AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336640 MtrunA17_Chr5g0405961 97.126 522 15 0 1 522 1 522 0.0 1031
Msa1336640 MtrunA17_Chr8g0371401 43.827 486 202 20 23 483 15 454 2.48e-87 276
Msa1336640 MtrunA17_Chr1g0157011 34.674 522 255 23 15 473 27 525 6.56e-59 204
Msa1336640 MtrunA17_Chr3g0143261 32.637 383 214 11 80 439 88 449 2.52e-43 160
Msa1336640 MtrunA17_Chr3g0143171 40.299 201 101 6 250 439 149 341 1.25e-36 140
Msa1336640 MtrunA17_Chr5g0440821 30.588 425 220 17 63 440 2 398 1.83e-24 107
Msa1336640 MtrunA17_Chr4g0045341 42.683 82 43 2 353 430 96 177 7.10e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336640 AT4G35890.1 31.238 509 232 20 23 477 44 488 9.75e-57 198
Msa1336640 AT5G66100.1 34.532 417 206 14 49 439 43 418 1.90e-46 168
Msa1336640 AT4G35890.2 30.626 431 185 18 23 400 44 413 1.45e-37 143
Msa1336640 AT5G21160.1 34.637 179 93 6 268 437 196 359 6.39e-22 100
Msa1336640 AT5G21160.2 34.637 179 93 6 268 437 196 359 6.43e-22 100
Msa1336640 AT5G21160.3 34.637 179 93 6 268 437 196 359 6.43e-22 100
Msa1336640 AT5G66100.2 31.792 346 169 14 49 368 43 347 3.77e-16 80.5

Find 224 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCAGCAATTAGCGTTAT+TGG 0.145365 tig0001300:+56101 None:intergenic
TGTTGTGTTTGATTGGTTTC+TGG 0.151759 tig0001300:+56951 None:intergenic
TAAATTCTCGTGAGACATTT+AGG 0.221762 tig0001300:-53789 Msa1336640:three_prime_UTR
TTGAATTTGCGGAGGAATTT+TGG 0.243349 tig0001300:-53559 Msa1336640:three_prime_UTR
TTTATTATCCTCTCATCTAT+TGG 0.245766 tig0001300:-53040 None:intergenic
ACTTCTCTGTGTGTGGTCTC+TGG 0.268404 tig0001300:+56778 None:intergenic
CCAGCGTGCACAATTGTTTC+GGG 0.270137 tig0001300:+53198 Msa1336630:intron
AGTGTCCTCCTTAACTCTTA+TGG 0.283858 tig0001300:+53860 None:intergenic
TATATTCTTGCGGAAGAATA+TGG 0.284764 tig0001300:-56141 Msa1336640:CDS
TGGAGACTGTGCATGGTCTC+TGG 0.286951 tig0001300:+56820 None:intergenic
CCCAGCGTGCACAATTGTTT+CGG 0.298943 tig0001300:+53197 Msa1336630:intron
CCACCACCATTGCGGCCTTT+TGG 0.303201 tig0001300:-56524 Msa1336640:CDS
ACTATCCATGCAACTTCTTC+AGG 0.315616 tig0001300:+53155 Msa1336630:intron
TCTCACCACCATCATAACTA+TGG 0.319138 tig0001300:-56674 Msa1336640:CDS
GAGAGAAAATGTGGTAGATT+AGG 0.325107 tig0001300:+58404 None:intergenic
GTGTCCTCCTTAACTCTTAT+GGG 0.328420 tig0001300:+53861 None:intergenic
ATGTATGTTCTTAGCCTTAG+AGG 0.329117 tig0001300:-53596 Msa1336640:three_prime_UTR
AGTTCAAATGCATCTTCTAA+TGG 0.332097 tig0001300:-56929 Msa1336640:CDS
GGATAACATGATTGTTGAAT+AGG 0.337435 tig0001300:-53768 Msa1336640:three_prime_UTR
GTTCAAATGCATCTTCTAAT+GGG 0.338948 tig0001300:-56928 Msa1336640:CDS
TATTATAGGGAGACAAAATA+AGG 0.339170 tig0001300:-54211 Msa1336640:intron
AGAGATGGCCTTATAATTCT+TGG 0.343973 tig0001300:+56575 None:intergenic
TCGTCGAAGGGTTTGTTAGA+TGG 0.345103 tig0001300:-57914 Msa1336640:CDS
TTCCGGCAATGGCGGTGTTT+CGG 0.345302 tig0001300:-58011 Msa1336640:CDS
TTTGAACTGTTGTGTTTGAT+TGG 0.345506 tig0001300:+56944 None:intergenic
TCAGAGCATACACCTGCATT+TGG 0.346720 tig0001300:-54020 Msa1336640:CDS
AGGTTATCGGAGGAATGATT+AGG 0.351964 tig0001300:+58247 None:intergenic
TGAATGAATGGTGCAGAATT+AGG 0.352393 tig0001300:+56548 None:intergenic
GGTTATCGGAGGAATGATTA+GGG 0.354115 tig0001300:+58248 None:intergenic
GCGTTATTGGAACCCAGCCC+TGG 0.355999 tig0001300:+56114 None:intergenic
CAGAGCATACACCTGCATTT+GGG 0.357232 tig0001300:-54019 Msa1336640:CDS
GAGTTTCTCCAAGAATTATA+AGG 0.357825 tig0001300:-56583 Msa1336640:CDS
ATCGATAACAACGAATGATT+AGG 0.359163 tig0001300:+58292 None:intergenic
GGCAAAATGATTGGGAGAAA+TGG 0.361134 tig0001300:-54187 Msa1336640:CDS
GGAGACTGTGTGTGGTCTCT+TGG 0.365799 tig0001300:+56800 None:intergenic
TAATGTAAATGTAAACAATA+TGG 0.368486 tig0001300:-56984 Msa1336640:CDS
ACTTCAGGACTTGTAACATT+AGG 0.371270 tig0001300:+54140 None:intergenic
TTCTGAGGGAAGAGGAAATA+TGG 0.374842 tig0001300:-53406 Msa1336640:three_prime_UTR
CTCCGAAACACCGCCATTGC+CGG 0.378440 tig0001300:+58009 None:intergenic
CTTCTCTGTGTGTGGTCTCT+GGG 0.386745 tig0001300:+56779 None:intergenic
CGCTCGAGGTTCTACGAAAT+CGG 0.386828 tig0001300:-57939 Msa1336640:CDS
CCGATGCAGCTATCGAAACT+TGG 0.392131 tig0001300:+56882 None:intergenic
ACTGGTCAAGTTGACATTCA+TGG 0.392401 tig0001300:-53957 Msa1336640:CDS
ATCTTCTGTTTCTCCATGGC+AGG 0.393819 tig0001300:-57891 Msa1336640:intron
CTTGTGGCTGAGCTTGTCCT+AGG 0.396667 tig0001300:-53379 Msa1336640:three_prime_UTR
CCAATGCCTCTTTATTATGC+AGG 0.404105 tig0001300:-56332 Msa1336640:CDS
TCGATAACAACGAATGATTA+GGG 0.404797 tig0001300:+58293 None:intergenic
CGTTCCCGCCGTTTCTTCAT+CGG 0.405276 tig0001300:-58161 Msa1336640:CDS
GCAAGCAAAACCATCCTCTA+AGG 0.405848 tig0001300:+53582 None:intergenic
TTGGGAGCCCATAAGAGTTA+AGG 0.411669 tig0001300:-53868 Msa1336640:three_prime_UTR
AAATAAGGAGGCAAAATGAT+TGG 0.412088 tig0001300:-54196 Msa1336640:CDS
AGAGAAAATGTGGTAGATTA+GGG 0.414321 tig0001300:+58405 None:intergenic
TTGCTATGCAACTGAGGGTC+TGG 0.415544 tig0001300:+56308 None:intergenic
GAAAGATTGCAACAACGCTT+TGG 0.421033 tig0001300:+58551 None:intergenic
GTAAGAGACCTGCTTGGAAT+AGG 0.423840 tig0001300:-58036 Msa1336640:CDS
ATGTCCTGATTTAACACTTC+AGG 0.425026 tig0001300:+54125 None:intergenic
ACCTAAAATAGTAGTCAATC+TGG 0.425590 tig0001300:+56276 None:intergenic
GAATTATCTGATAGAACAAC+TGG 0.426069 tig0001300:+54041 None:intergenic
CCTGCTTGGAATAGGTCTTC+CGG 0.429708 tig0001300:-58028 Msa1336640:CDS
CGCTGCTGTGGATGATCACT+TGG 0.431392 tig0001300:+56746 None:intergenic
CTCTCAACTAGTGAAATTAC+TGG 0.436685 tig0001300:-53975 Msa1336640:CDS
ATAATTCTTGGAGAAACTCT+TGG 0.437390 tig0001300:+56587 None:intergenic
GTTCCAATAACGCTAATTGC+TGG 0.437458 tig0001300:-56104 Msa1336640:CDS
GCTCAGATTTCTCTACTTCA+AGG 0.437701 tig0001300:-53935 Msa1336640:CDS
GGGAGACTGTGTATGGTCTC+TGG 0.438621 tig0001300:+56841 None:intergenic
GGTCTCTGGGAGACTGTGTA+TGG 0.440018 tig0001300:+56834 None:intergenic
TCAAGTAGTTCGTGGCGAAT+CGG 0.452071 tig0001300:-58197 Msa1336640:CDS
AAGTCCTGAAGTGTTAAATC+AGG 0.452937 tig0001300:-54129 Msa1336640:CDS
TTCATCTGTGGTTGAAGTGC+AGG 0.453895 tig0001300:-54493 Msa1336640:intron
AGAATATGGATGCCCAGGGC+TGG 0.455278 tig0001300:-56127 Msa1336640:CDS
CCGAAACAATTGTGCACGCT+GGG 0.456605 tig0001300:-53197 Msa1336640:three_prime_UTR
ATGTCATTCCAGACAAGAAA+AGG 0.460496 tig0001300:+53312 Msa1336630:intron
ACGGCGGAAGACGACGTGAT+TGG 0.466397 tig0001300:+58224 None:intergenic
