AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850960 MtrunA17_Chr6g0454541 80.876 251 20 2 86 308 166 416 6.48e-120 353
Msa0850960 MtrunA17_Chr6g0454541 86.813 91 12 0 1 91 1 91 3.51e-38 141
Msa0850960 MtrunA17_Chr7g0218721 51.556 225 82 5 97 308 177 387 1.63e-60 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850960 AT5G15510.4 55.649 239 87 5 87 308 186 422 3.93e-73 233
Msa0850960 AT5G15510.3 55.649 239 87 5 87 308 186 422 3.93e-73 233
Msa0850960 AT5G15510.1 55.649 239 87 5 87 308 186 422 8.78e-73 233
Msa0850960 AT5G15510.2 55.649 239 87 5 87 308 186 422 8.91e-73 234
Msa0850960 AT3G01015.1 40.050 397 121 12 12 308 33 412 3.39e-67 218

Find 72 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGTTACTTAGTATAAAA+AGG 0.150829 5_4:-40858328 Msa0850960:CDS
GAACTATCTGAAGTTGTTTC+TGG 0.155037 5_4:-40858227 Msa0850960:CDS
TTTCGATTAGAAAACTCATT+AGG 0.285358 5_4:+40858605 None:intergenic
AAACATGGCAACTCAAAATT+AGG 0.291421 5_4:+40856261 None:intergenic
AGTTCATCTTCATCCTTAAC+AGG 0.322831 5_4:+40858245 None:intergenic
GGGTTACAGTTACATCTTCT+TGG 0.323864 5_4:-40858193 Msa0850960:CDS
AGGAATGGTGTACCTGAAAA+TGG 0.330943 5_4:-40858380 Msa0850960:CDS
TCCAAGGGTTTCTTCTTCTC+TGG 0.334067 5_4:+40858644 None:intergenic
AGAGAATGAGAAGAAGAATA+AGG 0.338941 5_4:-40858279 Msa0850960:CDS
TTCGATTAGAAAACTCATTA+GGG 0.343147 5_4:+40858606 None:intergenic
CATGGAAGACCTTGTGCAAT+AGG 0.364761 5_4:+40857422 None:intergenic
CTATGAAGCTTCACATCAAT+AGG 0.379023 5_4:+40856558 None:intergenic
GTGTGTAGCAGGAACTCTTC+TGG 0.394499 5_4:-40858012 Msa0850960:CDS
ATCTGAAGTTGTTTCTGGAT+TGG 0.396998 5_4:-40858222 Msa0850960:CDS
TTGGAATCATCTAGTACTAT+TGG 0.398723 5_4:-40857690 Msa0850960:CDS
AGAACAACAGAAAAGGGAAT+TGG 0.400583 5_4:-40856390 Msa0850960:CDS
GGTTACAGTTACATCTTCTT+GGG 0.415618 5_4:-40858192 Msa0850960:CDS
TCTTCTTGGGATTGTGGAAG+TGG 0.435767 5_4:-40858179 Msa0850960:CDS
GGTGATGAAACAACCTGTTA+AGG 0.440822 5_4:-40858258 Msa0850960:CDS
TCGCGCGGAATTTGATCATC+AGG 0.446879 5_4:-40856517 Msa0850960:intron
ACCTCAGTCCTTAGCTTGAA+AGG 0.454283 5_4:+40857618 None:intergenic
TTCCTCTTCAGCCAACTGTA+AGG 0.456183 5_4:+40856203 None:intergenic
GGGATTGTGGAAGTGGAAGA+AGG 0.460575 5_4:-40858172 Msa0850960:intron
GGAATTGGAAATACAACAAA+AGG 0.463028 5_4:-40856375 Msa0850960:CDS
AATTCGTCAGAGAAAGTTTG+TGG 0.463296 5_4:-40858510 Msa0850960:CDS
GGTATATATTCCCTTACAGT+TGG 0.463851 5_4:-40856214 Msa0850960:three_prime_UTR
