Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445100 | Q2HVB6 | 54.694 | 490 | 151 | 9 | 9 | 450 | 11 | 477 | 9.15e-148 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa1445100 | -0.832752 | 7.902499e-56 | -8.615850e-47 |
| Msa0021810 | Msa1445100 | 0.809332 | 1.993461e-50 | -8.615850e-47 |
| Msa0030380 | Msa1445100 | 0.800391 | 1.473662e-48 | -8.615850e-47 |
| Msa0044710 | Msa1445100 | 0.810010 | 1.425434e-50 | -8.615850e-47 |
| Msa0084650 | Msa1445100 | 0.806356 | 8.559811e-50 | -8.615850e-47 |
| Msa0095380 | Msa1445100 | 0.813499 | 2.481443e-51 | -8.615850e-47 |
| Msa0107250 | Msa1445100 | 0.805109 | 1.564513e-49 | -8.615850e-47 |
| Msa0107280 | Msa1445100 | 0.802449 | 5.580475e-49 | -8.615850e-47 |
| Msa0110970 | Msa1445100 | 0.800589 | 1.342572e-48 | -8.615850e-47 |
| Msa1367080 | Msa1445100 | 0.805056 | 1.604624e-49 | -8.615850e-47 |
| Msa1403580 | Msa1445100 | -0.830208 | 3.343244e-55 | -8.615850e-47 |
| Msa1404190 | Msa1445100 | 0.809507 | 1.828596e-50 | -8.615850e-47 |
| Msa1417120 | Msa1445100 | 0.819107 | 1.381779e-52 | -8.615850e-47 |
| Msa1439960 | Msa1445100 | 0.802166 | 6.382948e-49 | -8.615850e-47 |
| Msa1443290 | Msa1445100 | -0.815408 | 9.389186e-52 | -8.615850e-47 |
| Msa1445100 | Msa1449250 | -0.800987 | 1.113606e-48 | -8.615850e-47 |
| Msa1445100 | Msa1460470 | 0.917702 | 3.848378e-86 | -8.615850e-47 |
| Msa1445100 | Msa1461250 | -0.811942 | 5.440006e-51 | -8.615850e-47 |
| Msa1445100 | Msa1462500 | 0.800177 | 1.628886e-48 | -8.615850e-47 |
| Msa0621490 | Msa1445100 | 0.801001 | 1.106370e-48 | -8.615850e-47 |
| Msa0649980 | Msa1445100 | 0.804409 | 2.189933e-49 | -8.615850e-47 |
| Msa0689010 | Msa1445100 | 0.805744 | 1.151482e-49 | -8.615850e-47 |
| Msa0712980 | Msa1445100 | 0.811633 | 6.351187e-51 | -8.615850e-47 |
| Msa0734660 | Msa1445100 | 0.827406 | 1.592075e-54 | -8.615850e-47 |
| Msa0743260 | Msa1445100 | 0.843615 | 1.256317e-58 | -8.615850e-47 |
| Msa0743720 | Msa1445100 | 0.804096 | 2.545339e-49 | -8.615850e-47 |
| Msa0775260 | Msa1445100 | 0.806932 | 6.470721e-50 | -8.615850e-47 |
| Msa0776220 | Msa1445100 | 0.821797 | 3.336148e-53 | -8.615850e-47 |
| Msa0790390 | Msa1445100 | -0.816847 | 4.477150e-52 | -8.615850e-47 |
| Msa0790850 | Msa1445100 | 0.803074 | 4.146811e-49 | -8.615850e-47 |
| Msa0812570 | Msa1445100 | 0.802451 | 5.574493e-49 | -8.615850e-47 |
| Msa0813670 | Msa1445100 | 0.816587 | 5.121494e-52 | -8.615850e-47 |
| Msa0813720 | Msa1445100 | 0.826038 | 3.377670e-54 | -8.615850e-47 |
| Msa0813740 | Msa1445100 | 0.803900 | 2.795864e-49 | -8.615850e-47 |
| Msa0824680 | Msa1445100 | 0.821748 | 3.422929e-53 | -8.615850e-47 |
| Msa0172960 | Msa1445100 | -0.802010 | 6.872844e-49 | -8.615850e-47 |
| Msa0173740 | Msa1445100 | 0.808524 | 2.969631e-50 | -8.615850e-47 |
| Msa0173820 | Msa1445100 | 0.807235 | 5.580542e-50 | -8.615850e-47 |
| Msa0182930 | Msa1445100 | 0.800512 | 1.391943e-48 | -8.615850e-47 |
| Msa0183620 | Msa1445100 | 0.810925 | 9.043591e-51 | -8.615850e-47 |
| Msa0188630 | Msa1445100 | 0.807976 | 3.885685e-50 | -8.615850e-47 |
| Msa0188680 | Msa1445100 | -0.814017 | 1.908185e-51 | -8.615850e-47 |
| Msa0199710 | Msa1445100 | 0.801894 | 7.257518e-49 | -8.615850e-47 |
| Msa0215830 | Msa1445100 | 0.809152 | 2.178885e-50 | -8.615850e-47 |
| Msa1264020 | Msa1445100 | 0.818398 | 2.001164e-52 | -8.615850e-47 |
| Msa1280130 | Msa1445100 | 0.806946 | 6.425653e-50 | -8.615850e-47 |
| Msa1300350 | Msa1445100 | -0.819757 | 9.823486e-53 | -8.615850e-47 |
| Msa1306430 | Msa1445100 | 0.832186 | 1.091329e-55 | -8.615850e-47 |
| Msa1328850 | Msa1445100 | 0.805572 | 1.251400e-49 | -8.615850e-47 |
| Msa1334110 | Msa1445100 | 0.800044 | 1.733743e-48 | -8.615850e-47 |
| Msa1337090 | Msa1445100 | 0.805286 | 1.436538e-49 | -8.615850e-47 |
| Msa0378080 | Msa1445100 | 0.818180 | 2.242638e-52 | -8.615850e-47 |
| Msa0414950 | Msa1445100 | -0.802523 | 5.387147e-49 | -8.615850e-47 |
| Msa0436500 | Msa1445100 | 0.801203 | 1.005893e-48 | -8.615850e-47 |
| Msa0465790 | Msa1445100 | 0.803966 | 2.708545e-49 | -8.615850e-47 |
| Msa0480980 | Msa1445100 | 0.805861 | 1.088046e-49 | -8.615850e-47 |
| Msa1012700 | Msa1445100 | 0.802250 | 6.132416e-49 | -8.615850e-47 |
| Msa1084470 | Msa1445100 | 0.806277 | 8.894864e-50 | -8.615850e-47 |
| Msa0262310 | Msa1445100 | 0.801254 | 9.820846e-49 | -8.615850e-47 |
| Msa0270220 | Msa1445100 | -0.822648 | 2.116595e-53 | -8.615850e-47 |
| Msa0279790 | Msa1445100 | 0.809483 | 1.850146e-50 | -8.615850e-47 |
| Msa0287000 | Msa1445100 | 0.800159 | 1.642199e-48 | -8.615850e-47 |
| Msa0307830 | Msa1445100 | -0.811709 | 6.113944e-51 | -8.615850e-47 |
| Msa0317250 | Msa1445100 | 0.802518 | 5.400145e-49 | -8.615850e-47 |
| Msa0320100 | Msa1445100 | 0.811539 | 6.657180e-51 | -8.615850e-47 |
| Msa0332920 | Msa1445100 | 0.806098 | 9.700282e-50 | -8.615850e-47 |
| Msa1171870 | Msa1445100 | 0.828643 | 8.021546e-55 | -8.615850e-47 |
| Msa1187520 | Msa1445100 | 0.806545 | 7.810000e-50 | -8.615850e-47 |
| Msa1199220 | Msa1445100 | 0.800176 | 1.629771e-48 | -8.615850e-47 |
| Msa1203250 | Msa1445100 | 0.806114 | 9.627949e-50 | -8.615850e-47 |
| Msa1206020 | Msa1445100 | 0.811809 | 5.814226e-51 | -8.615850e-47 |
| Msa1217830 | Msa1445100 | 0.817974 | 2.495606e-52 | -8.615850e-47 |
| Msa1217860 | Msa1445100 | 0.805858 | 1.089376e-49 | -8.615850e-47 |
| Msa0488020 | Msa1445100 | 0.800534 | 1.378051e-48 | -8.615850e-47 |
| Msa0518040 | Msa1445100 | 0.808722 | 2.692774e-50 | -8.615850e-47 |
| Msa0521880 | Msa1445100 | 0.802924 | 4.453277e-49 | -8.615850e-47 |
| Msa0532330 | Msa1445100 | 0.800693 | 1.278431e-48 | -8.615850e-47 |