CCAAAAGGCCGCAATGGTGG+TGG 0.468564 tig0001300:+56524 None:intergenic
ACGACGTGATTGGAGGTTAT+CGG 0.469341 tig0001300:+58234 None:intergenic
GGTGAGCGCAATGGTGGTAC+TGG 0.469669 tig0001300:-58058 Msa1336640:CDS
GGAGACTGTGCATGGTCTCT+GGG 0.473303 tig0001300:+56821 None:intergenic
CGGAGGAATGATTAGGGGAA+TGG 0.474819 tig0001300:+58254 None:intergenic
GGTGGCCACATGGGATTCCA+TGG 0.476427 tig0001300:-56503 Msa1336640:intron
GGAACAGGCGTGATCAAGAC+TGG 0.476789 tig0001300:-56652 Msa1336640:CDS
TTGTTGTGTGCGTGCGTGCG+TGG 0.478522 tig0001300:+58501 None:intergenic
TTCGGAGGTTCAGCCGGTGA+TGG 0.478679 tig0001300:-57993 Msa1336640:CDS
CGATGAAGAAACGGCGGGAA+CGG 0.480310 tig0001300:+58162 None:intergenic
AATAAGGAGGCAAAATGATT+GGG 0.483247 tig0001300:-54195 Msa1336640:CDS
TCCACCGGAGCAGTTACAAT+CGG 0.484582 tig0001300:+58127 None:intergenic
TACGAAATCGGAGTCGTCGA+AGG 0.486676 tig0001300:-57927 Msa1336640:CDS
TTAGAGCTGCAAACGTGCTT+AGG 0.488374 tig0001300:-53907 Msa1336640:exon
GCGGAAGAATATGGATGCCC+AGG 0.489267 tig0001300:-56132 Msa1336640:CDS
CCAAGTTTCGATAGCTGCAT+CGG 0.489400 tig0001300:-56882 Msa1336640:CDS
ACCATCATAACTATGGGAAC+AGG 0.492989 tig0001300:-56667 Msa1336640:CDS
TCCGACTTGTCTTTGCATAG+AGG 0.493121 tig0001300:+57009 None:intergenic
GAATATGGATGCCCAGGGCT+GGG 0.496158 tig0001300:-56126 Msa1336640:CDS
AGAGGCATTGGAGGAACAAA+GGG 0.496505 tig0001300:+56344 None:intergenic
CGATGCAGCTATCGAAACTT+GGG 0.497367 tig0001300:+56883 None:intergenic
TAATCATTCGTTGTTATCGA+TGG 0.500645 tig0001300:-58290 Msa1336640:exon
GTAACATTAGGAAACTGAAC+AGG 0.501310 tig0001300:+54152 None:intergenic
GCATAATAAAGAGGCATTGG+AGG 0.506118 tig0001300:+56335 None:intergenic
CCACCGATAGATTCACTAAG+AGG 0.506893 tig0001300:-56371 Msa1336640:CDS
GGTCCACATCAGCGTGGAGA+TGG 0.507876 tig0001300:-56698 Msa1336640:CDS
AAAGCAGCTGAGGGGCAGTC+GGG 0.509014 tig0001300:+53525 None:intergenic
CGGTGTTTCGGAGGTTCAGC+CGG 0.509765 tig0001300:-57999 Msa1336640:CDS
AGTGAATCTATCGGTGGAGG+TGG 0.510618 tig0001300:+56377 None:intergenic
ATCTCTGATAACGCAGATAA+CGG 0.514514 tig0001300:-58082 Msa1336640:CDS
TGGAATAGGTCTTCCGGCAA+TGG 0.514969 tig0001300:-58022 Msa1336640:CDS
GCAAATGCACAATATTGCTC+TGG 0.519548 tig0001300:-54093 Msa1336640:CDS
ATAGCTACCTGCTGCTTCTG+AGG 0.521934 tig0001300:-53421 Msa1336640:three_prime_UTR
GGTCTCTTGGAGACTGTGCA+TGG 0.522510 tig0001300:+56813 None:intergenic
CCTCTTCCCTCAGAAGCAGC+AGG 0.525923 tig0001300:+53414 Msa1336630:CDS
GCTTTATCTGATTCCGCTCG+AGG 0.526248 tig0001300:-57953 Msa1336640:CDS
AATCCCATGTGGCCACCAAA+AGG 0.526566 tig0001300:+56509 None:intergenic
CGGCAATGGCGGTGTTTCGG+AGG 0.526823 tig0001300:-58008 Msa1336640:CDS
TTTCCCGATTGTAACTGCTC+CGG 0.530694 tig0001300:-58131 Msa1336640:CDS
AGATTCCTCCGATGAAGAAA+CGG 0.531484 tig0001300:+58153 None:intergenic
GCCTGTTCCCATAGTTATGA+TGG 0.532058 tig0001300:+56666 None:intergenic
TCACTAGTTGAGAGCTGCAA+TGG 0.533513 tig0001300:+53984 None:intergenic
ATGGATCTTCTGTTTCTCCA+TGG 0.533973 tig0001300:-57895 Msa1336640:CDS
AGCATCTTTGATGTGGTCCT+AGG 0.538334 tig0001300:+53362 Msa1336630:CDS
CAATGCCTCTTTATTATGCA+GGG 0.538400 tig0001300:-56331 Msa1336640:CDS
ATCTGGGGTCAGCTTCCCAC+CGG 0.538434 tig0001300:-53497 Msa1336640:three_prime_UTR
AATGGTGGTGGATGAATGAA+TGG 0.540490 tig0001300:+56536 None:intergenic
CAAGTTTCGATAGCTGCATC+GGG 0.540907 tig0001300:-56881 Msa1336640:CDS
CACGAGCGTGCATCCATCAC+CGG 0.541601 tig0001300:+57980 None:intergenic
TGTTGTGTGCGTGCGTGCGT+GGG 0.544979 tig0001300:+58502 None:intergenic
TTGATTGGTTTCTGGCGAGT+TGG 0.545084 tig0001300:+56959 None:intergenic
CCACCGGAGCAGTTACAATC+GGG 0.546670 tig0001300:+58128 None:intergenic
CAAATCCACTTCTCTGTGTG+TGG 0.546847 tig0001300:+56771 None:intergenic
GAAGAGGAAGAAGATGAAGA+AGG 0.547386 tig0001300:+58464 None:intergenic
TCCCGCCGTTTCTTCATCGG+AGG 0.548797 tig0001300:-58158 Msa1336640:CDS
AAATTGTGCGATCTAATCGC+AGG 0.549505 tig0001300:+58434 None:intergenic
GATTTGTGAGATTTAGATGA+AGG 0.549803 tig0001300:+58378 None:intergenic
CCGTGGAATCAAGTAGTTCG+TGG 0.550063 tig0001300:-58205 Msa1336640:CDS
CGTTATTGGAACCCAGCCCT+GGG 0.551803 tig0001300:+56115 None:intergenic
TGTCTTTGCATAGAGGAAGA+AGG 0.552018 tig0001300:+57016 None:intergenic
CTCACCACCATCATAACTAT+GGG 0.552412 tig0001300:-56673 Msa1336640:CDS
CCTGCATAATAAAGAGGCAT+TGG 0.552572 tig0001300:+56332 None:intergenic
ACAACTATCTATGATGGTGC+AGG 0.554245 tig0001300:-54068 Msa1336640:CDS
CCCGATTGTAACTGCTCCGG+TGG 0.555393 tig0001300:-58128 Msa1336640:CDS
GCGGAAGACGACGTGATTGG+AGG 0.555481 tig0001300:+58227 None:intergenic
CCACCAAAAGGCCGCAATGG+TGG 0.556739 tig0001300:+56521 None:intergenic
CCTGCTGCTTCTGAGGGAAG+AGG 0.557049 tig0001300:-53414 Msa1336640:three_prime_UTR
AATTCATTTAGACATCGTAA+TGG 0.558297 tig0001300:-56722 Msa1336640:CDS
GAGTTAAGGAGGACACTGGC+AGG 0.559141 tig0001300:-53854 Msa1336640:three_prime_UTR
CCCGAAACAATTGTGCACGC+TGG 0.559378 tig0001300:-53198 Msa1336640:three_prime_UTR
CCACGAACTACTTGATTCCA+CGG 0.561816 tig0001300:+58205 None:intergenic
CAACAGAAACAAACCTGCCA+TGG 0.562470 tig0001300:+57878 None:intergenic
TGGCCACCAAAAGGCCGCAA+TGG 0.562522 tig0001300:+56518 None:intergenic
AGAGACCACACACAGAGAAG+TGG 0.564958 tig0001300:-56776 Msa1336640:CDS
GTGCTCAAATCCCCAAATGC+AGG 0.566808 tig0001300:+54008 None:intergenic
ACGAAATCGGAGTCGTCGAA+GGG 0.566891 tig0001300:-57926 Msa1336640:CDS
AAAAGCAGCTGAGGGGCAGT+CGG 0.567836 tig0001300:+53524 None:intergenic
AAGAGGCATTGGAGGAACAA+AGG 0.568226 tig0001300:+56343 None:intergenic
GGAGCTGCAAATAATACCAC+TGG 0.568454 tig0001300:+56398 None:intergenic
TGAAGAAACGGCGGGAACGG+CGG 0.569828 tig0001300:+58165 None:intergenic
ATGTTCTTAGCCTTAGAGGA+TGG 0.572421 tig0001300:-53592 Msa1336640:three_prime_UTR
TCCTCTATGCAAAGACAAGT+CGG 0.578623 tig0001300:-57010 Msa1336640:CDS
GAACCATCTCCACGCTGATG+TGG 0.581578 tig0001300:+56695 None:intergenic
GGGGTGCAGACTGCTGTGTG+TGG 0.584093 tig0001300:+56903 None:intergenic
CTAGACCTGAAGAAGTTGCA+TGG 0.585213 tig0001300:-53160 Msa1336640:three_prime_UTR
ATTCTTGGAGAAACTCTTGG+TGG 0.585238 tig0001300:+56590 None:intergenic
CTGGAGACAACTATCTATGA+TGG 0.585382 tig0001300:-54074 Msa1336640:CDS
ACTATCTTGCTATGCAACTG+AGG 0.585731 tig0001300:+56302 None:intergenic
CTTAGTGAATCTATCGGTGG+AGG 0.585762 tig0001300:+56374 None:intergenic
TTCAAATGCATCTTCTAATG+GGG 0.586557 tig0001300:-56927 Msa1336640:CDS
