AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331860 MtrunA17_Chr4g0063871 99.123 114 1 0 1 114 1 114 4.41e-82 235
Msa1331860 MtrunA17_Chr2g0333071 39.252 107 61 3 11 114 8 113 9.37e-24 87.8
Msa1331860 MtrunA17_Chr3g0123851 39.286 84 38 2 43 114 39 121 7.93e-14 62.8
Msa1331860 MtrunA17_Chr4g0019101 37.755 98 45 4 19 114 79 162 2.92e-13 62.4
Msa1331860 MtrunA17_Chr5g0432501 32.710 107 58 3 11 114 41 136 4.64e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331860 AT1G80133.1 29.661 118 60 3 1 114 1 99 1.55e-11 56.6

Find 46 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTATTTGCTTCTAATTT+AGG 0.129449 8_4:-51561791 Msa1331860:intron
CATTGGTTGGAGGGGCTTAT+TGG 0.151048 8_4:-51561140 Msa1331860:three_prime_UTR
GTTTGGAATTAACTGCTATT+TGG 0.191429 8_4:+51561220 None:intergenic
AAAGACATAGTTGTTATATT+TGG 0.193293 8_4:+51561244 None:intergenic
AAAGAAATGAGAAGAAGTTT+TGG 0.239549 8_4:+51561908 None:intergenic
TCTTCTAGGTTCTAGCTATT+TGG 0.246087 8_4:-51562034 Msa1331860:five_prime_UTR
AGAACCTAGAAGAATTAATT+TGG 0.251989 8_4:+51562044 None:intergenic
AACGCCAAATTAATTCTTCT+AGG 0.270101 8_4:-51562048 Msa1331860:five_prime_UTR
AATTTCTAGTTAAATTTGTT+TGG 0.291501 8_4:+51561203 None:intergenic
ATTGGTTGGAGGGGCTTATT+GGG 0.330391 8_4:-51561139 Msa1331860:three_prime_UTR
TAGCTATATAACAACTTTCA+AGG 0.370965 8_4:+51561386 None:intergenic
TGGCTATATGCAATAGTAGT+AGG 0.390708 8_4:+51561951 None:intergenic
ATGCCAATGCCACTATATCT+TGG 0.404751 8_4:+51561339 None:intergenic
TTTGTAGTAATAGTATGAAA+TGG 0.410391 8_4:-51561269 Msa1331860:three_prime_UTR
GAAGAAATATCATAGAAGTA+AGG 0.411774 8_4:-51561618 Msa1331860:CDS
AATCAAAAGAAATCAGTATT+GGG 0.417315 8_4:-51561587 Msa1331860:CDS
TTTGGGAGAAAGAGAAAGGA+AGG 0.446803 8_4:+51561926 None:intergenic
TGCCAATGCCACTATATCTT+GGG 0.461271 8_4:+51561340 None:intergenic
AAATCAAAAGAAATCAGTAT+TGG 0.464047 8_4:-51561588 Msa1331860:CDS
ATTTCTCCTCATCACAAAGT+TGG 0.472056 8_4:-51561500 Msa1331860:CDS
ATAATTTCAAAAGTTAGCAT+AGG 0.495740 8_4:-51562190 Msa1331860:five_prime_UTR
TGCCCAAGATATAGTGGCAT+TGG 0.497331 8_4:-51561342 Msa1331860:three_prime_UTR
GTGGAGTGGCAAACATTGGT+TGG 0.510429 8_4:-51561153 Msa1331860:three_prime_UTR
AAGAAATATCATAGAAGTAA+GGG 0.517623 8_4:-51561617 Msa1331860:CDS
AAGCATTTGTTAACACACCT+TGG 0.520904 8_4:+51561554 None:intergenic
CTTGAATTGCAGACCTTGCA+TGG 0.526230 8_4:-51561534 Msa1331860:CDS
