Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334110 | AES92584.2 | 95.046 | 323 | 11 | 2 | 1 | 322 | 1 | 319 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334110 | G7JHZ7 | 95.046 | 323 | 11 | 2 | 1 | 322 | 1 | 319 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110970 | Msa1334110 | 0.802823 | 4.673465e-49 | -8.615850e-47 |
| Msa1334110 | Msa1445100 | 0.800044 | 1.733743e-48 | -8.615850e-47 |
| Msa0850960 | Msa1334110 | 0.816711 | 4.803167e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334110 | MtrunA17_Chr4g0074461 | 94.872 | 312 | 11 | 2 | 12 | 322 | 41 | 348 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334110 | AT5G58200.2 | 58.934 | 319 | 112 | 7 | 7 | 320 | 2 | 306 | 2.16e-122 | 353 |
| Msa1334110 | AT5G58200.1 | 58.079 | 229 | 84 | 5 | 94 | 320 | 1 | 219 | 2.23e-83 | 251 |
Find 104 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTACCAATAGCAGCTTTC+TGG | 0.136726 | 8_4:-54425720 | None:intergenic |
| CCAGACTTGGTGCTCTTTAC+AGG | 0.186638 | 8_4:+54423547 | Msa1334110:CDS |
| CAATTCCTTATCTAAGATTT+TGG | 0.210138 | 8_4:+54426795 | Msa1334110:three_prime_UTR |
| TTCACGCGCCTACCTTATTT+TGG | 0.210571 | 8_4:+54422579 | Msa1334110:five_prime_UTR |
| TTTGCTAAAGCAGTTATATT+AGG | 0.232537 | 8_4:+54423932 | Msa1334110:CDS |
| CTTCGTGCAGGCCTTGGTTC+TGG | 0.268641 | 8_4:+54425859 | Msa1334110:intron |
| ACGATATATTCATTTATATA+AGG | 0.297563 | 8_4:-54426723 | None:intergenic |
| CTGATATTACTTGCACATAA+TGG | 0.297738 | 8_4:+54425757 | Msa1334110:CDS |
| CGAGGACATGAGAAGCTTAA+AGG | 0.316354 | 8_4:+54426437 | Msa1334110:CDS |
| AATGTAATTGTATTGGTAAA+TGG | 0.352067 | 8_4:+54426973 | Msa1334110:three_prime_UTR |
| ATGATATATGTGGAAAAGAT+TGG | 0.358927 | 8_4:+54425887 | Msa1334110:CDS |
| TCGTATCTAATGTTAATATA+TGG | 0.363456 | 8_4:+54426742 | Msa1334110:three_prime_UTR |
| ACAACGATTTAACCAAAATA+AGG | 0.370630 | 8_4:-54422591 | None:intergenic |
| TATTAGGAAACCATGATTCC+TGG | 0.379064 | 8_4:+54423948 | Msa1334110:CDS |
| ACAACATCATATACTTGAAT+GGG | 0.396824 | 8_4:+54426382 | Msa1334110:CDS |
| TAATCAGGTATCTATTCCTT+TGG | 0.398444 | 8_4:+54426287 | Msa1334110:CDS |
| TAGGTATCTTCTCTGCTAAA+AGG | 0.401531 | 8_4:-54426834 | None:intergenic |
| TCTATTCCTTTGGTTGTGTT+CGG | 0.404828 | 8_4:+54426297 | Msa1334110:CDS |
| GTATGTTGGGTTCTCTCAAT+CGG | 0.409416 | 8_4:+54426909 | Msa1334110:three_prime_UTR |
| CAAAATCTTAGATAAGGAAT+TGG | 0.411139 | 8_4:-54426794 | None:intergenic |
| TGAATGGGGCCATTGTTCCT+AGG | 0.416349 | 8_4:+54426397 | Msa1334110:CDS |
| TTTGCCTCTAGTGAGGAAAT+AGG | 0.423873 | 8_4:-54426468 | None:intergenic |
| GACAACATCATATACTTGAA+TGG | 0.432447 | 8_4:+54426381 | Msa1334110:CDS |
| CCTGTAAAGAGCACCAAGTC+TGG | 0.435441 | 8_4:-54423547 | None:intergenic |
| TTCTTCTTCTGTTCGAATTG+TGG | 0.440451 | 8_4:+54422673 | Msa1334110:CDS |
| AGAATCCAGAAAGCTGCTAT+TGG | 0.442023 | 8_4:+54425715 | Msa1334110:CDS |
| TTAGGAAAATGATTGTCGTT+GGG | 0.446203 | 8_4:+54426355 | Msa1334110:CDS |
| GGGTTCTCTCAATCGGGAAC+AGG | 0.451468 | 8_4:+54426916 | Msa1334110:three_prime_UTR |
| AGCAGCTTTCTGGATTCTCT+TGG | 0.452550 | 8_4:-54425710 | None:intergenic |
| TGATATATGTGGAAAAGATT+GGG | 0.453237 | 8_4:+54425888 | Msa1334110:CDS |
| TCTGTTCGAATTGTGGTTGT+CGG | 0.454517 | 8_4:+54422680 | Msa1334110:CDS |
| CTGGAGGAATTGAAGTGCCT+TGG | 0.455250 | 8_4:-54422846 | None:intergenic |
| TACCCAACTTTCTGCAACTC+TGG | 0.455845 | 8_4:-54426541 | None:intergenic |
| TCACTCAAGTTGCAAAGCAT+TGG | 0.457545 | 8_4:+54426945 | Msa1334110:three_prime_UTR |
| TACCAGAGTTGCAGAAAGTT+GGG | 0.460117 | 8_4:+54426539 | Msa1334110:CDS |
| TTACCAGAGTTGCAGAAAGT+TGG | 0.462443 | 8_4:+54426538 | Msa1334110:CDS |
| GCTTAGTAAACCAGGAATCA+TGG | 0.463502 | 8_4:-54423958 | None:intergenic |
| GGAATGAAATGTAATTGTAT+TGG | 0.467780 | 8_4:+54426966 | Msa1334110:three_prime_UTR |
| GGAGGGCTCCACTCTTTAGT+TGG | 0.470440 | 8_4:+54422542 | Msa1334110:five_prime_UTR |
| TTTAGGAAAATGATTGTCGT+TGG | 0.470518 | 8_4:+54426354 | Msa1334110:CDS |
| CAAGGCCAAGCAAAATAGAT+AGG | 0.475186 | 8_4:-54426853 | None:intergenic |
| GGTTAAATCGTTGTAGGAGT+TGG | 0.481267 | 8_4:+54422600 | Msa1334110:five_prime_UTR |
| CTTGCTAAAAGAGAATAATC+AGG | 0.482095 | 8_4:+54426272 | Msa1334110:CDS |
| ATGTGGAAAAGATTGGGAAT+TGG | 0.484047 | 8_4:+54425894 | Msa1334110:CDS |
| AATATCAGAAAATGATCCTC+TGG | 0.484452 | 8_4:-54425742 | None:intergenic |
| CTTTACTTTAGTTGAGCTCT+CGG | 0.486107 | 8_4:+54426506 | Msa1334110:CDS |
| TATTGCACTGCAGCCAGACT+TGG | 0.494605 | 8_4:+54423534 | Msa1334110:intron |
| CTAATAAAAGTAAGTGTCGT+TGG | 0.499051 | 8_4:+54424889 | Msa1334110:CDS |