| Msa0546360 | Msa1445100 | 0.809477 | 1.855734e-50 | -8.615850e-47 |
| Msa0553220 | Msa1445100 | -0.808152 | 3.563933e-50 | -8.615850e-47 |
| Msa0579290 | Msa1445100 | 0.800507 | 1.395385e-48 | -8.615850e-47 |
| Msa0581760 | Msa1445100 | 0.802327 | 5.912252e-49 | -8.615850e-47 |
| Msa0591060 | Msa1445100 | 0.825308 | 5.030953e-54 | -8.615850e-47 |
| Msa0591770 | Msa1445100 | 0.806067 | 9.848788e-50 | -8.615850e-47 |
| Msa0842830 | Msa1445100 | 0.813750 | 2.185904e-51 | -8.615850e-47 |
| Msa0850960 | Msa1445100 | 0.809064 | 2.275464e-50 | -8.615850e-47 |
| Msa0853170 | Msa1445100 | 0.802245 | 6.147432e-49 | -8.615850e-47 |
| Msa0863870 | Msa1445100 | 0.823730 | 1.183536e-53 | -8.615850e-47 |
| Msa0874500 | Msa1445100 | 0.800011 | 1.760584e-48 | -8.615850e-47 |
| Msa0900630 | Msa1445100 | 0.829620 | 4.649629e-55 | -8.615850e-47 |
| Msa0926460 | Msa1445100 | 0.807857 | 4.118995e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445100 | MtrunA17_Chr7g0253981 | 54.694 | 490 | 151 | 9 | 9 | 450 | 11 | 477 | 1.76e-151 | 440 |
| Msa1445100 | MtrunA17_Chr5g0401031 | 35.081 | 248 | 136 | 5 | 61 | 286 | 64 | 308 | 1.56e-31 | 126 |
| Msa1445100 | MtrunA17_Chr5g0401031 | 40.404 | 99 | 57 | 2 | 306 | 404 | 234 | 330 | 6.05e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445100 | AT1G28760.1 | 48.214 | 280 | 104 | 6 | 35 | 288 | 32 | 296 | 2.73e-80 | 256 |
| Msa1445100 | AT1G28760.1 | 45.029 | 171 | 73 | 1 | 287 | 436 | 179 | 349 | 1.07e-35 | 138 |
| Msa1445100 | AT5G67610.1 | 32.558 | 301 | 171 | 9 | 14 | 288 | 16 | 310 | 3.98e-36 | 139 |
| Msa1445100 | AT5G67610.1 | 31.818 | 154 | 81 | 4 | 284 | 414 | 192 | 344 | 2.81e-13 | 72.0 |
| Msa1445100 | AT5G67610.2 | 32.907 | 313 | 166 | 10 | 14 | 288 | 16 | 322 | 6.09e-36 | 139 |
| Msa1445100 | AT5G67610.2 | 31.818 | 154 | 81 | 4 | 284 | 414 | 204 | 356 | 2.84e-13 | 72.0 |
| Msa1445100 | AT3G49840.1 | 31.373 | 306 | 171 | 10 | 11 | 288 | 21 | 315 | 2.59e-31 | 125 |
| Msa1445100 | AT3G49840.2 | 31.596 | 307 | 170 | 11 | 11 | 288 | 21 | 316 | 3.32e-31 | 125 |
Find 126 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAGCGCTTTCAAGTTTC+TGG | 0.142536 | tig0030941:+25342 | Msa1445100:CDS |
| AATTCAATTCTTCAGAGTTT+TGG | 0.223809 | tig0030941:+26276 | Msa1445100:CDS |
| AATTCAATTCTTCAGAGTTT+TGG | 0.223809 | tig0030941:+27393 | Msa1445100:CDS |
| GGAACCCAACTGCTAATAAT+TGG | 0.267514 | tig0030941:-25894 | None:intergenic |
| GTATCTCCTTCCTTACTATT+AGG | 0.278382 | tig0030941:+25303 | Msa1445100:CDS |
| CAGTAACAATAGTGTAATTT+AGG | 0.282258 | tig0030941:+29001 | Msa1445100:three_prime_UTR |
| GGTTGCTCTTTCTGTACTAC+TGG | 0.292104 | tig0030941:+26903 | Msa1445100:intron |
| CGCCTTATTTGTCTTGCAAT+TGG | 0.293280 | tig0030941:+25849 | Msa1445100:CDS |
| AATGGAGGGGTCTTCATAAA+TGG | 0.304549 | tig0030941:+25601 | Msa1445100:CDS |
| AAATGGGCAATGCGCGTTAC+TGG | 0.321526 | tig0030941:+27909 | Msa1445100:CDS |
| ATTGAACTACCATAATAAAA+TGG | 0.322030 | tig0030941:-25915 | None:intergenic |
| GGTTGGTCAGTTTGTGAAAT+GGG | 0.325806 | tig0030941:+27011 | Msa1445100:CDS |
| ACCTCTTGCAATTGGAGCTT+TGG | 0.333504 | tig0030941:+28266 | Msa1445100:CDS |
| CGCGTTACTGGAGCTGCTTT+AGG | 0.336657 | tig0030941:+27039 | Msa1445100:CDS |
| CTGGAGCTGCTTTAGGCTAC+TGG | 0.348633 | tig0030941:+26938 | Msa1445100:CDS |
| TATTCTAACCAACATGTAGA+TGG | 0.350556 | tig0030941:+29041 | Msa1445100:three_prime_UTR |
| ACTGCTTCCAAACGAGAGTT+TGG | 0.354224 | tig0030941:+28874 | Msa1445100:three_prime_UTR |
| TGTACTACTGGGTATCATCT+TGG | 0.358173 | tig0030941:+26915 | Msa1445100:CDS |
| TCTTCGATAAAATTGCTTCA+TGG | 0.364076 | tig0030941:+28318 | Msa1445100:CDS |
| TGTACTACTTGGTATCATCT+TGG | 0.366574 | tig0030941:+27797 | Msa1445100:CDS |
| CAAAGTAACATGTAATGAAT+TGG | 0.368836 | tig0030941:-25394 | None:intergenic |
| GACAATAAATTTGACATGAT+TGG | 0.374794 | tig0030941:-29104 | None:intergenic |
| GACGAGGTTGAGAGAGAAAT+GGG | 0.380849 | tig0030941:-24967 | None:intergenic |
| GAAGGAGATACATCTAAAAC+TGG | 0.381640 | tig0030941:-25291 | None:intergenic |
| GCTTGCGGTTTGGAAAATTC+AGG | 0.383497 | tig0030941:-29077 | None:intergenic |
| GGCTCCAATTATTAGCAGTT+GGG | 0.386329 | tig0030941:+25890 | Msa1445100:CDS |
| ATCCAATTGCAAGACAAATA+AGG | 0.387359 | tig0030941:-25851 | None:intergenic |
| TGACGAGGTTGAGAGAGAAA+TGG | 0.389871 | tig0030941:-24968 | None:intergenic |
| GGGTTGGTCAGTTTGTGAAA+TGG | 0.392239 | tig0030941:+27010 | Msa1445100:CDS |
| CAATTCATTACATGTTACTT+TGG | 0.395185 | tig0030941:+25395 | Msa1445100:CDS |
| ATTGATACACCTCTTGCAAT+TGG | 0.395313 | tig0030941:+28258 | Msa1445100:CDS |
| TATGGTAGTTCAATGGCTAT+AGG | 0.395624 | tig0030941:+25924 | Msa1445100:CDS |
| GGGGAGGCAGGAAGGGGAAA+TGG | 0.397341 | tig0030941:+28907 | Msa1445100:three_prime_UTR |
| AATTTACGATCATAGAGAAT+TGG | 0.399637 | tig0030941:-27374 | None:intergenic |
| CATGTCAAATTTATTGTCGT+TGG | 0.401820 | tig0030941:+29109 | Msa1445100:three_prime_UTR |
| GTCTCGACCAAACTCTCGTT+TGG | 0.408738 | tig0030941:-28881 | None:intergenic |
| GGGTTGCTCAGTTTGTGAAA+TGG | 0.409305 | tig0030941:+27892 | Msa1445100:CDS |
| GGTTGCTCAGTTTGTGAAAT+GGG | 0.425437 | tig0030941:+27893 | Msa1445100:CDS |
| GTTGCTCTTTCTGTACTACT+TGG | 0.428228 | tig0030941:+27786 | Msa1445100:CDS |
| TTGTTACCTTTGAGAGTAAC+GGG | 0.433137 | tig0030941:-25041 | None:intergenic |
| CAAGATTGACGGTGAAATAC+CGG | 0.436076 | tig0030941:+25671 | Msa1445100:CDS |
| ATCTTGGCTGGAGCTGCTTT+AGG | 0.440307 | tig0030941:+26931 | Msa1445100:CDS |
| GATTGGTGAGGCTTGCGGTT+TGG | 0.444532 | tig0030941:-29087 | None:intergenic |
| TGGCTCCAATTATTAGCAGT+TGG | 0.447665 | tig0030941:+25889 | Msa1445100:CDS |