TAGCTACCTGCTGCTTCTGA+GGG 0.586880 tig0001300:-53420 Msa1336640:three_prime_UTR
CCGGAAGACCTATTCCAAGC+AGG 0.589441 tig0001300:+58028 None:intergenic
TTAGGAAACTGAACAGGAGA+AGG 0.590429 tig0001300:+54158 None:intergenic
CTAAATGAATTACGCTGCTG+TGG 0.591207 tig0001300:+56734 None:intergenic
GCAGAATTAGGAGGCAGAGA+TGG 0.594443 tig0001300:+56560 None:intergenic
TGAAGGTGTGAGAGAAAATG+TGG 0.594507 tig0001300:+58395 None:intergenic
CGAGCGGAATCAGATAAAGC+AGG 0.595046 tig0001300:+57956 None:intergenic
TTCAGAACTAGCTGCTCCAG+TGG 0.596257 tig0001300:-56414 Msa1336640:intron
CGGAAGAATATGGATGCCCA+GGG 0.598987 tig0001300:-56131 Msa1336640:CDS
AGAGCATACACCTGCATTTG+GGG 0.599587 tig0001300:-54018 Msa1336640:CDS
ATCAGAGATCACTTCAGCAG+AGG 0.601515 tig0001300:+58096 None:intergenic
GAGGAAATATGGCTTTCTTG+TGG 0.601693 tig0001300:-53395 Msa1336640:three_prime_UTR
TCCTCCGATGAAGAAACGGC+GGG 0.602637 tig0001300:+58157 None:intergenic
TCATTTAGACATCGTAATGG+TGG 0.603196 tig0001300:-56719 Msa1336640:CDS
TCTGGCCCTGCATAATAAAG+AGG 0.605460 tig0001300:+56326 None:intergenic
GAAAAGGACGGAATATAGCA+AGG 0.605733 tig0001300:+53328 Msa1336630:CDS
GGTCTCTGGGAGACTGTGTG+TGG 0.607006 tig0001300:+56792 None:intergenic
CGGTGATGGATGCACGCTCG+TGG 0.617993 tig0001300:-57979 Msa1336640:CDS
AATAGGTCTTCCGGCAATGG+CGG 0.618218 tig0001300:-58019 Msa1336640:CDS
CTATCTTGCTATGCAACTGA+GGG 0.620241 tig0001300:+56303 None:intergenic
GGAGCCCATAAGAGTTAAGG+AGG 0.620757 tig0001300:-53865 Msa1336640:three_prime_UTR
AACGGAGGTGAGCGCAATGG+TGG 0.621354 tig0001300:-58064 Msa1336640:CDS
TTGCTTGCTTGAATTTGCGG+AGG 0.624364 tig0001300:-53567 Msa1336640:three_prime_UTR
AATCGCAGGGAATAATGAAG+AGG 0.626480 tig0001300:+58448 None:intergenic
TTGTTATCGATGGAAATGAT+CGG 0.627112 tig0001300:-58280 Msa1336640:exon
TCAAGCAAGCATCTTTGATG+TGG 0.631262 tig0001300:+53355 Msa1336630:CDS
AATCACGTCGTCTTCCGCCG+TGG 0.631568 tig0001300:-58222 Msa1336640:CDS
TGCAATTCGAACTTCATCTG+TGG 0.632236 tig0001300:-54505 Msa1336640:CDS
ATCACAATAGTCGCATCACT+AGG 0.634339 tig0001300:+53641 None:intergenic
AATTGTGCGATCTAATCGCA+GGG 0.640232 tig0001300:+58435 None:intergenic
AACAATCGTCGAAATTACAA+TGG 0.641091 tig0001300:-56629 Msa1336640:CDS
AAAATTGCATTAATACCGTG+TGG 0.641396 tig0001300:+53114 Msa1336630:intron
ACTATCTATGATGGTGCAGG+AGG 0.641777 tig0001300:-54065 Msa1336640:CDS
TGTATGGTCTCTGGAAGAAG+AGG 0.648052 tig0001300:+56850 None:intergenic
TAGTCAAAGATATATTCTTG+CGG 0.650528 tig0001300:-56151 Msa1336640:CDS
TTCCTCCGATGAAGAAACGG+CGG 0.651065 tig0001300:+58156 None:intergenic
ACACCTCTTAGTGAATCTAT+CGG 0.653591 tig0001300:+56368 None:intergenic
AAAAGGACGGAATATAGCAA+GGG 0.654748 tig0001300:+53329 Msa1336630:CDS
TCATTCATCCACCACCATTG+CGG 0.655632 tig0001300:-56532 Msa1336640:CDS
ATAAGAGTTAAGGAGGACAC+TGG 0.657959 tig0001300:-53858 Msa1336640:three_prime_UTR
TCAAATGCATCTTCTAATGG+GGG 0.659504 tig0001300:-56926 Msa1336640:CDS
GATAACGGAGGTGAGCGCAA+TGG 0.659786 tig0001300:-58067 Msa1336640:CDS
GACGTGGTCCAATAGATGAG+AGG 0.660363 tig0001300:+53032 Msa1336630:intron
ATGAATGGTGCAGAATTAGG+AGG 0.661115 tig0001300:+56551 None:intergenic
CCTCTTAGTGAATCTATCGG+TGG 0.662280 tig0001300:+56371 None:intergenic
CATTCCAGACAAGAAAAGGA+CGG 0.662587 tig0001300:+53316 Msa1336630:intron
GCAGAGGTAGAATCATCCAC+CGG 0.663830 tig0001300:+58112 None:intergenic
TATAGGGAGACAAAATAAGG+AGG 0.672967 tig0001300:-54208 Msa1336640:intron
GATGCAGCTATCGAAACTTG+GGG 0.675987 tig0001300:+56884 None:intergenic
CGAAACAATTGTGCACGCTG+GGG 0.677472 tig0001300:-53196 Msa1336640:three_prime_UTR
CGATTTCGTAGAACCTCGAG+CGG 0.678231 tig0001300:+57940 None:intergenic
TATTATATCTCTCTTCCACA+CGG 0.679731 tig0001300:-53129 Msa1336640:three_prime_UTR
GTACTGGTAAGAGACCTGCT+TGG 0.682614 tig0001300:-58042 Msa1336640:CDS
ACGTGATTGGAGGTTATCGG+AGG 0.690493 tig0001300:+58237 None:intergenic
ATTATCTCAGTCTTTGCACG+TGG 0.692325 tig0001300:-53822 Msa1336640:three_prime_UTR
TGTTCCCATAGTTATGATGG+TGG 0.702471 tig0001300:+56669 None:intergenic
TCTGATAACGCAGATAACGG+AGG 0.732118 tig0001300:-58079 Msa1336640:CDS
GTTATCGGAGGAATGATTAG+GGG 0.734352 tig0001300:+58249 None:intergenic
AATGGTGGTCCACATCAGCG+TGG 0.738654 tig0001300:-56704 Msa1336640:CDS
ACATACCATGGAATCCCATG+TGG 0.742129 tig0001300:+56498 None:intergenic
CGAACTACTTGATTCCACGG+CGG 0.836241 tig0001300:+58208 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAACAAACTATATTAAAT+TGG + tig0001300:53862-53881 None:intergenic 15.0%
!! TAATGTAAATGTAAACAATA+TGG - tig0001300:54670-54689 Msa1336640:intron 15.0%
!!! ATTTTAATTATTTGTTCTCT+TGG - tig0001300:56541-56560 Msa1336640:CDS 15.0%
!!! AATTTAATTTGATATTGCAT+CGG - tig0001300:57374-57393 Msa1336640:intron 15.0%
!!! AATGCAATTTTTATTTTACT+TGG - tig0001300:58552-58571 Msa1336640:five_prime_UTR 15.0%
!! TTATCAAAGAAAAAACCAAA+GGG - tig0001300:53054-53073 Msa1336640:three_prime_UTR 20.0%
!! TATGAAATTGAATTCATTGA+TGG - tig0001300:53942-53961 Msa1336640:CDS 20.0%
!!! TTGTTTTAAGTGTCAATTAT+AGG - tig0001300:54601-54620 Msa1336640:intron 20.0%
!!! TGTTTTAAGTGTCAATTATA+GGG - tig0001300:54602-54621 Msa1336640:intron 20.0%
!!! TTTTAAATTGCCTTTTTTGT+TGG - tig0001300:55428-55447 Msa1336640:intron 20.0%
!! CTTCAAAAAAGTAAGTAATT+TGG - tig0001300:55573-55592 Msa1336640:intron 20.0%
!! ATAATATAGAAAGCAAAAGT+AGG + tig0001300:56064-56083 None:intergenic 20.0%
!!! TTTTTCAGGAAATTCTTTTA+AGG - tig0001300:56221-56240 Msa1336640:intron 20.0%
!! ACTGTTGTCATTATTATTAT+TGG - tig0001300:56600-56619 Msa1336640:CDS 20.0%
!!! GTCATTATTATTATTGGTTT+TGG - tig0001300:56606-56625 Msa1336640:CDS 20.0%
!!! ACAAAACATAAAGATTTTCA+TGG + tig0001300:56722-56741 None:intergenic 20.0%
!!! TATTTTTCTAAATCTTGCAT+TGG - tig0001300:57184-57203 Msa1336640:intron 20.0%
!! TTCAATAAATTGATAGAACA+AGG + tig0001300:57288-57307 None:intergenic 20.0%
!!! AAGAGCTTTTTATTAGTTAA+TGG - tig0001300:58184-58203 Msa1336640:CDS 20.0%
!!! AGAGCTTTTTATTAGTTAAT+GGG - tig0001300:58185-58204 Msa1336640:CDS 20.0%
! GTTATCAAAGAAAAAACCAA+AGG - tig0001300:53053-53072 Msa1336640:three_prime_UTR 25.0%
! TCATAACAGTATTATGCATA+AGG + tig0001300:54065-54084 None:intergenic 25.0%
! AATTCATTTAGACATCGTAA+TGG - tig0001300:54932-54951 Msa1336640:intron 25.0%
! ATCAACTTAACCAACAAAAA+AGG + tig0001300:55441-55460 None:intergenic 25.0%
! TAGTCAAAGATATATTCTTG+CGG - tig0001300:55503-55522 Msa1336640:intron 25.0%