| GAGTTCAGCTACAGCTAGAA+TGG | 0.501511 | 8_4:+54424380 | Msa1334110:CDS |
| TTGGATGGTGATGGTGATCA+TGG | 0.502841 | 8_4:+54425913 | Msa1334110:CDS |
| CAAAGAGCTCGCACATGGCA+AGG | 0.507452 | 8_4:+54426329 | Msa1334110:CDS |
| ATACGACAGGTGTGTATGTT+GGG | 0.508935 | 8_4:+54426896 | Msa1334110:three_prime_UTR |
| TATGTACGCATGCTTATCAT+AGG | 0.516730 | 8_4:+54427031 | Msa1334110:three_prime_UTR |
| AACTACCAAAATCTTAGATA+AGG | 0.520923 | 8_4:-54426800 | None:intergenic |
| TATGTTGGGTTCTCTCAATC+GGG | 0.521037 | 8_4:+54426910 | Msa1334110:three_prime_UTR |
| TGATTTAATTGTCAGTGAGA+AGG | 0.524103 | 8_4:+54424354 | Msa1334110:intron |
| GTATACACATTGAATACGAC+AGG | 0.526982 | 8_4:+54426883 | Msa1334110:three_prime_UTR |
| CGAGAGCTCAACTAAAGTAA+AGG | 0.527148 | 8_4:-54426505 | None:intergenic |
| GCATAGATGAAAACAGTTCG+AGG | 0.534317 | 8_4:+54426679 | Msa1334110:three_prime_UTR |
| GAATGGGGCCATTGTTCCTA+GGG | 0.535631 | 8_4:+54426398 | Msa1334110:CDS |
| ATTTCCTCACTAGAGGCAAA+TGG | 0.535934 | 8_4:+54426471 | Msa1334110:CDS |
| GCTTTGTTGCTCGACTTCAA+TGG | 0.536809 | 8_4:+54422631 | Msa1334110:exon |
| CAAGGCACTTCAATTCCTCC+AGG | 0.539590 | 8_4:+54422847 | Msa1334110:CDS |
| TACGCATGCTTATCATAGGC+AGG | 0.544992 | 8_4:+54427035 | Msa1334110:three_prime_UTR |
| GAACTTTCAACAAGATTCCA+AGG | 0.547092 | 8_4:+54422829 | Msa1334110:CDS |
| CAGCCTTGGCAAGGAGCACG+TGG | 0.559658 | 8_4:+54424843 | Msa1334110:intron |
| AATACGACAGGTGTGTATGT+TGG | 0.563167 | 8_4:+54426895 | Msa1334110:three_prime_UTR |
| AAAGAACATATATTATTCGA+AGG | 0.564389 | 8_4:+54426591 | Msa1334110:CDS |
| TAGGAAAATGATTGTCGTTG+GGG | 0.566303 | 8_4:+54426356 | Msa1334110:CDS |
| ATTTGAATATGGATTATGGA+GGG | 0.576617 | 8_4:+54422525 | None:intergenic |
| AAGCCACGTGCTCCTTGCCA+AGG | 0.581175 | 8_4:-54424846 | None:intergenic |
| ACTTTAGTTGAGCTCTCGGA+AGG | 0.587799 | 8_4:+54426510 | Msa1334110:CDS |
| ATAAAAGTAAGTGTCGTTGG+TGG | 0.589858 | 8_4:+54424892 | Msa1334110:CDS |
| AGAGATGAATGATTAAGCAT+CGG | 0.592610 | 8_4:+54427122 | Msa1334110:three_prime_UTR |
| AAGTCCTATTTCCTCACTAG+AGG | 0.594070 | 8_4:+54426464 | Msa1334110:CDS |
| TGTGAATCTCAGCCTTGGCA+AGG | 0.603352 | 8_4:+54424834 | Msa1334110:intron |
| GTGCGAGCTCTTTGTGCATG+TGG | 0.604383 | 8_4:-54426320 | None:intergenic |
| AAACGACAACTTAGAAGATG+AGG | 0.606215 | 8_4:-54426631 | None:intergenic |
| GGGTATCAGTTATTGACGAT+AGG | 0.606861 | 8_4:+54426559 | Msa1334110:CDS |
| TGTACCATTTGCCTCTAGTG+AGG | 0.611667 | 8_4:-54426475 | None:intergenic |
| AATGTGTATACAAATGTGCA+AGG | 0.612792 | 8_4:-54426871 | None:intergenic |
| TAAAAGTAAGTGTCGTTGGT+GGG | 0.618453 | 8_4:+54424893 | Msa1334110:CDS |
| AATTGTGGTTGTCGGTGATG+TGG | 0.620767 | 8_4:+54422688 | Msa1334110:CDS |
| AGAAAACCGCTTAGTAAACC+AGG | 0.621108 | 8_4:-54423966 | None:intergenic |
| TATTTGAATATGGATTATGG+AGG | 0.622157 | 8_4:+54422524 | None:intergenic |
| AAAGAGCTCGCACATGGCAA+GGG | 0.623466 | 8_4:+54426330 | Msa1334110:CDS |
| CGATTTAACCAAAATAAGGT+AGG | 0.626542 | 8_4:-54422587 | None:intergenic |
| CTTGCACATAATGGACCCAC+AGG | 0.631104 | 8_4:+54425766 | Msa1334110:CDS |
| GATTGGGAATTGGATGGTGA+TGG | 0.631826 | 8_4:+54425904 | Msa1334110:CDS |
| TCTGGTTCGAATGATATATG+TGG | 0.634276 | 8_4:+54425877 | Msa1334110:CDS |
| ATGATTCCTGGTTTACTAAG+CGG | 0.635427 | 8_4:+54423960 | Msa1334110:CDS |
| ACGTGCTGCCAACTAAAGAG+TGG | 0.639571 | 8_4:-54422550 | None:intergenic |
| GGTAATAGACATCATAACAT+CGG | 0.641858 | 8_4:+54426763 | Msa1334110:three_prime_UTR |
| GATGGTGATCATGGTGACCC+AGG | 0.642301 | 8_4:+54425922 | Msa1334110:CDS |
| ATGTGGCCGAACACAACCAA+AGG | 0.646151 | 8_4:-54426303 | None:intergenic |
| ATGCACAAAGAGCTCGCACA+TGG | 0.647134 | 8_4:+54426324 | Msa1334110:CDS |
| AAGTAAGTGTCGTTGGTGGG+CGG | 0.653157 | 8_4:+54424896 | Msa1334110:CDS |
| TACATAAGAGCACAACGCAT+AGG | 0.657745 | 8_4:-54427014 | None:intergenic |
| GGTCAAAAGTTTGAGCGACG+AGG | 0.662003 | 8_4:+54426419 | Msa1334110:CDS |
| AGCTGCTATTGGTACACCAG+AGG | 0.664764 | 8_4:+54425726 | Msa1334110:CDS |
| TAGATATGGAGTTAAAGACA+TGG | 0.667486 | 8_4:+54425678 | Msa1334110:intron |
| CAACATCATATACTTGAATG+GGG | 0.669817 | 8_4:+54426383 | Msa1334110:CDS |
| GGAAAAGATTGGGAATTGGA+TGG | 0.680179 | 8_4:+54425898 | Msa1334110:CDS |
| TATCATTCGAACCAGAACCA+AGG | 0.710976 | 8_4:-54425870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCATATAAATAAAAATAA+AGG | - | chr8_4:54423469-54423488 | None:intergenic | 10.0% |
| !! | ATAAAAATTGATTACTTTAT+CGG | - | chr8_4:54425379-54425398 | None:intergenic | 10.0% |
| !!! | ATACTTTTTTTAATCTTAAA+TGG | + | chr8_4:54425412-54425431 | Msa1334110:intron | 10.0% |
| !! | ACAAATATTTAACATTAATT+TGG | - | chr8_4:54426054-54426073 | None:intergenic | 10.0% |