TTAGTTCAAATTTGGTGGAG+TGG 0.543403 8_4:-51561167 Msa1331860:three_prime_UTR
TAATTTCAAAAGTTAGCATA+GGG 0.544735 8_4:-51562189 Msa1331860:five_prime_UTR
GAGTGGCAAACATTGGTTGG+AGG 0.548658 8_4:-51561150 Msa1331860:three_prime_UTR
GGCTATATGCAATAGTAGTA+GGG 0.553625 8_4:+51561952 None:intergenic
AGTGGCAAACATTGGTTGGA+GGG 0.556976 8_4:-51561149 Msa1331860:three_prime_UTR
AGGGATACTATCTTATGTCA+TGG 0.560784 8_4:-51561439 Msa1331860:CDS
CATTTGTTAACACACCTTGG+AGG 0.562627 8_4:+51561557 None:intergenic
TGTATGATGACAAAAGAAAG+AGG 0.563682 8_4:-51562228 Msa1331860:five_prime_UTR
ATATTGTGCCCAAGATATAG+TGG 0.570965 8_4:-51561348 Msa1331860:three_prime_UTR
TTCAGCCAGCAAAAGATGAA+AGG 0.571863 8_4:-51562159 Msa1331860:five_prime_UTR
GAGAAAGAGAAAGGAAGGAA+TGG 0.578947 8_4:+51561931 None:intergenic
GTGGCAAACATTGGTTGGAG+GGG 0.580609 8_4:-51561148 Msa1331860:three_prime_UTR
TCATACTATTACTACAAACA+AGG 0.614003 8_4:+51561274 None:intergenic
ATAACTAAAGTAGCCATGCA+AGG 0.616275 8_4:+51561521 None:intergenic
TTTGGTGGAGTGGCAAACAT+TGG 0.627477 8_4:-51561157 Msa1331860:three_prime_UTR
GTATGATGACAAAAGAAAGA+GGG 0.634261 8_4:-51562227 Msa1331860:five_prime_UTR
ATTTGACCAACTTTGTGATG+AGG 0.636465 8_4:+51561494 None:intergenic
TAGGTAAGCTCACAGAGTTG+AGG 0.644476 8_4:+51562102 None:intergenic
TATTGGGATCAAGACCTCCA+AGG 0.671664 8_4:-51561571 Msa1331860:CDS
ATGTCATGGAAATGCAAGTG+TGG 0.695585 8_4:-51561425 Msa1331860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATAGCTATAAATTTTT+GGG - chr8_4:51561976-51561995 Msa1331860:five_prime_UTR 10.0%
!!! TTATATAGCTATAAATTTTT+GGG - chr8_4:51561976-51561995 Msa1331860:five_prime_UTR 10.0%
!!! GTTATATAGCTATAAATTTT+TGG - chr8_4:51561975-51561994 Msa1331860:five_prime_UTR 15.0%
!!! ATCTTTTAAACTATATACAT+AGG + chr8_4:51562038-51562057 None:intergenic 15.0%
!!! AATTTCTAGTTAAATTTGTT+TGG + chr8_4:51562150-51562169 None:intergenic 15.0%
!!! GTTATATAGCTATAAATTTT+TGG - chr8_4:51561975-51561994 Msa1331860:five_prime_UTR 15.0%
!!! ATCTTTTAAACTATATACAT+AGG + chr8_4:51562038-51562057 None:intergenic 15.0%
!!! AATTTCTAGTTAAATTTGTT+TGG + chr8_4:51562150-51562169 None:intergenic 15.0%
!! ATAATTTCAAAAGTTAGCAT+AGG - chr8_4:51561160-51561179 Msa1331860:three_prime_UTR 20.0%
!! TAATTTCAAAAGTTAGCATA+GGG - chr8_4:51561161-51561180 Msa1331860:three_prime_UTR 20.0%
!!! ACTTTATTTGCTTCTAATTT+AGG - chr8_4:51561559-51561578 Msa1331860:CDS 20.0%