!! AATCATCTTCTACCTTTTAA+TGG - tig0001300:55751-55770 Msa1336640:intron 25.0%
!! TTCATCAGACAATTTGAAAT+AGG + tig0001300:55981-56000 None:intergenic 25.0%
!! AGCTAGTATTTTTCTCATTT+TGG - tig0001300:56004-56023 Msa1336640:intron 25.0%
!! GCTAGTATTTTTCTCATTTT+GGG - tig0001300:56005-56024 Msa1336640:intron 25.0%
!! CTAGTATTTTTCTCATTTTG+GGG - tig0001300:56006-56025 Msa1336640:intron 25.0%
!! TAGTATTTTTCTCATTTTGG+GGG - tig0001300:56007-56026 Msa1336640:intron 25.0%
! ATTATATGCAGTTCTATTTG+AGG - tig0001300:56079-56098 Msa1336640:intron 25.0%
!!! AAAGTTTACAGCTTTTTTTC+AGG - tig0001300:56207-56226 Msa1336640:intron 25.0%
! ATGTTACAATGGATATTGTT+TGG - tig0001300:56359-56378 Msa1336640:CDS 25.0%
!! CAAGCTTTTTATTCTTTTGA+CGG + tig0001300:56493-56512 None:intergenic 25.0%
! CAATGATTGTATCCATTAAA+TGG + tig0001300:56661-56680 None:intergenic 25.0%
!!! AATGTTGATTGATGCATTTT+TGG - tig0001300:56746-56765 Msa1336640:CDS 25.0%
! TATTGATGTAATTGCCTTAA+AGG - tig0001300:56769-56788 Msa1336640:CDS 25.0%
! AATTTCCAAGTTATCCTTTA+AGG + tig0001300:56786-56805 None:intergenic 25.0%
! ATTATGATGGTATATAGTTC+AGG + tig0001300:56839-56858 None:intergenic 25.0%
!! TTTGTAGTTTGTACTTATAG+TGG - tig0001300:56935-56954 Msa1336640:CDS 25.0%
! ATTTCGAAGACAATTTAGAT+GGG + tig0001300:57022-57041 None:intergenic 25.0%
! AATTTCGAAGACAATTTAGA+TGG + tig0001300:57023-57042 None:intergenic 25.0%
!! CATTTTTCTTAATCTTGCAT+TGG - tig0001300:57337-57356 Msa1336640:intron 25.0%
! AATAAGAAAATCAAAACAGC+AGG + tig0001300:57417-57436 None:intergenic 25.0%
! TATTATAGGGAGACAAAATA+AGG - tig0001300:57443-57462 Msa1336640:intron 25.0%
!! CATGTTTTCTGTTTTGTAAT+CGG + tig0001300:57921-57940 None:intergenic 25.0%
!!! CTTCTGTTTTCATTTTTAGA+GGG + tig0001300:57968-57987 None:intergenic 25.0%
!!! AACAGAAGGCATTTTATTTT+TGG - tig0001300:57980-57999 Msa1336640:CDS 25.0%
!!! CATTTTATTTTTGGTTGTTG+TGG - tig0001300:57989-58008 Msa1336640:CDS 25.0%
! TAATAAAAAGCTCTTGAAAC+CGG + tig0001300:58179-58198 None:intergenic 25.0%
AGAGAAAATGTGGTAGATTA+GGG + tig0001300:53252-53271 Msa1336630:intron 30.0%
GATTTGTGAGATTTAGATGA+AGG + tig0001300:53279-53298 Msa1336630:intron 30.0%
TCGATAACAACGAATGATTA+GGG + tig0001300:53364-53383 Msa1336630:CDS 30.0%
ATCGATAACAACGAATGATT+AGG + tig0001300:53365-53384 Msa1336630:CDS 30.0%
TAATCATTCGTTGTTATCGA+TGG - tig0001300:53364-53383 Msa1336640:three_prime_UTR 30.0%
TTGTTATCGATGGAAATGAT+CGG - tig0001300:53374-53393 Msa1336640:three_prime_UTR 30.0%
TGATTGAAGTGAATTTCAGT+AGG - tig0001300:53980-53999 Msa1336640:CDS 30.0%
ATGTTAAACTGAATCAACAG+TGG - tig0001300:54028-54047 Msa1336640:CDS 30.0%
CAGTATTATGCATAAGGTAA+AGG + tig0001300:54059-54078 None:intergenic 30.0%
AATGTAATCACATGATGTGT+CGG - tig0001300:54139-54158 Msa1336640:CDS 30.0%
ATTCTTCTCACTGTACAATT+TGG - tig0001300:54381-54400 Msa1336640:intron 30.0%
!!! GGTAAATGCAAGTTCTTTTT+TGG - tig0001300:54402-54421 Msa1336640:intron 30.0%
!!! TCTTTTTTGGTCTGAAGTTA+TGG - tig0001300:54415-54434 Msa1336640:intron 30.0%
AAGTTATGGAATATATGCAC+AGG - tig0001300:54429-54448 Msa1336640:intron 30.0%
AGTTATGGAATATATGCACA+GGG - tig0001300:54430-54449 Msa1336640:intron 30.0%
TAAGTGTCAATTATAGGGTA+TGG - tig0001300:54607-54626 Msa1336640:intron 30.0%
TTTGAACTGTTGTGTTTGAT+TGG + tig0001300:54713-54732 None:intergenic 30.0%
AGTTCAAATGCATCTTCTAA+TGG - tig0001300:54725-54744 Msa1336640:intron 30.0%
GTTCAAATGCATCTTCTAAT+GGG - tig0001300:54726-54745 Msa1336640:intron 30.0%
TTCAAATGCATCTTCTAATG+GGG - tig0001300:54727-54746 Msa1336640:intron 30.0%
AACAATCGTCGAAATTACAA+TGG - tig0001300:55025-55044 Msa1336640:intron 30.0%
ATAATTCTTGGAGAAACTCT+TGG + tig0001300:55070-55089 None:intergenic 30.0%
GAGTTTCTCCAAGAATTATA+AGG - tig0001300:55071-55090 Msa1336640:intron 30.0%
GACATTAATACAACATACCA+TGG + tig0001300:55171-55190 None:intergenic 30.0%
ATGTCAAGATGATTTCTTTC+AGG - tig0001300:55186-55205 Msa1336640:intron 30.0%
! ACCAGATTGACTACTATTTT+AGG - tig0001300:55377-55396 Msa1336640:intron 30.0%
ACCTAAAATAGTAGTCAATC+TGG + tig0001300:55381-55400 None:intergenic 30.0%
!! TTTAGGTACTGCTTTTACTT+TGG - tig0001300:55394-55413 Msa1336640:intron 30.0%
TATATTCTTGCGGAAGAATA+TGG - tig0001300:55513-55532 Msa1336640:intron 30.0%
TAAATTACTGCTGAAGTAGA+AGG - tig0001300:55714-55733 Msa1336640:intron 30.0%
! AGCCACTTGTTTACAAATTT+TGG - tig0001300:55775-55794 Msa1336640:intron 30.0%
! CAGACAATTTGAAATAGGTA+GGG + tig0001300:55976-55995 None:intergenic 30.0%
! TCAGACAATTTGAAATAGGT+AGG + tig0001300:55977-55996 None:intergenic 30.0%
GTGTATCACTAAATTAGACT+AGG - tig0001300:56133-56152 Msa1336640:CDS 30.0%
TCTGTAATCCATATCTTGTT+TGG - tig0001300:56286-56305 Msa1336640:CDS 30.0%
TTCAAAGTCCAAACAAGATA+TGG + tig0001300:56297-56316 None:intergenic 30.0%
TGTAACATATAATACCCAGT+AGG + tig0001300:56347-56366 None:intergenic 30.0%
CTGGGTATTATATGTTACAA+TGG - tig0001300:56348-56367 Msa1336640:CDS 30.0%
ATTGTGCATACATTCATGTA+TGG + tig0001300:56467-56486 None:intergenic 30.0%
AGCTAAAGTAGACCATTTAA+TGG - tig0001300:56646-56665 Msa1336640:CDS 30.0%
!!! TTGTTGTGCTTTTGATTTCT+TGG - tig0001300:56678-56697 Msa1336640:CDS 30.0%
AATTGCCTTAAAGGATAACT+TGG - tig0001300:56778-56797 Msa1336640:CDS 30.0%
GTCTTCGAAATTCTTCTATT+TGG - tig0001300:57031-57050 Msa1336640:CDS 30.0%
AATAGATGCACAAATTTAGC+TGG - tig0001300:57232-57251 Msa1336640:intron 30.0%
AAATAAGGAGGCAAAATGAT+TGG - tig0001300:57458-57477 Msa1336640:intron 30.0%
AATAAGGAGGCAAAATGATT+GGG - tig0001300:57459-57478 Msa1336640:intron 30.0%
GAATTATCTGATAGAACAAC+TGG + tig0001300:57616-57635 None:intergenic 30.0%
!!! AGGCACTTCAGTTTTTTTTT+TGG - tig0001300:57767-57786 Msa1336640:intron 30.0%
!!! GGCACTTCAGTTTTTTTTTT+GGG - tig0001300:57768-57787 Msa1336640:intron 30.0%
TAAATTCTCGTGAGACATTT+AGG - tig0001300:57865-57884 Msa1336640:intron 30.0%
GGATAACATGATTGTTGAAT+AGG - tig0001300:57886-57905 Msa1336640:intron 30.0%
!! TGTTTTCATTTTTAGAGGGA+GGG + tig0001300:57964-57983 None:intergenic 30.0%
!! CCTTCTGTTTTCATTTTTAG+AGG + tig0001300:57969-57988 None:intergenic 30.0%
! CCTCTAAAAATGAAAACAGA+AGG - tig0001300:57966-57985 Msa1336640:CDS 30.0%
!! AGATTTTAAAAAGCAGCTGA+GGG + tig0001300:58141-58160 None:intergenic 30.0%
!!! TCAGCTGCTTTTTAAAATCT+GGG - tig0001300:58141-58160 Msa1336640:CDS 30.0%
TATTATATCTCTCTTCCACA+CGG - tig0001300:58525-58544 Msa1336640:five_prime_UTR 30.0%