| !!! | TTTCATTTTAAAACAAATGA+TGG | + | chr8_4:54424085-54424104 | Msa1334110:intron | 15.0% |
| !!! | TTCATTTTAAAACAAATGAT+GGG | + | chr8_4:54424086-54424105 | Msa1334110:intron | 15.0% |
| !!! | AAACTTAAATCCAATTTTTT+TGG | - | chr8_4:54424234-54424253 | None:intergenic | 15.0% |
| !! | ATACTTTCATTAAAAGAAAA+TGG | + | chr8_4:54424572-54424591 | Msa1334110:intron | 15.0% |
| !! | TACTTTCATTAAAAGAAAAT+GGG | + | chr8_4:54424573-54424592 | Msa1334110:intron | 15.0% |
| !! | TAAAAATTGATTACTTTATC+GGG | - | chr8_4:54425378-54425397 | None:intergenic | 15.0% |
| !!! | TTTTTTTAATCTTAAATGGA+TGG | + | chr8_4:54425416-54425435 | Msa1334110:intron | 15.0% |
| !! | ATATCAATTATGATTTACAA+TGG | - | chr8_4:54425638-54425657 | None:intergenic | 15.0% |
| !! | GTATATATTAATTATTACCT+GGG | - | chr8_4:54425942-54425961 | None:intergenic | 15.0% |
| !! | TGTATATATTAATTATTACC+TGG | - | chr8_4:54425943-54425962 | None:intergenic | 15.0% |
| !!! | AAAATAAAATCTTGTGTTTT+TGG | + | chr8_4:54425984-54426003 | Msa1334110:intron | 15.0% |
| !!! | TAATATATGTTCTTTTAATG+TGG | - | chr8_4:54426586-54426605 | None:intergenic | 15.0% |
| !! | ACGATATATTCATTTATATA+AGG | - | chr8_4:54426726-54426745 | None:intergenic | 15.0% |
| !! | TAATGAGAATAATTATTACC+TGG | - | chr8_4:54422868-54422887 | None:intergenic | 20.0% |
| !! | CTAATTGAGAATGTAAATTA+CGG | + | chr8_4:54422959-54422978 | Msa1334110:intron | 20.0% |
| !!! | TCTCTTGAGTTAATATATTT+TGG | + | chr8_4:54423105-54423124 | Msa1334110:intron | 20.0% |
| !!! | TATTCTGTGTAATTTTCTAA+TGG | + | chr8_4:54423146-54423165 | Msa1334110:intron | 20.0% |
| !! | TTAAATTCATTTAGTGTTGT+TGG | + | chr8_4:54423620-54423639 | Msa1334110:intron | 20.0% |
| !! | AATTCAACACAAAATTTCAA+AGG | - | chr8_4:54423691-54423710 | None:intergenic | 20.0% |
| !! | TGAAATACGTAATTAACATA+TGG | - | chr8_4:54424260-54424279 | None:intergenic | 20.0% |
| !! | AAGGTACAAAATTAATTCTT+TGG | - | chr8_4:54424412-54424431 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTATAGAATCAGT+TGG | + | chr8_4:54424781-54424800 | Msa1334110:intron | 20.0% |
| !!! | TAATATCCATTGTTTTCATA+AGG | + | chr8_4:54425519-54425538 | Msa1334110:intron | 20.0% |
| !!! | TTTGAACTTTTTCTTAGATA+TGG | + | chr8_4:54425664-54425683 | Msa1334110:intron | 20.0% |
| !!! | AGAAAATTCAGGAATTATTT+TGG | - | chr8_4:54425841-54425860 | None:intergenic | 20.0% |
| !!! | ATTTAACATTAATTTGGAGT+GGG | - | chr8_4:54426048-54426067 | None:intergenic | 20.0% |
| !!! | TATTTAACATTAATTTGGAG+TGG | - | chr8_4:54426049-54426068 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTTCATTTCAAA+TGG | + | chr8_4:54426069-54426088 | Msa1334110:intron | 20.0% |
| !! | TGATTTAACCTAGTTTATTA+TGG | + | chr8_4:54426219-54426238 | Msa1334110:intron | 20.0% |
| !! | AAAGAACATATATTATTCGA+AGG | + | chr8_4:54426591-54426610 | Msa1334110:CDS | 20.0% |
| !! | TCGTATCTAATGTTAATATA+TGG | + | chr8_4:54426742-54426761 | Msa1334110:three_prime_UTR | 20.0% |
| !!! | AATGTAATTGTATTGGTAAA+TGG | + | chr8_4:54426973-54426992 | Msa1334110:three_prime_UTR | 20.0% |
| ! | ACAACGATTTAACCAAAATA+AGG | - | chr8_4:54422594-54422613 | None:intergenic | 25.0% |
| !!! | TATTTTGGTTAAATCGTTGT+AGG | + | chr8_4:54422594-54422613 | Msa1334110:five_prime_UTR | 25.0% |
| ! | AATTAAGCGACAAAATTTGT+AGG | - | chr8_4:54423280-54423299 | None:intergenic | 25.0% |
| !! | AACACAATCGTTTTCTTTAT+AGG | - | chr8_4:54423387-54423406 | None:intergenic | 25.0% |
| !!! | TCAGATATATGCTTGTTATT+AGG | - | chr8_4:54423491-54423510 | None:intergenic | 25.0% |
| ! | AAATATCAACATAGTGTGAT+AGG | - | chr8_4:54423599-54423618 | None:intergenic | 25.0% |
| !! | AAATTTTGTGTTGAATTCCA+TGG | + | chr8_4:54423694-54423713 | Msa1334110:intron | 25.0% |
| !! | ACACTGAATTGAATTTTGTT+AGG | + | chr8_4:54423857-54423876 | Msa1334110:intron | 25.0% |
| !! | TGAATTTTGTTAGGTGATTT+TGG | + | chr8_4:54423866-54423885 | Msa1334110:intron | 25.0% |
| ! | TTTGCTAAAGCAGTTATATT+AGG | + | chr8_4:54423932-54423951 | Msa1334110:CDS | 25.0% |
| ! | CACAAAAGAAAAATGATTTG+AGG | - | chr8_4:54424016-54424035 | None:intergenic | 25.0% |
| !! | TGAAATTATCTAAAGTCTTG+TGG | - | chr8_4:54424070-54424089 | None:intergenic | 25.0% |
| ! | AACAATAAAATTTCCATGCT+AGG | - | chr8_4:54424458-54424477 | None:intergenic | 25.0% |
| ! | TGATATGCGTATATAATATG+TGG | + | chr8_4:54424533-54424552 | Msa1334110:intron | 25.0% |
| ! | GATATGCGTATATAATATGT+GGG | + | chr8_4:54424534-54424553 | Msa1334110:intron | 25.0% |
| ! | AGATTACTTAAAAGCCTAAT+TGG | + | chr8_4:54424720-54424739 | Msa1334110:intron | 25.0% |
| !! | ACTTTTCAGTAAATCTAGAA+AGG | - | chr8_4:54424748-54424767 | None:intergenic | 25.0% |