TTGTTTCTGGATTGGATCAA+AGG 0.473482 5_4:-40858214 Msa0850960:CDS
TTTGATAGAACAACAGAAAA+GGG 0.474688 5_4:-40856396 Msa0850960:CDS
CCATGGACTATTGATGAACC+TGG 0.478943 5_4:-40857404 Msa0850960:CDS
GTTTGATAGAACAACAGAAA+AGG 0.481566 5_4:-40856397 Msa0850960:CDS
CTGATTTGAGATGTGAAAGT+TGG 0.482365 5_4:+40856289 None:intergenic
TCCCTTACAGTTGGCTGAAG+AGG 0.485828 5_4:-40856205 Msa0850960:three_prime_UTR
GAAAGAGAAGAATGAGGATG+AGG 0.486091 5_4:-40858303 Msa0850960:CDS
GTTACATCTTCTTGGGATTG+TGG 0.489323 5_4:-40858185 Msa0850960:CDS
TTGATTTGAGATGTGAAAGT+TGG 0.494686 5_4:+40856341 None:intergenic
GAAGCTTCATAGTGATTTGA+GGG 0.498697 5_4:-40856547 Msa0850960:CDS
GTTCAAATTCTCAATTTCCA+AGG 0.500670 5_4:+40858628 None:intergenic
GTACTATTGGAGGAAGGAGG+TGG 0.500694 5_4:-40857677 Msa0850960:CDS
TGTTTCTGGATTGGATCAAA+GGG 0.501809 5_4:-40858213 Msa0850960:CDS
AGAAGAACAGTTGATGAAGA+AGG 0.503039 5_4:-40857483 Msa0850960:CDS
TGAAGCTTCATAGTGATTTG+AGG 0.503817 5_4:-40856548 Msa0850960:CDS
TTCAAATTCTCAATTTCCAA+GGG 0.511479 5_4:+40858629 None:intergenic
AAATGGTAAAGTAATGCATT+TGG 0.516438 5_4:-40858363 Msa0850960:CDS
CTCTGACGAATTCTCTTCTG+CGG 0.520745 5_4:+40858521 None:intergenic
CTATTGCACAAGGTCTTCCA+TGG 0.526302 5_4:-40857421 Msa0850960:CDS
GTCAGAAACCTTTCAAGCTA+AGG 0.529285 5_4:-40857626 Msa0850960:CDS
TAAAGTAATGCATTTGGTGA+AGG 0.534433 5_4:-40858357 Msa0850960:CDS
TGATCAAAGTCCTAAGAAAA+CGG 0.535593 5_4:-40858468 Msa0850960:CDS
TTATTCGATGATTTCTGAAG+TGG 0.555085 5_4:+40858581 None:intergenic
ACCAGAGAAGAAGAAACCCT+TGG 0.560006 5_4:-40858645 Msa0850960:CDS
TATTCGATGATTTCTGAAGT+GGG 0.560596 5_4:+40858582 None:intergenic
CCAGGTTCATCAATAGTCCA+TGG 0.560825 5_4:+40857404 None:intergenic
TTTATCTAAAATGTTGACGT+TGG 0.565038 5_4:-40856235 Msa0850960:three_prime_UTR
TTTGTGCTTTCTTTCACAGG+AGG 0.566913 5_4:+40856582 None:intergenic
GAATCATCTAGTACTATTGG+AGG 0.568710 5_4:-40857687 Msa0850960:CDS
TAAGTGTGTTTGCGAAGCAA+TGG 0.571703 5_4:-40858411 Msa0850960:CDS
TCCTCTTCAGCCAACTGTAA+GGG 0.573549 5_4:+40856204 None:intergenic
AAGGGAGAAAGAGAAGAATG+AGG 0.575728 5_4:-40858309 Msa0850960:CDS
CATGGACTATTGATGAACCT+GGG 0.583088 5_4:-40857403 Msa0850960:CDS
GATGTGAAAGTTGGAAAACA+TGG 0.609865 5_4:+40856298 None:intergenic
CATCTAGTACTATTGGAGGA+AGG 0.619078 5_4:-40857683 Msa0850960:CDS
AAATGTGGAGAGAATAGTGA+TGG 0.619254 5_4:-40858437 Msa0850960:CDS
GCAATGGAAGAAACAAGGAA+TGG 0.646394 5_4:-40858395 Msa0850960:CDS
