+GGG + chr8_4:48243769-48243788 Msa1329560:intron 25.0%
!!! TTTTGATTTTGTGTATGATG+GGG + chr8_4:48243770-48243789 Msa1329560:intron 25.0%
! GAAAGTTTATTGTGAGAAAA+TGG + chr8_4:48243896-48243915 Msa1329560:CDS 25.0%
!! CAAATCCTGTATTCTAATTT+TGG + chr8_4:48244112-48244131 Msa1329560:CDS 25.0%
! TGTTGTGGTATTATATTGTT+AGG + chr8_4:48244594-48244613 Msa1329560:intron 25.0%
! TGTTAATCACATGTAATGAT+GGG - chr8_4:48245385-48245404 None:intergenic 25.0%
! ATGTTAATCACATGTAATGA+TGG - chr8_4:48245386-48245405 None:intergenic 25.0%
! AAAAAGTAGGATAGAACTAA+TGG - chr8_4:48245450-48245469 None:intergenic 25.0%
! GTAAACTCAAACAAAACAAA+AGG - chr8_4:48245484-48245503 None:intergenic 25.0%
! ACTCTTACATTTATATCCAA+TGG + chr8_4:48245526-48245545 Msa1329560:three_prime_UTR 25.0%
! TGAAGTGTATGTTAAACATT+TGG + chr8_4:48245561-48245580 Msa1329560:three_prime_UTR 25.0%
!!! ACTTTTGATTTTGTGTATGA+TGG + chr8_4:48243768-48243787 Msa1329560:intron 25.0%
!!! CTTTTGATTTTGTGTATGAT+GGG + chr8_4:48243769-48243788 Msa1329560:intron 25.0%
!!! TTTTGATTTTGTGTATGATG+GGG + chr8_4:48243770-48243789 Msa1329560:intron 25.0%
! GAAAGTTTATTGTGAGAAAA+TGG + chr8_4:48243896-48243915 Msa1329560:CDS 25.0%
!! CAAATCCTGTATTCTAATTT+TGG + chr8_4:48244112-48244131 Msa1329560:CDS 25.0%
! TGTTGTGGTATTATATTGTT+AGG + chr8_4:48244594-48244613 Msa1329560:intron 25.0%
! TGTTAATCACATGTAATGAT+GGG - chr8_4:48245385-48245404 None:intergenic 25.0%
! ATGTTAATCACATGTAATGA+TGG - chr8_4:48245386-48245405 None:intergenic 25.0%
! AAAAAGTAGGATAGAACTAA+TGG - chr8_4:48245450-48245469 None:intergenic 25.0%
! GTAAACTCAAACAAAACAAA+AGG - chr8_4:48245484-48245503 None:intergenic 25.0%
! ACTCTTACATTTATATCCAA+TGG + chr8_4:48245526-48245545 Msa1329560:three_prime_UTR 25.0%
! TGAAGTGTATGTTAAACATT+TGG + chr8_4:48245561-48245580 Msa1329560:three_prime_UTR 25.0%
TACATTACTTACACAGAGAA+AGG + chr8_4:48243641-48243660 Msa1329560:CDS 30.0%
! TAAACTTTCAAGTCTAGATG+TGG - chr8_4:48243885-48243904 None:intergenic 30.0%
!! TATTCTAATTTTGGAAGCCA+TGG + chr8_4:48244121-48244140 Msa1329560:CDS 30.0%
TTATTAAAAGAACACCAACC+TGG - chr8_4:48244433-48244452 None:intergenic 30.0%
!! ATACTTTTCTGCTTTTGTTG+TGG + chr8_4:48244579-48244598 Msa1329560:intron 30.0%
TGTGGTATTATATTGTTAGG+TGG + chr8_4:48244597-48244616 Msa1329560:intron 30.0%
! ATCGAAGCTTTAATCAACAA+TGG + chr8_4:48244674-48244693 Msa1329560:CDS 30.0%
! TCGAAGCTTTAATCAACAAT+GGG + chr8_4:48244675-48244694 Msa1329560:CDS 30.0%
!!! AATTTCTCCTTTGGTTTTTG+AGG - chr8_4:48244781-48244800 None:intergenic 30.0%
TTACTTGTGAATTTCTCCTT+TGG - chr8_4:48244790-48244809 None:intergenic 30.0%
AAGGAGAAATTCACAAGTAA+AGG + chr8_4:48244790-48244809 Msa1329560:CDS 30.0%
! TTTTATGGAGTGTATCAAGT+GGG - chr8_4:48245039-48245058 None:intergenic 30.0%
ACTTGATACACTCCATAAAA+GGG + chr8_4:48245039-48245058 Msa1329560:CDS 30.0%
AGAAAGCAAAGACAGAAAAA+AGG + chr8_4:48245074-48245093 Msa1329560:CDS 30.0%
ATATAACGACCATAGTTAGA+AGG - chr8_4:48245339-48245358 None:intergenic 30.0%
TCTAACTATGGTCGTTATAT+AGG + chr8_4:48245339-48245358 Msa1329560:CDS 30.0%
GTTAATCACATGTAATGATG+GGG - chr8_4:48245384-48245403 None:intergenic 30.0%
TACATTACTTACACAGAGAA+AGG + chr8_4:48243641-48243660 Msa1329560:CDS 30.0%
! TAAACTTTCAAGTCTAGATG+TGG - chr8_4:48243885-48243904 None:intergenic 30.0%
!! TATTCTAATTTTGGAAGCCA+TGG + chr8_4:48244121-48244140 Msa1329560:CDS 30.0%
TTATTAAAAGAACACCAACC+TGG - chr8_4:48244433-48244452 None:intergenic 30.0%
!! ATACTTTTCTGCTTTTGTTG+TGG + chr8_4:48244579-48244598 Msa1329560:intron 30.0%
TGTGGTATTATATTGTTAGG+TGG + chr8_4:48244597-48244616 Msa1329560:intron 30.0%