| !!! | TTAAAACATTGAGTTGACAT+TGG | - | chr8_4:54425026-54425045 | None:intergenic | 25.0% |
| ! | ATTGTAAACCAACAACAAAT+AGG | + | chr8_4:54425333-54425352 | Msa1334110:intron | 25.0% |
| ! | ATAAATAGATGGCAATATGT+GGG | - | chr8_4:54425443-54425462 | None:intergenic | 25.0% |
| ! | ACATCAGAAACATAAATAGA+TGG | - | chr8_4:54425454-54425473 | None:intergenic | 25.0% |
| ! | ATGATATATGTGGAAAAGAT+TGG | + | chr8_4:54425887-54425906 | Msa1334110:CDS | 25.0% |
| ! | TGATATATGTGGAAAAGATT+GGG | + | chr8_4:54425888-54425907 | Msa1334110:CDS | 25.0% |
| ! | TTAATATATACATGAGAGCT+TGG | + | chr8_4:54425951-54425970 | Msa1334110:intron | 25.0% |
| !!! | AATCTTGTGTTTTTGGTTAT+TGG | + | chr8_4:54425991-54426010 | Msa1334110:intron | 25.0% |
| !! | TTTAACATTAATTTGGAGTG+GGG | - | chr8_4:54426047-54426066 | None:intergenic | 25.0% |
| ! | TTATGCAACCATAATAAACT+AGG | - | chr8_4:54426230-54426249 | None:intergenic | 25.0% |
| ! | ACAACATCATATACTTGAAT+GGG | + | chr8_4:54426382-54426401 | Msa1334110:CDS | 25.0% |
| ! | CAAAATCTTAGATAAGGAAT+TGG | - | chr8_4:54426797-54426816 | None:intergenic | 25.0% |
| !!! | CAATTCCTTATCTAAGATTT+TGG | + | chr8_4:54426795-54426814 | Msa1334110:three_prime_UTR | 25.0% |
| ! | AACTACCAAAATCTTAGATA+AGG | - | chr8_4:54426803-54426822 | None:intergenic | 25.0% |
| ! | GGAATGAAATGTAATTGTAT+TGG | + | chr8_4:54426966-54426985 | Msa1334110:three_prime_UTR | 25.0% |
| !!! | TAGTTTTAATGAGTTAGCAT+TGG | + | chr8_4:54427062-54427081 | Msa1334110:three_prime_UTR | 25.0% |
| CGATTTAACCAAAATAAGGT+AGG | - | chr8_4:54422590-54422609 | None:intergenic | 30.0% | |
| CATGCTTAAAAAGATTAGGA+AGG | - | chr8_4:54422802-54422821 | None:intergenic | 30.0% | |
| CAGTCATGCTTAAAAAGATT+AGG | - | chr8_4:54422806-54422825 | None:intergenic | 30.0% | |
| TGAGAATAATTATTACCTGG+AGG | - | chr8_4:54422865-54422884 | None:intergenic | 30.0% | |
| TTACGGAAGCAATCAAATTA+AGG | + | chr8_4:54422976-54422995 | Msa1334110:intron | 30.0% | |
| TACGGAAGCAATCAAATTAA+GGG | + | chr8_4:54422977-54422996 | Msa1334110:intron | 30.0% | |
| AAAAAGATAAGAAGCTGTCT+CGG | + | chr8_4:54423196-54423215 | Msa1334110:intron | 30.0% | |
| AAAATTTGTAGGTTTCCTGA+TGG | - | chr8_4:54423269-54423288 | None:intergenic | 30.0% | |
| !! | AAAATTAAGCGACTGACTTT+TGG | - | chr8_4:54423329-54423348 | None:intergenic | 30.0% |
| CAATTCAGTGTAGTTGAAAA+AGG | - | chr8_4:54423848-54423867 | None:intergenic | 30.0% | |
| TTGTGTGTGTTAAATTTACG+TGG | + | chr8_4:54424031-54424050 | Msa1334110:intron | 30.0% | |
| ! | ATGATGGGATACAATAACAA+TGG | + | chr8_4:54424101-54424120 | Msa1334110:intron | 30.0% |
| !!! | TCCAATTTTTTTGGATCCAT+GGG | - | chr8_4:54424225-54424244 | None:intergenic | 30.0% |
| !!! | ATCCAATTTTTTTGGATCCA+TGG | - | chr8_4:54424226-54424245 | None:intergenic | 30.0% |
| TGATTTAATTGTCAGTGAGA+AGG | + | chr8_4:54424354-54424373 | Msa1334110:intron | 30.0% | |
| AATTCTTTCAAACCCTCAAT+GGG | - | chr8_4:54424619-54424638 | None:intergenic | 30.0% | |
| !! | ACGACACTTACTTTTATTAG+AGG | - | chr8_4:54424889-54424908 | None:intergenic | 30.0% |
| ! | CTAATAAAAGTAAGTGTCGT+TGG | + | chr8_4:54424889-54424908 | Msa1334110:CDS | 30.0% |
| !!! | AGCAGCTTTTTTCGAAATAA+TGG | - | chr8_4:54424943-54424962 | None:intergenic | 30.0% |
| AAGGTGTGTATTACTTGTAA+AGG | + | chr8_4:54424969-54424988 | Msa1334110:intron | 30.0% | |
| CTTGTTGGGATTAAAAACAA+AGG | - | chr8_4:54425057-54425076 | None:intergenic | 30.0% | |
| ! | TCTTATTTGCTCCAATTATG+TGG | + | chr8_4:54425089-54425108 | Msa1334110:intron | 30.0% |
| !!! | TTTTCAAGTGACCACATAAT+TGG | - | chr8_4:54425103-54425122 | None:intergenic | 30.0% |
| !!! | CAAACTATTTTGAAGCAAAC+TGG | - | chr8_4:54425153-54425172 | None:intergenic | 30.0% |
| GTTTGCTTCAAAATAGTTTG+AGG | + | chr8_4:54425153-54425172 | Msa1334110:intron | 30.0% | |
| !! | GAGGAAAATAACCACTTTTA+AGG | + | chr8_4:54425172-54425191 | Msa1334110:intron | 30.0% |
| AATTCACAAGTCCTTAAAAG+TGG | - | chr8_4:54425186-54425205 | None:intergenic | 30.0% | |
| !! | AAGTACAACCTATTTGTTGT+TGG | - | chr8_4:54425344-54425363 | None:intergenic | 30.0% |
| CATAAATAGATGGCAATATG+TGG | - | chr8_4:54425444-54425463 | None:intergenic | 30.0% | |
| TATTACAGTCAAGTAACTCT+AGG | - | chr8_4:54425504-54425523 | None:intergenic | 30.0% | |
| CTTATGCCTTATGAAAACAA+TGG | - | chr8_4:54425528-54425547 | None:intergenic | 30.0% | |
| ATACCATACATTATCTTCCT+GGG | - | chr8_4:54425596-54425615 | None:intergenic | 30.0% | |
| AATACCATACATTATCTTCC+TGG | - | chr8_4:54425597-54425616 | None:intergenic | 30.0% | |
| TAGATATGGAGTTAAAGACA+TGG | + | chr8_4:54425678-54425697 | Msa1334110:intron | 30.0% | |