AAAATTGCATTAATACCGTG+TGG + tig0001300:58543-58562 None:intergenic 30.0%
! GGATGCTAGTTACGATTTTA+CGG + tig0001300:53085-53104 Msa1336630:intron 35.0%
! CGATTAGATCGCACAATTTT+TGG - tig0001300:53224-53243 Msa1336640:three_prime_UTR 35.0%
GAGAGAAAATGTGGTAGATT+AGG + tig0001300:53253-53272 Msa1336630:intron 35.0%
! ATCTCTGATAACGCAGATAA+CGG - tig0001300:53572-53591 Msa1336640:three_prime_UTR 35.0%
GGACAAATCATTGAAATCGT+AGG + tig0001300:53841-53860 None:intergenic 35.0%
GAAGTGAATTTCAGTAGGTT+AGG - tig0001300:53985-54004 Msa1336640:CDS 35.0%
TAGGATCAGTATGTATTGCA+TGG - tig0001300:54004-54023 Msa1336640:CDS 35.0%
TTCATTGTAACCACAAGTGT+CGG - tig0001300:54235-54254 Msa1336640:intron 35.0%
CTATACAATGACACTTCTGA+TGG + tig0001300:54340-54359 None:intergenic 35.0%
! GTGTCATTGTATAGAGTTTC+AGG - tig0001300:54346-54365 Msa1336640:intron 35.0%
ATAGCATTTCACAATCCATC+AGG + tig0001300:54499-54518 None:intergenic 35.0%
!! TGTTGTGTTTGATTGGTTTC+TGG + tig0001300:54706-54725 None:intergenic 35.0%
TCAAATGCATCTTCTAATGG+GGG - tig0001300:54728-54747 Msa1336640:intron 35.0%
TCATTTAGACATCGTAATGG+TGG - tig0001300:54935-54954 Msa1336640:intron 35.0%
!! AGAGATGGCCTTATAATTCT+TGG + tig0001300:55082-55101 None:intergenic 35.0%
TGAATGAATGGTGCAGAATT+AGG + tig0001300:55109-55128 None:intergenic 35.0%
ACACCTCTTAGTGAATCTAT+CGG + tig0001300:55289-55308 None:intergenic 35.0%
CAATGCCTCTTTATTATGCA+GGG - tig0001300:55323-55342 Msa1336640:intron 35.0%
AACAAGTGGCTTCCATTAAA+AGG + tig0001300:55766-55785 None:intergenic 35.0%
CGCCAAAATTTGTAAACAAG+TGG + tig0001300:55780-55799 None:intergenic 35.0%
!! TTACAAATTTTGGCGCTTCT+TGG - tig0001300:55785-55804 Msa1336640:intron 35.0%
AATATAACTATGCAGCCATG+GGG + tig0001300:55940-55959 None:intergenic 35.0%
CAATATAACTATGCAGCCAT+GGG + tig0001300:55941-55960 None:intergenic 35.0%
CAGTTCTATTTGAGGAATCT+GGG - tig0001300:56087-56106 Msa1336640:intron 35.0%
!!! GAAGTTGTTTTAGTGTCTTG+AGG - tig0001300:56183-56202 Msa1336640:intron 35.0%
!!! CAGGAAATTCTTTTAAGGCA+AGG - tig0001300:56226-56245 Msa1336640:intron 35.0%
TGGATATTGTTTGGTTGTGT+TGG - tig0001300:56368-56387 Msa1336640:CDS 35.0%
! ACTCATGTTTTTCCAGTCAA+GGG + tig0001300:56423-56442 None:intergenic 35.0%
! AACTCATGTTTTTCCAGTCA+AGG + tig0001300:56424-56443 None:intergenic 35.0%
GACAACAGTGATGCTTAATA+TGG + tig0001300:56589-56608 None:intergenic 35.0%
! AGTGTCGGACATAATTATGA+TGG + tig0001300:56852-56871 None:intergenic 35.0%
ATCATAATTATGTCCGACAC+TGG - tig0001300:56851-56870 Msa1336640:CDS 35.0%
!! GTAATACCTGCTTCAAGTTT+TGG - tig0001300:56912-56931 Msa1336640:CDS 35.0%
TACAAACCAAAACTTGAAGC+AGG + tig0001300:56921-56940 None:intergenic 35.0%
! GAAGACAATTTAGATGGGTT+TGG + tig0001300:57017-57036 None:intergenic 35.0%
TATAGGGAGACAAAATAAGG+AGG - tig0001300:57446-57465 Msa1336640:intron 35.0%
GTAACATTAGGAAACTGAAC+AGG + tig0001300:57505-57524 None:intergenic 35.0%
ACTTCAGGACTTGTAACATT+AGG + tig0001300:57517-57536 None:intergenic 35.0%
! AAGTCCTGAAGTGTTAAATC+AGG - tig0001300:57525-57544 Msa1336640:intron 35.0%
ATGTCCTGATTTAACACTTC+AGG + tig0001300:57532-57551 None:intergenic 35.0%
CTCTCAACTAGTGAAATTAC+TGG - tig0001300:57679-57698 Msa1336640:intron 35.0%
!! TTTTCATTTTTAGAGGGAGG+GGG + tig0001300:57962-57981 None:intergenic 35.0%
!! GTTTTCATTTTTAGAGGGAG+GGG + tig0001300:57963-57982 None:intergenic 35.0%
!! CTGTTTTCATTTTTAGAGGG+AGG + tig0001300:57965-57984 None:intergenic 35.0%
!! ATGTATGTTCTTAGCCTTAG+AGG - tig0001300:58058-58077 Msa1336640:CDS 35.0%
! GTTTTGCTTGCTTGAATTTG+CGG - tig0001300:58084-58103 Msa1336640:CDS 35.0%
! TTGAATTTGCGGAGGAATTT+TGG - tig0001300:58095-58114 Msa1336640:CDS 35.0%
!! GATTTTAAAAAGCAGCTGAG+GGG + tig0001300:58140-58159 None:intergenic 35.0%
!! CAGATTTTAAAAAGCAGCTG+AGG + tig0001300:58142-58161 None:intergenic 35.0%
!!! CTCAGCTGCTTTTTAAAATC+TGG - tig0001300:58140-58159 Msa1336640:CDS 35.0%
!!! CAGCTGCTTTTTAAAATCTG+GGG - tig0001300:58142-58161 Msa1336640:CDS 35.0%
AAAAGGACGGAATATAGCAA+GGG + tig0001300:58328-58347 None:intergenic 35.0%
ATGTCATTCCAGACAAGAAA+AGG + tig0001300:58345-58364 None:intergenic 35.0%
! GATTTTACGGAAAAGCCCTT+TGG + tig0001300:53072-53091 Msa1336630:intron 40.0%
GAAAGATTGCAACAACGCTT+TGG + tig0001300:53106-53125 Msa1336630:intron 40.0%
GAAGAGGAAGAAGATGAAGA+AGG + tig0001300:53193-53212 Msa1336630:intron 40.0%
AATCGCAGGGAATAATGAAG+AGG + tig0001300:53209-53228 Msa1336630:intron 40.0%
AATTGTGCGATCTAATCGCA+GGG + tig0001300:53222-53241 Msa1336630:intron 40.0%
AAATTGTGCGATCTAATCGC+AGG + tig0001300:53223-53242 Msa1336630:intron 40.0%
! TGAAGGTGTGAGAGAAAATG+TGG + tig0001300:53262-53281 Msa1336630:intron 40.0%
GTTATCGGAGGAATGATTAG+GGG + tig0001300:53408-53427 Msa1336630:CDS 40.0%
GGTTATCGGAGGAATGATTA+GGG + tig0001300:53409-53428 Msa1336630:CDS 40.0%
AGGTTATCGGAGGAATGATT+AGG + tig0001300:53410-53429 Msa1336630:CDS 40.0%
AGATTCCTCCGATGAAGAAA+CGG + tig0001300:53504-53523 None:intergenic 40.0%
! ATGGATCTTCTGTTTCTCCA+TGG - tig0001300:53759-53778 Msa1336640:three_prime_UTR 40.0%
ACTGTTATGAACCACTGACA+TGG - tig0001300:54075-54094 Msa1336640:CDS 40.0%
AATATTGATGTCGCCATGTC+TGG + tig0001300:54193-54212 None:intergenic 40.0%
ACAATGACACTTCTGATGGA+AGG + tig0001300:54336-54355 None:intergenic 40.0%
TGTCTTTGCATAGAGGAAGA+AGG + tig0001300:54641-54660 None:intergenic 40.0%
TCCTCTATGCAAAGACAAGT+CGG - tig0001300:54644-54663 Msa1336640:intron 40.0%
CTAAATGAATTACGCTGCTG+TGG + tig0001300:54923-54942 None:intergenic 40.0%
TCTCACCACCATCATAACTA+TGG - tig0001300:54980-54999 Msa1336640:intron 40.0%
CTCACCACCATCATAACTAT+GGG - tig0001300:54981-55000 Msa1336640:intron 40.0%
TGTTCCCATAGTTATGATGG+TGG + tig0001300:54988-55007 None:intergenic 40.0%
ACCATCATAACTATGGGAAC+AGG - tig0001300:54987-55006 Msa1336640:intron 40.0%
ATTCTTGGAGAAACTCTTGG+TGG + tig0001300:55067-55086 None:intergenic 40.0%
ATGAATGGTGCAGAATTAGG+AGG + tig0001300:55106-55125 None:intergenic 40.0%
!! AATGGTGGTGGATGAATGAA+TGG + tig0001300:55121-55140 None:intergenic 40.0%
!! GCATAATAAAGAGGCATTGG+AGG + tig0001300:55322-55341 None:intergenic 40.0%
! CCTGCATAATAAAGAGGCAT+TGG + tig0001300:55325-55344 None:intergenic 40.0%
CCAATGCCTCTTTATTATGC+AGG - tig0001300:55322-55341 Msa1336640:intron 40.0%
! CTATCTTGCTATGCAACTGA+GGG + tig0001300:55354-55373 None:intergenic 40.0%