! ATCGAAGCTTTAATCAACAA+TGG + chr8_4:48244674-48244693 Msa1329560:CDS 30.0%
! TCGAAGCTTTAATCAACAAT+GGG + chr8_4:48244675-48244694 Msa1329560:CDS 30.0%
!!! AATTTCTCCTTTGGTTTTTG+AGG - chr8_4:48244781-48244800 None:intergenic 30.0%
TTACTTGTGAATTTCTCCTT+TGG - chr8_4:48244790-48244809 None:intergenic 30.0%
AAGGAGAAATTCACAAGTAA+AGG + chr8_4:48244790-48244809 Msa1329560:CDS 30.0%
! TTTTATGGAGTGTATCAAGT+GGG - chr8_4:48245039-48245058 None:intergenic 30.0%
ACTTGATACACTCCATAAAA+GGG + chr8_4:48245039-48245058 Msa1329560:CDS 30.0%
AGAAAGCAAAGACAGAAAAA+AGG + chr8_4:48245074-48245093 Msa1329560:CDS 30.0%
ATATAACGACCATAGTTAGA+AGG - chr8_4:48245339-48245358 None:intergenic 30.0%
TCTAACTATGGTCGTTATAT+AGG + chr8_4:48245339-48245358 Msa1329560:CDS 30.0%
GTTAATCACATGTAATGATG+GGG - chr8_4:48245384-48245403 None:intergenic 30.0%
ATTACTTACACAGAGAAAGG+CGG + chr8_4:48243644-48243663 Msa1329560:CDS 35.0%
AGATCTATTAGATCGTTTGC+AGG + chr8_4:48243686-48243705 Msa1329560:CDS 35.0%
AAAGTTGTAGTCACGTCATT+TGG - chr8_4:48243753-48243772 None:intergenic 35.0%
ACTTATTAGGAGAGTCTTCA+GGG - chr8_4:48243824-48243843 None:intergenic 35.0%
! GACTTTTCACCTGACTTATT+AGG - chr8_4:48243837-48243856 None:intergenic 35.0%
ACTGGTGCTTGATTTACTAT+TGG + chr8_4:48244022-48244041 Msa1329560:CDS 35.0%
CTGGTGCTTGATTTACTATT+GGG + chr8_4:48244023-48244042 Msa1329560:CDS 35.0%
!! TTGTTGGCTAGTTTCATTGT+CGG - chr8_4:48244057-48244076 None:intergenic 35.0%
! TAGCCAACAAAATGATAACG+TGG + chr8_4:48244067-48244086 Msa1329560:CDS 35.0%
! AGCCAACAAAATGATAACGT+GGG + chr8_4:48244068-48244087 Msa1329560:CDS 35.0%
GGCTTCCAAAATTAGAATAC+AGG - chr8_4:48244120-48244139 None:intergenic 35.0%
TGCTTCCAATGAATTTCCAT+TGG - chr8_4:48244269-48244288 None:intergenic 35.0%
TGCAGCTTCTTTCTACTTAT+AGG + chr8_4:48244299-48244318 Msa1329560:CDS 35.0%
AAGACTGCTCATCTAGTATA+GGG - chr8_4:48244506-48244525 None:intergenic 35.0%
TAGATGAGCAGTCTTCTTTA+GGG + chr8_4:48244511-48244530 Msa1329560:intron 35.0%
! CTTTTATGGAGTGTATCAAG+TGG - chr8_4:48245040-48245059 None:intergenic 35.0%
CACTTGATACACTCCATAAA+AGG + chr8_4:48245038-48245057 Msa1329560:CDS 35.0%
!!! CTAGTTGATGAACCCTTTTA+TGG - chr8_4:48245054-48245073 None:intergenic 35.0%
CATTTATATCCAATGGTCAC+TGG + chr8_4:48245533-48245552 Msa1329560:three_prime_UTR 35.0%
TTCATTTAACCAGTGACCAT+TGG - chr8_4:48245545-48245564 None:intergenic 35.0%
! ATTTGGTGACAAAACTCGTT+TGG + chr8_4:48245578-48245597 Msa1329560:three_prime_UTR 35.0%
AACTCGTTTGGCTAATACAA+TGG + chr8_4:48245590-48245609 Msa1329560:three_prime_UTR 35.0%
TTTGGCTAATACAATGGAGT+TGG + chr8_4:48245596-48245615 Msa1329560:three_prime_UTR 35.0%
ATTACTTACACAGAGAAAGG+CGG + chr8_4:48243644-48243663 Msa1329560:CDS 35.0%
AGATCTATTAGATCGTTTGC+AGG + chr8_4:48243686-48243705 Msa1329560:CDS 35.0%
AAAGTTGTAGTCACGTCATT+TGG - chr8_4:48243753-48243772 None:intergenic 35.0%
ACTTATTAGGAGAGTCTTCA+GGG - chr8_4:48243824-48243843 None:intergenic 35.0%
! GACTTTTCACCTGACTTATT+AGG - chr8_4:48243837-48243856 None:intergenic 35.0%
ACTGGTGCTTGATTTACTAT+TGG + chr8_4:48244022-48244041 Msa1329560:CDS 35.0%
CTGGTGCTTGATTTACTATT+GGG + chr8_4:48244023-48244042 Msa1329560:CDS 35.0%
!! TTGTTGGCTAGTTTCATTGT+CGG - chr8_4:48244057-48244076 None:intergenic 35.0%
! TAGCCAACAAAATGATAACG+TGG + chr8_4:48244067-48244086 Msa1329560:CDS 35.0%
! AGCCAACAAAATGATAACGT+GGG + chr8_4:48244068-48244087 Msa1329560:CDS 35.0%
GGCTTCCAAAATTAGAATAC+AGG - chr8_4:48244120-48244139 None:intergenic 35.0%
TGCTTCCAATGAATTTCCAT+TGG - chr8_4:48244269-48244288 None:intergenic 35.0%
