AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300800 MtrunA17_Chr4g0063871 98.246 114 2 0 1 114 1 114 2.58e-81 233
Msa1300800 MtrunA17_Chr2g0333071 39.252 107 61 3 11 114 8 113 1.00e-23 87.8
Msa1300800 MtrunA17_Chr3g0123851 39.286 84 38 2 43 114 39 121 5.93e-14 63.2
Msa1300800 MtrunA17_Chr4g0019101 37.755 98 45 4 19 114 79 162 3.01e-13 62.4
Msa1300800 MtrunA17_Chr5g0432501 32.710 107 58 3 11 114 41 136 5.21e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300800 AT1G80133.1 28.696 115 65 3 1 114 1 99 6.00e-12 57.8

Find 46 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTATTTGCTTCTAATTT+AGG 0.129449 8_3:+62444060 Msa1300800:CDS
CATTGGTTGGAGGGGCTTAT+TGG 0.151048 8_3:+62444711 Msa1300800:three_prime_UTR
GTTTGGAATTAACTGCTATT+TGG 0.191429 8_3:-62444631 None:intergenic
AAAGACATAGTTGTTATATT+TGG 0.193293 8_3:-62444607 None:intergenic
AAAGAAATGAGAAGAAGTTT+TGG 0.239549 8_3:-62443943 None:intergenic
TCTTCTAGGTTCTAGCTATT+TGG 0.246087 8_3:+62443817 Msa1300800:five_prime_UTR
AGAACCTAGAAGAATTAATT+TGG 0.251989 8_3:-62443807 None:intergenic
AACGCCAAATTAATTCTTCT+AGG 0.270101 8_3:+62443803 Msa1300800:five_prime_UTR
AATTTCTAGTTAAATTTGTT+TGG 0.291501 8_3:-62444648 None:intergenic
ATTGGTTGGAGGGGCTTATT+GGG 0.330391 8_3:+62444712 Msa1300800:three_prime_UTR
TAGCTATATAACAACTTTCA+AGG 0.370965 8_3:-62444465 None:intergenic
TGGCTATATGCAATAGTAGT+AGG 0.390708 8_3:-62443900 None:intergenic
ATGCCAATGCCACTATATCT+TGG 0.404751 8_3:-62444512 None:intergenic
TTTGTAGTAATAGTATGAAA+TGG 0.410391 8_3:+62444582 Msa1300800:three_prime_UTR
GAAGAAATATCATAGAAGTA+AGG 0.411774 8_3:+62444233 Msa1300800:CDS
AATCAAAAGAAATCAGTATT+GGG 0.417315 8_3:+62444264 Msa1300800:CDS
TTTGGGAGAAAGAGAAAGGA+AGG 0.446803 8_3:-62443925 None:intergenic
TGCCAATGCCACTATATCTT+GGG 0.461271 8_3:-62444511 None:intergenic
AAATCAAAAGAAATCAGTAT+TGG 0.464047 8_3:+62444263 Msa1300800:CDS
ATTTCTCCTCATCACAAAGT+TGG 0.472056 8_3:+62444351 Msa1300800:CDS
ATAATTTCAAAAGTTAGCAT+AGG 0.495740 8_3:+62443661 Msa1300800:five_prime_UTR
TGCCCAAGATATAGTGGCAT+TGG 0.497331 8_3:+62444509 Msa1300800:three_prime_UTR
GTGGAGTGGCAAACATTGGT+TGG 0.510429 8_3:+62444698 Msa1300800:three_prime_UTR
AAGAAATATCATAGAAGTAA+GGG 0.517623 8_3:+62444234 Msa1300800:CDS
AAGCATTTGTTAACACACCT+TGG 0.520904 8_3:-62444297 None:intergenic
CTTGAATTGCAGACCTTGCA+TGG 0.526230 8_3:+62444317 Msa1300800:CDS