! ACTATCTTGCTATGCAACTG+AGG + tig0001300:55355-55374 None:intergenic 40.0%
GTTCCAATAACGCTAATTGC+TGG - tig0001300:55550-55569 Msa1336640:intron 40.0%
AAGCCAGCAATTAGCGTTAT+TGG + tig0001300:55556-55575 None:intergenic 40.0%
!! AATTTTGGCGCTTCTTGGAA+AGG - tig0001300:55790-55809 Msa1336640:intron 40.0%
GCAATATAACTATGCAGCCA+TGG + tig0001300:55942-55961 None:intergenic 40.0%
! TTTGAAATAGGTAGGGTGCT+AGG + tig0001300:55969-55988 None:intergenic 40.0%
GCAGTTCTATTTGAGGAATC+TGG - tig0001300:56086-56105 Msa1336640:intron 40.0%
AAAACGTGAAACATGCCTAC+TGG - tig0001300:56329-56348 Msa1336640:CDS 40.0%
AAACGTGAAACATGCCTACT+GGG - tig0001300:56330-56349 Msa1336640:CDS 40.0%
! AGATTTTCATGGTGCACTCT+TGG + tig0001300:56711-56730 None:intergenic 40.0%
TGAAAATATTTCCGTCTGCC+AGG - tig0001300:57089-57108 Msa1336640:intron 40.0%
TGCAATTCGAACTTCATCTG+TGG - tig0001300:57149-57168 Msa1336640:intron 40.0%
GGCAAAATGATTGGGAGAAA+TGG - tig0001300:57467-57486 Msa1336640:intron 40.0%
TTAGGAAACTGAACAGGAGA+AGG + tig0001300:57499-57518 None:intergenic 40.0%
GCAAATGCACAATATTGCTC+TGG - tig0001300:57561-57580 Msa1336640:intron 40.0%
CTGGAGACAACTATCTATGA+TGG - tig0001300:57580-57599 Msa1336640:intron 40.0%
! ACAACTATCTATGATGGTGC+AGG - tig0001300:57586-57605 Msa1336640:intron 40.0%
!! ACTGGTCAAGTTGACATTCA+TGG - tig0001300:57697-57716 Msa1336640:intron 40.0%
GCTCAGATTTCTCTACTTCA+AGG - tig0001300:57719-57738 Msa1336640:intron 40.0%
GTGTCCTCCTTAACTCTTAT+GGG + tig0001300:57796-57815 None:intergenic 40.0%
AGTGTCCTCCTTAACTCTTA+TGG + tig0001300:57797-57816 None:intergenic 40.0%
ATAAGAGTTAAGGAGGACAC+TGG - tig0001300:57796-57815 Msa1336640:intron 40.0%
ATTATCTCAGTCTTTGCACG+TGG - tig0001300:57832-57851 Msa1336640:intron 40.0%
ATCACAATAGTCGCATCACT+AGG + tig0001300:58016-58035 None:intergenic 40.0%
!! ATGTTCTTAGCCTTAGAGGA+TGG - tig0001300:58062-58081 Msa1336640:CDS 40.0%
AAAAAGCTCTTGAAACCGGT+GGG + tig0001300:58175-58194 None:intergenic 40.0%
TAAAAAGCTCTTGAAACCGG+TGG + tig0001300:58176-58195 None:intergenic 40.0%
! TTCTGAGGGAAGAGGAAATA+TGG - tig0001300:58248-58267 Msa1336640:CDS 40.0%
GAGGAAATATGGCTTTCTTG+TGG - tig0001300:58259-58278 Msa1336640:CDS 40.0%
TCAAGCAAGCATCTTTGATG+TGG + tig0001300:58302-58321 None:intergenic 40.0%
GAAAAGGACGGAATATAGCA+AGG + tig0001300:58329-58348 None:intergenic 40.0%
! TATTCCGTCCTTTTCTTGTC+TGG - tig0001300:58334-58353 Msa1336640:five_prime_UTR 40.0%
CATTCCAGACAAGAAAAGGA+CGG + tig0001300:58341-58360 None:intergenic 40.0%
ACTATCCATGCAACTTCTTC+AGG + tig0001300:58502-58521 None:intergenic 40.0%
ACGACGTGATTGGAGGTTAT+CGG + tig0001300:53423-53442 None:intergenic 45.0%
CCACGAACTACTTGATTCCA+CGG + tig0001300:53452-53471 None:intergenic 45.0%
TCAAGTAGTTCGTGGCGAAT+CGG - tig0001300:53457-53476 Msa1336640:three_prime_UTR 45.0%
TTTCCCGATTGTAACTGCTC+CGG - tig0001300:53523-53542 Msa1336640:three_prime_UTR 45.0%
ATCAGAGATCACTTCAGCAG+AGG + tig0001300:53561-53580 None:intergenic 45.0%
! TCTGATAACGCAGATAACGG+AGG - tig0001300:53575-53594 Msa1336640:three_prime_UTR 45.0%
GTAAGAGACCTGCTTGGAAT+AGG - tig0001300:53618-53637 Msa1336640:three_prime_UTR 45.0%
!! TCGTCGAAGGGTTTGTTAGA+TGG - tig0001300:53740-53759 Msa1336640:three_prime_UTR 45.0%
! ATCTTCTGTTTCTCCATGGC+AGG - tig0001300:53763-53782 Msa1336640:three_prime_UTR 45.0%
CAACAGAAACAAACCTGCCA+TGG + tig0001300:53779-53798 None:intergenic 45.0%
ATGAAGCACGGACACAAACA+CGG - tig0001300:54164-54183 Msa1336640:CDS 45.0%
! TTCTGATTGAAGGCATGTCC+CGG + tig0001300:54279-54298 None:intergenic 45.0%
ATATATGCACAGGGAGCTGT+AGG - tig0001300:54439-54458 Msa1336640:intron 45.0%
! TCCGACTTGTCTTTGCATAG+AGG + tig0001300:54648-54667 None:intergenic 45.0%
!! TTGATTGGTTTCTGGCGAGT+TGG + tig0001300:54698-54717 None:intergenic 45.0%
GATGCAGCTATCGAAACTTG+GGG + tig0001300:54773-54792 None:intergenic 45.0%
CGATGCAGCTATCGAAACTT+GGG + tig0001300:54774-54793 None:intergenic 45.0%
CCAAGTTTCGATAGCTGCAT+CGG - tig0001300:54772-54791 Msa1336640:intron 45.0%
CAAGTTTCGATAGCTGCATC+GGG - tig0001300:54773-54792 Msa1336640:intron 45.0%
! TGTATGGTCTCTGGAAGAAG+AGG + tig0001300:54807-54826 None:intergenic 45.0%
CAAATCCACTTCTCTGTGTG+TGG + tig0001300:54886-54905 None:intergenic 45.0%
GCCTGTTCCCATAGTTATGA+TGG + tig0001300:54991-55010 None:intergenic 45.0%
TCATTCATCCACCACCATTG+CGG - tig0001300:55122-55141 Msa1336640:intron 45.0%
ACATACCATGGAATCCCATG+TGG + tig0001300:55159-55178 None:intergenic 45.0%
GGAGCTGCAAATAATACCAC+TGG + tig0001300:55259-55278 None:intergenic 45.0%
CTTAGTGAATCTATCGGTGG+AGG + tig0001300:55283-55302 None:intergenic 45.0%
CCTCTTAGTGAATCTATCGG+TGG + tig0001300:55286-55305 None:intergenic 45.0%
CCACCGATAGATTCACTAAG+AGG - tig0001300:55283-55302 Msa1336640:intron 45.0%
!! AGAGGCATTGGAGGAACAAA+GGG + tig0001300:55313-55332 None:intergenic 45.0%
!! AAGAGGCATTGGAGGAACAA+AGG + tig0001300:55314-55333 None:intergenic 45.0%
TCTGGCCCTGCATAATAAAG+AGG + tig0001300:55331-55350 None:intergenic 45.0%
TATGTGAGAGAGAGAGAGTG+AGG - tig0001300:55613-55632 Msa1336640:intron 45.0%
ATGACAATCCAGCACGACAA+TGG - tig0001300:55897-55916 Msa1336640:intron 45.0%
! AATAGGTAGGGTGCTAGGTT+TGG + tig0001300:55964-55983 None:intergenic 45.0%
!! GTTGTGTTGGCTTCTGCAAT+AGG - tig0001300:56381-56400 Msa1336640:CDS 45.0%
! TGCAATAGGTGCCTTTTGTC+AGG - tig0001300:56395-56414 Msa1336640:CDS 45.0%
TGTCAGTCAAATCCATGACC+TGG + tig0001300:57110-57129 None:intergenic 45.0%
TTCATCTGTGGTTGAAGTGC+AGG - tig0001300:57161-57180 Msa1336640:intron 45.0%
! ACTATCTATGATGGTGCAGG+AGG - tig0001300:57589-57608 Msa1336640:intron 45.0%
TCAGAGCATACACCTGCATT+TGG - tig0001300:57634-57653 Msa1336640:intron 45.0%
CAGAGCATACACCTGCATTT+GGG - tig0001300:57635-57654 Msa1336640:intron 45.0%
AGAGCATACACCTGCATTTG+GGG - tig0001300:57636-57655 Msa1336640:intron 45.0%
TCACTAGTTGAGAGCTGCAA+TGG + tig0001300:57673-57692 None:intergenic 45.0%
TTAGAGCTGCAAACGTGCTT+AGG - tig0001300:57747-57766 Msa1336640:intron 45.0%
TTGGGAGCCCATAAGAGTTA+AGG - tig0001300:57786-57805 Msa1336640:intron 45.0%
GCAAGCAAAACCATCCTCTA+AGG + tig0001300:58075-58094 None:intergenic 45.0%
TTGCTTGCTTGAATTTGCGG+AGG - tig0001300:58087-58106 Msa1336640:CDS 45.0%
AGCATCTTTGATGTGGTCCT+AGG + tig0001300:58295-58314 None:intergenic 45.0%
CTAGACCTGAAGAAGTTGCA+TGG - tig0001300:58494-58513 Msa1336640:five_prime_UTR 45.0%
!! AACAAATAATTAAAATTAAA+AGG + tig0001300:56537-56556 None:intergenic 5.0%