| AATGGGCAATGCGCGTTACT+GGG | 0.447852 | tig0030941:+27910 | Msa1445100:CDS |
| CTGGAGCTGCTATAGGCTAC+TGG | 0.452288 | tig0030941:+27820 | Msa1445100:CDS |
| ATTGGAGCTTTGGTCTCTTG+TGG | 0.453059 | tig0030941:+28276 | Msa1445100:CDS |
| AAGATGGCAGTGTGGATGCC+GGG | 0.459320 | tig0030941:+26989 | Msa1445100:CDS |
| AAGATGGCAGTGTGGATGCC+GGG | 0.459320 | tig0030941:+27871 | Msa1445100:CDS |
| AAGCGCGCGGGTGAATTTGA+TGG | 0.460335 | tig0030941:+24929 | None:intergenic |
| GAGAGTTTGGTCGAGACGAT+GGG | 0.461666 | tig0030941:+28887 | Msa1445100:three_prime_UTR |
| GAGACGATGGGGAGGCAGGA+AGG | 0.463332 | tig0030941:+28899 | Msa1445100:three_prime_UTR |
| GGGGTCTTCATAAATGGATC+TGG | 0.463704 | tig0030941:+25607 | Msa1445100:CDS |
| AGACGATGGGGAGGCAGGAA+GGG | 0.465219 | tig0030941:+28900 | Msa1445100:three_prime_UTR |
| AATTTACGATCATAGAGTAT+TGG | 0.466939 | tig0030941:-26257 | None:intergenic |
| GACGATGGGGAGGCAGGAAG+GGG | 0.469401 | tig0030941:+28901 | Msa1445100:three_prime_UTR |
| TCATAGAGAATTGGTGCAAA+AGG | 0.472297 | tig0030941:-27365 | None:intergenic |
| GGTCGAGACGATGGGGAGGC+AGG | 0.479487 | tig0030941:+28895 | Msa1445100:three_prime_UTR |
| CTATAGGCTACTGGAATGTC+AGG | 0.482183 | tig0030941:+27829 | Msa1445100:CDS |
| TTTGTTATTTCAAAAGAAGA+TGG | 0.483979 | tig0030941:+26973 | Msa1445100:CDS |
| TTTGTTATTTCAAAAGAAGA+TGG | 0.483979 | tig0030941:+27855 | Msa1445100:CDS |
| ATCTTGGCTGGAGCTGCTAT+AGG | 0.484098 | tig0030941:+27813 | Msa1445100:CDS |
| AGCGCGCGGGTGAATTTGAT+GGG | 0.485644 | tig0030941:+24930 | None:intergenic |
| TCATAGAGTATTGGTGCAAA+AGG | 0.486384 | tig0030941:-26248 | None:intergenic |
| CGAGAGTTTGGTCGAGACGA+TGG | 0.489222 | tig0030941:+28886 | Msa1445100:three_prime_UTR |
| CTACTTGGTATCATCTTGGC+TGG | 0.491465 | tig0030941:+27801 | Msa1445100:CDS |
| CTTTAGGCTACTGGACTGTC+AGG | 0.493341 | tig0030941:+26947 | Msa1445100:CDS |
| ATTAGATTGACCTAATAGTA+AGG | 0.496105 | tig0030941:-25313 | None:intergenic |
| GGCAGTGTGGATGCCGGGGT+TGG | 0.496129 | tig0030941:+26994 | Msa1445100:CDS |
| GGGAGGGAATTGTTCATTGT+CGG | 0.503603 | tig0030941:-25021 | None:intergenic |
| AGAGCAAGCTTTAGCTGAAA+GGG | 0.504156 | tig0030941:+28799 | Msa1445100:CDS |
| CAAGATCAGCAATGGAAAGA+AGG | 0.510129 | tig0030941:+28736 | Msa1445100:intron |
| CTACTGGGTATCATCTTGGC+TGG | 0.511645 | tig0030941:+26919 | Msa1445100:CDS |
| GAAGATGGCAGTGTGGATGC+CGG | 0.514872 | tig0030941:+26988 | Msa1445100:CDS |
| GAAGATGGCAGTGTGGATGC+CGG | 0.514872 | tig0030941:+27870 | Msa1445100:CDS |
| TCAACATATCTAGTTTCATA+AGG | 0.515189 | tig0030941:-25645 | None:intergenic |
| GTTGGTCAGTTTGTGAAATG+GGG | 0.520998 | tig0030941:+27012 | Msa1445100:CDS |
| CGATAAAATTGCTTCATGGA+TGG | 0.523892 | tig0030941:+28322 | Msa1445100:CDS |
| TTGGTCAGTTTGTGAAATGG+GGG | 0.525508 | tig0030941:+27013 | Msa1445100:CDS |
| TTCCCTCCCGTTACTCTCAA+AGG | 0.527324 | tig0030941:+25035 | Msa1445100:CDS |
| TTGGTGCAAAAGGAGTAATT+CGG | 0.531748 | tig0030941:-27355 | None:intergenic |
| TGGATTGACGCTGATGCTGT+TGG | 0.532027 | tig0030941:+25869 | Msa1445100:CDS |
| GAATCGTTGAGCACGCAGAT+TGG | 0.536405 | tig0030941:+28846 | Msa1445100:exon |
| TAGAGCAAGCTTTAGCTGAA+AGG | 0.538223 | tig0030941:+28798 | Msa1445100:CDS |
| TTGGTGCAAAAGGAGTAATT+CGG | 0.538568 | tig0030941:-26238 | None:intergenic |
| GTTGTTACCTTTGAGAGTAA+CGG | 0.540251 | tig0030941:-25042 | None:intergenic |
| TATGTTGATGTCAAGATTGA+CGG | 0.548855 | tig0030941:+25660 | Msa1445100:CDS |
| TTGTGCAGGAATAATACTCT+TGG | 0.549682 | tig0030941:+25555 | Msa1445100:intron |
| GTTGCTCTTTCTGTACTACT+GGG | 0.551932 | tig0030941:+26904 | Msa1445100:CDS |
| CAATGGAAAGAAGGTCACTA+AGG | 0.560625 | tig0030941:+28745 | Msa1445100:CDS |
| GAAGGTCACTAAGGAAGAGT+GGG | 0.575507 | tig0030941:+28754 | Msa1445100:CDS |
| GATTGACCTAATAGTAAGGA+AGG | 0.577185 | tig0030941:-25309 | None:intergenic |
| AGTGCAACTGTGACTGAACC+CGG | 0.582009 | tig0030941:-25690 | None:intergenic |
| TAAATTTGACATGATTGGTG+AGG | 0.589913 | tig0030941:-29099 | None:intergenic |
| AAGATTGACGGTGAAATACC+GGG | 0.590615 | tig0030941:+25672 | Msa1445100:CDS |
| TTTCACAAACTGACCAACCC+CGG | 0.591110 | tig0030941:-27007 | None:intergenic |
| TAATAAAACCATCTACATGT+TGG | 0.591277 | tig0030941:-29049 | None:intergenic |
| AGTGTGAAAATAACGAATGG+AGG | 0.600105 | tig0030941:+25586 | Msa1445100:CDS |
| TAACAATAGTGTAATTTAGG+TGG | 0.600269 | tig0030941:+29004 | Msa1445100:three_prime_UTR |
| GTGTGAAAATAACGAATGGA+GGG | 0.600359 | tig0030941:+25587 | Msa1445100:CDS |
| AGAAGGTCACTAAGGAAGAG+TGG | 0.602449 | tig0030941:+28753 | Msa1445100:CDS |
| TTTCACAAACTGAGCAACCC+CGG | 0.604583 | tig0030941:-27889 | None:intergenic |
| ATGGGCAATGCGCGTTACTG+GGG | 0.605892 | tig0030941:+27911 | Msa1445100:CDS |
| TACCTTTGAGAGTAACGGGA+GGG | 0.606197 | tig0030941:-25037 | None:intergenic |
| GAACTTACCTATGAAAACAA+AGG | 0.606356 | tig0030941:-25461 | None:intergenic |
| GGTATCTCAAGATTCAAGCT+CGG | 0.614150 | tig0030941:+25363 | Msa1445100:CDS |
| ACCAAAGCTCCAATTGCAAG+AGG | 0.617168 | tig0030941:-28267 | None:intergenic |
| GTTTGGTCGAGACGATGGGG+AGG | 0.624441 | tig0030941:+28891 | Msa1445100:three_prime_UTR |
| GACATGATTGGTGAGGCTTG+CGG | 0.627488 | tig0030941:-29092 | None:intergenic |
| GTCACAGTTGCACTTGACGA+AGG | 0.629126 | tig0030941:+25699 | Msa1445100:CDS |
| GTAGATTGTAAGAAGCGCGC+GGG | 0.633998 | tig0030941:+24917 | None:intergenic |
| TGTGAAAATAACGAATGGAG+GGG | 0.647246 | tig0030941:+25588 | Msa1445100:CDS |
| AATGAACACCTGCAAAACAA+AGG | 0.647279 | tig0030941:-27937 | None:intergenic |
| GTCAGTGTGAAAATAACGAA+TGG | 0.648823 | tig0030941:+25583 | Msa1445100:CDS |