TTAGTTCAAATTTGGTGGAG+TGG 0.543403 8_3:+62444684 Msa1300800:three_prime_UTR
TAATTTCAAAAGTTAGCATA+GGG 0.544735 8_3:+62443662 Msa1300800:five_prime_UTR
GAGTGGCAAACATTGGTTGG+AGG 0.548658 8_3:+62444701 Msa1300800:three_prime_UTR
GGCTATATGCAATAGTAGTA+GGG 0.553625 8_3:-62443899 None:intergenic
AGTGGCAAACATTGGTTGGA+GGG 0.556976 8_3:+62444702 Msa1300800:three_prime_UTR
AGGGATACTATCTTATGTCA+TGG 0.560784 8_3:+62444412 Msa1300800:CDS
CATTTGTTAACACACCTTGG+AGG 0.562627 8_3:-62444294 None:intergenic
TGTATGATGACAAAAGAAAG+AGG 0.563682 8_3:+62443623 Msa1300800:five_prime_UTR
ATATTGTGCCCAAGATATAG+TGG 0.570965 8_3:+62444503 Msa1300800:three_prime_UTR
TTCAGCCAGCAAAAGATGAA+AGG 0.571863 8_3:+62443692 Msa1300800:five_prime_UTR
GAGAAAGAGAAAGGAAGGAA+TGG 0.578947 8_3:-62443920 None:intergenic
GTGGCAAACATTGGTTGGAG+GGG 0.580609 8_3:+62444703 Msa1300800:three_prime_UTR
TCATACTATTACTACAAACA+AGG 0.614003 8_3:-62444577 None:intergenic
ATAACTAAAGTAGCCATGCA+AGG 0.616275 8_3:-62444330 None:intergenic
TTTGGTGGAGTGGCAAACAT+TGG 0.627477 8_3:+62444694 Msa1300800:three_prime_UTR
GTATGATGACAAAAGAAAGA+GGG 0.634261 8_3:+62443624 Msa1300800:five_prime_UTR
ATTTGACCAACTTTGTGATG+AGG 0.636465 8_3:-62444357 None:intergenic
TAGGTAAGCTCACAGAGTTG+AGG 0.644476 8_3:-62443749 None:intergenic
TATTGGGATCAAGACCTCCA+AGG 0.671664 8_3:+62444280 Msa1300800:CDS
ATGTCATGGAAATGCAAGTG+TGG 0.695585 8_3:+62444426 Msa1300800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATAGCTATAAATTTTT+GGG + chr8_3:62444477-62444496 Msa1300800:three_prime_UTR 10.0%
!!! TTATATAGCTATAAATTTTT+GGG + chr8_3:62444477-62444496 Msa1300800:three_prime_UTR 10.0%
!!! GTTATATAGCTATAAATTTT+TGG + chr8_3:62444476-62444495 Msa1300800:three_prime_UTR 15.0%
!!! ATCTTTTAAACTATATACAT+AGG - chr8_3:62444539-62444558 None:intergenic 15.0%
!!! AATTTCTAGTTAAATTTGTT+TGG - chr8_3:62444651-62444670 None:intergenic 15.0%
!!! GTTATATAGCTATAAATTTT+TGG + chr8_3:62444476-62444495 Msa1300800:three_prime_UTR 15.0%
!!! ATCTTTTAAACTATATACAT+AGG - chr8_3:62444539-62444558 None:intergenic 15.0%
!!! AATTTCTAGTTAAATTTGTT+TGG - chr8_3:62444651-62444670 None:intergenic 15.0%
!! ATAATTTCAAAAGTTAGCAT+AGG + chr8_3:62443661-62443680 Msa1300800:five_prime_UTR 20.0%
!! TAATTTCAAAAGTTAGCATA+GGG + chr8_3:62443662-62443681 Msa1300800:five_prime_UTR 20.0%