!! AAGAAATATCATAGAAGTAA+GGG - chr8_4:51561733-51561752 Msa1331860:intron 20.0%
!! AAATCAAAAGAAATCAGTAT+TGG - chr8_4:51561762-51561781 Msa1331860:intron 20.0%
!! AATCAAAAGAAATCAGTATT+GGG - chr8_4:51561763-51561782 Msa1331860:intron 20.0%
!! TTTGTAGTAATAGTATGAAA+TGG - chr8_4:51562081-51562100 Msa1331860:five_prime_UTR 20.0%
!! AAAGACATAGTTGTTATATT+TGG + chr8_4:51562109-51562128 None:intergenic 20.0%
!! ATAATTTCAAAAGTTAGCAT+AGG - chr8_4:51561160-51561179 Msa1331860:three_prime_UTR 20.0%
!! TAATTTCAAAAGTTAGCATA+GGG - chr8_4:51561161-51561180 Msa1331860:three_prime_UTR 20.0%
!!! ACTTTATTTGCTTCTAATTT+AGG - chr8_4:51561559-51561578 Msa1331860:CDS 20.0%
!! AAGAAATATCATAGAAGTAA+GGG - chr8_4:51561733-51561752 Msa1331860:intron 20.0%
!! AAATCAAAAGAAATCAGTAT+TGG - chr8_4:51561762-51561781 Msa1331860:intron 20.0%
!! AATCAAAAGAAATCAGTATT+GGG - chr8_4:51561763-51561782 Msa1331860:intron 20.0%
!! TTTGTAGTAATAGTATGAAA+TGG - chr8_4:51562081-51562100 Msa1331860:five_prime_UTR 20.0%
!! AAAGACATAGTTGTTATATT+TGG + chr8_4:51562109-51562128 None:intergenic 20.0%
!!! TTTTAAGAGAAATAGAAGCT+AGG + chr8_4:51561270-51561289 None:intergenic 25.0%
! AGAACCTAGAAGAATTAATT+TGG + chr8_4:51561309-51561328 None:intergenic 25.0%
!! AAGAAATGAGAAGAAGTTTT+GGG + chr8_4:51561444-51561463 None:intergenic 25.0%
!! AAAGAAATGAGAAGAAGTTT+TGG + chr8_4:51561445-51561464 None:intergenic 25.0%
!! TTATACCGTTTTATATCTCT+TGG - chr8_4:51561654-51561673 Msa1331860:intron 25.0%
! TTAGACCAAGAGATATAAAA+CGG + chr8_4:51561662-51561681 None:intergenic 25.0%
! GAAGAAATATCATAGAAGTA+AGG - chr8_4:51561732-51561751 Msa1331860:intron 25.0%
! TAGCTATATAACAACTTTCA+AGG + chr8_4:51561967-51561986 None:intergenic 25.0%
! TCATACTATTACTACAAACA+AGG + chr8_4:51562079-51562098 None:intergenic 25.0%
!!! GTTTGCTTTTAGTTCAAATT+TGG - chr8_4:51562175-51562194 Msa1331860:five_prime_UTR 25.0%
!!! TTTTAAGAGAAATAGAAGCT+AGG + chr8_4:51561270-51561289 None:intergenic 25.0%
! AGAACCTAGAAGAATTAATT+TGG + chr8_4:51561309-51561328 None:intergenic 25.0%
!! AAGAAATGAGAAGAAGTTTT+GGG + chr8_4:51561444-51561463 None:intergenic 25.0%
!! AAAGAAATGAGAAGAAGTTT+TGG + chr8_4:51561445-51561464 None:intergenic 25.0%
!! TTATACCGTTTTATATCTCT+TGG - chr8_4:51561654-51561673 Msa1331860:intron 25.0%
! TTAGACCAAGAGATATAAAA+CGG + chr8_4:51561662-51561681 None:intergenic 25.0%