| TCATAAATGGATCTGGAGTG+CGG | 0.653486 | tig0030941:+25614 | Msa1445100:CDS |
| GCGCGCGGGTGAATTTGATG+GGG | 0.660087 | tig0030941:+24931 | Msa1445100:exon |
| AGAGTTTGGTCGAGACGATG+GGG | 0.660630 | tig0030941:+28888 | Msa1445100:three_prime_UTR |
| GTCACTAAGGAAGAGTGGGA+TGG | 0.660795 | tig0030941:+28758 | Msa1445100:CDS |
| TTCAAAAGAAGATGGCAGTG+TGG | 0.670624 | tig0030941:+26981 | Msa1445100:CDS |
| TTCAAAAGAAGATGGCAGTG+TGG | 0.670624 | tig0030941:+27863 | Msa1445100:CDS |
| AGTAGATTGTAAGAAGCGCG+CGG | 0.676795 | tig0030941:+24916 | None:intergenic |
| AGATGGCAGTGTGGATGCCG+GGG | 0.677423 | tig0030941:+26990 | Msa1445100:CDS |
| AGATGGCAGTGTGGATGCCG+GGG | 0.677423 | tig0030941:+27872 | Msa1445100:CDS |
| GCAGGAATAATACTCTTGGA+TGG | 0.680449 | tig0030941:+25559 | Msa1445100:intron |
| AGAGAGTCAAGAAAATGACG+AGG | 0.741350 | tig0030941:-24983 | None:intergenic |
| TTACCTTTGAGAGTAACGGG+AGG | 0.749855 | tig0030941:-25038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCATCTTTAAATTA+CGG | + | tig0030941:26397-26416 | Msa1445100:intron | 10.0% |
| !!! | GTATATAATAATTTAATTTG+TGG | + | tig0030941:26703-26722 | Msa1445100:intron | 10.0% |
| !!! | GTATATAATAATTTAATTTG+TGG | + | tig0030941:26703-26722 | Msa1445100:intron | 10.0% |
| !! | AATAAATAAAGAAAATGATT+TGG | - | tig0030941:28177-28196 | None:intergenic | 10.0% |
| !! | GATGATTAATATAATTTAAA+TGG | + | tig0030941:28428-28447 | Msa1445100:intron | 10.0% |
| !!! | TTTCCATTTTTATATAATAT+AGG | + | tig0030941:28616-28635 | Msa1445100:intron | 10.0% |
| !!! | ATTTTGTTATGTAATCTTTT+TGG | - | tig0030941:25438-25457 | None:intergenic | 15.0% |
| !!! | TTTCTAAAATAAATTAAGTG+TGG | - | tig0030941:26494-26513 | None:intergenic | 15.0% |
| !! | AAATTATTATATACTGAAAG+AGG | - | tig0030941:26697-26716 | None:intergenic | 15.0% |
| !! | TGTCTATTACAATTATAATA+CGG | + | tig0030941:27470-27489 | Msa1445100:intron | 15.0% |
| !! | TATAATTTAAATGGTTTCAA+TGG | + | tig0030941:28437-28456 | Msa1445100:intron | 15.0% |
| !! | AAAAAAAAACTTACAACTTA+TGG | + | tig0030941:28477-28496 | Msa1445100:intron | 15.0% |
| !! | GTTCCTATATTATATAAAAA+TGG | - | tig0030941:28622-28641 | None:intergenic | 15.0% |
| !!! | AAATTGATTTTTTCTTCATA+GGG | + | tig0030941:28970-28989 | Msa1445100:three_prime_UTR | 15.0% |
| !! | AAAATTCGAAAATTGAAAAG+GGG | - | tig0030941:25111-25130 | None:intergenic | 20.0% |
| !! | GAAAATTCGAAAATTGAAAA+GGG | - | tig0030941:25112-25131 | None:intergenic | 20.0% |
| !! | AGAAAATTCGAAAATTGAAA+AGG | - | tig0030941:25113-25132 | None:intergenic | 20.0% |
| !! | ATTGAACTACCATAATAAAA+TGG | - | tig0030941:25918-25937 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGGTAGTTCAA+TGG | + | tig0030941:25917-25936 | Msa1445100:CDS | 20.0% |
| !!! | AGTTATAATCATTCTTTTTC+AGG | + | tig0030941:25959-25978 | Msa1445100:CDS | 20.0% |
| !! | GAAATATGTGTATAATACAA+AGG | - | tig0030941:26008-26027 | None:intergenic | 20.0% |
| !!! | TACCTTTCTATTTATCTTTT+AGG | + | tig0030941:26331-26350 | Msa1445100:intron | 20.0% |
| !!! | ACCTTTCTATTTATCTTTTA+GGG | + | tig0030941:26332-26351 | Msa1445100:intron | 20.0% |
| !! | TTATAATTGTAAGACACTAA+GGG | - | tig0030941:26598-26617 | None:intergenic | 20.0% |
| !! | ATTATAATTGTAAGACACTA+AGG | - | tig0030941:26599-26618 | None:intergenic | 20.0% |
| !! | AGTGTCTTACAATTATAATA+CGG | + | tig0030941:26600-26619 | Msa1445100:intron | 20.0% |
| !! | GTCTTTCATCATTTATAATT+TGG | + | tig0030941:26827-26846 | Msa1445100:intron | 20.0% |
| !!! | TTTGTTATTTCAAAAGAAGA+TGG | + | tig0030941:26973-26992 | Msa1445100:CDS | 20.0% |
| !!! | AGTTATAATCATTCTTTTTC+AGG | + | tig0030941:25959-25978 | Msa1445100:CDS | 20.0% |
| !! | GAAATATGTGTATAATACAA+AGG | - | tig0030941:26008-26027 | None:intergenic | 20.0% |
| !! | ACACTAAAACATAAATAGAA+AGG | - | tig0030941:27453-27472 | None:intergenic | 20.0% |
| !! | GTCTTTCATCATTTATAATT+TGG | + | tig0030941:26827-26846 | Msa1445100:intron | 20.0% |
| !!! | TTTGTTATTTCAAAAGAAGA+TGG | + | tig0030941:26973-26992 | Msa1445100:CDS | 20.0% |
| !! | AAAAAAGTCAGAATAAATAG+AGG | - | tig0030941:28219-28238 | None:intergenic | 20.0% |
| !! | AAGAAAAAATCAATTTCTTC+TGG | - | tig0030941:28966-28985 | None:intergenic | 20.0% |
| !!! | GAAATTGATTTTTTCTTCAT+AGG | + | tig0030941:28969-28988 | Msa1445100:three_prime_UTR | 20.0% |
| !! | GTATACAAAAAGTAACAAAA+AGG | - | tig0030941:29147-29166 | None:intergenic | 20.0% |
| !! | TTCTCTTATTCAATTTTCCT+AGG | + | tig0030941:25078-25097 | Msa1445100:intron | 25.0% |
| !! | TCTCTTATTCAATTTTCCTA+GGG | + | tig0030941:25079-25098 | Msa1445100:intron | 25.0% |
| ! | ATTAGATTGACCTAATAGTA+AGG | - | tig0030941:25316-25335 | None:intergenic | 25.0% |
| ! | CAAAGTAACATGTAATGAAT+TGG | - | tig0030941:25397-25416 | None:intergenic | 25.0% |
| !! | CAATTCATTACATGTTACTT+TGG | + | tig0030941:25395-25414 | Msa1445100:CDS | 25.0% |
| !!! | AAATCAACCTTTGTTTTCAT+AGG | + | tig0030941:25454-25473 | Msa1445100:CDS | 25.0% |
| ! | CTTATTTATAATGTTTGTGC+AGG | + | tig0030941:25541-25560 | Msa1445100:intron | 25.0% |
| !! | TCAACATATCTAGTTTCATA+AGG | - | tig0030941:25648-25667 | None:intergenic | 25.0% |
| !!! | CTGTTATTTTCTTGAACTTT+CGG | + | tig0030941:25779-25798 | Msa1445100:intron | 25.0% |
| ! | AATTTACGATCATAGAGTAT+TGG | - | tig0030941:26260-26279 | None:intergenic | 25.0% |
| !! | AATTCAATTCTTCAGAGTTT+TGG | + | tig0030941:26276-26295 | Msa1445100:CDS | 25.0% |
| !! | ATTCAATTCTTCAGAGTTTT+GGG | + | tig0030941:26277-26296 | Msa1445100:CDS | 25.0% |
| ! | AATTTACGATCATAGAGAAT+TGG | - | tig0030941:27377-27396 | None:intergenic | 25.0% |
| !! | AATTCAATTCTTCAGAGTTT+TGG | + | tig0030941:26276-26295 | Msa1445100:CDS | 25.0% |