!!! ACTTTATTTGCTTCTAATTT+AGG + chr8_3:62444060-62444079 Msa1300800:CDS 20.0%
!! AAGAAATATCATAGAAGTAA+GGG + chr8_3:62444234-62444253 Msa1300800:CDS 20.0%
!! AAATCAAAAGAAATCAGTAT+TGG + chr8_3:62444263-62444282 Msa1300800:CDS 20.0%
!! AATCAAAAGAAATCAGTATT+GGG + chr8_3:62444264-62444283 Msa1300800:CDS 20.0%
!! TTTGTAGTAATAGTATGAAA+TGG + chr8_3:62444582-62444601 Msa1300800:three_prime_UTR 20.0%
!! AAAGACATAGTTGTTATATT+TGG - chr8_3:62444610-62444629 None:intergenic 20.0%
!! ATAATTTCAAAAGTTAGCAT+AGG + chr8_3:62443661-62443680 Msa1300800:five_prime_UTR 20.0%
!! TAATTTCAAAAGTTAGCATA+GGG + chr8_3:62443662-62443681 Msa1300800:five_prime_UTR 20.0%
!!! ACTTTATTTGCTTCTAATTT+AGG + chr8_3:62444060-62444079 Msa1300800:CDS 20.0%
!! AAGAAATATCATAGAAGTAA+GGG + chr8_3:62444234-62444253 Msa1300800:CDS 20.0%
!! AAATCAAAAGAAATCAGTAT+TGG + chr8_3:62444263-62444282 Msa1300800:CDS 20.0%
!! AATCAAAAGAAATCAGTATT+GGG + chr8_3:62444264-62444283 Msa1300800:CDS 20.0%
!! TTTGTAGTAATAGTATGAAA+TGG + chr8_3:62444582-62444601 Msa1300800:three_prime_UTR 20.0%
!! AAAGACATAGTTGTTATATT+TGG - chr8_3:62444610-62444629 None:intergenic 20.0%
!!! TTTTAAGAGAAATAGAAGCT+AGG - chr8_3:62443771-62443790 None:intergenic 25.0%
! AGAACCTAGAAGAATTAATT+TGG - chr8_3:62443810-62443829 None:intergenic 25.0%
!! AAGAAATGAGAAGAAGTTTT+GGG - chr8_3:62443945-62443964 None:intergenic 25.0%
!! AAAGAAATGAGAAGAAGTTT+TGG - chr8_3:62443946-62443965 None:intergenic 25.0%
!! TTATACCGTTTTATATCTCT+TGG + chr8_3:62444155-62444174 Msa1300800:intron 25.0%
! TTAGACCAAGAGATATAAAA+CGG - chr8_3:62444163-62444182 None:intergenic 25.0%
! GAAGAAATATCATAGAAGTA+AGG + chr8_3:62444233-62444252 Msa1300800:CDS 25.0%
! TAGCTATATAACAACTTTCA+AGG - chr8_3:62444468-62444487 None:intergenic 25.0%
! TCATACTATTACTACAAACA+AGG - chr8_3:62444580-62444599 None:intergenic 25.0%
!!! GTTTGCTTTTAGTTCAAATT+TGG + chr8_3:62444676-62444695 Msa1300800:three_prime_UTR 25.0%
!!! TTTTAAGAGAAATAGAAGCT+AGG - chr8_3:62443771-62443790 None:intergenic 25.0%
! AGAACCTAGAAGAATTAATT+TGG - chr8_3:62443810-62443829 None:intergenic 25.0%
!! AAGAAATGAGAAGAAGTTTT+GGG - chr8_3:62443945-62443964 None:intergenic 25.0%
!! AAAGAAATGAGAAGAAGTTT+TGG - chr8_3:62443946-62443965 None:intergenic 25.0%
!! TTATACCGTTTTATATCTCT+TGG + chr8_3:62444155-62444174 Msa1300800:intron 25.0%
! TTAGACCAAGAGATATAAAA+CGG - chr8_3:62444163-62444182 None:intergenic 25.0%