TGCAGCTTCTTTCTACTTAT+AGG + chr8_4:48244299-48244318 Msa1329560:CDS 35.0%
AAGACTGCTCATCTAGTATA+GGG - chr8_4:48244506-48244525 None:intergenic 35.0%
TAGATGAGCAGTCTTCTTTA+GGG + chr8_4:48244511-48244530 Msa1329560:intron 35.0%
! CTTTTATGGAGTGTATCAAG+TGG - chr8_4:48245040-48245059 None:intergenic 35.0%
CACTTGATACACTCCATAAA+AGG + chr8_4:48245038-48245057 Msa1329560:CDS 35.0%
!!! CTAGTTGATGAACCCTTTTA+TGG - chr8_4:48245054-48245073 None:intergenic 35.0%
CATTTATATCCAATGGTCAC+TGG + chr8_4:48245533-48245552 Msa1329560:three_prime_UTR 35.0%
TTCATTTAACCAGTGACCAT+TGG - chr8_4:48245545-48245564 None:intergenic 35.0%
! ATTTGGTGACAAAACTCGTT+TGG + chr8_4:48245578-48245597 Msa1329560:three_prime_UTR 35.0%
AACTCGTTTGGCTAATACAA+TGG + chr8_4:48245590-48245609 Msa1329560:three_prime_UTR 35.0%
TTTGGCTAATACAATGGAGT+TGG + chr8_4:48245596-48245615 Msa1329560:three_prime_UTR 35.0%
! CTCTATAATGGAAGCTACAG+CGG - chr8_4:48243724-48243743 None:intergenic 40.0%
ATTTGGACGAGCCTCTATAA+TGG - chr8_4:48243736-48243755 None:intergenic 40.0%
!! TGATTTTGTGTATGATGGGG+AGG + chr8_4:48243773-48243792 Msa1329560:intron 40.0%
CTTATTAGGAGAGTCTTCAG+GGG - chr8_4:48243823-48243842 None:intergenic 40.0%
GACTTATTAGGAGAGTCTTC+AGG - chr8_4:48243825-48243844 None:intergenic 40.0%
GAAGACTCTCCTAATAAGTC+AGG + chr8_4:48243825-48243844 Msa1329560:CDS 40.0%
AAGTCAGGTGAAAAGTCTGA+AGG + chr8_4:48243840-48243859 Msa1329560:CDS 40.0%
TGTGAGAAAATGGATGCAAC+AGG + chr8_4:48243906-48243925 Msa1329560:CDS 40.0%
!! TGTTGGCTAGTTTCATTGTC+GGG - chr8_4:48244056-48244075 None:intergenic 40.0%
! CACCCACGTTATCATTTTGT+TGG - chr8_4:48244073-48244092 None:intergenic 40.0%
TGCTGCCAATGGAAATTCAT+TGG + chr8_4:48244261-48244280 Msa1329560:CDS 40.0%
TGGAAATTCATTGGAAGCAG+AGG + chr8_4:48244270-48244289 Msa1329560:CDS 40.0%
GATTGCTTCAGAGTTTGATG+AGG + chr8_4:48244321-48244340 Msa1329560:CDS 40.0%
TGTGAGTTAAGCCAATAGAG+CGG - chr8_4:48244405-48244424 None:intergenic 40.0%
GTATAGGGGAGATATTTGAC+AGG - chr8_4:48244491-48244510 None:intergenic 40.0%
AGACTGCTCATCTAGTATAG+GGG - chr8_4:48244505-48244524 None:intergenic 40.0%
GAAGACTGCTCATCTAGTAT+AGG - chr8_4:48244507-48244526 None:intergenic 40.0%
CTAGATGAGCAGTCTTCTTT+AGG + chr8_4:48244510-48244529 Msa1329560:intron 40.0%
AGATGAGCAGTCTTCTTTAG+GGG + chr8_4:48244512-48244531 Msa1329560:intron 40.0%
! AGAAAAGTATATGTCACGCG+TGG - chr8_4:48244569-48244588 None:intergenic 40.0%
GGACATACCTCAAAAACCAA+AGG + chr8_4:48244771-48244790 Msa1329560:CDS 40.0%
CCTTTGCAGTAGCAATATCA+CGG - chr8_4:48244826-48244845 None:intergenic 40.0%
GCAAAGACAGAAAAAAGGAG+AGG + chr8_4:48245079-48245098 Msa1329560:CDS 40.0%
AAGACAGAAAAAAGGAGAGG+TGG + chr8_4:48245082-48245101 Msa1329560:CDS 40.0%
ATGTGCAACTGCAGCATAAT+GGG - chr8_4:48245265-48245284 None:intergenic 40.0%
GCACATGATTATCAAGTTCC+TGG + chr8_4:48245279-48245298 Msa1329560:CDS 40.0%
AGTGCAACTCCTTCTAACTA+TGG + chr8_4:48245327-48245346 Msa1329560:CDS 40.0%
CAAGTCATTTCAGCAATGCT+TGG - chr8_4:48245409-48245428 None:intergenic 40.0%
GAGTTTACTACGATACCAGA+AGG + chr8_4:48245496-48245515 Msa1329560:three_prime_UTR 40.0%
TGGAGTTGGAAACCAATTGT+AGG + chr8_4:48245610-48245629 Msa1329560:three_prime_UTR 40.0%
! CTCTATAATGGAAGCTACAG+CGG - chr8_4:48243724-48243743 None:intergenic 40.0%
ATTTGGACGAGCCTCTATAA+TGG - chr8_4:48243736-48243755 None:intergenic 40.0%
!! TGATTTTGTGTATGATGGGG+AGG + chr8_4:48243773-48243792 Msa1329560:intron 40.0%
CTTATTAGGAGAGTCTTCAG+GGG - chr8_4:48243823-48243842 None:intergenic 40.0%
GACTTATTAGGAGAGTCTTC+AGG - chr8_4:48243825-48243844 None:intergenic 40.0%