GCGAAGCAATGGAAGAAACA+AGG 0.647299 5_4:-40858400 Msa0850960:CDS
CTAGTACTATTGGAGGAAGG+AGG 0.649542 5_4:-40857680 Msa0850960:CDS
TTTGAGGGCAATTGATCGCG+CGG 0.653049 5_4:-40856532 Msa0850960:CDS
ATGGACTATTGATGAACCTG+GGG 0.661937 5_4:-40857402 Msa0850960:intron
GATGTGAAAGTTGGTAAACA+TGG 0.662802 5_4:+40856350 None:intergenic
TGTAGCAGGAACTCTTCTGG+TGG 0.669446 5_4:-40858009 Msa0850960:CDS
ACCTTTCAAGCTAAGGACTG+AGG 0.672965 5_4:-40857619 Msa0850960:intron
ATGAGAGTACCTATTGCACA+AGG 0.699289 5_4:-40857431 Msa0850960:CDS
ATAATGCTATTGTAGCAAAG+GGG 0.728973 5_4:-40857515 Msa0850960:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATTACATTTATACT+TGG + chr5_4:40857561-40857580 None:intergenic 10.0%
!!! TAATTGATGATACAAATAAT+TGG - chr5_4:40857253-40857272 Msa0850960:intron 15.0%
!! AGTTTAAAAATTCTTTACAT+TGG - chr5_4:40857818-40857837 Msa0850960:intron 15.0%
!!! TCATTTTTGCAAAATGTTAT+CGG - chr5_4:40857012-40857031 Msa0850960:intron 20.0%
!! ACTATAATACTAATGAAGAT+TGG - chr5_4:40857073-40857092 Msa0850960:intron 20.0%
!!! GTAATTTTTTAATCAAGCAT+AGG - chr5_4:40857570-40857589 Msa0850960:intron 20.0%
!! AAAACTTTCTGTTTATTTGA+TGG - chr5_4:40857780-40857799 Msa0850960:intron 20.0%
!! TTAAAAATTCTTTACATTGG+CGG - chr5_4:40857821-40857840 Msa0850960:intron 20.0%
!! CAAATTTATCATAATTCTGT+TGG - chr5_4:40858186-40858205 Msa0850960:CDS 20.0%
!!! ATTTTAGATAAAGGAAAACA+TGG + chr5_4:40858606-40858625 None:intergenic 20.0%
! TTCAAATTCTCAATTTCCAA+GGG + chr5_4:40856223-40856242 None:intergenic 25.0%
! TTCGATTAGAAAACTCATTA+GGG + chr5_4:40856246-40856265 None:intergenic 25.0%
! TTTCGATTAGAAAACTCATT+AGG + chr5_4:40856247-40856266 None:intergenic 25.0%
! AAATGGTAAAGTAATGCATT+TGG - chr5_4:40856486-40856505 Msa0850960:intron 25.0%
! AGAGGTTACTTAGTATAAAA+AGG - chr5_4:40856521-40856540 Msa0850960:CDS 25.0%
! GAGGTTACTTAGTATAAAAA+GGG - chr5_4:40856522-40856541 Msa0850960:CDS 25.0%
! TTAGCGATTCACTATTAATA+AGG - chr5_4:40857096-40857115 Msa0850960:intron 25.0%
!!! AGTTTCTTCAAATTTTTCAG+TGG - chr5_4:40857289-40857308 Msa0850960:intron 25.0%
!!! AAATTTTTCAGTGGCTATAT+TGG - chr5_4:40857298-40857317 Msa0850960:intron 25.0%
! TATAATGCTATTGTAGCAAA+GGG - chr5_4:40857333-40857352 Msa0850960:intron 25.0%
! ATGCTAGGATATTAGATATA+AGG + chr5_4:40857926-40857945 None:intergenic 25.0%
! ATAGCAATTCTCAATTAGAA+CGG - chr5_4:40857960-40857979 Msa0850960:intron 25.0%
! TCATGATGTGTAAAACTAAA+GGG + chr5_4:40858384-40858403 None:intergenic 25.0%