! GAAGAAATATCATAGAAGTA+AGG + chr8_3:62444233-62444252 Msa1300800:CDS 25.0%
! TAGCTATATAACAACTTTCA+AGG - chr8_3:62444468-62444487 None:intergenic 25.0%
! TCATACTATTACTACAAACA+AGG - chr8_3:62444580-62444599 None:intergenic 25.0%
!!! GTTTGCTTTTAGTTCAAATT+TGG + chr8_3:62444676-62444695 Msa1300800:three_prime_UTR 25.0%
! CTTTCTTTTGTCATCATACA+AGG - chr8_3:62443623-62443642 None:intergenic 30.0%
TGTATGATGACAAAAGAAAG+AGG + chr8_3:62443623-62443642 Msa1300800:five_prime_UTR 30.0%
GTATGATGACAAAAGAAAGA+GGG + chr8_3:62443624-62443643 Msa1300800:five_prime_UTR 30.0%
AACGCCAAATTAATTCTTCT+AGG + chr8_3:62443803-62443822 Msa1300800:five_prime_UTR 30.0%
!! TGCATCTCATCAAGTTTTAA+GGG - chr8_3:62443845-62443864 None:intergenic 30.0%
! ATGCATCTCATCAAGTTTTA+AGG - chr8_3:62443846-62443865 None:intergenic 30.0%
!!! CTTTCTCTTTTTTACACTCA+TGG + chr8_3:62443972-62443991 Msa1300800:exon 30.0%
! AGTCTGCTTTGGTATATTTT+TGG - chr8_3:62444003-62444022 None:intergenic 30.0%
!! ATTGCTTTTCATTGAACAGA+AGG + chr8_3:62444198-62444217 Msa1300800:intron 30.0%
!! TTGCTTTTCATTGAACAGAA+GGG + chr8_3:62444199-62444218 Msa1300800:intron 30.0%
AATAACAGCTGAAAAAGATG+AGG + chr8_3:62444392-62444411 Msa1300800:CDS 30.0%
ATAACAGCTGAAAAAGATGA+GGG + chr8_3:62444393-62444412 Msa1300800:CDS 30.0%
! GTTTGGAATTAACTGCTATT+TGG - chr8_3:62444634-62444653 None:intergenic 30.0%
!!! TGCTTTTAGTTCAAATTTGG+TGG + chr8_3:62444679-62444698 Msa1300800:three_prime_UTR 30.0%
! CTTTCTTTTGTCATCATACA+AGG - chr8_3:62443623-62443642 None:intergenic 30.0%
TGTATGATGACAAAAGAAAG+AGG + chr8_3:62443623-62443642 Msa1300800:five_prime_UTR 30.0%
GTATGATGACAAAAGAAAGA+GGG + chr8_3:62443624-62443643 Msa1300800:five_prime_UTR 30.0%
AACGCCAAATTAATTCTTCT+AGG + chr8_3:62443803-62443822 Msa1300800:five_prime_UTR 30.0%
!! TGCATCTCATCAAGTTTTAA+GGG - chr8_3:62443845-62443864 None:intergenic 30.0%
! ATGCATCTCATCAAGTTTTA+AGG - chr8_3:62443846-62443865 None:intergenic 30.0%
!!! CTTTCTCTTTTTTACACTCA+TGG + chr8_3:62443972-62443991 Msa1300800:exon 30.0%
! AGTCTGCTTTGGTATATTTT+TGG - chr8_3:62444003-62444022 None:intergenic 30.0%
!! ATTGCTTTTCATTGAACAGA+AGG + chr8_3:62444198-62444217 Msa1300800:intron 30.0%
!! TTGCTTTTCATTGAACAGAA+GGG + chr8_3:62444199-62444218 Msa1300800:intron 30.0%
AATAACAGCTGAAAAAGATG+AGG + chr8_3:62444392-62444411 Msa1300800:CDS 30.0%