| AATATCAGAAAATGATCCTC+TGG | - | chr8_4:54425745-54425764 | None:intergenic | 30.0% | |
| CTGATATTACTTGCACATAA+TGG | + | chr8_4:54425757-54425776 | Msa1334110:CDS | 30.0% | |
| ! | TTAACATTAATTTGGAGTGG+GGG | - | chr8_4:54426046-54426065 | None:intergenic | 30.0% |
| ! | CTGATTATTCTCTTTTAGCA+AGG | - | chr8_4:54426274-54426293 | None:intergenic | 30.0% |
| CTTGCTAAAAGAGAATAATC+AGG | + | chr8_4:54426272-54426291 | Msa1334110:CDS | 30.0% | |
| TAATCAGGTATCTATTCCTT+TGG | + | chr8_4:54426287-54426306 | Msa1334110:CDS | 30.0% | |
| TTTAGGAAAATGATTGTCGT+TGG | + | chr8_4:54426354-54426373 | Msa1334110:CDS | 30.0% | |
| TTAGGAAAATGATTGTCGTT+GGG | + | chr8_4:54426355-54426374 | Msa1334110:CDS | 30.0% | |
| GACAACATCATATACTTGAA+TGG | + | chr8_4:54426381-54426400 | Msa1334110:CDS | 30.0% | |
| CAACATCATATACTTGAATG+GGG | + | chr8_4:54426383-54426402 | Msa1334110:CDS | 30.0% | |
| GGTAATAGACATCATAACAT+CGG | + | chr8_4:54426763-54426782 | Msa1334110:three_prime_UTR | 30.0% | |
| ! | AGATACCTATCTATTTTGCT+TGG | + | chr8_4:54426848-54426867 | Msa1334110:three_prime_UTR | 30.0% |
| AATGTGTATACAAATGTGCA+AGG | - | chr8_4:54426874-54426893 | None:intergenic | 30.0% | |
| AGAGATGAATGATTAAGCAT+CGG | + | chr8_4:54427122-54427141 | Msa1334110:three_prime_UTR | 30.0% | |
| TTCTTCTTCTGTTCGAATTG+TGG | + | chr8_4:54422673-54422692 | Msa1334110:CDS | 35.0% | |
| !! | ATCTTTTTAAGCATGACTGC+TGG | + | chr8_4:54422807-54422826 | Msa1334110:intron | 35.0% |
| GAACTTTCAACAAGATTCCA+AGG | + | chr8_4:54422829-54422848 | Msa1334110:CDS | 35.0% | |
| AAAAGATAAGAAGCTGTCTC+GGG | + | chr8_4:54423197-54423216 | Msa1334110:intron | 35.0% | |
| TTCATACTAGATATGCCATC+AGG | + | chr8_4:54423251-54423270 | Msa1334110:intron | 35.0% | |
| AGTGCGCAAATTGAATTAAG+TGG | + | chr8_4:54423422-54423441 | Msa1334110:intron | 35.0% | |
| !! | TTAGTGTTGTTGGTTCTTTG+TGG | + | chr8_4:54423630-54423649 | Msa1334110:intron | 35.0% |
| ATTTCCACACCAACTAGAAT+AGG | - | chr8_4:54423656-54423675 | None:intergenic | 35.0% | |
| TGTGCAAAATAACAATGCCA+TGG | - | chr8_4:54423714-54423733 | None:intergenic | 35.0% | |
| TATTAGGAAACCATGATTCC+TGG | + | chr8_4:54423948-54423967 | Msa1334110:CDS | 35.0% | |
| ATGATTCCTGGTTTACTAAG+CGG | + | chr8_4:54423960-54423979 | Msa1334110:CDS | 35.0% | |
| TGTGTGTTAAATTTACGTGG+TGG | + | chr8_4:54424034-54424053 | Msa1334110:intron | 35.0% | |
| TCCCATGGATCCAAAAAAAT+TGG | + | chr8_4:54424221-54424240 | Msa1334110:intron | 35.0% | |
| GCCTGCAACTAATACTTATA+GGG | - | chr8_4:54424301-54424320 | None:intergenic | 35.0% | |
| CTATAAGTATTAGTTGCAGG+CGG | + | chr8_4:54424300-54424319 | Msa1334110:intron | 35.0% | |
| TAAAATTTCCATGCTAGGTG+AGG | - | chr8_4:54424453-54424472 | None:intergenic | 35.0% | |
| TTCTAAATCCTTTCCCATTG+AGG | + | chr8_4:54424603-54424622 | Msa1334110:intron | 35.0% | |
| TCTAAATCCTTTCCCATTGA+GGG | + | chr8_4:54424604-54424623 | Msa1334110:intron | 35.0% | |
| CAATTCTTTCAAACCCTCAA+TGG | - | chr8_4:54424620-54424639 | None:intergenic | 35.0% | |
| !!! | TCTATGCTGCTTTTTAACTG+TGG | + | chr8_4:54424647-54424666 | Msa1334110:intron | 35.0% |
| !! | AATCTAGAAAGGTGCCAATT+AGG | - | chr8_4:54424737-54424756 | None:intergenic | 35.0% |
| ! | ATAAAAGTAAGTGTCGTTGG+TGG | + | chr8_4:54424892-54424911 | Msa1334110:CDS | 35.0% |
| ! | TAAAAGTAAGTGTCGTTGGT+GGG | + | chr8_4:54424893-54424912 | Msa1334110:CDS | 35.0% |
| GAAAACTCAACTCTCTTGTT+GGG | - | chr8_4:54425071-54425090 | None:intergenic | 35.0% | |
| AGAAAACTCAACTCTCTTGT+TGG | - | chr8_4:54425072-54425091 | None:intergenic | 35.0% | |
| AGGCATAAGCAACATTGAAA+CGG | + | chr8_4:54425539-54425558 | Msa1334110:intron | 35.0% | |
| TGAAACGGTAAAAGTGAAGT+TGG | + | chr8_4:54425554-54425573 | Msa1334110:intron | 35.0% | |
| ATCTTCCTGGGAAGTAAAAA+AGG | - | chr8_4:54425584-54425603 | None:intergenic | 35.0% | |
| ! | TCTGGTTCGAATGATATATG+TGG | + | chr8_4:54425877-54425896 | Msa1334110:CDS | 35.0% |
| ATGTGGAAAAGATTGGGAAT+TGG | + | chr8_4:54425894-54425913 | Msa1334110:CDS | 35.0% | |
| ! | AAGTATAGTAGTGATTTGCC+TGG | + | chr8_4:54426117-54426136 | Msa1334110:intron | 35.0% |
| ATGTCCACCAAAACAGAAAA+TGG | - | chr8_4:54426143-54426162 | None:intergenic | 35.0% | |
| TGTACCATAAGATGCAAATG+TGG | + | chr8_4:54426162-54426181 | Msa1334110:intron | 35.0% | |
| TCAACCACATTTGCATCTTA+TGG | - | chr8_4:54426169-54426188 | None:intergenic | 35.0% | |
| TGATGTCAACGTTGCAAAAA+TGG | + | chr8_4:54426191-54426210 | Msa1334110:intron | 35.0% | |
| GATGTCAACGTTGCAAAAAT+GGG | + | chr8_4:54426192-54426211 | Msa1334110:intron | 35.0% | |
| TCTATTCCTTTGGTTGTGTT+CGG | + | chr8_4:54426297-54426316 | Msa1334110:CDS | 35.0% | |