! GAAGAAATATCATAGAAGTA+AGG - chr8_4:51561732-51561751 Msa1331860:intron 25.0%
! TAGCTATATAACAACTTTCA+AGG + chr8_4:51561967-51561986 None:intergenic 25.0%
! TCATACTATTACTACAAACA+AGG + chr8_4:51562079-51562098 None:intergenic 25.0%
!!! GTTTGCTTTTAGTTCAAATT+TGG - chr8_4:51562175-51562194 Msa1331860:five_prime_UTR 25.0%
! CTTTCTTTTGTCATCATACA+AGG + chr8_4:51561122-51561141 None:intergenic 30.0%
TGTATGATGACAAAAGAAAG+AGG - chr8_4:51561122-51561141 Msa1331860:three_prime_UTR 30.0%
GTATGATGACAAAAGAAAGA+GGG - chr8_4:51561123-51561142 Msa1331860:three_prime_UTR 30.0%
AACGCCAAATTAATTCTTCT+AGG - chr8_4:51561302-51561321 Msa1331860:three_prime_UTR 30.0%
!! TGCATCTCATCAAGTTTTAA+GGG + chr8_4:51561344-51561363 None:intergenic 30.0%
! ATGCATCTCATCAAGTTTTA+AGG + chr8_4:51561345-51561364 None:intergenic 30.0%
!!! CTTTCTCTTTTTTACACTCA+TGG - chr8_4:51561471-51561490 Msa1331860:CDS 30.0%
!! ATTGCTTTTCATTGAACAGA+AGG - chr8_4:51561697-51561716 Msa1331860:intron 30.0%
!! TTGCTTTTCATTGAACAGAA+GGG - chr8_4:51561698-51561717 Msa1331860:intron 30.0%
AATAACAGCTGAAAAAGATG+AGG - chr8_4:51561891-51561910 Msa1331860:five_prime_UTR 30.0%
ATAACAGCTGAAAAAGATGA+GGG - chr8_4:51561892-51561911 Msa1331860:five_prime_UTR 30.0%
! GTTTGGAATTAACTGCTATT+TGG + chr8_4:51562133-51562152 None:intergenic 30.0%
!!! TGCTTTTAGTTCAAATTTGG+TGG - chr8_4:51562178-51562197 Msa1331860:five_prime_UTR 30.0%
! CTTTCTTTTGTCATCATACA+AGG + chr8_4:51561122-51561141 None:intergenic 30.0%
TGTATGATGACAAAAGAAAG+AGG - chr8_4:51561122-51561141 Msa1331860:three_prime_UTR 30.0%
GTATGATGACAAAAGAAAGA+GGG - chr8_4:51561123-51561142 Msa1331860:three_prime_UTR 30.0%
AACGCCAAATTAATTCTTCT+AGG - chr8_4:51561302-51561321 Msa1331860:three_prime_UTR 30.0%
!! TGCATCTCATCAAGTTTTAA+GGG + chr8_4:51561344-51561363 None:intergenic 30.0%
! ATGCATCTCATCAAGTTTTA+AGG + chr8_4:51561345-51561364 None:intergenic 30.0%
!!! CTTTCTCTTTTTTACACTCA+TGG - chr8_4:51561471-51561490 Msa1331860:CDS 30.0%
!! ATTGCTTTTCATTGAACAGA+AGG - chr8_4:51561697-51561716 Msa1331860:intron 30.0%
!! TTGCTTTTCATTGAACAGAA+GGG - chr8_4:51561698-51561717 Msa1331860:intron 30.0%
AATAACAGCTGAAAAAGATG+AGG - chr8_4:51561891-51561910 Msa1331860:five_prime_UTR 30.0%
ATAACAGCTGAAAAAGATGA+GGG - chr8_4:51561892-51561911 Msa1331860:five_prime_UTR 30.0%
! GTTTGGAATTAACTGCTATT+TGG + chr8_4:51562133-51562152 None:intergenic 30.0%