| !! | ATTCAATTCTTCAGAGTTTT+GGG | + | tig0030941:26277-26296 | Msa1445100:CDS | 25.0% |
| !!! | TTATAATTTGGCTTGTTTAC+CGG | + | tig0030941:27721-27740 | Msa1445100:intron | 25.0% |
| ! | TAGTTACAATTGGCAATATA+TGG | - | tig0030941:28101-28120 | None:intergenic | 25.0% |
| ! | TTAATCATCTATTACTTCCT+TGG | - | tig0030941:28417-28436 | None:intergenic | 25.0% |
| !!! | AAAGCACTGAATCTTATTAT+AGG | + | tig0030941:28547-28566 | Msa1445100:intron | 25.0% |
| ! | CTGAATCTTATTATAGGAAA+TGG | + | tig0030941:28553-28572 | Msa1445100:intron | 25.0% |
| ! | CAATGTTGAATAAGAAACAA+AGG | - | tig0030941:28714-28733 | None:intergenic | 25.0% |
| ! | CAGTAACAATAGTGTAATTT+AGG | + | tig0030941:29001-29020 | Msa1445100:three_prime_UTR | 25.0% |
| ! | TAACAATAGTGTAATTTAGG+TGG | + | tig0030941:29004-29023 | Msa1445100:three_prime_UTR | 25.0% |
| ! | TAATAAAACCATCTACATGT+TGG | - | tig0030941:29052-29071 | None:intergenic | 25.0% |
| ! | GACAATAAATTTGACATGAT+TGG | - | tig0030941:29107-29126 | None:intergenic | 25.0% |
| ATAAGAGAATCAGAAGAAGA+GGG | - | tig0030941:25067-25086 | None:intergenic | 30.0% | |
| AATAAGAGAATCAGAAGAAG+AGG | - | tig0030941:25068-25087 | None:intergenic | 30.0% | |
| TGTAATCTATACATCGCATA+TGG | + | tig0030941:25142-25161 | Msa1445100:intron | 30.0% | |
| ATTAAGCATACAGCTACAAA+AGG | - | tig0030941:25195-25214 | None:intergenic | 30.0% | |
| !!! | CTTTTTGGAATCACAAAAGA+TGG | - | tig0030941:25423-25442 | None:intergenic | 30.0% |
| GAACTTACCTATGAAAACAA+AGG | - | tig0030941:25464-25483 | None:intergenic | 30.0% | |
| TATGTTGATGTCAAGATTGA+CGG | + | tig0030941:25660-25679 | Msa1445100:CDS | 30.0% | |
| ATCCAATTGCAAGACAAATA+AGG | - | tig0030941:25854-25873 | None:intergenic | 30.0% | |
| ! | AGTTGGGTTCCATTTTATTA+TGG | + | tig0030941:25906-25925 | Msa1445100:CDS | 30.0% |
| GCATAACAGTCAGAAAAAAT+TGG | - | tig0030941:26049-26068 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCTGACTGTTATGC+TGG | + | tig0030941:26049-26068 | Msa1445100:intron | 30.0% |
| !!! | TTTTTTCTGACTGTTATGCT+GGG | + | tig0030941:26050-26069 | Msa1445100:intron | 30.0% |
| !!! | AAGACATTTTTTCTTCCAGT+TGG | - | tig0030941:26089-26108 | None:intergenic | 30.0% |
| ! | GTCTTTTATCTTACCATGTA+TGG | + | tig0030941:26104-26123 | Msa1445100:intron | 30.0% |
| TATTGTGATATGTTTCAGCT+TGG | + | tig0030941:26213-26232 | Msa1445100:intron | 30.0% | |
| GCCCTAAAAGATAAATAGAA+AGG | - | tig0030941:26336-26355 | None:intergenic | 30.0% | |
| ! | TTATAATACGGTTTTCGCTT+TGG | + | tig0030941:26612-26631 | Msa1445100:intron | 30.0% |
| ! | TATAATACGGTTTTCGCTTT+GGG | + | tig0030941:26613-26632 | Msa1445100:intron | 30.0% |
| !!! | AGAATGCATTTTTAGCAGAT+GGG | - | tig0030941:26802-26821 | None:intergenic | 30.0% |
| ! | ACTTTACCTCTATGATTTGT+AGG | + | tig0030941:26882-26901 | Msa1445100:intron | 30.0% |
| GCATAACAGTCAGAAAAAAT+TGG | - | tig0030941:26049-26068 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCTGACTGTTATGC+AGG | + | tig0030941:26049-26068 | Msa1445100:intron | 30.0% |
| !!! | TTTTTTCTGACTGTTATGCA+GGG | + | tig0030941:27167-27186 | Msa1445100:intron | 30.0% |
| !!! | AAGACATTTTTTCTTCCAGT+TGG | - | tig0030941:26089-26108 | None:intergenic | 30.0% |
| ! | GTCTTTTATCTTACCATGTA+TGG | + | tig0030941:26104-26123 | Msa1445100:intron | 30.0% |
| ! | TTATAATACGGTTTTCGCTT+TGG | + | tig0030941:26612-26631 | Msa1445100:intron | 30.0% |
| ! | TATAATACGGTTTTCGCTTT+GGG | + | tig0030941:26613-26632 | Msa1445100:intron | 30.0% |
| !!! | TAGAATGCATTTTTAGCAGA+CGG | - | tig0030941:27685-27704 | None:intergenic | 30.0% |
| TTTCATGAAGAATTGATGTC+CGG | - | tig0030941:26861-26880 | None:intergenic | 30.0% | |
| ATTGCCAATTGTAACTATTC+TGG | + | tig0030941:28104-28123 | Msa1445100:intron | 30.0% | |
| ACTTCCAGAATAGTTACAAT+TGG | - | tig0030941:28111-28130 | None:intergenic | 30.0% | |
| TCTTCGATAAAATTGCTTCA+TGG | + | tig0030941:28318-28337 | Msa1445100:CDS | 30.0% | |
| TAATACTTCACTTTAAGCAG+TGG | + | tig0030941:28372-28391 | Msa1445100:intron | 30.0% | |
| TTTGCTTAGTTATTTGTCCA+AGG | + | tig0030941:28397-28416 | Msa1445100:intron | 30.0% | |
| ACAGTAAAAAACCAGCATAT+GGG | - | tig0030941:28659-28678 | None:intergenic | 30.0% | |
| AACAGTAAAAAACCAGCATA+TGG | - | tig0030941:28660-28679 | None:intergenic | 30.0% | |
| TATTCTAACCAACATGTAGA+TGG | + | tig0030941:29041-29060 | Msa1445100:three_prime_UTR | 30.0% | |
| TAAATTTGACATGATTGGTG+AGG | - | tig0030941:29102-29121 | None:intergenic | 30.0% | |
| CATGTCAAATTTATTGTCGT+TGG | + | tig0030941:29109-29128 | Msa1445100:three_prime_UTR | 30.0% | |
| ! | TTGTTACCTTTGAGAGTAAC+GGG | - | tig0030941:25044-25063 | None:intergenic | 35.0% |
| ! | GTTGTTACCTTTGAGAGTAA+CGG | - | tig0030941:25045-25064 | None:intergenic | 35.0% |
| TTGTAGCTGTATGCTTAATG+AGG | + | tig0030941:25196-25215 | Msa1445100:intron | 35.0% | |
| ! | GAAGGAGATACATCTAAAAC+TGG | - | tig0030941:25294-25313 | None:intergenic | 35.0% |
| GTATCTCCTTCCTTACTATT+AGG | + | tig0030941:25303-25322 | Msa1445100:CDS | 35.0% | |
| GATTGACCTAATAGTAAGGA+AGG | - | tig0030941:25312-25331 | None:intergenic | 35.0% | |
| TTGTGCAGGAATAATACTCT+TGG | + | tig0030941:25555-25574 | Msa1445100:intron | 35.0% | |
| GTCAGTGTGAAAATAACGAA+TGG | + | tig0030941:25583-25602 | Msa1445100:CDS | 35.0% | |
| AGTGTGAAAATAACGAATGG+AGG | + | tig0030941:25586-25605 | Msa1445100:CDS | 35.0% | |
| GTGTGAAAATAACGAATGGA+GGG | + | tig0030941:25587-25606 | Msa1445100:CDS | 35.0% | |
| TGTGAAAATAACGAATGGAG+GGG | + | tig0030941:25588-25607 | Msa1445100:CDS | 35.0% | |
| TATGGTAGTTCAATGGCTAT+AGG | + | tig0030941:25924-25943 | Msa1445100:CDS | 35.0% | |