GAAGACTCTCCTAATAAGTC+AGG + chr8_4:48243825-48243844 Msa1329560:CDS 40.0%
AAGTCAGGTGAAAAGTCTGA+AGG + chr8_4:48243840-48243859 Msa1329560:CDS 40.0%
TGTGAGAAAATGGATGCAAC+AGG + chr8_4:48243906-48243925 Msa1329560:CDS 40.0%
!! TGTTGGCTAGTTTCATTGTC+GGG - chr8_4:48244056-48244075 None:intergenic 40.0%
! CACCCACGTTATCATTTTGT+TGG - chr8_4:48244073-48244092 None:intergenic 40.0%
TGCTGCCAATGGAAATTCAT+TGG + chr8_4:48244261-48244280 Msa1329560:CDS 40.0%
TGGAAATTCATTGGAAGCAG+AGG + chr8_4:48244270-48244289 Msa1329560:CDS 40.0%
GATTGCTTCAGAGTTTGATG+AGG + chr8_4:48244321-48244340 Msa1329560:CDS 40.0%
TGTGAGTTAAGCCAATAGAG+CGG - chr8_4:48244405-48244424 None:intergenic 40.0%
GTATAGGGGAGATATTTGAC+AGG - chr8_4:48244491-48244510 None:intergenic 40.0%
AGACTGCTCATCTAGTATAG+GGG - chr8_4:48244505-48244524 None:intergenic 40.0%
GAAGACTGCTCATCTAGTAT+AGG - chr8_4:48244507-48244526 None:intergenic 40.0%
CTAGATGAGCAGTCTTCTTT+AGG + chr8_4:48244510-48244529 Msa1329560:intron 40.0%
AGATGAGCAGTCTTCTTTAG+GGG + chr8_4:48244512-48244531 Msa1329560:intron 40.0%
! AGAAAAGTATATGTCACGCG+TGG - chr8_4:48244569-48244588 None:intergenic 40.0%
GGACATACCTCAAAAACCAA+AGG + chr8_4:48244771-48244790 Msa1329560:CDS 40.0%
CCTTTGCAGTAGCAATATCA+CGG - chr8_4:48244826-48244845 None:intergenic 40.0%
GCAAAGACAGAAAAAAGGAG+AGG + chr8_4:48245079-48245098 Msa1329560:CDS 40.0%
AAGACAGAAAAAAGGAGAGG+TGG + chr8_4:48245082-48245101 Msa1329560:CDS 40.0%
ATGTGCAACTGCAGCATAAT+GGG - chr8_4:48245265-48245284 None:intergenic 40.0%
GCACATGATTATCAAGTTCC+TGG + chr8_4:48245279-48245298 Msa1329560:CDS 40.0%
AGTGCAACTCCTTCTAACTA+TGG + chr8_4:48245327-48245346 Msa1329560:CDS 40.0%
CAAGTCATTTCAGCAATGCT+TGG - chr8_4:48245409-48245428 None:intergenic 40.0%
GAGTTTACTACGATACCAGA+AGG + chr8_4:48245496-48245515 Msa1329560:three_prime_UTR 40.0%
TGGAGTTGGAAACCAATTGT+AGG + chr8_4:48245610-48245629 Msa1329560:three_prime_UTR 40.0%
CGCTGTAGCTTCCATTATAG+AGG + chr8_4:48243722-48243741 Msa1329560:CDS 45.0%
TGGGGAGGACAAAGATAATC+AGG + chr8_4:48243788-48243807 Msa1329560:intron 45.0%
AGGTGAAAAGTCTGAAGGTG+TGG + chr8_4:48243845-48243864 Msa1329560:CDS 45.0%
AGGCCTTCTGGATTATGTTG+TGG + chr8_4:48243926-48243945 Msa1329560:CDS 45.0%
GTGCCACAACATAATCCAGA+AGG - chr8_4:48243932-48243951 None:intergenic 45.0%
TCAAAAGGTGATCTGCACCT+GGG - chr8_4:48244169-48244188 None:intergenic 45.0%
TTCAAAAGGTGATCTGCACC+TGG - chr8_4:48244170-48244189 None:intergenic 45.0%
!! TGCTGGTTTCAGGGTTCAAA+AGG - chr8_4:48244184-48244203 None:intergenic 45.0%
TAACTTGAGCCTCCACTCAT+TGG - chr8_4:48244224-48244243 None:intergenic 45.0%
TACCTGCAGTTGCTCAGAAT+AGG + chr8_4:48244362-48244381 Msa1329560:CDS 45.0%
TGCAGTTGCTCAGAATAGGT+CGG + chr8_4:48244366-48244385 Msa1329560:CDS 45.0%
! TAACTCACAAAGTGCCAGGT+TGG + chr8_4:48244416-48244435 Msa1329560:intron 45.0%
! TTTGAGGTATGTCCTCAGGA+GGG - chr8_4:48244765-48244784 None:intergenic 45.0%
!!! TTTTGAGGTATGTCCTCAGG+AGG - chr8_4:48244766-48244785 None:intergenic 45.0%
!!! GGTTTTTGAGGTATGTCCTC+AGG - chr8_4:48244769-48244788 None:intergenic 45.0%
CCGTGATATTGCTACTGCAA+AGG + chr8_4:48244823-48244842 Msa1329560:CDS 45.0%
GAGTGTATCAAGTGGGTACT+CGG - chr8_4:48245032-48245051 None:intergenic 45.0%
AACGTCCTCAACCATCAAAG+AGG + chr8_4:48245116-48245135 Msa1329560:CDS 45.0%
AGTGGAAAATGCCTCTCGTT+AGG - chr8_4:48245148-48245167 None:intergenic 45.0%
! CATTTTCCACTCCGTTCATC+TGG + chr8_4:48245157-48245176 Msa1329560:CDS 45.0%
! AGCATAATGGGGATACCTGT+CGG - chr8_4:48245253-48245272 None:intergenic 45.0%
TGTGCAACTGCAGCATAATG+GGG - chr8_4:48245264-48245283 None:intergenic 45.0%