!!! TGCTTTTAGTTCAAATTTGG+TGG - chr8_4:51562178-51562197 Msa1331860:five_prime_UTR 30.0%
! TTTTGTCATCATACAAGGAG+TGG + chr8_4:51561117-51561136 None:intergenic 35.0%
! AGTTTCCTTTCATCTTTTGC+TGG + chr8_4:51561199-51561218 None:intergenic 35.0%
! TCTTCTAGGTTCTAGCTATT+TGG - chr8_4:51561316-51561335 Msa1331860:three_prime_UTR 35.0%
GGCTATATGCAATAGTAGTA+GGG + chr8_4:51561401-51561420 None:intergenic 35.0%
TGGCTATATGCAATAGTAGT+AGG + chr8_4:51561402-51561421 None:intergenic 35.0%
!!! AAGTTTTGGGAGAAAGAGAA+AGG + chr8_4:51561431-51561450 None:intergenic 35.0%
! AGTCTGCTGTGGTATATTTT+TGG + chr8_4:51561502-51561521 None:intergenic 35.0%
! AAGCATTTGTTAACACACCT+TGG + chr8_4:51561799-51561818 None:intergenic 35.0%
ATAACTAAAGTAGCCATGCA+AGG + chr8_4:51561832-51561851 None:intergenic 35.0%
ATTTCTCCTCATCACAAAGT+TGG - chr8_4:51561850-51561869 Msa1331860:CDS 35.0%
ATTTGACCAACTTTGTGATG+AGG + chr8_4:51561859-51561878 None:intergenic 35.0%
AGGGATACTATCTTATGTCA+TGG - chr8_4:51561911-51561930 Msa1331860:five_prime_UTR 35.0%
ATATTGTGCCCAAGATATAG+TGG - chr8_4:51562002-51562021 Msa1331860:five_prime_UTR 35.0%
! TTAGTTCAAATTTGGTGGAG+TGG - chr8_4:51562183-51562202 Msa1331860:five_prime_UTR 35.0%
! TTTTGTCATCATACAAGGAG+TGG + chr8_4:51561117-51561136 None:intergenic 35.0%
! AGTTTCCTTTCATCTTTTGC+TGG + chr8_4:51561199-51561218 None:intergenic 35.0%
! TCTTCTAGGTTCTAGCTATT+TGG - chr8_4:51561316-51561335 Msa1331860:three_prime_UTR 35.0%
GGCTATATGCAATAGTAGTA+GGG + chr8_4:51561401-51561420 None:intergenic 35.0%
TGGCTATATGCAATAGTAGT+AGG + chr8_4:51561402-51561421 None:intergenic 35.0%
!!! AAGTTTTGGGAGAAAGAGAA+AGG + chr8_4:51561431-51561450 None:intergenic 35.0%
! AGTCTGCTGTGGTATATTTT+TGG + chr8_4:51561502-51561521 None:intergenic 35.0%
! AAGCATTTGTTAACACACCT+TGG + chr8_4:51561799-51561818 None:intergenic 35.0%
ATAACTAAAGTAGCCATGCA+AGG + chr8_4:51561832-51561851 None:intergenic 35.0%
ATTTCTCCTCATCACAAAGT+TGG - chr8_4:51561850-51561869 Msa1331860:CDS 35.0%
ATTTGACCAACTTTGTGATG+AGG + chr8_4:51561859-51561878 None:intergenic 35.0%
AGGGATACTATCTTATGTCA+TGG - chr8_4:51561911-51561930 Msa1331860:five_prime_UTR 35.0%
ATATTGTGCCCAAGATATAG+TGG - chr8_4:51562002-51562021 Msa1331860:five_prime_UTR 35.0%
! TTAGTTCAAATTTGGTGGAG+TGG - chr8_4:51562183-51562202 Msa1331860:five_prime_UTR 35.0%
TTCAGCCAGCAAAAGATGAA+AGG - chr8_4:51561191-51561210 Msa1331860:three_prime_UTR 40.0%