! TTCATGATGTGTAAAACTAA+AGG + chr5_4:40858385-40858404 None:intergenic 25.0%
! TTTGATAGAACAACAGAAAA+GGG - chr5_4:40858453-40858472 Msa0850960:CDS 25.0%
!! AACGTCAACATTTTAGATAA+AGG + chr5_4:40858615-40858634 None:intergenic 25.0%
!! TTTATCTAAAATGTTGACGT+TGG - chr5_4:40858614-40858633 Msa0850960:CDS 25.0%
GTTCAAATTCTCAATTTCCA+AGG + chr5_4:40856224-40856243 None:intergenic 30.0%
!! TATTCGATGATTTCTGAAGT+GGG + chr5_4:40856270-40856289 None:intergenic 30.0%
! TTATTCGATGATTTCTGAAG+TGG + chr5_4:40856271-40856290 None:intergenic 30.0%
TGATCAAAGTCCTAAGAAAA+CGG - chr5_4:40856381-40856400 Msa0850960:CDS 30.0%
! TTACACAAAACCGTTTTCTT+AGG + chr5_4:40856394-40856413 None:intergenic 30.0%
!! AAAACGGTTTTGTGTAAATG+TGG - chr5_4:40856397-40856416 Msa0850960:CDS 30.0%
! TGCATTACTTTACCATTTTC+AGG + chr5_4:40856484-40856503 None:intergenic 30.0%
! TAAAGTAATGCATTTGGTGA+AGG - chr5_4:40856492-40856511 Msa0850960:intron 30.0%
AGAGAATGAGAAGAAGAATA+AGG - chr5_4:40856570-40856589 Msa0850960:CDS 30.0%
ACATGTGATGTAATGAACAT+TGG - chr5_4:40856983-40857002 Msa0850960:intron 30.0%
!!! TTTCTGTGTTTTTTAGAGCT+TGG - chr5_4:40857140-40857159 Msa0850960:intron 30.0%
TTGGAATCATCTAGTACTAT+TGG - chr5_4:40857159-40857178 Msa0850960:intron 30.0%
CTATAATGCTATTGTAGCAA+AGG - chr5_4:40857332-40857351 Msa0850960:intron 30.0%
ATAATGCTATTGTAGCAAAG+GGG - chr5_4:40857334-40857353 Msa0850960:intron 30.0%
AGCATATACACTTCAAACTA+AGG + chr5_4:40857496-40857515 None:intergenic 30.0%
TAACAACTCACAGTCAAATT+TGG - chr5_4:40857519-40857538 Msa0850960:intron 30.0%
TCGTAATTGCATTACATGAT+GGG + chr5_4:40857639-40857658 None:intergenic 30.0%
ATCGTAATTGCATTACATGA+TGG + chr5_4:40857640-40857659 None:intergenic 30.0%
TTACGATTATAGCTTATGTC+TGG - chr5_4:40857653-40857672 Msa0850960:CDS 30.0%
! TTTAAATTTTCACGCACTGT+CGG - chr5_4:40857684-40857703 Msa0850960:CDS 30.0%
GAATTAAATCTGTGAGTAGT+TGG - chr5_4:40857851-40857870 Msa0850960:intron 30.0%
TCTAATATCCTAGCATAACA+TGG - chr5_4:40857930-40857949 Msa0850960:intron 30.0%
TGTACTAAATTCAGTTTCAG+TGG - chr5_4:40858094-40858113 Msa0850960:intron 30.0%
AATTCAGTTTCAGTGGAATT+AGG - chr5_4:40858101-40858120 Msa0850960:intron 30.0%
CATGATGTGTAAAACTAAAG+GGG + chr5_4:40858383-40858402 None:intergenic 30.0%
GTTTGATAGAACAACAGAAA+AGG - chr5_4:40858452-40858471 Msa0850960:CDS 30.0%
GGAATTGGAAATACAACAAA+AGG - chr5_4:40858474-40858493 Msa0850960:CDS 30.0%