| TAGGAAAATGATTGTCGTTG+GGG | + | chr8_4:54426356-54426375 | Msa1334110:CDS | 35.0% | |
| CTTTACTTTAGTTGAGCTCT+CGG | + | chr8_4:54426506-54426525 | Msa1334110:CDS | 35.0% | |
| AAACGACAACTTAGAAGATG+AGG | - | chr8_4:54426634-54426653 | None:intergenic | 35.0% | |
| TAGGTATCTTCTCTGCTAAA+AGG | - | chr8_4:54426837-54426856 | None:intergenic | 35.0% | |
| GTATACACATTGAATACGAC+AGG | + | chr8_4:54426883-54426902 | Msa1334110:three_prime_UTR | 35.0% | |
| TATGTACGCATGCTTATCAT+AGG | + | chr8_4:54427031-54427050 | Msa1334110:three_prime_UTR | 35.0% | |
| GGTTAAATCGTTGTAGGAGT+TGG | + | chr8_4:54422600-54422619 | Msa1334110:five_prime_UTR | 40.0% | |
| AGAAGAAGAAGAAGAAGACG+CGG | - | chr8_4:54422660-54422679 | None:intergenic | 40.0% | |
| TCTGTTCGAATTGTGGTTGT+CGG | + | chr8_4:54422680-54422699 | Msa1334110:CDS | 40.0% | |
| !! | CAAGAGCATAGCATAGCTTT+TGG | - | chr8_4:54422931-54422950 | None:intergenic | 40.0% |
| CAAAAGCTATGCTATGCTCT+TGG | + | chr8_4:54422929-54422948 | Msa1334110:intron | 40.0% | |
| GAACGTGACATCAAAAGGAA+GGG | - | chr8_4:54423032-54423051 | None:intergenic | 40.0% | |
| TGAACGTGACATCAAAAGGA+AGG | - | chr8_4:54423033-54423052 | None:intergenic | 40.0% | |
| CTTGTGAACGTGACATCAAA+AGG | - | chr8_4:54423037-54423056 | None:intergenic | 40.0% | |
| TCTTTGTGGCCTATTCTAGT+TGG | + | chr8_4:54423644-54423663 | Msa1334110:intron | 40.0% | |
| ! | TCTAGTTGGTGTGGAAATAG+CGG | + | chr8_4:54423658-54423677 | Msa1334110:intron | 40.0% |
| !! | TTTGTTAGGTGATTTTGGCG+AGG | + | chr8_4:54423871-54423890 | Msa1334110:intron | 40.0% |
| GCTTAGTAAACCAGGAATCA+TGG | - | chr8_4:54423961-54423980 | None:intergenic | 40.0% | |
| AGAAAACCGCTTAGTAAACC+AGG | - | chr8_4:54423969-54423988 | None:intergenic | 40.0% | |
| ! | TTACTAAGCGGTTTTCTGAC+AGG | + | chr8_4:54423972-54423991 | Msa1334110:CDS | 40.0% |
| ! | ACGCTTTTCATTTAGGGAGA+GGG | - | chr8_4:54424171-54424190 | None:intergenic | 40.0% |
| GCCCTATAAGTATTAGTTGC+AGG | + | chr8_4:54424297-54424316 | Msa1334110:intron | 40.0% | |
| CGCCTGCAACTAATACTTAT+AGG | - | chr8_4:54424302-54424321 | None:intergenic | 40.0% | |
| GCATCAGGATTGTAATCGTA+AGG | - | chr8_4:54424431-54424450 | None:intergenic | 40.0% | |
| ! | CATCAAGAGTGTACTCATCA+TGG | - | chr8_4:54424484-54424503 | None:intergenic | 40.0% |
| TTTCAAACCCTCAATGGGAA+AGG | - | chr8_4:54424614-54424633 | None:intergenic | 40.0% | |
| ATTACTGTGAATCTCAGCCT+TGG | + | chr8_4:54424829-54424848 | Msa1334110:intron | 40.0% | |
| ! | GGCTGATAGTGCTAGATATT+GGG | - | chr8_4:54425480-54425499 | None:intergenic | 40.0% |
| ! | TGGCTGATAGTGCTAGATAT+TGG | - | chr8_4:54425481-54425500 | None:intergenic | 40.0% |
| TACAGTCAAGTAACTCTAGG+TGG | - | chr8_4:54425501-54425520 | None:intergenic | 40.0% | |
| ACGGTAAAAGTGAAGTTGGA+TGG | + | chr8_4:54425558-54425577 | Msa1334110:intron | 40.0% | |
| CTTCCCAGGAAGATAATGTA+TGG | + | chr8_4:54425590-54425609 | Msa1334110:intron | 40.0% | |
| TACAATGGCAACTTCAGTAG+TGG | - | chr8_4:54425623-54425642 | None:intergenic | 40.0% | |
| AGAATCCAGAAAGCTGCTAT+TGG | + | chr8_4:54425715-54425734 | Msa1334110:CDS | 40.0% | |
| ! | TTCCTGAATTTTCTTCGTGC+AGG | + | chr8_4:54425847-54425866 | Msa1334110:intron | 40.0% |
| TATCATTCGAACCAGAACCA+AGG | - | chr8_4:54425873-54425892 | None:intergenic | 40.0% | |
| GGAAAAGATTGGGAATTGGA+TGG | + | chr8_4:54425898-54425917 | Msa1334110:CDS | 40.0% | |
| ! | ACTTTTGACCCTAGGAACAA+TGG | - | chr8_4:54426409-54426428 | None:intergenic | 40.0% |
| AAGTCCTATTTCCTCACTAG+AGG | + | chr8_4:54426464-54426483 | Msa1334110:CDS | 40.0% | |
| TTTGCCTCTAGTGAGGAAAT+AGG | - | chr8_4:54426471-54426490 | None:intergenic | 40.0% | |
| ATTTCCTCACTAGAGGCAAA+TGG | + | chr8_4:54426471-54426490 | Msa1334110:CDS | 40.0% | |
| CGAGAGCTCAACTAAAGTAA+AGG | - | chr8_4:54426508-54426527 | None:intergenic | 40.0% | |
| TTACCAGAGTTGCAGAAAGT+TGG | + | chr8_4:54426538-54426557 | Msa1334110:CDS | 40.0% | |
| TACCAGAGTTGCAGAAAGTT+GGG | + | chr8_4:54426539-54426558 | Msa1334110:CDS | 40.0% | |
| GGGTATCAGTTATTGACGAT+AGG | + | chr8_4:54426559-54426578 | Msa1334110:CDS | 40.0% | |
| GCATAGATGAAAACAGTTCG+AGG | + | chr8_4:54426679-54426698 | Msa1334110:three_prime_UTR | 40.0% | |
| CAAGGCCAAGCAAAATAGAT+AGG | - | chr8_4:54426856-54426875 | None:intergenic | 40.0% | |
| AATACGACAGGTGTGTATGT+TGG | + | chr8_4:54426895-54426914 | Msa1334110:three_prime_UTR | 40.0% | |
| ATACGACAGGTGTGTATGTT+GGG | + | chr8_4:54426896-54426915 | Msa1334110:three_prime_UTR | 40.0% | |
| GTATGTTGGGTTCTCTCAAT+CGG | + | chr8_4:54426909-54426928 | Msa1334110:three_prime_UTR | 40.0% | |