! TCACAGAGTTGAGGTTTTCA+GGG + chr8_4:51561242-51561261 None:intergenic 40.0%
GAGAAAGAGAAAGGAAGGAA+TGG + chr8_4:51561422-51561441 None:intergenic 40.0%
TTTGGGAGAAAGAGAAAGGA+AGG + chr8_4:51561427-51561446 None:intergenic 40.0%
!!! CTGAAGTTTTTAGTCTGCTG+TGG + chr8_4:51561513-51561532 None:intergenic 40.0%
! CATTTGTTAACACACCTTGG+AGG + chr8_4:51561796-51561815 None:intergenic 40.0%
ATGTCATGGAAATGCAAGTG+TGG - chr8_4:51561925-51561944 Msa1331860:five_prime_UTR 40.0%
TGCCAATGCCACTATATCTT+GGG + chr8_4:51562013-51562032 None:intergenic 40.0%
ATGCCAATGCCACTATATCT+TGG + chr8_4:51562014-51562033 None:intergenic 40.0%
TTCAGCCAGCAAAAGATGAA+AGG - chr8_4:51561191-51561210 Msa1331860:three_prime_UTR 40.0%
! TCACAGAGTTGAGGTTTTCA+GGG + chr8_4:51561242-51561261 None:intergenic 40.0%
GAGAAAGAGAAAGGAAGGAA+TGG + chr8_4:51561422-51561441 None:intergenic 40.0%
TTTGGGAGAAAGAGAAAGGA+AGG + chr8_4:51561427-51561446 None:intergenic 40.0%
!!! CTGAAGTTTTTAGTCTGCTG+TGG + chr8_4:51561513-51561532 None:intergenic 40.0%
! CATTTGTTAACACACCTTGG+AGG + chr8_4:51561796-51561815 None:intergenic 40.0%
ATGTCATGGAAATGCAAGTG+TGG - chr8_4:51561925-51561944 Msa1331860:five_prime_UTR 40.0%
TGCCAATGCCACTATATCTT+GGG + chr8_4:51562013-51562032 None:intergenic 40.0%
ATGCCAATGCCACTATATCT+TGG + chr8_4:51562014-51562033 None:intergenic 40.0%
! CTCACAGAGTTGAGGTTTTC+AGG + chr8_4:51561243-51561262 None:intergenic 45.0%
TAGGTAAGCTCACAGAGTTG+AGG + chr8_4:51561251-51561270 None:intergenic 45.0%
TATTGGGATCAAGACCTCCA+AGG - chr8_4:51561779-51561798 Msa1331860:intron 45.0%
CTTGAATTGCAGACCTTGCA+TGG - chr8_4:51561816-51561835 Msa1331860:CDS 45.0%
TGCCCAAGATATAGTGGCAT+TGG - chr8_4:51562008-51562027 Msa1331860:five_prime_UTR 45.0%
TTTGGTGGAGTGGCAAACAT+TGG - chr8_4:51562193-51562212 Msa1331860:five_prime_UTR 45.0%
! AGTGGCAAACATTGGTTGGA+GGG - chr8_4:51562201-51562220 Msa1331860:five_prime_UTR 45.0%
ATTGGTTGGAGGGGCTTATT+GGG - chr8_4:51562211-51562230 Msa1331860:five_prime_UTR 45.0%
! CTCACAGAGTTGAGGTTTTC+AGG + chr8_4:51561243-51561262 None:intergenic 45.0%
TAGGTAAGCTCACAGAGTTG+AGG + chr8_4:51561251-51561270 None:intergenic 45.0%
TATTGGGATCAAGACCTCCA+AGG - chr8_4:51561779-51561798 Msa1331860:intron 45.0%
CTTGAATTGCAGACCTTGCA+TGG - chr8_4:51561816-51561835 Msa1331860:CDS 45.0%
TGCCCAAGATATAGTGGCAT+TGG - chr8_4:51562008-51562027 Msa1331860:five_prime_UTR 45.0%