ATAACAGCTGAAAAAGATGA+GGG + chr8_3:62444393-62444412 Msa1300800:CDS 30.0%
! GTTTGGAATTAACTGCTATT+TGG - chr8_3:62444634-62444653 None:intergenic 30.0%
!!! TGCTTTTAGTTCAAATTTGG+TGG + chr8_3:62444679-62444698 Msa1300800:three_prime_UTR 30.0%
! TTTTGTCATCATACAAGGAG+TGG - chr8_3:62443618-62443637 None:intergenic 35.0%
! AGTTTCCTTTCATCTTTTGC+TGG - chr8_3:62443700-62443719 None:intergenic 35.0%
! TCTTCTAGGTTCTAGCTATT+TGG + chr8_3:62443817-62443836 Msa1300800:five_prime_UTR 35.0%
GGCTATATGCAATAGTAGTA+GGG - chr8_3:62443902-62443921 None:intergenic 35.0%
TGGCTATATGCAATAGTAGT+AGG - chr8_3:62443903-62443922 None:intergenic 35.0%
!!! AAGTTTTGGGAGAAAGAGAA+AGG - chr8_3:62443932-62443951 None:intergenic 35.0%
!!! CTGAAGTTTTTAGTCTGCTT+TGG - chr8_3:62444014-62444033 None:intergenic 35.0%
! AAGCATTTGTTAACACACCT+TGG - chr8_3:62444300-62444319 None:intergenic 35.0%
ATAACTAAAGTAGCCATGCA+AGG - chr8_3:62444333-62444352 None:intergenic 35.0%
ATTTCTCCTCATCACAAAGT+TGG + chr8_3:62444351-62444370 Msa1300800:CDS 35.0%
ATTTGACCAACTTTGTGATG+AGG - chr8_3:62444360-62444379 None:intergenic 35.0%
AGGGATACTATCTTATGTCA+TGG + chr8_3:62444412-62444431 Msa1300800:CDS 35.0%
ATATTGTGCCCAAGATATAG+TGG + chr8_3:62444503-62444522 Msa1300800:three_prime_UTR 35.0%
! TTAGTTCAAATTTGGTGGAG+TGG + chr8_3:62444684-62444703 Msa1300800:three_prime_UTR 35.0%
! TTTTGTCATCATACAAGGAG+TGG - chr8_3:62443618-62443637 None:intergenic 35.0%
! AGTTTCCTTTCATCTTTTGC+TGG - chr8_3:62443700-62443719 None:intergenic 35.0%
! TCTTCTAGGTTCTAGCTATT+TGG + chr8_3:62443817-62443836 Msa1300800:five_prime_UTR 35.0%
GGCTATATGCAATAGTAGTA+GGG - chr8_3:62443902-62443921 None:intergenic 35.0%
TGGCTATATGCAATAGTAGT+AGG - chr8_3:62443903-62443922 None:intergenic 35.0%
!!! AAGTTTTGGGAGAAAGAGAA+AGG - chr8_3:62443932-62443951 None:intergenic 35.0%
!!! CTGAAGTTTTTAGTCTGCTT+TGG - chr8_3:62444014-62444033 None:intergenic 35.0%
! AAGCATTTGTTAACACACCT+TGG - chr8_3:62444300-62444319 None:intergenic 35.0%
ATAACTAAAGTAGCCATGCA+AGG - chr8_3:62444333-62444352 None:intergenic 35.0%
ATTTCTCCTCATCACAAAGT+TGG + chr8_3:62444351-62444370 Msa1300800:CDS 35.0%
ATTTGACCAACTTTGTGATG+AGG - chr8_3:62444360-62444379 None:intergenic 35.0%
AGGGATACTATCTTATGTCA+TGG + chr8_3:62444412-62444431 Msa1300800:CDS 35.0%
ATATTGTGCCCAAGATATAG+TGG + chr8_3:62444503-62444522 Msa1300800:three_prime_UTR 35.0%