| TTGGTGCAAAAGGAGTAATT+CGG | - | tig0030941:26241-26260 | None:intergenic | 35.0% | |
| !! | TCATAGAGTATTGGTGCAAA+AGG | - | tig0030941:26251-26270 | None:intergenic | 35.0% |
| !!! | TTTATCTTTTAGGGCGTGTT+TGG | + | tig0030941:26341-26360 | Msa1445100:intron | 35.0% |
| AGTACACGAGTAGAATTGTA+GGG | - | tig0030941:26735-26754 | None:intergenic | 35.0% | |
| ! | TTTTAGCAGATGGGCAAATA+TGG | - | tig0030941:26793-26812 | None:intergenic | 35.0% |
| !!! | GAGAATGCATTTTTAGCAGA+TGG | - | tig0030941:26803-26822 | None:intergenic | 35.0% |
| TTGGTGCAAAAGGAGTAATT+CGG | - | tig0030941:26241-26260 | None:intergenic | 35.0% | |
| TCATAGAGAATTGGTGCAAA+AGG | - | tig0030941:27368-27387 | None:intergenic | 35.0% | |
| TCAGCAGAAAATAGATGCTA+AGG | + | tig0030941:27538-27557 | Msa1445100:intron | 35.0% | |
| AGTACACGAGTAGAATTGTA+GGG | - | tig0030941:26735-26754 | None:intergenic | 35.0% | |
| !!! | AGAATGCATTTTTAGCAGAC+GGG | - | tig0030941:27684-27703 | None:intergenic | 35.0% |
| TGTACTACTTGGTATCATCT+TGG | + | tig0030941:27797-27816 | Msa1445100:CDS | 35.0% | |
| AATGAACACCTGCAAAACAA+AGG | - | tig0030941:27940-27959 | None:intergenic | 35.0% | |
| ! | CATATGTGACAGGTATTGTT+AGG | + | tig0030941:27990-28009 | Msa1445100:intron | 35.0% |
| TTTGATGAAGTTGCACAGTA+TGG | + | tig0030941:28150-28169 | Msa1445100:intron | 35.0% | |
| ATTGATACACCTCTTGCAAT+TGG | + | tig0030941:28258-28277 | Msa1445100:CDS | 35.0% | |
| CGATAAAATTGCTTCATGGA+TGG | + | tig0030941:28322-28341 | Msa1445100:CDS | 35.0% | |
| AGAGAGTCAAGAAAATGACG+AGG | - | tig0030941:24986-25005 | None:intergenic | 40.0% | |
| GAACGTAGATTGCAAGAACA+AGG | - | tig0030941:25241-25260 | None:intergenic | 40.0% | |
| TCTACGTTCATTACAACTGC+AGG | + | tig0030941:25252-25271 | Msa1445100:intron | 40.0% | |
| GGTATCTCAAGATTCAAGCT+CGG | + | tig0030941:25363-25382 | Msa1445100:CDS | 40.0% | |
| GCAGGAATAATACTCTTGGA+TGG | + | tig0030941:25559-25578 | Msa1445100:intron | 40.0% | |
| AATGGAGGGGTCTTCATAAA+TGG | + | tig0030941:25601-25620 | Msa1445100:CDS | 40.0% | |
| ! | TCATAAATGGATCTGGAGTG+CGG | + | tig0030941:25614-25633 | Msa1445100:CDS | 40.0% |
| CAAGATTGACGGTGAAATAC+CGG | + | tig0030941:25671-25690 | Msa1445100:CDS | 40.0% | |
| AAGATTGACGGTGAAATACC+GGG | + | tig0030941:25672-25691 | Msa1445100:CDS | 40.0% | |
| ! | AGGTTTGTTTCTTCCATGTC+AGG | + | tig0030941:25719-25738 | Msa1445100:intron | 40.0% |
| TGTTTCTTCCATGTCAGGAA+AGG | + | tig0030941:25724-25743 | Msa1445100:intron | 40.0% | |
| GTTTCTTCCATGTCAGGAAA+GGG | + | tig0030941:25725-25744 | Msa1445100:intron | 40.0% | |
| TTTCTTCCATGTCAGGAAAG+GGG | + | tig0030941:25726-25745 | Msa1445100:intron | 40.0% | |
| !! | CGCCTTATTTGTCTTGCAAT+TGG | + | tig0030941:25849-25868 | Msa1445100:CDS | 40.0% |
| TGGCTCCAATTATTAGCAGT+TGG | + | tig0030941:25889-25908 | Msa1445100:CDS | 40.0% | |
| GGCTCCAATTATTAGCAGTT+GGG | + | tig0030941:25890-25909 | Msa1445100:CDS | 40.0% | |
| GGAACCCAACTGCTAATAAT+TGG | - | tig0030941:25897-25916 | None:intergenic | 40.0% | |
| GGCATGAAATTATTGCCAAC+TGG | + | tig0030941:26071-26090 | Msa1445100:intron | 40.0% | |
| !!! | TTTTAGGGCGTGTTTGGATT+GGG | + | tig0030941:26347-26366 | Msa1445100:intron | 40.0% |
| TGTGTTTGGATTGAGGGTTT+AGG | - | tig0030941:26575-26594 | None:intergenic | 40.0% | |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | - | tig0030941:26581-26600 | None:intergenic | 40.0% |
| ! | TAAGACACTAAGGGTGTGTT+TGG | - | tig0030941:26589-26608 | None:intergenic | 40.0% |
| TCAGCAGAAAATAGCTGCTA+AGG | + | tig0030941:26656-26675 | Msa1445100:intron | 40.0% | |
| CAGTACACGAGTAGAATTGT+AGG | - | tig0030941:26736-26755 | None:intergenic | 40.0% | |
| GAGCAACCTACAAATCATAG+AGG | - | tig0030941:26891-26910 | None:intergenic | 40.0% | |
| GTTGCTCTTTCTGTACTACT+GGG | + | tig0030941:26904-26923 | Msa1445100:CDS | 40.0% | |
| TGTACTACTGGGTATCATCT+TGG | + | tig0030941:26915-26934 | Msa1445100:CDS | 40.0% | |
| TTCAAAAGAAGATGGCAGTG+TGG | + | tig0030941:26981-27000 | Msa1445100:CDS | 40.0% | |
| ! | GGTTGGTCAGTTTGTGAAAT+GGG | + | tig0030941:27011-27030 | Msa1445100:CDS | 40.0% |
| GTTGGTCAGTTTGTGAAATG+GGG | + | tig0030941:27012-27031 | Msa1445100:CDS | 40.0% | |
| TTGGTCAGTTTGTGAAATGG+GGG | + | tig0030941:27013-27032 | Msa1445100:CDS | 40.0% | |
| GGCATGAAATTATTGCCAAC+TGG | + | tig0030941:26071-26090 | Msa1445100:intron | 40.0% | |
| ACTCATTGCTGATCCATACA+TGG | - | tig0030941:27237-27256 | None:intergenic | 40.0% | |
| GCAGAAAATAGATGCTAAGG+AGG | + | tig0030941:27541-27560 | Msa1445100:intron | 40.0% | |
| CAGTACACGAGTAGAATTGT+AGG | - | tig0030941:26736-26755 | None:intergenic | 40.0% | |
| ! | TTTTAGCAGACGGGCAAATA+TGG | - | tig0030941:27675-27694 | None:intergenic | 40.0% |
| ! | ACTTTACCTCTGTGATTTGC+AGG | + | tig0030941:27764-27783 | Msa1445100:intron | 40.0% |
| GTTGCTCTTTCTGTACTACT+TGG | + | tig0030941:26904-26923 | Msa1445100:CDS | 40.0% | |
| TTCAAAAGAAGATGGCAGTG+TGG | + | tig0030941:26981-27000 | Msa1445100:CDS | 40.0% | |
| GGTTGCTCAGTTTGTGAAAT+GGG | + | tig0030941:27893-27912 | Msa1445100:CDS | 40.0% | |
| CAATACCTGTCACATATGAC+AGG | - | tig0030941:27988-28007 | None:intergenic | 40.0% | |
| ! | ACAGGTATTGTTAGGTCACT+TGG | + | tig0030941:27998-28017 | Msa1445100:intron | 40.0% |
| ! | ATTCTGGAAGTTGCATAGCT+TGG | + | tig0030941:28120-28139 | Msa1445100:intron | 40.0% |
| AGTTTAATCCACCCATATGC+TGG | + | tig0030941:28645-28664 | Msa1445100:intron | 40.0% | |
| GTAAAAAACCAGCATATGGG+TGG | - | tig0030941:28656-28675 | None:intergenic | 40.0% | |
| ACATTGCACAAGATCAGCAA+TGG | + | tig0030941:28728-28747 | Msa1445100:intron | 40.0% | |
| CAAGATCAGCAATGGAAAGA+AGG | + | tig0030941:28736-28755 | Msa1445100:intron | 40.0% | |