CATGTGCAACTGCAGCATAA+TGG - chr8_4:48245266-48245285 None:intergenic 45.0%
TTAGAAGGAGTTGCACTAGC+TGG - chr8_4:48245324-48245343 None:intergenic 45.0%
! TCACATGTAATGATGGGGTG+TGG - chr8_4:48245379-48245398 None:intergenic 45.0%
TTACTACGATACCAGAAGGC+AGG + chr8_4:48245500-48245519 Msa1329560:three_prime_UTR 45.0%
CGCTGTAGCTTCCATTATAG+AGG + chr8_4:48243722-48243741 Msa1329560:CDS 45.0%
TGGGGAGGACAAAGATAATC+AGG + chr8_4:48243788-48243807 Msa1329560:intron 45.0%
AGGTGAAAAGTCTGAAGGTG+TGG + chr8_4:48243845-48243864 Msa1329560:CDS 45.0%
AGGCCTTCTGGATTATGTTG+TGG + chr8_4:48243926-48243945 Msa1329560:CDS 45.0%
GTGCCACAACATAATCCAGA+AGG - chr8_4:48243932-48243951 None:intergenic 45.0%
TCAAAAGGTGATCTGCACCT+GGG - chr8_4:48244169-48244188 None:intergenic 45.0%
TTCAAAAGGTGATCTGCACC+TGG - chr8_4:48244170-48244189 None:intergenic 45.0%
!! TGCTGGTTTCAGGGTTCAAA+AGG - chr8_4:48244184-48244203 None:intergenic 45.0%
TAACTTGAGCCTCCACTCAT+TGG - chr8_4:48244224-48244243 None:intergenic 45.0%
TACCTGCAGTTGCTCAGAAT+AGG + chr8_4:48244362-48244381 Msa1329560:CDS 45.0%
TGCAGTTGCTCAGAATAGGT+CGG + chr8_4:48244366-48244385 Msa1329560:CDS 45.0%
! TAACTCACAAAGTGCCAGGT+TGG + chr8_4:48244416-48244435 Msa1329560:intron 45.0%
! TTTGAGGTATGTCCTCAGGA+GGG - chr8_4:48244765-48244784 None:intergenic 45.0%
!!! TTTTGAGGTATGTCCTCAGG+AGG - chr8_4:48244766-48244785 None:intergenic 45.0%
!!! GGTTTTTGAGGTATGTCCTC+AGG - chr8_4:48244769-48244788 None:intergenic 45.0%
CCGTGATATTGCTACTGCAA+AGG + chr8_4:48244823-48244842 Msa1329560:CDS 45.0%
GAGTGTATCAAGTGGGTACT+CGG - chr8_4:48245032-48245051 None:intergenic 45.0%
AACGTCCTCAACCATCAAAG+AGG + chr8_4:48245116-48245135 Msa1329560:CDS 45.0%
AGTGGAAAATGCCTCTCGTT+AGG - chr8_4:48245148-48245167 None:intergenic 45.0%
! CATTTTCCACTCCGTTCATC+TGG + chr8_4:48245157-48245176 Msa1329560:CDS 45.0%
! AGCATAATGGGGATACCTGT+CGG - chr8_4:48245253-48245272 None:intergenic 45.0%
TGTGCAACTGCAGCATAATG+GGG - chr8_4:48245264-48245283 None:intergenic 45.0%
CATGTGCAACTGCAGCATAA+TGG - chr8_4:48245266-48245285 None:intergenic 45.0%
TTAGAAGGAGTTGCACTAGC+TGG - chr8_4:48245324-48245343 None:intergenic 45.0%
! TCACATGTAATGATGGGGTG+TGG - chr8_4:48245379-48245398 None:intergenic 45.0%
TTACTACGATACCAGAAGGC+AGG + chr8_4:48245500-48245519 Msa1329560:three_prime_UTR 45.0%
ACTTACACAGAGAAAGGCGG+CGG + chr8_4:48243647-48243666 Msa1329560:CDS 50.0%
AAGGTGTGGCTACTGAGGTT+AGG + chr8_4:48243859-48243878 Msa1329560:CDS 50.0%
AATGGATGCAACAGGCCTTC+TGG + chr8_4:48243914-48243933 Msa1329560:CDS 50.0%
AAATCAAGCACCAGTCGTGC+TGG - chr8_4:48244017-48244036 None:intergenic 50.0%
CATGGCCAGCTTATTGGCAA+GGG + chr8_4:48244139-48244158 Msa1329560:CDS 50.0%
!! TTGGCTTGCTGCTGGTTTCA+GGG - chr8_4:48244193-48244212 None:intergenic 50.0%
CCACTCATTGGCAATTGCCT+TGG - chr8_4:48244212-48244231 None:intergenic 50.0%
CCAAGGCAATTGCCAATGAG+TGG + chr8_4:48244209-48244228 Msa1329560:CDS 50.0%
AGGCAATTGCCAATGAGTGG+AGG + chr8_4:48244212-48244231 Msa1329560:CDS 50.0%
AGGCTCAAGTTAGCTAGTGC+AGG + chr8_4:48244232-48244251 Msa1329560:intron 50.0%
GACCTATTCTGAGCAACTGC+AGG - chr8_4:48244367-48244386 None:intergenic 50.0%
! GGCTTAACTCACAAAGTGCC+AGG + chr8_4:48244412-48244431 Msa1329560:CDS 50.0%
ACCTGTGAAGTCTGCAGTGA+AGG + chr8_4:48244460-48244479 Msa1329560:intron 50.0%
TCCTTCACTGCAGACTTCAC+AGG - chr8_4:48244464-48244483 None:intergenic 50.0%
TTGAGGTATGTCCTCAGGAG+GGG - chr8_4:48244764-48244783 None:intergenic 50.0%
TGCAGCAAGCTCTTGTGCAT+TGG - chr8_4:48244966-48244985 None:intergenic 50.0%
! CTTGGCCTCTTTGATGGTTG+AGG - chr8_4:48245124-48245143 None:intergenic 50.0%