!!! TTCTTATTTATTTATATTAT+AGG - tig0001300:57429-57448 Msa1336640:intron 5.0%
!!! TCTTATTTATTTATATTATA+GGG - tig0001300:57430-57449 Msa1336640:intron 5.0%
CGGAGGAATGATTAGGGGAA+TGG + tig0001300:53403-53422 Msa1336630:CDS 50.0%
ACGTGATTGGAGGTTATCGG+AGG + tig0001300:53420-53439 Msa1336630:CDS 50.0%
CGAACTACTTGATTCCACGG+CGG + tig0001300:53449-53468 None:intergenic 50.0%
CCGTGGAATCAAGTAGTTCG+TGG - tig0001300:53449-53468 Msa1336640:three_prime_UTR 50.0%
TTCCTCCGATGAAGAAACGG+CGG + tig0001300:53501-53520 None:intergenic 50.0%
TCCACCGGAGCAGTTACAAT+CGG + tig0001300:53530-53549 None:intergenic 50.0%
GCAGAGGTAGAATCATCCAC+CGG + tig0001300:53545-53564 None:intergenic 50.0%
! GTACTGGTAAGAGACCTGCT+TGG - tig0001300:53612-53631 Msa1336640:three_prime_UTR 50.0%
CCTGCTTGGAATAGGTCTTC+CGG - tig0001300:53626-53645 Msa1336640:three_prime_UTR 50.0%
TGGAATAGGTCTTCCGGCAA+TGG - tig0001300:53632-53651 Msa1336640:three_prime_UTR 50.0%
AATAGGTCTTCCGGCAATGG+CGG - tig0001300:53635-53654 Msa1336640:three_prime_UTR 50.0%
CGAGCGGAATCAGATAAAGC+AGG + tig0001300:53701-53720 None:intergenic 50.0%
GCTTTATCTGATTCCGCTCG+AGG - tig0001300:53701-53720 Msa1336640:three_prime_UTR 50.0%
CGATTTCGTAGAACCTCGAG+CGG + tig0001300:53717-53736 None:intergenic 50.0%
CGCTCGAGGTTCTACGAAAT+CGG - tig0001300:53715-53734 Msa1336640:three_prime_UTR 50.0%
TACGAAATCGGAGTCGTCGA+AGG - tig0001300:53727-53746 Msa1336640:three_prime_UTR 50.0%
ACGAAATCGGAGTCGTCGAA+GGG - tig0001300:53728-53747 Msa1336640:three_prime_UTR 50.0%
ATGTCGTGTGTCCATGTCAG+TGG + tig0001300:54089-54108 None:intergenic 50.0%
!! GATGTGTCGGCTATGAAGCA+CGG - tig0001300:54152-54171 Msa1336640:CDS 50.0%
ACAAACACGGACACCAGACA+TGG - tig0001300:54177-54196 Msa1336640:CDS 50.0%
TGACACAACACCGACACTTG+TGG + tig0001300:54248-54267 None:intergenic 50.0%
GCATGGACGCTTCTGATTGA+AGG + tig0001300:54289-54308 None:intergenic 50.0%
TCCATCAGGTCGCAAAGACA+TGG + tig0001300:54485-54504 None:intergenic 50.0%
CCGATGCAGCTATCGAAACT+TGG + tig0001300:54775-54794 None:intergenic 50.0%
CTTCTCTGTGTGTGGTCTCT+GGG + tig0001300:54878-54897 None:intergenic 50.0%
ACTTCTCTGTGTGTGGTCTC+TGG + tig0001300:54879-54898 None:intergenic 50.0%
AGAGACCACACACAGAGAAG+TGG - tig0001300:54878-54897 Msa1336640:intron 50.0%
GCAGAATTAGGAGGCAGAGA+TGG + tig0001300:55097-55116 None:intergenic 50.0%
AATCCCATGTGGCCACCAAA+AGG + tig0001300:55148-55167 None:intergenic 50.0%
TTCAGAACTAGCTGCTCCAG+TGG - tig0001300:55240-55259 Msa1336640:intron 50.0%
AGTGAATCTATCGGTGGAGG+TGG + tig0001300:55280-55299 None:intergenic 50.0%
TTGCTATGCAACTGAGGGTC+TGG + tig0001300:55349-55368 None:intergenic 50.0%
CGGAAGAATATGGATGCCCA+GGG - tig0001300:55523-55542 Msa1336640:intron 50.0%
ATGCTACACCATTGTCGTGC+TGG + tig0001300:55908-55927 None:intergenic 50.0%
TAGCATGTGTTGTCTCCCCA+TGG - tig0001300:55922-55941 Msa1336640:intron 50.0%
AGTCAAGGGAGCCTGACAAA+AGG + tig0001300:56409-56428 None:intergenic 50.0%
! TTTTGTCAGGCTCCCTTGAC+TGG - tig0001300:56408-56427 Msa1336640:CDS 50.0%
TATTTCCGTCTGCCAGGTCA+TGG - tig0001300:57095-57114 Msa1336640:intron 50.0%
CAAATCCATGACCTGGCAGA+CGG + tig0001300:57103-57122 None:intergenic 50.0%
GTGCTCAAATCCCCAAATGC+AGG + tig0001300:57649-57668 None:intergenic 50.0%
GGAGCCCATAAGAGTTAAGG+AGG - tig0001300:57789-57808 Msa1336640:intron 50.0%
! ATAGCTACCTGCTGCTTCTG+AGG - tig0001300:58233-58252 Msa1336640:CDS 50.0%
! TAGCTACCTGCTGCTTCTGA+GGG - tig0001300:58234-58253 Msa1336640:CDS 50.0%
CCAGCGTGCACAATTGTTTC+GGG + tig0001300:58459-58478 None:intergenic 50.0%
CCCAGCGTGCACAATTGTTT+CGG + tig0001300:58460-58479 None:intergenic 50.0%
CCGAAACAATTGTGCACGCT+GGG - tig0001300:58457-58476 Msa1336640:five_prime_UTR 50.0%
CGAAACAATTGTGCACGCTG+GGG - tig0001300:58458-58477 Msa1336640:five_prime_UTR 50.0%
CGATGAAGAAACGGCGGGAA+CGG + tig0001300:53495-53514 None:intergenic 55.0%
CGTTCCCGCCGTTTCTTCAT+CGG - tig0001300:53493-53512 Msa1336640:three_prime_UTR 55.0%
TCCTCCGATGAAGAAACGGC+GGG + tig0001300:53500-53519 None:intergenic 55.0%
CCACCGGAGCAGTTACAATC+GGG + tig0001300:53529-53548 None:intergenic 55.0%
!! GATAACGGAGGTGAGCGCAA+TGG - tig0001300:53587-53606 Msa1336640:three_prime_UTR 55.0%
CCGGAAGACCTATTCCAAGC+AGG + tig0001300:53629-53648 None:intergenic 55.0%
TTCCGGCAATGGCGGTGTTT+CGG - tig0001300:53643-53662 Msa1336640:three_prime_UTR 55.0%
!! GTGTTGTGTCACCGACTCAC+CGG - tig0001300:54257-54276 Msa1336640:intron 55.0%
!! TGTTGTGTCACCGACTCACC+GGG - tig0001300:54258-54277 Msa1336640:intron 55.0%
GCGTCCATGCAACAGTGTGT+CGG - tig0001300:54299-54318 Msa1336640:intron 55.0%
GAGTCCGACACACTGTTGCA+TGG + tig0001300:54306-54325 None:intergenic 55.0%
GCCATGTCTTTGCGACCTGA+TGG - tig0001300:54481-54500 Msa1336640:intron 55.0%
GGGAGACTGTGTATGGTCTC+TGG + tig0001300:54816-54835 None:intergenic 55.0%
! GGTCTCTGGGAGACTGTGTA+TGG + tig0001300:54823-54842 None:intergenic 55.0%
GGAGACTGTGCATGGTCTCT+GGG + tig0001300:54836-54855 None:intergenic 55.0%
TGGAGACTGTGCATGGTCTC+TGG + tig0001300:54837-54856 None:intergenic 55.0%
GGTCTCTTGGAGACTGTGCA+TGG + tig0001300:54844-54863 None:intergenic 55.0%
GGAGACTGTGTGTGGTCTCT+TGG + tig0001300:54857-54876 None:intergenic 55.0%
CGCTGCTGTGGATGATCACT+TGG + tig0001300:54911-54930 None:intergenic 55.0%
AATGGTGGTCCACATCAGCG+TGG - tig0001300:54950-54969 Msa1336640:intron 55.0%
GAACCATCTCCACGCTGATG+TGG + tig0001300:54962-54981 None:intergenic 55.0%
GGAACAGGCGTGATCAAGAC+TGG - tig0001300:55002-55021 Msa1336640:intron 55.0%
GCGGAAGAATATGGATGCCC+AGG - tig0001300:55522-55541 Msa1336640:intron 55.0%
AGAATATGGATGCCCAGGGC+TGG - tig0001300:55527-55546 Msa1336640:intron 55.0%
GAATATGGATGCCCAGGGCT+GGG - tig0001300:55528-55547 Msa1336640:intron 55.0%
CGTTATTGGAACCCAGCCCT+GGG + tig0001300:55542-55561 None:intergenic 55.0%
GGCGCTTCTTGGAAAGGATC+AGG - tig0001300:55796-55815 Msa1336640:intron 55.0%
TATGTCCGACACTGGCGAGA+TGG - tig0001300:56859-56878 Msa1336640:CDS 55.0%
CAGTTCCATCTCGCCAGTGT+CGG + tig0001300:56867-56886 None:intergenic 55.0%
GAGTTAAGGAGGACACTGGC+AGG - tig0001300:57800-57819 Msa1336640:intron 55.0%
AAAAGCAGCTGAGGGGCAGT+CGG + tig0001300:58133-58152 None:intergenic 55.0%
CTTGTGGCTGAGCTTGTCCT+AGG - tig0001300:58275-58294 Msa1336640:exon 55.0%
CCCGAAACAATTGTGCACGC+TGG - tig0001300:58456-58475 Msa1336640:five_prime_UTR 55.0%