! TTGATTTGAGATGTGAAAGT+TGG + chr5_4:40858511-40858530 None:intergenic 30.0%
AAACATGGCAACTCAAAATT+AGG + chr5_4:40858591-40858610 None:intergenic 30.0%
AATTCGTCAGAGAAAGTTTG+TGG - chr5_4:40856339-40856358 Msa0850960:CDS 35.0%
AAATGTGGAGAGAATAGTGA+TGG - chr5_4:40856412-40856431 Msa0850960:CDS 35.0%
!! ATTTGGTGAAGGATTTTGAG+AGG - chr5_4:40856503-40856522 Msa0850960:intron 35.0%
AGTTCATCTTCATCCTTAAC+AGG + chr5_4:40856607-40856626 None:intergenic 35.0%
! GAACTATCTGAAGTTGTTTC+TGG - chr5_4:40856622-40856641 Msa0850960:intron 35.0%
!! ATCTGAAGTTGTTTCTGGAT+TGG - chr5_4:40856627-40856646 Msa0850960:intron 35.0%
!! TTGTTTCTGGATTGGATCAA+AGG - chr5_4:40856635-40856654 Msa0850960:intron 35.0%
!! TGTTTCTGGATTGGATCAAA+GGG - chr5_4:40856636-40856655 Msa0850960:intron 35.0%
GGTTACAGTTACATCTTCTT+GGG - chr5_4:40856657-40856676 Msa0850960:intron 35.0%
! CATGCCTTATTCACAAATGT+CGG + chr5_4:40856945-40856964 None:intergenic 35.0%
ATTTGTGAATAAGGCATGTC+CGG - chr5_4:40856947-40856966 Msa0850960:intron 35.0%
GAATCATCTAGTACTATTGG+AGG - chr5_4:40857162-40857181 Msa0850960:intron 35.0%
!! AGAAGAACAGTTGATGAAGA+AGG - chr5_4:40857366-40857385 Msa0850960:intron 35.0%
! TTAAATTTTCACGCACTGTC+GGG - chr5_4:40857685-40857704 Msa0850960:CDS 35.0%
TCAATTAGAACGGTACATTG+TGG - chr5_4:40857970-40857989 Msa0850960:intron 35.0%
TAACGCAGCAACATCATTAA+GGG + chr5_4:40858027-40858046 None:intergenic 35.0%
TTAACGCAGCAACATCATTA+AGG + chr5_4:40858028-40858047 None:intergenic 35.0%
AGACTCAAGAGGATGTTTAT+TGG + chr5_4:40858054-40858073 None:intergenic 35.0%
AGTACATATCAGCTGACATA+TGG + chr5_4:40858080-40858099 None:intergenic 35.0%
!! ATGAGGTATTGTGAGCAAAA+AGG + chr5_4:40858130-40858149 None:intergenic 35.0%
! ACAAACACAGAAAGTACATG+AGG + chr5_4:40858147-40858166 None:intergenic 35.0%
CAGAAGAATGCTTAGACAAA+TGG + chr5_4:40858229-40858248 None:intergenic 35.0%
CTATGAAGCTTCACATCAAT+AGG + chr5_4:40858294-40858313 None:intergenic 35.0%
TGAAGCTTCATAGTGATTTG+AGG - chr5_4:40858301-40858320 Msa0850960:CDS 35.0%
GAAGCTTCATAGTGATTTGA+GGG - chr5_4:40858302-40858321 Msa0850960:CDS 35.0%
TGATGAATGCTTAACTGTGT+AGG - chr5_4:40858414-40858433 Msa0850960:CDS 35.0%
AGAACAACAGAAAAGGGAAT+TGG - chr5_4:40858459-40858478 Msa0850960:CDS 35.0%
!! GATGTGAAAGTTGGTAAACA+TGG + chr5_4:40858502-40858521 None:intergenic 35.0%
GATGTGAAAGTTGGAAAACA+TGG + chr5_4:40858554-40858573 None:intergenic 35.0%
! CTGATTTGAGATGTGAAAGT+TGG + chr5_4:40858563-40858582 None:intergenic 35.0%