| TATGTTGGGTTCTCTCAATC+GGG | + | chr8_4:54426910-54426929 | Msa1334110:three_prime_UTR | 40.0% | |
| ! | TCACTCAAGTTGCAAAGCAT+TGG | + | chr8_4:54426945-54426964 | Msa1334110:three_prime_UTR | 40.0% |
| ! | TACATAAGAGCACAACGCAT+AGG | - | chr8_4:54427017-54427036 | None:intergenic | 40.0% |
| !! | TTCACGCGCCTACCTTATTT+TGG | + | chr8_4:54422579-54422598 | Msa1334110:five_prime_UTR | 45.0% |
| ! | GCTTTGTTGCTCGACTTCAA+TGG | + | chr8_4:54422631-54422650 | Msa1334110:exon | 45.0% |
| AATTGTGGTTGTCGGTGATG+TGG | + | chr8_4:54422688-54422707 | Msa1334110:CDS | 45.0% | |
| ! | CTAGTTGGTGTGGAAATAGC+GGG | + | chr8_4:54423659-54423678 | Msa1334110:intron | 45.0% |
| ! | GCTTTTCATTTAGGGAGAGG+GGG | - | chr8_4:54424169-54424188 | None:intergenic | 45.0% |
| ! | CGCTTTTCATTTAGGGAGAG+GGG | - | chr8_4:54424170-54424189 | None:intergenic | 45.0% |
| ! | CACGCTTTTCATTTAGGGAG+AGG | - | chr8_4:54424172-54424191 | None:intergenic | 45.0% |
| ! | GCGTGCACGCTTTTCATTTA+GGG | - | chr8_4:54424177-54424196 | None:intergenic | 45.0% |
| ! | TGCGTGCACGCTTTTCATTT+AGG | - | chr8_4:54424178-54424197 | None:intergenic | 45.0% |
| GAGTTCAGCTACAGCTAGAA+TGG | + | chr8_4:54424380-54424399 | Msa1334110:CDS | 45.0% | |
| GGTTTACCCCCACATGAAAA+TGG | - | chr8_4:54424922-54424941 | None:intergenic | 45.0% | |
| GAAAAAAGCTGCTGTCTGCA+AGG | + | chr8_4:54424950-54424969 | Msa1334110:CDS | 45.0% | |
| !! | TTGAAGCAAACTGGCTCTGA+TGG | - | chr8_4:54425144-54425163 | None:intergenic | 45.0% |
| !!! | GATGGCCTTTTTTACTTCCC+AGG | + | chr8_4:54425576-54425595 | Msa1334110:intron | 45.0% |
| AGCAGCTTTCTGGATTCTCT+TGG | - | chr8_4:54425713-54425732 | None:intergenic | 45.0% | |
| GTGTACCAATAGCAGCTTTC+TGG | - | chr8_4:54425723-54425742 | None:intergenic | 45.0% | |
| AGATTCTGTGTTGCACCTGT+GGG | - | chr8_4:54425784-54425803 | None:intergenic | 45.0% | |
| AATCTCTTCTCTAGCAGTGC+TGG | + | chr8_4:54425799-54425818 | Msa1334110:intron | 45.0% | |
| ! | AATTTTCTTCGTGCAGGCCT+TGG | + | chr8_4:54425853-54425872 | Msa1334110:intron | 45.0% |
| GATTGGGAATTGGATGGTGA+TGG | + | chr8_4:54425904-54425923 | Msa1334110:CDS | 45.0% | |
| !! | TTGGATGGTGATGGTGATCA+TGG | + | chr8_4:54425913-54425932 | Msa1334110:CDS | 45.0% |
| ! | AATTTGGAGTGGGGGAAATC+AGG | - | chr8_4:54426038-54426057 | None:intergenic | 45.0% |
| !! | TGCCTGGCCATTTTCTGTTT+TGG | + | chr8_4:54426133-54426152 | Msa1334110:intron | 45.0% |
| CACCAAAACAGAAAATGGCC+AGG | - | chr8_4:54426138-54426157 | None:intergenic | 45.0% | |
| !! | CTGGCCATTTTCTGTTTTGG+TGG | + | chr8_4:54426136-54426155 | Msa1334110:intron | 45.0% |
| ! | TCGCTCAAACTTTTGACCCT+AGG | - | chr8_4:54426417-54426436 | None:intergenic | 45.0% |
| CGAGGACATGAGAAGCTTAA+AGG | + | chr8_4:54426437-54426456 | Msa1334110:CDS | 45.0% | |
| TGTACCATTTGCCTCTAGTG+AGG | - | chr8_4:54426478-54426497 | None:intergenic | 45.0% | |
| ACTTTAGTTGAGCTCTCGGA+AGG | + | chr8_4:54426510-54426529 | Msa1334110:CDS | 45.0% | |
| TACCCAACTTTCTGCAACTC+TGG | - | chr8_4:54426544-54426563 | None:intergenic | 45.0% | |
| TACGCATGCTTATCATAGGC+AGG | + | chr8_4:54427035-54427054 | Msa1334110:three_prime_UTR | 45.0% | |
| ACGTGCTGCCAACTAAAGAG+TGG | - | chr8_4:54422553-54422572 | None:intergenic | 50.0% | |
| AGAAGAAGAAGAAGACGCGG+CGG | - | chr8_4:54422657-54422676 | None:intergenic | 50.0% | |
| ! | CTGGAGGAATTGAAGTGCCT+TGG | - | chr8_4:54422849-54422868 | None:intergenic | 50.0% |
| ! | CAAGGCACTTCAATTCCTCC+AGG | + | chr8_4:54422847-54422866 | Msa1334110:CDS | 50.0% |
| AGCTATGCTATGCTCTTGGC+TGG | + | chr8_4:54422933-54422952 | Msa1334110:intron | 50.0% | |
| GCTATGCTATGCTCTTGGCT+GGG | + | chr8_4:54422934-54422953 | Msa1334110:intron | 50.0% | |
| GTCTGGCTGCAGTGCAATAT+AGG | - | chr8_4:54423533-54423552 | None:intergenic | 50.0% | |
| TATTGCACTGCAGCCAGACT+TGG | + | chr8_4:54423534-54423553 | Msa1334110:intron | 50.0% | |
| !! | CCTGTAAAGAGCACCAAGTC+TGG | - | chr8_4:54423550-54423569 | None:intergenic | 50.0% |
| !! | CCAGACTTGGTGCTCTTTAC+AGG | + | chr8_4:54423547-54423566 | Msa1334110:CDS | 50.0% |
| ! | GTGGCCTATTCTAGTTGGTG+TGG | + | chr8_4:54423649-54423668 | Msa1334110:intron | 50.0% |
| CGTGCACGCATACACATTCA+CGG | + | chr8_4:54424188-54424207 | Msa1334110:intron | 50.0% | |
| TGTGAATCTCAGCCTTGGCA+AGG | + | chr8_4:54424834-54424853 | Msa1334110:intron | 50.0% | |
| ! | AAGTAAGTGTCGTTGGTGGG+CGG | + | chr8_4:54424896-54424915 | Msa1334110:CDS | 50.0% |
| AGCTGCTATTGGTACACCAG+AGG | + | chr8_4:54425726-54425745 | Msa1334110:CDS | 50.0% | |
| !! | CTTGCACATAATGGACCCAC+AGG | + | chr8_4:54425766-54425785 | Msa1334110:CDS | 50.0% |
| GAGATTCTGTGTTGCACCTG+TGG | - | chr8_4:54425785-54425804 | None:intergenic | 50.0% | |