CTCAACCATCAAAGAGGCCA+AGG + chr8_4:48245122-48245141 Msa1329560:CDS 50.0%
TTAGGCCTTGGCCTCTTTGA+TGG - chr8_4:48245130-48245149 None:intergenic 50.0%
AAATGCCTCTCGTTAGGCCT+TGG - chr8_4:48245142-48245161 None:intergenic 50.0%
CTTCAGCTGTCGTTACTGGT+AGG + chr8_4:48245191-48245210 Msa1329560:CDS 50.0%
! TGAGTGTACATAGACTGGCC+AGG - chr8_4:48245300-48245319 None:intergenic 50.0%
CTGGCTGAGTGTACATAGAC+TGG - chr8_4:48245305-48245324 None:intergenic 50.0%
! GTAAGAGTACACCTGCCTTC+TGG - chr8_4:48245514-48245533 None:intergenic 50.0%
ACTTACACAGAGAAAGGCGG+CGG + chr8_4:48243647-48243666 Msa1329560:CDS 50.0%
AAGGTGTGGCTACTGAGGTT+AGG + chr8_4:48243859-48243878 Msa1329560:CDS 50.0%
AATGGATGCAACAGGCCTTC+TGG + chr8_4:48243914-48243933 Msa1329560:CDS 50.0%
AAATCAAGCACCAGTCGTGC+TGG - chr8_4:48244017-48244036 None:intergenic 50.0%
CATGGCCAGCTTATTGGCAA+GGG + chr8_4:48244139-48244158 Msa1329560:CDS 50.0%
!! TTGGCTTGCTGCTGGTTTCA+GGG - chr8_4:48244193-48244212 None:intergenic 50.0%
CCACTCATTGGCAATTGCCT+TGG - chr8_4:48244212-48244231 None:intergenic 50.0%
CCAAGGCAATTGCCAATGAG+TGG + chr8_4:48244209-48244228 Msa1329560:CDS 50.0%
AGGCAATTGCCAATGAGTGG+AGG + chr8_4:48244212-48244231 Msa1329560:CDS 50.0%
AGGCTCAAGTTAGCTAGTGC+AGG + chr8_4:48244232-48244251 Msa1329560:intron 50.0%
GACCTATTCTGAGCAACTGC+AGG - chr8_4:48244367-48244386 None:intergenic 50.0%
! GGCTTAACTCACAAAGTGCC+AGG + chr8_4:48244412-48244431 Msa1329560:CDS 50.0%
ACCTGTGAAGTCTGCAGTGA+AGG + chr8_4:48244460-48244479 Msa1329560:intron 50.0%
TCCTTCACTGCAGACTTCAC+AGG - chr8_4:48244464-48244483 None:intergenic 50.0%
TTGAGGTATGTCCTCAGGAG+GGG - chr8_4:48244764-48244783 None:intergenic 50.0%
TGCAGCAAGCTCTTGTGCAT+TGG - chr8_4:48244966-48244985 None:intergenic 50.0%
! CTTGGCCTCTTTGATGGTTG+AGG - chr8_4:48245124-48245143 None:intergenic 50.0%
CTCAACCATCAAAGAGGCCA+AGG + chr8_4:48245122-48245141 Msa1329560:CDS 50.0%
TTAGGCCTTGGCCTCTTTGA+TGG - chr8_4:48245130-48245149 None:intergenic 50.0%
AAATGCCTCTCGTTAGGCCT+TGG - chr8_4:48245142-48245161 None:intergenic 50.0%
CTTCAGCTGTCGTTACTGGT+AGG + chr8_4:48245191-48245210 Msa1329560:CDS 50.0%
! TGAGTGTACATAGACTGGCC+AGG - chr8_4:48245300-48245319 None:intergenic 50.0%
CTGGCTGAGTGTACATAGAC+TGG - chr8_4:48245305-48245324 None:intergenic 50.0%
! GTAAGAGTACACCTGCCTTC+TGG - chr8_4:48245514-48245533 None:intergenic 50.0%
! GTCTGAAGGTGTGGCTACTG+AGG + chr8_4:48243854-48243873 Msa1329560:CDS 55.0%
TGCAACAGATCCAGCACGAC+TGG + chr8_4:48244004-48244023 Msa1329560:intron 55.0%
GGATTTGCGCTTGCCCTGAA+GGG - chr8_4:48244099-48244118 None:intergenic 55.0%
AGGATTTGCGCTTGCCCTGA+AGG - chr8_4:48244100-48244119 None:intergenic 55.0%
GGAAGCCATGGCCAGCTTAT+TGG + chr8_4:48244133-48244152 Msa1329560:CDS 55.0%
CCTTGCCAATAAGCTGGCCA+TGG - chr8_4:48244141-48244160 None:intergenic 55.0%
CCATGGCCAGCTTATTGGCA+AGG + chr8_4:48244138-48244157 Msa1329560:CDS 55.0%
GTCAGCCCTTGCCAATAAGC+TGG - chr8_4:48244147-48244166 None:intergenic 55.0%
TTATTGGCAAGGGCTGACCC+AGG + chr8_4:48244149-48244168 Msa1329560:CDS 55.0%
!! CTTGGCTTGCTGCTGGTTTC+AGG - chr8_4:48244194-48244213 None:intergenic 55.0%
CTGAAACCAGCAGCAAGCCA+AGG + chr8_4:48244192-48244211 Msa1329560:CDS 55.0%
!! CAATTGCCTTGGCTTGCTGC+TGG - chr8_4:48244201-48244220 None:intergenic 55.0%
!! GCAGGCATTGATGCTGCCAA+TGG + chr8_4:48244250-48244269 Msa1329560:intron 55.0%
ATGTCCTCAGGAGGGGAACA+GGG - chr8_4:48244757-48244776 None:intergenic 55.0%
TATGTCCTCAGGAGGGGAAC+AGG - chr8_4:48244758-48244777 None:intergenic 55.0%
CAGCACCACGACCAGATGAA+CGG - chr8_4:48245171-48245190 None:intergenic 55.0%