GGTATATATTCCCTTACAGT+TGG - chr5_4:40858635-40858654 Msa0850960:CDS 35.0%
TAAGTGTGTTTGCGAAGCAA+TGG - chr5_4:40856438-40856457 Msa0850960:intron 40.0%
GCAATGGAAGAAACAAGGAA+TGG - chr5_4:40856454-40856473 Msa0850960:intron 40.0%
AGGAATGGTGTACCTGAAAA+TGG - chr5_4:40856469-40856488 Msa0850960:intron 40.0%
AAGGGAGAAAGAGAAGAATG+AGG - chr5_4:40856540-40856559 Msa0850960:CDS 40.0%
GAAAGAGAAGAATGAGGATG+AGG - chr5_4:40856546-40856565 Msa0850960:CDS 40.0%
GGTGATGAAACAACCTGTTA+AGG - chr5_4:40856591-40856610 Msa0850960:CDS 40.0%
GGGTTACAGTTACATCTTCT+TGG - chr5_4:40856656-40856675 Msa0850960:intron 40.0%
GTTACATCTTCTTGGGATTG+TGG - chr5_4:40856664-40856683 Msa0850960:intron 40.0%
CTTGTGTCAATTGTTGTGTG+TGG - chr5_4:40856792-40856811 Msa0850960:intron 40.0%
CCTTATTCACAAATGTCGGT+CGG + chr5_4:40856941-40856960 None:intergenic 40.0%
TTACATCACATGTGTCGTGT+TGG + chr5_4:40856976-40856995 None:intergenic 40.0%
GTGTTAGTGTTTGTGACATG+CGG - chr5_4:40857048-40857067 Msa0850960:intron 40.0%
CATCTAGTACTATTGGAGGA+AGG - chr5_4:40857166-40857185 Msa0850960:intron 40.0%
GTCAGAAACCTTTCAAGCTA+AGG - chr5_4:40857223-40857242 Msa0850960:intron 40.0%
!! ATGAGAGTACCTATTGCACA+AGG - chr5_4:40857418-40857437 Msa0850960:CDS 40.0%
! CATGGACTATTGATGAACCT+GGG - chr5_4:40857446-40857465 Msa0850960:CDS 40.0%
! ATGGACTATTGATGAACCTG+GGG - chr5_4:40857447-40857466 Msa0850960:CDS 40.0%
! GCTAATGGACAAGCATTAGT+AGG + chr5_4:40857606-40857625 None:intergenic 40.0%
CGATTATAGCTTATGTCTGG+TGG - chr5_4:40857656-40857675 Msa0850960:CDS 40.0%
! TAAATTTTCACGCACTGTCG+GGG - chr5_4:40857686-40857705 Msa0850960:CDS 40.0%
TATCCTAGCATAACATGGCA+AGG - chr5_4:40857935-40857954 Msa0850960:intron 40.0%
ACATATGGTCAAGACTCAAG+AGG + chr5_4:40858065-40858084 None:intergenic 40.0%
TTTGTGCTTTCTTTCACAGG+AGG + chr5_4:40858270-40858289 None:intergenic 40.0%
!! GGTTTTGTGCTTTCTTTCAC+AGG + chr5_4:40858273-40858292 None:intergenic 40.0%
TGAATGCTTAACTGTGTAGG+TGG - chr5_4:40858417-40858436 Msa0850960:CDS 40.0%
ACCAGAGAAGAAGAAACCCT+TGG - chr5_4:40856204-40856223 Msa0850960:three_prime_UTR 45.0%
TCCAAGGGTTTCTTCTTCTC+TGG + chr5_4:40856208-40856227 None:intergenic 45.0%
CTCTGACGAATTCTCTTCTG+CGG + chr5_4:40856331-40856350 None:intergenic 45.0%
GCGAAGCAATGGAAGAAACA+AGG - chr5_4:40856449-40856468 Msa0850960:intron 45.0%
TCTTCTTGGGATTGTGGAAG+TGG - chr5_4:40856670-40856689 Msa0850960:intron 45.0%