| CAATGGAAAGAAGGTCACTA+AGG | + | tig0030941:28745-28764 | Msa1445100:CDS | 40.0% | |
| ! | TAGAGCAAGCTTTAGCTGAA+AGG | + | tig0030941:28798-28817 | Msa1445100:CDS | 40.0% |
| ! | AGAGCAAGCTTTAGCTGAAA+GGG | + | tig0030941:28799-28818 | Msa1445100:CDS | 40.0% |
| GACGAGGTTGAGAGAGAAAT+GGG | - | tig0030941:24970-24989 | None:intergenic | 45.0% | |
| TGACGAGGTTGAGAGAGAAA+TGG | - | tig0030941:24971-24990 | None:intergenic | 45.0% | |
| GGGAGGGAATTGTTCATTGT+CGG | - | tig0030941:25024-25043 | None:intergenic | 45.0% | |
| ! | TACCTTTGAGAGTAACGGGA+GGG | - | tig0030941:25040-25059 | None:intergenic | 45.0% |
| ! | TTACCTTTGAGAGTAACGGG+AGG | - | tig0030941:25041-25060 | None:intergenic | 45.0% |
| TGAAAAGGGGAAGAAACCCT+AGG | - | tig0030941:25098-25117 | None:intergenic | 45.0% | |
| !! | TGTGAGCGCTTTCAAGTTTC+TGG | + | tig0030941:25342-25361 | Msa1445100:CDS | 45.0% |
| GGGGTCTTCATAAATGGATC+TGG | + | tig0030941:25607-25626 | Msa1445100:CDS | 45.0% | |
| TTCTTTCCCCTTTCCTGACA+TGG | - | tig0030941:25735-25754 | None:intergenic | 45.0% | |
| ACTCATCGCTGATCCATACA+TGG | - | tig0030941:26120-26139 | None:intergenic | 45.0% | |
| !!! | CTTTTAGGGCGTGTTTGGAT+TGG | + | tig0030941:26346-26365 | Msa1445100:intron | 45.0% |
| ! | GTTTGGATTGGGTTTAGGAG+TGG | + | tig0030941:26358-26377 | Msa1445100:intron | 45.0% |
| GATTGGGTTTAGGAGTGGAA+GGG | + | tig0030941:26363-26382 | Msa1445100:intron | 45.0% | |
| TTTGGATTGAGGGTTTAGGC+GGG | - | tig0030941:26571-26590 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+CGG | - | tig0030941:26572-26591 | None:intergenic | 45.0% | |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | - | tig0030941:26582-26601 | None:intergenic | 45.0% |
| GCAGAAAATAGCTGCTAAGG+AGG | + | tig0030941:26659-26678 | Msa1445100:intron | 45.0% | |
| ATATGGCCAGCAATCATCAC+CGG | - | tig0030941:26776-26795 | None:intergenic | 45.0% | |
| GGTTGCTCTTTCTGTACTAC+TGG | + | tig0030941:26903-26922 | Msa1445100:intron | 45.0% | |
| TTTCACAAACTGACCAACCC+CGG | - | tig0030941:27010-27029 | None:intergenic | 45.0% | |
| !! | GGGTTGGTCAGTTTGTGAAA+TGG | + | tig0030941:27010-27029 | Msa1445100:CDS | 45.0% |
| CTACTTGGTATCATCTTGGC+TGG | + | tig0030941:27801-27820 | Msa1445100:CDS | 45.0% | |
| CTATAGGCTACTGGAATGTC+AGG | + | tig0030941:27829-27848 | Msa1445100:CDS | 45.0% | |
| TTTCACAAACTGAGCAACCC+CGG | - | tig0030941:27892-27911 | None:intergenic | 45.0% | |
| GGGTTGCTCAGTTTGTGAAA+TGG | + | tig0030941:27892-27911 | Msa1445100:CDS | 45.0% | |
| CTAGTCCTGTCATATGTGAC+AGG | + | tig0030941:27980-27999 | Msa1445100:intron | 45.0% | |
| ACCTCTTGCAATTGGAGCTT+TGG | + | tig0030941:28266-28285 | Msa1445100:CDS | 45.0% | |
| ACCAAAGCTCCAATTGCAAG+AGG | - | tig0030941:28270-28289 | None:intergenic | 45.0% | |
| ! | ATTGGAGCTTTGGTCTCTTG+TGG | + | tig0030941:28276-28295 | Msa1445100:CDS | 45.0% |
| AGAAGGTCACTAAGGAAGAG+TGG | + | tig0030941:28753-28772 | Msa1445100:CDS | 45.0% | |
| GAAGGTCACTAAGGAAGAGT+GGG | + | tig0030941:28754-28773 | Msa1445100:CDS | 45.0% | |
| ACTGCTTCCAAACGAGAGTT+TGG | + | tig0030941:28874-28893 | Msa1445100:three_prime_UTR | 45.0% | |
| ! | GCTTGCGGTTTGGAAAATTC+AGG | - | tig0030941:29080-29099 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | - | tig0030941:28464-28483 | None:intergenic | 5.0% |
| TTCCCTCCCGTTACTCTCAA+AGG | + | tig0030941:25035-25054 | Msa1445100:CDS | 50.0% | |
| AGTGCAACTGTGACTGAACC+CGG | - | tig0030941:25693-25712 | None:intergenic | 50.0% | |
| GTCACAGTTGCACTTGACGA+AGG | + | tig0030941:25699-25718 | Msa1445100:CDS | 50.0% | |
| CGCAATTGCTGAAAGTCTGC+AGG | - | tig0030941:25831-25850 | None:intergenic | 50.0% | |
| TGGATTGACGCTGATGCTGT+TGG | + | tig0030941:25869-25888 | Msa1445100:CDS | 50.0% | |
| ! | GGCGTGTTTGGATTGGGTTT+AGG | + | tig0030941:26353-26372 | Msa1445100:intron | 50.0% |
| GGATTGGGTTTAGGAGTGGA+AGG | + | tig0030941:26362-26381 | Msa1445100:intron | 50.0% | |
| TTGGATTGAGGGTTTAGGCG+GGG | - | tig0030941:26570-26589 | None:intergenic | 50.0% | |
| TGCTACCCTGATGTTTGCTC+CGG | + | tig0030941:26754-26773 | Msa1445100:intron | 50.0% | |
| CATCACCGGAGCAAACATCA+GGG | - | tig0030941:26762-26781 | None:intergenic | 50.0% | |
| TCATCACCGGAGCAAACATC+AGG | - | tig0030941:26763-26782 | None:intergenic | 50.0% | |
| TTTGCTCCGGTGATGATTGC+TGG | + | tig0030941:26767-26786 | Msa1445100:intron | 50.0% | |
| CTACTGGGTATCATCTTGGC+TGG | + | tig0030941:26919-26938 | Msa1445100:CDS | 50.0% | |
| ! | ATCTTGGCTGGAGCTGCTTT+AGG | + | tig0030941:26931-26950 | Msa1445100:CDS | 50.0% |
| CTTTAGGCTACTGGACTGTC+AGG | + | tig0030941:26947-26966 | Msa1445100:CDS | 50.0% | |
| CGTCACAGGAGCAAACATCA+GGG | - | tig0030941:27644-27663 | None:intergenic | 50.0% | |
| TCGTCACAGGAGCAAACATC+AGG | - | tig0030941:27645-27664 | None:intergenic | 50.0% | |
| TTTGCTCCTGTGACGATTGC+TGG | + | tig0030941:27649-27668 | Msa1445100:intron | 50.0% | |
| ATATGGCCAGCAATCGTCAC+AGG | - | tig0030941:27658-27677 | None:intergenic | 50.0% | |
| GAGCAACCTGCAAATCACAG+AGG | - | tig0030941:27773-27792 | None:intergenic | 50.0% | |
| ATCTTGGCTGGAGCTGCTAT+AGG | + | tig0030941:27813-27832 | Msa1445100:CDS | 50.0% | |
| AAATGGGCAATGCGCGTTAC+TGG | + | tig0030941:27909-27928 | Msa1445100:CDS | 50.0% | |
| AATGGGCAATGCGCGTTACT+GGG | + | tig0030941:27910-27929 | Msa1445100:CDS | 50.0% | |
| !!! | TGGGGCTACCTTTGTTTTGC+AGG | + | tig0030941:27929-27948 | Msa1445100:CDS | 50.0% |
| GTCACTAAGGAAGAGTGGGA+TGG | + | tig0030941:28758-28777 | Msa1445100:CDS | 50.0% | |
| GAATCGTTGAGCACGCAGAT+TGG | + | tig0030941:28846-28865 | Msa1445100:exon | 50.0% | |
| GTCTCGACCAAACTCTCGTT+TGG | - | tig0030941:28884-28903 | None:intergenic | 50.0% | |