| GGCCTGCACGAAGAAAATTC+AGG | - | chr8_4:54425852-54425871 | None:intergenic | 50.0% | |
| ATGTGGCCGAACACAACCAA+AGG | - | chr8_4:54426306-54426325 | None:intergenic | 50.0% | |
| ATGCACAAAGAGCTCGCACA+TGG | + | chr8_4:54426324-54426343 | Msa1334110:CDS | 50.0% | |
| AAAGAGCTCGCACATGGCAA+GGG | + | chr8_4:54426330-54426349 | Msa1334110:CDS | 50.0% | |
| ! | TCGCACATGGCAAGGGTTTT+AGG | + | chr8_4:54426337-54426356 | Msa1334110:CDS | 50.0% |
| TGAATGGGGCCATTGTTCCT+AGG | + | chr8_4:54426397-54426416 | Msa1334110:CDS | 50.0% | |
| GAATGGGGCCATTGTTCCTA+GGG | + | chr8_4:54426398-54426417 | Msa1334110:CDS | 50.0% | |
| GGTCAAAAGTTTGAGCGACG+AGG | + | chr8_4:54426419-54426438 | Msa1334110:CDS | 50.0% | |
| GGAGGGCTCCACTCTTTAGT+TGG | + | chr8_4:54422542-54422561 | Msa1334110:five_prime_UTR | 55.0% | |
| GCACGCATACACATTCACGG+AGG | + | chr8_4:54424191-54424210 | Msa1334110:intron | 55.0% | |
| TCCTGATGCCTCACCTAGCA+TGG | + | chr8_4:54424442-54424461 | Msa1334110:intron | 55.0% | |
| ! | TCCATGCTAGGTGAGGCATC+AGG | - | chr8_4:54424446-54424465 | None:intergenic | 55.0% |
| !! | GTGGGCGGCCATTTTCATGT+GGG | + | chr8_4:54424911-54424930 | Msa1334110:CDS | 55.0% |
| !! | TGGGCGGCCATTTTCATGTG+GGG | + | chr8_4:54424912-54424931 | Msa1334110:CDS | 55.0% |
| GATGGTGATCATGGTGACCC+AGG | + | chr8_4:54425922-54425941 | Msa1334110:CDS | 55.0% | |
| GTGCGAGCTCTTTGTGCATG+TGG | - | chr8_4:54426323-54426342 | None:intergenic | 55.0% | |
| CAAAGAGCTCGCACATGGCA+AGG | + | chr8_4:54426329-54426348 | Msa1334110:CDS | 55.0% | |
| GGGTTCTCTCAATCGGGAAC+AGG | + | chr8_4:54426916-54426935 | Msa1334110:three_prime_UTR | 55.0% | |
| CACGGAGGCAGACAATCCCA+TGG | + | chr8_4:54424206-54424225 | Msa1334110:intron | 60.0% | |
| AAGCCACGTGCTCCTTGCCA+AGG | - | chr8_4:54424849-54424868 | None:intergenic | 60.0% | |
| !! | GGTGGGCGGCCATTTTCATG+TGG | + | chr8_4:54424910-54424929 | Msa1334110:CDS | 60.0% |
| !! | GGGCGGCCATTTTCATGTGG+GGG | + | chr8_4:54424913-54424932 | Msa1334110:CDS | 60.0% |
| CTTCGTGCAGGCCTTGGTTC+TGG | + | chr8_4:54425859-54425878 | Msa1334110:intron | 60.0% | |
| ! | CAGCCTTGGCAAGGAGCACG+TGG | + | chr8_4:54424843-54424862 | Msa1334110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54422537 | 54427183 | 54422537 | ID=Msa1334110;Name=Msa1334110 |
| chr8_4 | mRNA | 54422537 | 54427183 | 54422537 | ID=Msa1334110-mRNA-1;Parent=Msa1334110;Name=Msa1334110-mRNA-1;_AED=0.19;_eAED=0.19;_QI=113|0.87|0.88|1|0.75|0.77|9|563|322 |
| chr8_4 | exon | 54422537 | 54422709 | 54422537 | ID=Msa1334110-mRNA-1:exon:16905;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54422818 | 54422868 | 54422818 | ID=Msa1334110-mRNA-1:exon:16906;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54423547 | 54423580 | 54423547 | ID=Msa1334110-mRNA-1:exon:16907;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54423879 | 54423993 | 54423879 | ID=Msa1334110-mRNA-1:exon:16908;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54424369 | 54424401 | 54424369 | ID=Msa1334110-mRNA-1:exon:16909;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54424846 | 54424971 | 54424846 | ID=Msa1334110-mRNA-1:exon:16910;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54425681 | 54425787 | 54425681 | ID=Msa1334110-mRNA-1:exon:16911;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54425869 | 54425943 | 54425869 | ID=Msa1334110-mRNA-1:exon:16912;Parent=Msa1334110-mRNA-1 |
| chr8_4 | exon | 54426253 | 54427183 | 54426253 | ID=Msa1334110-mRNA-1:exon:16913;Parent=Msa1334110-mRNA-1 |
| chr8_4 | five_prime_UTR | 54422537 | 54422649 | 54422537 | ID=Msa1334110-mRNA-1:five_prime_utr;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54422650 | 54422709 | 54422650 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54422818 | 54422868 | 54422818 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54423547 | 54423580 | 54423547 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54423879 | 54423993 | 54423879 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54424369 | 54424401 | 54424369 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54424846 | 54424971 | 54424846 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54425681 | 54425787 | 54425681 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54425869 | 54425943 | 54425869 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | CDS | 54426253 | 54426620 | 54426253 | ID=Msa1334110-mRNA-1:cds;Parent=Msa1334110-mRNA-1 |
| chr8_4 | three_prime_UTR | 54426621 | 54427183 | 54426621 | ID=Msa1334110-mRNA-1:three_prime_utr;Parent=Msa1334110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