! TTTTGTGCAGTGTGTGTAGC+AGG - chr5_4:40856826-40856845 Msa0850960:intron 45.0%
CCGACCGACATTTGTGAATA+AGG - chr5_4:40856938-40856957 Msa0850960:intron 45.0%
CTAGTACTATTGGAGGAAGG+AGG - chr5_4:40857169-40857188 Msa0850960:intron 45.0%
ACCTTTCAAGCTAAGGACTG+AGG - chr5_4:40857230-40857249 Msa0850960:intron 45.0%
! ACCTCAGTCCTTAGCTTGAA+AGG + chr5_4:40857234-40857253 None:intergenic 45.0%
!! TGGCTATATTGGTGATGCAC+TGG - chr5_4:40857309-40857328 Msa0850960:intron 45.0%
CATGGAAGACCTTGTGCAAT+AGG + chr5_4:40857430-40857449 None:intergenic 45.0%
CTATTGCACAAGGTCTTCCA+TGG - chr5_4:40857428-40857447 Msa0850960:CDS 45.0%
CCAGGTTCATCAATAGTCCA+TGG + chr5_4:40857448-40857467 None:intergenic 45.0%
! CCATGGACTATTGATGAACC+TGG - chr5_4:40857445-40857464 Msa0850960:CDS 45.0%
CTATTGATGAACCTGGGGTA+AGG - chr5_4:40857452-40857471 Msa0850960:CDS 45.0%
! TTACATGATGGGACAGTCAG+AGG + chr5_4:40857628-40857647 None:intergenic 45.0%
TCTCCTTGCCATGTTATGCT+AGG + chr5_4:40857941-40857960 None:intergenic 45.0%
TCCTCTTCAGCCAACTGTAA+GGG + chr5_4:40858648-40858667 None:intergenic 45.0%
TTCCTCTTCAGCCAACTGTA+AGG + chr5_4:40858649-40858668 None:intergenic 45.0%
GGGATTGTGGAAGTGGAAGA+AGG - chr5_4:40856677-40856696 Msa0850960:intron 50.0%
GTGTGTAGCAGGAACTCTTC+TGG - chr5_4:40856837-40856856 Msa0850960:intron 50.0%
TGTAGCAGGAACTCTTCTGG+TGG - chr5_4:40856840-40856859 Msa0850960:intron 50.0%
ACATGTGTCGTGTTGGACAC+CGG + chr5_4:40856969-40856988 None:intergenic 50.0%
GTACTATTGGAGGAAGGAGG+TGG - chr5_4:40857172-40857191 Msa0850960:intron 50.0%
TGAGAAATCGACCTTACCCC+AGG + chr5_4:40857466-40857485 None:intergenic 50.0%
ATGGGACAGTCAGAGGCTAA+TGG + chr5_4:40857621-40857640 None:intergenic 50.0%
TTTGAGGGCAATTGATCGCG+CGG - chr5_4:40858317-40858336 Msa0850960:CDS 50.0%
TCGCGCGGAATTTGATCATC+AGG - chr5_4:40858332-40858351 Msa0850960:CDS 50.0%
TCCCTTACAGTTGGCTGAAG+AGG - chr5_4:40858644-40858663 Msa0850960:CDS 50.0%
GTCGGTCGGTACTATAGAGC+TGG + chr5_4:40856927-40856946 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 40856199 40858672 40856199 ID=Msa0850960;Name=Msa0850960
chr5_4 mRNA 40856199 40858672 40856199 ID=Msa0850960-mRNA-1;Parent=Msa0850960;Name=Msa0850960-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|1|0.66|1|1|1|6|132|321
chr5_4 exon 40856199 40856435 40856199 ID=Msa0850960-mRNA-1:exon:12886;Parent=Msa0850960-mRNA-1
chr5_4 exon 40856518 40856616 40856518 ID=Msa0850960-mRNA-1:exon:12885;Parent=Msa0850960-mRNA-1