| GAGAGTTTGGTCGAGACGAT+GGG | + | tig0030941:28887-28906 | Msa1445100:three_prime_UTR | 50.0% | |
| AGAGTTTGGTCGAGACGATG+GGG | + | tig0030941:28888-28907 | Msa1445100:three_prime_UTR | 50.0% | |
| GACATGATTGGTGAGGCTTG+CGG | - | tig0030941:29095-29114 | None:intergenic | 50.0% | |
| TGGGTTTAGGAGTGGAAGGG+AGG | + | tig0030941:26366-26385 | Msa1445100:intron | 55.0% | |
| GGGTTTAGGAGTGGAAGGGA+GGG | + | tig0030941:26367-26386 | Msa1445100:intron | 55.0% | |
| GGTTTAGGAGTGGAAGGGAG+GGG | + | tig0030941:26368-26387 | Msa1445100:intron | 55.0% | |
| TTGAGGGTTTAGGCGGGGAA+GGG | - | tig0030941:26565-26584 | None:intergenic | 55.0% | |
| ATTGAGGGTTTAGGCGGGGA+AGG | - | tig0030941:26566-26585 | None:intergenic | 55.0% | |
| ! | CTGGAGCTGCTTTAGGCTAC+TGG | + | tig0030941:26938-26957 | Msa1445100:CDS | 55.0% |
| GAAGATGGCAGTGTGGATGC+CGG | + | tig0030941:26988-27007 | Msa1445100:CDS | 55.0% | |
| AAGATGGCAGTGTGGATGCC+GGG | + | tig0030941:26989-27008 | Msa1445100:CDS | 55.0% | |
| AAATGGGGGATGCGCGTTAC+TGG | + | tig0030941:27027-27046 | Msa1445100:CDS | 55.0% | |
| ! | CGCGTTACTGGAGCTGCTTT+AGG | + | tig0030941:27039-27058 | Msa1445100:CDS | 55.0% |
| CTGGAGCTGCTATAGGCTAC+TGG | + | tig0030941:27820-27839 | Msa1445100:CDS | 55.0% | |
| GAAGATGGCAGTGTGGATGC+CGG | + | tig0030941:26988-27007 | Msa1445100:CDS | 55.0% | |
| AAGATGGCAGTGTGGATGCC+GGG | + | tig0030941:26989-27008 | Msa1445100:CDS | 55.0% | |
| ATGGGCAATGCGCGTTACTG+GGG | + | tig0030941:27911-27930 | Msa1445100:CDS | 55.0% | |
| CGAGAGTTTGGTCGAGACGA+TGG | + | tig0030941:28886-28905 | Msa1445100:three_prime_UTR | 55.0% | |
| GATTGGTGAGGCTTGCGGTT+TGG | - | tig0030941:29090-29109 | None:intergenic | 55.0% | |
| GCGCGCGGGTGAATTTGATG+GGG | + | tig0030941:24931-24950 | Msa1445100:exon | 60.0% | |
| TTAGGAGTGGAAGGGAGGGG+AGG | + | tig0030941:26371-26390 | Msa1445100:intron | 60.0% | |
| TAGGAGTGGAAGGGAGGGGA+GGG | + | tig0030941:26372-26391 | Msa1445100:intron | 60.0% | |
| GGTTTAGGCGGGGAAGGGAA+GGG | - | tig0030941:26560-26579 | None:intergenic | 60.0% | |
| AGATGGCAGTGTGGATGCCG+GGG | + | tig0030941:26990-27009 | Msa1445100:CDS | 60.0% | |
| AGATGGCAGTGTGGATGCCG+GGG | + | tig0030941:26990-27009 | Msa1445100:CDS | 60.0% | |
| GTTTGGTCGAGACGATGGGG+AGG | + | tig0030941:28891-28910 | Msa1445100:three_prime_UTR | 60.0% | |
| AGACGATGGGGAGGCAGGAA+GGG | + | tig0030941:28900-28919 | Msa1445100:three_prime_UTR | 60.0% | |
| TAGGCGGGGAAGGGAAGGGA+GGG | - | tig0030941:26556-26575 | None:intergenic | 65.0% | |
| TTAGGCGGGGAAGGGAAGGG+AGG | - | tig0030941:26557-26576 | None:intergenic | 65.0% | |
| GGGTTTAGGCGGGGAAGGGA+AGG | - | tig0030941:26561-26580 | None:intergenic | 65.0% | |
| GAGACGATGGGGAGGCAGGA+AGG | + | tig0030941:28899-28918 | Msa1445100:three_prime_UTR | 65.0% | |
| GACGATGGGGAGGCAGGAAG+GGG | + | tig0030941:28901-28920 | Msa1445100:three_prime_UTR | 65.0% | |
| GGGGAGGCAGGAAGGGGAAA+TGG | + | tig0030941:28907-28926 | Msa1445100:three_prime_UTR | 65.0% | |
| GGCAGTGTGGATGCCGGGGT+TGG | + | tig0030941:26994-27013 | Msa1445100:CDS | 70.0% | |
| GGTCGAGACGATGGGGAGGC+AGG | + | tig0030941:28895-28914 | Msa1445100:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030941 | gene | 24931 | 29176 | 24931 | ID=Msa1445100;Name=Msa1445100 |
| tig0030941 | mRNA | 24931 | 29176 | 24931 | ID=Msa1445100-mRNA-1;Parent=Msa1445100;Name=Msa1445100-mRNA-1;_AED=0.26;_eAED=0.26;_QI=17|1|1|1|1|1|10|329|450 |
| tig0030941 | exon | 24931 | 25056 | 24931 | ID=Msa1445100-mRNA-1:exon:14809;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 25274 | 25475 | 25274 | ID=Msa1445100-mRNA-1:exon:14810;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 25563 | 25720 | 25563 | ID=Msa1445100-mRNA-1:exon:14811;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 25835 | 25980 | 25835 | ID=Msa1445100-mRNA-1:exon:14812;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 26231 | 26323 | 26231 | ID=Msa1445100-mRNA-1:exon:14813;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 26904 | 27095 | 26904 | ID=Msa1445100-mRNA-1:exon:14814;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 27348 | 27440 | 27348 | ID=Msa1445100-mRNA-1:exon:14815;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 27786 | 27950 | 27786 | ID=Msa1445100-mRNA-1:exon:14816;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 28252 | 28343 | 28252 | ID=Msa1445100-mRNA-1:exon:14817;Parent=Msa1445100-mRNA-1 |
| tig0030941 | exon | 28745 | 29176 | 28745 | ID=Msa1445100-mRNA-1:exon:14818;Parent=Msa1445100-mRNA-1 |
| tig0030941 | five_prime_UTR | 24931 | 24947 | 24931 | ID=Msa1445100-mRNA-1:five_prime_utr;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 24948 | 25056 | 24948 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 25274 | 25475 | 25274 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 25563 | 25720 | 25563 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 25835 | 25980 | 25835 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 26231 | 26323 | 26231 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 26904 | 27095 | 26904 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 27348 | 27440 | 27348 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 27786 | 27950 | 27786 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 28252 | 28343 | 28252 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | CDS | 28745 | 28847 | 28745 | ID=Msa1445100-mRNA-1:cds;Parent=Msa1445100-mRNA-1 |
| tig0030941 | three_prime_UTR | 28848 | 29176 | 28848 | ID=Msa1445100-mRNA-1:three_prime_utr;Parent=Msa1445100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