TTTGGTGGAGTGGCAAACAT+TGG - chr8_4:51562193-51562212 Msa1331860:five_prime_UTR 45.0%
! AGTGGCAAACATTGGTTGGA+GGG - chr8_4:51562201-51562220 Msa1331860:five_prime_UTR 45.0%
ATTGGTTGGAGGGGCTTATT+GGG - chr8_4:51562211-51562230 Msa1331860:five_prime_UTR 45.0%
GTGGAGTGGCAAACATTGGT+TGG - chr8_4:51562197-51562216 Msa1331860:five_prime_UTR 50.0%
! GAGTGGCAAACATTGGTTGG+AGG - chr8_4:51562200-51562219 Msa1331860:five_prime_UTR 50.0%
! GTGGCAAACATTGGTTGGAG+GGG - chr8_4:51562202-51562221 Msa1331860:five_prime_UTR 50.0%
! CATTGGTTGGAGGGGCTTAT+TGG - chr8_4:51562210-51562229 Msa1331860:five_prime_UTR 50.0%
GTGGAGTGGCAAACATTGGT+TGG - chr8_4:51562197-51562216 Msa1331860:five_prime_UTR 50.0%
! GAGTGGCAAACATTGGTTGG+AGG - chr8_4:51562200-51562219 Msa1331860:five_prime_UTR 50.0%
! GTGGCAAACATTGGTTGGAG+GGG - chr8_4:51562202-51562221 Msa1331860:five_prime_UTR 50.0%
! CATTGGTTGGAGGGGCTTAT+TGG - chr8_4:51562210-51562229 Msa1331860:five_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51561100 51562272 51561100 ID=Msa1331860;Name=Msa1331860
chr8_4 mRNA 51561100 51562272 51561100 ID=Msa1331860-mRNA-1;Parent=Msa1331860;Name=Msa1331860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=390|1|1|1|0|0|2|303|114
chr8_4 exon 51561100 51561656 51561100 ID=Msa1331860-mRNA-1:exon:15265;Parent=Msa1331860-mRNA-1
chr8_4 exon 51561792 51562272 51561792 ID=Msa1331860-mRNA-1:exon:15264;Parent=Msa1331860-mRNA-1
chr8_4 five_prime_UTR 51561883 51562272 51561883 ID=Msa1331860-mRNA-1:five_prime_utr;Parent=Msa1331860-mRNA-1
chr8_4 CDS 51561792 51561882 51561792 ID=Msa1331860-mRNA-1:cds;Parent=Msa1331860-mRNA-1
chr8_4 CDS 51561403 51561656 51561403 ID=Msa1331860-mRNA-1:cds;Parent=Msa1331860-mRNA-1
chr8_4 three_prime_UTR 51561100 51561402 51561100 ID=Msa1331860-mRNA-1:three_prime_utr;Parent=Msa1331860-mRNA-1
Gene Sequence

>Msa1331860

ATGGATTCACCAAAAATATACCACAGCAGACTAAAAACTTCAGTTACTCTGATTCTCATAATTTTTCTTACTTTATTTGCTTCTAATTTAGAAGGGTCACAAAATTTGAAGAAATATCATAGAAGTAAGGGTCTTATAAATCAAAAGAAATCAGTATTGGGATCAAGACCTCCAAGGTGTGTTAACAAATGCTTGAATTGCAGACCTTGCATGGCTACTTTAGTTATTTCTCCTCATCACAAAGTTGGTCAAATTCACAAAGCAAAAATAACAGCTGAAAAAGATGAGGGATACTATCTTATGTCATGGAAATGCAAGTGTGGTAACAAGTTCTTTCAACCTTGA
Protein sequence

>Msa1331860

MDSPKIYHSRLKTSVTLILIIFLTLFASNLEGSQNLKKYHRSKGLINQKKSVLGSRPPRCVNKCLNCRPCMATLVISPHHKVGQIHKAKITAEKDEGYYLMSWKCKCGNKFFQP*