chr5_4 exon 40857403 40857522 40857403 ID=Msa0850960-mRNA-1:exon:12884;Parent=Msa0850960-mRNA-1
chr5_4 exon 40857620 40857715 40857620 ID=Msa0850960-mRNA-1:exon:12883;Parent=Msa0850960-mRNA-1
chr5_4 exon 40857990 40858035 40857990 ID=Msa0850960-mRNA-1:exon:12882;Parent=Msa0850960-mRNA-1
chr5_4 exon 40858173 40858672 40858173 ID=Msa0850960-mRNA-1:exon:12881;Parent=Msa0850960-mRNA-1
chr5_4 CDS 40858173 40858672 40858173 ID=Msa0850960-mRNA-1:cds;Parent=Msa0850960-mRNA-1
chr5_4 CDS 40857990 40858035 40857990 ID=Msa0850960-mRNA-1:cds;Parent=Msa0850960-mRNA-1
chr5_4 CDS 40857620 40857715 40857620 ID=Msa0850960-mRNA-1:cds;Parent=Msa0850960-mRNA-1
chr5_4 CDS 40857403 40857522 40857403 ID=Msa0850960-mRNA-1:cds;Parent=Msa0850960-mRNA-1
chr5_4 CDS 40856518 40856616 40856518 ID=Msa0850960-mRNA-1:cds;Parent=Msa0850960-mRNA-1
chr5_4 CDS 40856331 40856435 40856331 ID=Msa0850960-mRNA-1:cds;Parent=Msa0850960-mRNA-1
chr5_4 three_prime_UTR 40856199 40856330 40856199 ID=Msa0850960-mRNA-1:three_prime_utr;Parent=Msa0850960-mRNA-1
Gene Sequence

>Msa0850960

ATGACACCAGAGAAGAAGAAACCCTTGGAAATTGAGAATTTGAACCCTAATGAGTTTTCTAATCGAAACCCACTTCAGAAATCATCGAATAAAGCTAAGAATAATTGTGTTAATGTTTCTGTTGTTTCGCCGCAGAAGAGAATTCGTCAGAGAAAGTTTGTGGTTGCAAAGAAGAAGAAGAATGATCAAAGTCCTAAGAAAACGGTTTTGTGTAAATGTGGAGAGAATAGTGATGGAAGTAAGTGTGTTTGCGAAGCAATGGAAGAAACAAGGAATGGTGTACCTGAAAATGGTAAAGTAATGCATTTGGTGAAGGATTTTGAGAGGTTACTTAGTATAAAAAGGGAGAAAGAGAAGAATGAGGATGAGGAAGAGAATGAGAAGAAGAATAAGGTGATGAAACAACCTGTTAAGGATGAAGATGAACTATCTGAAGTTGTTTCTGGATTGGATCAAAGGGTTACAGTTACATCTTCTTGGGATTGTGGAAGTGGAAGAAGTGTGTGTAGCAGGAACTCTTCTGGTGGTAGAAGAAGCAGAAGAAATAGCTTGGAATCATCTAGTACTATTGGAGGAAGGAGGTGGAAGAAGAAGCAGAAGCTAAAAGTCACTAGTCAGAAACCTTTCAAGCTAAGGACTGAGCAAAGGGGAAAGATGAAAGAAGAACAGTTGATGAAGAAGGTAAAAGAGATTTTGACAGAAGAAGAAAAGATGAGAGTACCTATTGCACAAGGTCTTCCATGGACTATTGATGAACCTGGGTGCTTGCTAAAACCTCCTGTGAAAGAAAGCACAAAACCTATTGATGTGAAGCTTCATAGTGATTTGAGGGCAATTGATCGCGCGGAATTTGATCATCAGGTGGCTGAAAAATTGAGTTTGATAGAACAACAGAAAAGGGAATTGGAAATACAACAAAAGGTACCATGTTTACCAACTTTCACATCTCAAATCAACAAGTTCTGA

Protein sequence

>Msa0850960

MTPEKKKPLEIENLNPNEFSNRNPLQKSSNKAKNNCVNVSVVSPQKRIRQRKFVVAKKKKNDQSPKKTVLCKCGENSDGSKCVCEAMEETRNGVPENGKVMHLVKDFERLLSIKREKEKNEDEEENEKKNKVMKQPVKDEDELSEVVSGLDQRVTVTSSWDCGSGRSVCSRNSSGGRRSRRNSLESSSTIGGRRWKKKQKLKVTSQKPFKLRTEQRGKMKEEQLMKKVKEILTEEEKMRVPIAQGLPWTIDEPGCLLKPPVKESTKPIDVKLHSDLRAIDRAEFDHQVAEKLSLIEQQKRELEIQQKVPCLPTFTSQINKF*