! TTAGTTCAAATTTGGTGGAG+TGG + chr8_3:62444684-62444703 Msa1300800:three_prime_UTR 35.0%
TTCAGCCAGCAAAAGATGAA+AGG + chr8_3:62443692-62443711 Msa1300800:five_prime_UTR 40.0%
! TCACAGAGTTGAGGTTTTCA+GGG - chr8_3:62443743-62443762 None:intergenic 40.0%
GAGAAAGAGAAAGGAAGGAA+TGG - chr8_3:62443923-62443942 None:intergenic 40.0%
TTTGGGAGAAAGAGAAAGGA+AGG - chr8_3:62443928-62443947 None:intergenic 40.0%
! CATTTGTTAACACACCTTGG+AGG - chr8_3:62444297-62444316 None:intergenic 40.0%
ATGTCATGGAAATGCAAGTG+TGG + chr8_3:62444426-62444445 Msa1300800:CDS 40.0%
TGCCAATGCCACTATATCTT+GGG - chr8_3:62444514-62444533 None:intergenic 40.0%
ATGCCAATGCCACTATATCT+TGG - chr8_3:62444515-62444534 None:intergenic 40.0%
TTCAGCCAGCAAAAGATGAA+AGG + chr8_3:62443692-62443711 Msa1300800:five_prime_UTR 40.0%
! TCACAGAGTTGAGGTTTTCA+GGG - chr8_3:62443743-62443762 None:intergenic 40.0%
GAGAAAGAGAAAGGAAGGAA+TGG - chr8_3:62443923-62443942 None:intergenic 40.0%
TTTGGGAGAAAGAGAAAGGA+AGG - chr8_3:62443928-62443947 None:intergenic 40.0%
! CATTTGTTAACACACCTTGG+AGG - chr8_3:62444297-62444316 None:intergenic 40.0%
ATGTCATGGAAATGCAAGTG+TGG + chr8_3:62444426-62444445 Msa1300800:CDS 40.0%
TGCCAATGCCACTATATCTT+GGG - chr8_3:62444514-62444533 None:intergenic 40.0%
ATGCCAATGCCACTATATCT+TGG - chr8_3:62444515-62444534 None:intergenic 40.0%
! CTCACAGAGTTGAGGTTTTC+AGG - chr8_3:62443744-62443763 None:intergenic 45.0%
TAGGTAAGCTCACAGAGTTG+AGG - chr8_3:62443752-62443771 None:intergenic 45.0%
TATTGGGATCAAGACCTCCA+AGG + chr8_3:62444280-62444299 Msa1300800:CDS 45.0%
CTTGAATTGCAGACCTTGCA+TGG + chr8_3:62444317-62444336 Msa1300800:CDS 45.0%
TGCCCAAGATATAGTGGCAT+TGG + chr8_3:62444509-62444528 Msa1300800:three_prime_UTR 45.0%
TTTGGTGGAGTGGCAAACAT+TGG + chr8_3:62444694-62444713 Msa1300800:three_prime_UTR 45.0%
! AGTGGCAAACATTGGTTGGA+GGG + chr8_3:62444702-62444721 Msa1300800:three_prime_UTR 45.0%
ATTGGTTGGAGGGGCTTATT+GGG + chr8_3:62444712-62444731 Msa1300800:three_prime_UTR 45.0%
! CTCACAGAGTTGAGGTTTTC+AGG - chr8_3:62443744-62443763 None:intergenic 45.0%
TAGGTAAGCTCACAGAGTTG+AGG - chr8_3:62443752-62443771 None:intergenic 45.0%
TATTGGGATCAAGACCTCCA+AGG + chr8_3:62444280-62444299 Msa1300800:CDS 45.0%
CTTGAATTGCAGACCTTGCA+TGG + chr8_3:62444317-62444336 Msa1300800:CDS 45.0%
TGCCCAAGATATAGTGGCAT+TGG + chr8_3:62444509-62444528 Msa1300800:three_prime_UTR 45.0%