TGTTGTGTGCGTGCGTGCGT+GGG + tig0001300:53155-53174 Msa1336630:intron 60.0%
TTGTTGTGTGCGTGCGTGCG+TGG + tig0001300:53156-53175 Msa1336630:intron 60.0%
GCGGAAGACGACGTGATTGG+AGG + tig0001300:53430-53449 None:intergenic 60.0%
ACGGCGGAAGACGACGTGAT+TGG + tig0001300:53433-53452 None:intergenic 60.0%
AATCACGTCGTCTTCCGCCG+TGG - tig0001300:53432-53451 Msa1336640:three_prime_UTR 60.0%
TGAAGAAACGGCGGGAACGG+CGG + tig0001300:53492-53511 None:intergenic 60.0%
TCCCGCCGTTTCTTCATCGG+AGG - tig0001300:53496-53515 Msa1336640:three_prime_UTR 60.0%
CCCGATTGTAACTGCTCCGG+TGG - tig0001300:53526-53545 Msa1336640:three_prime_UTR 60.0%
AACGGAGGTGAGCGCAATGG+TGG - tig0001300:53590-53609 Msa1336640:three_prime_UTR 60.0%
GGTGAGCGCAATGGTGGTAC+TGG - tig0001300:53596-53615 Msa1336640:three_prime_UTR 60.0%
CTCCGAAACACCGCCATTGC+CGG + tig0001300:53648-53667 None:intergenic 60.0%
CGGTGTTTCGGAGGTTCAGC+CGG - tig0001300:53655-53674 Msa1336640:three_prime_UTR 60.0%
TTCGGAGGTTCAGCCGGTGA+TGG - tig0001300:53661-53680 Msa1336640:three_prime_UTR 60.0%
CACGAGCGTGCATCCATCAC+CGG + tig0001300:53677-53696 None:intergenic 60.0%
! GAAGGCATGTCCCGGTGAGT+CGG + tig0001300:54271-54290 None:intergenic 60.0%
! GGTCTCTGGGAGACTGTGTG+TGG + tig0001300:54865-54884 None:intergenic 60.0%
GGTCCACATCAGCGTGGAGA+TGG - tig0001300:54956-54975 Msa1336640:intron 60.0%
CCAAAAGGCCGCAATGGTGG+TGG + tig0001300:55133-55152 None:intergenic 60.0%
! CCACCACCATTGCGGCCTTT+TGG - tig0001300:55130-55149 Msa1336640:intron 60.0%
CCACCAAAAGGCCGCAATGG+TGG + tig0001300:55136-55155 None:intergenic 60.0%
! CCACCATTGCGGCCTTTTGG+TGG - tig0001300:55133-55152 Msa1336640:intron 60.0%
TGGCCACCAAAAGGCCGCAA+TGG + tig0001300:55139-55158 None:intergenic 60.0%
!! CGGCCTTTTGGTGGCCACAT+GGG - tig0001300:55142-55161 Msa1336640:intron 60.0%
GGTGGCCACATGGGATTCCA+TGG - tig0001300:55151-55170 Msa1336640:intron 60.0%
GCGTTATTGGAACCCAGCCC+TGG + tig0001300:55543-55562 None:intergenic 60.0%
CGACACTGGCGAGATGGAAC+TGG - tig0001300:56865-56884 Msa1336640:CDS 60.0%
AAAGCAGCTGAGGGGCAGTC+GGG + tig0001300:58132-58151 None:intergenic 60.0%
! ATCTGGGGTCAGCTTCCCAC+CGG - tig0001300:58157-58176 Msa1336640:CDS 60.0%
CCTCTTCCCTCAGAAGCAGC+AGG + tig0001300:58243-58262 None:intergenic 60.0%
! CCTGCTGCTTCTGAGGGAAG+AGG - tig0001300:58240-58259 Msa1336640:CDS 60.0%
CGGCAATGGCGGTGTTTCGG+AGG - tig0001300:53646-53665 Msa1336640:three_prime_UTR 65.0%
!! CGGTGATGGATGCACGCTCG+TGG - tig0001300:53675-53694 Msa1336640:three_prime_UTR 65.0%
GGGGTGCAGACTGCTGTGTG+TGG + tig0001300:54754-54773 None:intergenic 65.0%
!! GCGGCCTTTTGGTGGCCACA+TGG - tig0001300:55141-55160 Msa1336640:intron 65.0%
Chromosome Type Strat End Strand Name
tig0001300 gene 53043 58633 53043 ID=Msa1336640;Name=Msa1336640
tig0001300 mRNA 53043 58633 53043 ID=Msa1336640-mRNA-1;Parent=Msa1336640;Name=Msa1336640-mRNA-1;_AED=0.16;_eAED=0.16;_QI=340|1|1|1|1|1|6|883|522
tig0001300 exon 53043 54225 53043 ID=Msa1336640-mRNA-1:exon:797;Parent=Msa1336640-mRNA-1
tig0001300 exon 54494 54565 54494 ID=Msa1336640-mRNA-1:exon:796;Parent=Msa1336640-mRNA-1
tig0001300 exon 56094 56184 56094 ID=Msa1336640-mRNA-1:exon:795;Parent=Msa1336640-mRNA-1
tig0001300 exon 56278 56431 56278 ID=Msa1336640-mRNA-1:exon:794;Parent=Msa1336640-mRNA-1
tig0001300 exon 56504 57053 56504 ID=Msa1336640-mRNA-1:exon:793;Parent=Msa1336640-mRNA-1
tig0001300 exon 57892 58633 57892 ID=Msa1336640-mRNA-1:exon:792;Parent=Msa1336640-mRNA-1
tig0001300 five_prime_UTR 58294 58633 58294 ID=Msa1336640-mRNA-1:five_prime_utr;Parent=Msa1336640-mRNA-1
tig0001300 CDS 57892 58293 57892 ID=Msa1336640-mRNA-1:cds;Parent=Msa1336640-mRNA-1
tig0001300 CDS 56504 57053 56504 ID=Msa1336640-mRNA-1:cds;Parent=Msa1336640-mRNA-1
tig0001300 CDS 56278 56431 56278 ID=Msa1336640-mRNA-1:cds;Parent=Msa1336640-mRNA-1
tig0001300 CDS 56094 56184 56094 ID=Msa1336640-mRNA-1:cds;Parent=Msa1336640-mRNA-1
tig0001300 CDS 54494 54565 54494 ID=Msa1336640-mRNA-1:cds;Parent=Msa1336640-mRNA-1
tig0001300 CDS 53926 54225 53926 ID=Msa1336640-mRNA-1:cds;Parent=Msa1336640-mRNA-1
tig0001300 three_prime_UTR 53043 53925 53043 ID=Msa1336640-mRNA-1:three_prime_utr;Parent=Msa1336640-mRNA-1
Gene Sequence

>Msa1336640

ATGGAAATGATCGGTAACCATTCCCCTAATCATTCCTCCGATAACCTCCAATCACGTCGTCTTCCGCCGTGGAATCAAGTAGTTCGTGGCGAATCGGAGTCTATCGCCGCCGTTCCCGCCGTTTCTTCATCGGAGGAATCTTTCCCGATTGTAACTGCTCCGGTGGATGATTCTACCTCTGCTGAAGTGATCTCTGATAACGCAGATAACGGAGGTGAGCGCAATGGTGGTACTGGTAAGAGACCTGCTTGGAATAGGTCTTCCGGCAATGGCGGTGTTTCGGAGGTTCAGCCGGTGATGGATGCACGCTCGTGGCCTGCTTTATCTGATTCCGCTCGAGGTTCTACGAAATCGGAGTCGTCGAAGGGTTTGTTAGATGGATCTTCTGTTTCTCCATGGCAGGGTATGGAAAGCACACCTTCTTCCTCTATGCAAAGACAAGTCGGAGATAATGTAAATGTAAACAATATGGCACCAACTCGCCAGAAACCAATCAAACACAACAGTTCAAATGCATCTTCTAATGGGGGCCACACACAGCAGTCTGCACCCCAAGTTTCGATAGCTGCATCGGGATCTCACACCTCTTCTTCCAGAGACCATACACAGTCTCCCAGAGACCATGCACAGTCTCCAAGAGACCACACACAGTCTCCCAGAGACCACACACAGAGAAGTGGATTTGTGCCAAGTGATCATCCACAGCAGCGTAATTCATTTAGACATCGTAATGGTGGTCCACATCAGCGTGGAGATGGTTCTCACCACCATCATAACTATGGGAACAGGCGTGATCAAGACTGGAACAATCGTCGAAATTACAATGGTAGAGACATGCACGTGCCACCAAGAGTTTCTCCAAGAATTATAAGGCCATCTCTGCCTCCTAATTCTGCACCATTCATTCATCCACCACCATTGCGGCCTTTTGGTGGCCACATGGGATTCCATGAACTAGCTGCTCCAGTGGTATTATTTGCAGCTCCACCTCCACCGATAGATTCACTAAGAGGTGTTCCCTTTGTTCCTCCAATGCCTCTTTATTATGCAGGGCCAGACCCTCAGTTGCATAGCAAGATAGTCAACCAGATTGACTACTATTTTAGTAATGAAAATTTAGTCAAAGATATATTCTTGCGGAAGAATATGGATGCCCAGGGCTGGGTTCCAATAACGCTAATTGCTGGCTTCAAAAAAGTCATGGATTTGACTGACAATATTCAGCTTATAATAGATGCAATTCGAACTTCATCTGTGGTTGAAGTGCAGGGAGACAAAATAAGGAGGCAAAATGATTGGGAGAAATGGATCATGCCTTCTCCTGTTCAGTTTCCTAATGTTACAAGTCCTGAAGTGTTAAATCAGGACATGCTAGCAGAGCAAATGCACAATATTGCTCTGGAGACAACTATCTATGATGGTGCAGGAGGACCAGTTGTTCTATCAGATAATTCAGAGCATACACCTGCATTTGGGGATTTGAGCACTCCATTGCAGCTCTCAACTAGTGAAATTACTGGTCAAGTTGACATTCATGGCTCAGATTTCTCTACTTCAAGGAGAAATTAG
Protein sequence

>Msa1336640

MEMIGNHSPNHSSDNLQSRRLPPWNQVVRGESESIAAVPAVSSSEESFPIVTAPVDDSTSAEVISDNADNGGERNGGTGKRPAWNRSSGNGGVSEVQPVMDARSWPALSDSARGSTKSESSKGLLDGSSVSPWQGMESTPSSSMQRQVGDNVNVNNMAPTRQKPIKHNSSNASSNGGHTQQSAPQVSIAASGSHTSSSRDHTQSPRDHAQSPRDHTQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNNRRNYNGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPPLRPFGGHMGFHELAAPVVLFAAPPPPIDSLRGVPFVPPMPLYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTSPEVLNQDMLAEQMHNIALETTIYDGAGGPVVLSDNSEHTPAFGDLSTPLQLSTSEITGQVDIHGSDFSTSRRN*