GCTGCTTCAGCTGTCGTTAC+TGG + chr8_4:48245187-48245206 Msa1329560:CDS 55.0%
AGCTGTCGTTACTGGTAGGC+AGG + chr8_4:48245195-48245214 Msa1329560:CDS 55.0%
GCATATGCTGTCCTAGCAGG+CGG - chr8_4:48245222-48245241 None:intergenic 55.0%
CCTGCATATGCTGTCCTAGC+AGG - chr8_4:48245225-48245244 None:intergenic 55.0%
CCTGCTAGGACAGCATATGC+AGG + chr8_4:48245222-48245241 Msa1329560:CDS 55.0%
CATATGCAGGAACTGCCGAC+AGG + chr8_4:48245235-48245254 Msa1329560:CDS 55.0%
! GTCTGAAGGTGTGGCTACTG+AGG + chr8_4:48243854-48243873 Msa1329560:CDS 55.0%
TGCAACAGATCCAGCACGAC+TGG + chr8_4:48244004-48244023 Msa1329560:intron 55.0%
GGATTTGCGCTTGCCCTGAA+GGG - chr8_4:48244099-48244118 None:intergenic 55.0%
AGGATTTGCGCTTGCCCTGA+AGG - chr8_4:48244100-48244119 None:intergenic 55.0%
GGAAGCCATGGCCAGCTTAT+TGG + chr8_4:48244133-48244152 Msa1329560:CDS 55.0%
CCTTGCCAATAAGCTGGCCA+TGG - chr8_4:48244141-48244160 None:intergenic 55.0%
CCATGGCCAGCTTATTGGCA+AGG + chr8_4:48244138-48244157 Msa1329560:CDS 55.0%
GTCAGCCCTTGCCAATAAGC+TGG - chr8_4:48244147-48244166 None:intergenic 55.0%
TTATTGGCAAGGGCTGACCC+AGG + chr8_4:48244149-48244168 Msa1329560:CDS 55.0%
!! CTTGGCTTGCTGCTGGTTTC+AGG - chr8_4:48244194-48244213 None:intergenic 55.0%
CTGAAACCAGCAGCAAGCCA+AGG + chr8_4:48244192-48244211 Msa1329560:CDS 55.0%
!! CAATTGCCTTGGCTTGCTGC+TGG - chr8_4:48244201-48244220 None:intergenic 55.0%
!! GCAGGCATTGATGCTGCCAA+TGG + chr8_4:48244250-48244269 Msa1329560:intron 55.0%
ATGTCCTCAGGAGGGGAACA+GGG - chr8_4:48244757-48244776 None:intergenic 55.0%
TATGTCCTCAGGAGGGGAAC+AGG - chr8_4:48244758-48244777 None:intergenic 55.0%
CAGCACCACGACCAGATGAA+CGG - chr8_4:48245171-48245190 None:intergenic 55.0%
GCTGCTTCAGCTGTCGTTAC+TGG + chr8_4:48245187-48245206 Msa1329560:CDS 55.0%
AGCTGTCGTTACTGGTAGGC+AGG + chr8_4:48245195-48245214 Msa1329560:CDS 55.0%
GCATATGCTGTCCTAGCAGG+CGG - chr8_4:48245222-48245241 None:intergenic 55.0%
CCTGCATATGCTGTCCTAGC+AGG - chr8_4:48245225-48245244 None:intergenic 55.0%
CCTGCTAGGACAGCATATGC+AGG + chr8_4:48245222-48245241 Msa1329560:CDS 55.0%
CATATGCAGGAACTGCCGAC+AGG + chr8_4:48245235-48245254 Msa1329560:CDS 55.0%
! TAACGTGGGTGCTGCCCTTC+AGG + chr8_4:48244082-48244101 Msa1329560:CDS 60.0%
! AACGTGGGTGCTGCCCTTCA+GGG + chr8_4:48244083-48244102 Msa1329560:CDS 60.0%
CCAATAGAGCGGCAGAGCTC+AGG - chr8_4:48244394-48244413 None:intergenic 60.0%
CCTGAGCTCTGCCGCTCTAT+TGG + chr8_4:48244391-48244410 Msa1329560:CDS 60.0%
TGTCCTCAGGAGGGGAACAG+GGG - chr8_4:48244756-48244775 None:intergenic 60.0%
AGAGGCCAAGGCCTAACGAG+AGG + chr8_4:48245134-48245153 Msa1329560:CDS 60.0%
CCACGACCAGATGAACGGAG+TGG - chr8_4:48245166-48245185 None:intergenic 60.0%
CCACTCCGTTCATCTGGTCG+TGG + chr8_4:48245163-48245182 Msa1329560:CDS 60.0%
! TAACGTGGGTGCTGCCCTTC+AGG + chr8_4:48244082-48244101 Msa1329560:CDS 60.0%
! AACGTGGGTGCTGCCCTTCA+GGG + chr8_4:48244083-48244102 Msa1329560:CDS 60.0%
CCAATAGAGCGGCAGAGCTC+AGG - chr8_4:48244394-48244413 None:intergenic 60.0%
CCTGAGCTCTGCCGCTCTAT+TGG + chr8_4:48244391-48244410 Msa1329560:CDS 60.0%
TGTCCTCAGGAGGGGAACAG+GGG - chr8_4:48244756-48244775 None:intergenic 60.0%
AGAGGCCAAGGCCTAACGAG+AGG + chr8_4:48245134-48245153 Msa1329560:CDS 60.0%
CCACGACCAGATGAACGGAG+TGG - chr8_4:48245166-48245185 None:intergenic 60.0%
CCACTCCGTTCATCTGGTCG+TGG + chr8_4:48245163-48245182 Msa1329560:CDS 60.0%
TTCCCCCTGTTCCCCTCCTG+AGG + chr8_4:48244750-48244769 Msa1329560:CDS 65.0%
GTCCTCAGGAGGGGAACAGG+GGG - chr8_4:48244755-48244774 None:intergenic 65.0%
TTCCCCCTGTTCCCCTCCTG+AGG + chr8_4:48244750-48244769 Msa1329560:CDS 65.0%