TTTGGTGGAGTGGCAAACAT+TGG + chr8_3:62444694-62444713 Msa1300800:three_prime_UTR 45.0%
! AGTGGCAAACATTGGTTGGA+GGG + chr8_3:62444702-62444721 Msa1300800:three_prime_UTR 45.0%
ATTGGTTGGAGGGGCTTATT+GGG + chr8_3:62444712-62444731 Msa1300800:three_prime_UTR 45.0%
GTGGAGTGGCAAACATTGGT+TGG + chr8_3:62444698-62444717 Msa1300800:three_prime_UTR 50.0%
! GAGTGGCAAACATTGGTTGG+AGG + chr8_3:62444701-62444720 Msa1300800:three_prime_UTR 50.0%
! GTGGCAAACATTGGTTGGAG+GGG + chr8_3:62444703-62444722 Msa1300800:three_prime_UTR 50.0%
! CATTGGTTGGAGGGGCTTAT+TGG + chr8_3:62444711-62444730 Msa1300800:three_prime_UTR 50.0%
GTGGAGTGGCAAACATTGGT+TGG + chr8_3:62444698-62444717 Msa1300800:three_prime_UTR 50.0%
! GAGTGGCAAACATTGGTTGG+AGG + chr8_3:62444701-62444720 Msa1300800:three_prime_UTR 50.0%
! GTGGCAAACATTGGTTGGAG+GGG + chr8_3:62444703-62444722 Msa1300800:three_prime_UTR 50.0%
! CATTGGTTGGAGGGGCTTAT+TGG + chr8_3:62444711-62444730 Msa1300800:three_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 62443601 62444773 62443601 ID=Msa1300800;Name=Msa1300800
chr8_3 mRNA 62443601 62444773 62443601 ID=Msa1300800-mRNA-1;Parent=Msa1300800;Name=Msa1300800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=390|1|1|1|0|0.5|2|303|114
chr8_3 exon 62443601 62444081 62443601 ID=Msa1300800-mRNA-1:exon:18551;Parent=Msa1300800-mRNA-1
chr8_3 exon 62444217 62444773 62444217 ID=Msa1300800-mRNA-1:exon:18552;Parent=Msa1300800-mRNA-1
chr8_3 five_prime_UTR 62443601 62443990 62443601 ID=Msa1300800-mRNA-1:five_prime_utr;Parent=Msa1300800-mRNA-1
chr8_3 CDS 62443991 62444081 62443991 ID=Msa1300800-mRNA-1:cds;Parent=Msa1300800-mRNA-1
chr8_3 CDS 62444217 62444470 62444217 ID=Msa1300800-mRNA-1:cds;Parent=Msa1300800-mRNA-1
chr8_3 three_prime_UTR 62444471 62444773 62444471 ID=Msa1300800-mRNA-1:three_prime_utr;Parent=Msa1300800-mRNA-1
Gene Sequence

>Msa1300800

ATGGATTCACCAAAAATATACCAAAGCAGACTAAAAACTTCAGTTACTCTGATTCTCATAATTTTTCTTACTTTATTTGCTTCTAATTTAGAAGGGTCACAAAATTTGAAGAAATATCATAGAAGTAAGGGTCTTATAAATCAAAAGAAATCAGTATTGGGATCAAGACCTCCAAGGTGTGTTAACAAATGCTTGAATTGCAGACCTTGCATGGCTACTTTAGTTATTTCTCCTCATCACAAAGTTGGTCAAATTCACAAAGCAAAAATAACAGCTGAAAAAGATGAGGGATACTATCTTATGTCATGGAAATGCAAGTGTGGTAACAAGTTCTTTCAACCTTGA
Protein sequence

>Msa1300800

MDSPKIYQSRLKTSVTLILIIFLTLFASNLEGSQNLKKYHRSKGLINQKKSVLGSRPPRCVNKCLNCRPCMATLVISPHHKVGQIHKAKITAEKDEGYYLMSWKCKCGNKFFQP*