GTCCTCAGGAGGGGAACAGG+GGG - chr8_4:48244755-48244774 None:intergenic 65.0%
GGTAGGCAGGTCCGCCTGCT+AGG + chr8_4:48245208-48245227 Msa1329560:CDS 70.0%
GGTAGGCAGGTCCGCCTGCT+AGG + chr8_4:48245208-48245227 Msa1329560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 48243636 48245637 48243636 ID=Msa1329560;Name=Msa1329560
chr8_4 mRNA 48243636 48245637 48243636 ID=Msa1329560-mRNA-1;Parent=Msa1329560;Name=Msa1329560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.4|0.33|1|0.4|0.5|6|277|441
chr8_4 exon 48243636 48243779 48243636 ID=Msa1329560-mRNA-1:exon:13845;Parent=Msa1329560-mRNA-1
chr8_4 exon 48243810 48244002 48243810 ID=Msa1329560-mRNA-1:exon:13846;Parent=Msa1329560-mRNA-1
chr8_4 exon 48244012 48244239 48244012 ID=Msa1329560-mRNA-1:exon:13847;Parent=Msa1329560-mRNA-1
chr8_4 exon 48244254 48244433 48244254 ID=Msa1329560-mRNA-1:exon:13848;Parent=Msa1329560-mRNA-1
chr8_4 exon 48244669 48244844 48244669 ID=Msa1329560-mRNA-1:exon:13849;Parent=Msa1329560-mRNA-1
chr8_4 exon 48244956 48245637 48244956 ID=Msa1329560-mRNA-1:exon:13850;Parent=Msa1329560-mRNA-1
chr8_4 CDS 48243636 48243779 48243636 ID=Msa1329560-mRNA-1:cds;Parent=Msa1329560-mRNA-1
chr8_4 CDS 48243810 48244002 48243810 ID=Msa1329560-mRNA-1:cds;Parent=Msa1329560-mRNA-1
chr8_4 CDS 48244012 48244239 48244012 ID=Msa1329560-mRNA-1:cds;Parent=Msa1329560-mRNA-1
chr8_4 CDS 48244254 48244433 48244254 ID=Msa1329560-mRNA-1:cds;Parent=Msa1329560-mRNA-1
chr8_4 CDS 48244669 48244844 48244669 ID=Msa1329560-mRNA-1:cds;Parent=Msa1329560-mRNA-1
chr8_4 CDS 48244956 48245360 48244956 ID=Msa1329560-mRNA-1:cds;Parent=Msa1329560-mRNA-1
chr8_4 three_prime_UTR 48245361 48245637 48245361 ID=Msa1329560-mRNA-1:three_prime_utr;Parent=Msa1329560-mRNA-1
Gene Sequence

>Msa1329560

ATGAATACATTACTTACACAGAGAAAGGCGGCGGTTACTTCAAAAGAACAAGATCTATTAGATCGTTTGCAGGATCTTAAAGACGCCGCTGTAGCTTCCATTATAGAGGCTCGTCCAAATGACGTGACTACAACTTTTGATTTTGTAAGCATCTCCCCTGAAGACTCTCCTAATAAGTCAGGTGAAAAGTCTGAAGGTGTGGCTACTGAGGTTAGGCCACATCTAGACTTGAAAGTTTATTGTGAGAAAATGGATGCAACAGGCCTTCTGGATTATGTTGTGGCACATAAGAAAAAAGTATCTGAATTTCGTGAAGAAGTTTCTGTTGCATTAGAAAATCCAGCACGACTGGTGCTTGATTTACTATTGGGTTTTTATCCCGACAATGAAACTAGCCAACAAAATGATAACGTGGGTGCTGCCCTTCAGGGCAAGCGCAAATCCTGTATTCTAATTTTGGAAGCCATGGCCAGCTTATTGGCAAGGGCTGACCCAGGTGCAGATCACCTTTTGAACCCTGAAACCAGCAGCAAGCCAAGGCAATTGCCAATGAGTGGAGGCTCAAGCATTGATGCTGCCAATGGAAATTCATTGGAAGCAGAGGCATTCTTGCAGCTTCTTTCTACTTATAGGATTGCTTCAGAGTTTGATGAGGAAGAACTCTGCAAGCTTGTACCTGCAGTTGCTCAGAATAGGTCGGCACCTGAGCTCTGCCGCTCTATTGGCTTAACTCACAAAGTGCCAGCTCTTATCGAAGCTTTAATCAACAATGGGAAACACATTGCAGCTGTACACTTTGTTCAACTCTTCAAGCTTCAAGAAAGCTTTCCCCCTGTTCCCCTCCTGAGGACATACCTCAAAAACCAAAGGAGAAATTCACAAGTAAAGGCTGATAATGTCCGTGATATTGCTACTGCAAAGATTGATGCCAATGCACAAGAGCTTGCTGCACTGAGAATTGTAATCAAGTGCATTGAAGAATATGAGTTCGAATCCGAGTACCCACTTGATACACTCCATAAAAGGGTTCATCAACTAGAGAAAGCAAAGACAGAAAAAAGGAGAGGTGGAGATTTTTTTAAACGTCCTCAACCATCAAAGAGGCCAAGGCCTAACGAGAGGCATTTTCCACTCCGTTCATCTGGTCGTGGTGCTGCTTCAGCTGTCGTTACTGGTAGGCAGGTCCGCCTGCTAGGACAGCATATGCAGGAACTGCCGACAGGTATCCCCATTATGCTGCAGTTGCACATGATTATCAAGTTCCTGGCCAGTCTATGTACACTCAGCCAGCTAGTGCAACTCCTTCTAACTATGGTCGTTATATAG
Protein sequence

>Msa1329560

MNTLLTQRKAAVTSKEQDLLDRLQDLKDAAVASIIEARPNDVTTTFDFVSISPEDSPNKSGEKSEGVATEVRPHLDLKVYCEKMDATGLLDYVVAHKKKVSEFREEVSVALENPARLVLDLLLGFYPDNETSQQNDNVGAALQGKRKSCILILEAMASLLARADPGADHLLNPETSSKPRQLPMSGGSSIDAANGNSLEAEAFLQLLSTYRIASEFDEEELCKLVPAVAQNRSAPELCRSIGLTHKVPALIEALINNGKHIAAVHFVQLFKLQESFPPVPLLRTYLKNQRRNSQVKADNVRDIATAKIDANAQELAALRIVIKCIEEYEFESEYPLDTLHKRVHQLEKAKTEKRRGGDFFKRPQPSKRPRPNERHFPLRSSGRGAASAVVTGRQVRLLGQHMQELPTGIPIMLQLHMIIKFLASLCTLSQLVQLLLTMVVI*