AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089510 MtrunA17_Chr1g0208171 97.241 145 4 0 1 145 1 145 1.13e-99 282
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089510 AT4G34190.1 56.849 146 60 2 3 145 1 146 3.10e-47 150

Find 59 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTGGATTCATCCAATTA+AGG 0.253614 1_2:+71150481 Msa0089500:intron
AAGAATAGGTAGAGATAATA+AGG 0.255478 1_2:-71152625 Msa0089510:five_prime_UTR
GGTAGAGATAATAAGGAATA+AGG 0.291378 1_2:-71152618 Msa0089510:five_prime_UTR
TGCTCGCATCTTATCGAAAC+TGG 0.316015 1_2:+71151398 Msa0089500:intron
ATTACTGTTGAAATTACTTC+TGG 0.319891 1_2:-71151305 Msa0089510:CDS
GCAGGAACCAAAGTTGGTTT+AGG 0.337277 1_2:+71152344 Msa0089500:intron
ATGGGAACGGTTTGGATGTA+TGG 0.346112 1_2:-71151364 Msa0089510:CDS
TGATCCGGAGCAATCATAAA+AGG 0.355506 1_2:-71151442 Msa0089510:CDS
TTATTCTTGGTGAAAAGAAT+TGG 0.356415 1_2:-71150533 Msa0089510:three_prime_UTR
GGAAATTGAGCAGAGGTTGC+AGG 0.362163 1_2:+71152365 Msa0089500:intron
ACAGTTGCCTTGGCCGTAAC+AGG 0.365155 1_2:-71150709 Msa0089510:CDS
TCAATTTCCTAAACCAACTT+TGG 0.392958 1_2:-71152351 Msa0089510:CDS
GTAAATTCTGTAGTTTCAAA+TGG 0.416774 1_2:-71150603 Msa0089510:three_prime_UTR
GCTAGAGCATCCTTTGCAAC+TGG 0.420563 1_2:-71152323 Msa0089510:CDS
GTTGAAATTACTTCTGGAAA+GGG 0.425412 1_2:-71151299 Msa0089510:CDS
ATCAGTTCTCTGAGGCTGAC+TGG 0.425625 1_2:+71150653 Msa0089500:intron
GTTTGGATGTATGGCTTGGC+CGG 0.431706 1_2:-71151355 Msa0089510:CDS
TCTCTTTCTGTCTCTCTTCG+TGG 0.434411 1_2:-71152526 Msa0089510:intron
AGAGAACTGATTAAATATTC+AGG 0.439616 1_2:-71150641 Msa0089510:exon
ATCCAAACCGTTCCCATCCT+TGG 0.459057 1_2:+71151370 Msa0089500:intron
CACCAAGGATGGGAACGGTT+TGG 0.459933 1_2:-71151372 Msa0089510:CDS
CATCCGTTGTTCAAAAGAAT+AGG 0.464135 1_2:-71152639 Msa0089510:five_prime_UTR
AGAAGTAATTTCAACAGTAA+TGG 0.474215 1_2:+71151307 Msa0089500:intron
GCTCTAGCAGGAACCAAAGT+TGG 0.477360 1_2:+71152338 Msa0089500:intron
CTTGGCCGGGTAGCCATGGT+TGG 0.479318 1_2:-71151341 Msa0089510:CDS
TTGACTTGTCTATAGTGATC+CGG 0.483262 1_2:-71151457 Msa0089510:intron
AATTAGAAAAGTTACTTAGT+GGG 0.486476 1_2:+71152297 Msa0089500:intron
TGCGAGCAAAACACCAAGGA+TGG 0.496748 1_2:-71151383 Msa0089510:CDS
GACACCCACCAGTCCTGTTA+CGG 0.499084 1_2:+71150696 Msa0089500:intron
TGCCTTGGCCGTAACAGGAC+TGG 0.500300 1_2:-71150704 Msa0089510:CDS
TGTTGAAATTACTTCTGGAA+AGG 0.500335 1_2:-71151300 Msa0089510:CDS
TCCACTGCCTACAGTTGCCT+TGG 0.503726 1_2:-71150719 Msa0089510:CDS
CACCAGTCCTGTTACGGCCA+AGG 0.507970 1_2:+71150702 Msa0089500:intron
AACGGTTTGGATGTATGGCT+TGG 0.508500 1_2:-71151359 Msa0089510:CDS
TTTGGATGTATGGCTTGGCC+GGG 0.518757 1_2:-71151354 Msa0089510:CDS
GAAATTGAGCAGAGGTTGCA+GGG 0.522794 1_2:+71152366 Msa0089500:intron
GTTGCAAAGGATGCTCTAGC+AGG 0.542909 1_2:+71152326 Msa0089500:intron
CAAAACCAACCATGGCTACC+CGG 0.549263 1_2:+71151336 Msa0089500:intron
AACTGATTAAATATTCAGGC+TGG 0.550822 1_2:-71150637 Msa0089510:exon
AGAGACAGAAAGAGAAGCAG+AGG 0.554751 1_2:+71152534 Msa0089500:intron
GCCAAGGCAACTGTAGGCAG+TGG 0.574143 1_2:+71150718 Msa0089500:intron
ATTAGAAAAGTTACTTAGTG+GGG 0.581454 1_2:+71152298 Msa0089500:intron
CTTGGCCGTAACAGGACTGG+TGG 0.598603 1_2:-71150701 Msa0089510:CDS
ATGGCTTGGCCGGGTAGCCA+TGG 0.601341 1_2:-71151345 Msa0089510:CDS
TAGTGGGGAACCAGTTGCAA+AGG 0.603632 1_2:+71152313 Msa0089500:intron
TGGTTTAGGAAATTGAGCAG+AGG 0.606409 1_2:+71152358 Msa0089500:intron
TGATGAGTCAGAGATATGAA+TGG 0.612820 1_2:-71152673 Msa0089510:five_prime_UTR
GTTACGGCCAAGGCAACTGT+AGG 0.623177 1_2:+71150712 Msa0089500:intron
GCGAGCAAAACACCAAGGAT+GGG 0.623826 1_2:-71151382 Msa0089510:CDS
GGCCACTGCAAAACCAACCA+TGG 0.623933 1_2:+71151328 Msa0089500:intron
TTCTGGAAAGGGACTCCTAG+AGG 0.632552 1_2:-71151288 Msa0089510:intron
GAACAACGGATGATGAAACA+TGG 0.633626 1_2:+71152650 Msa0089500:intron
ATAACTTACTTCGTCAACCA+TGG 0.636574 1_2:-71152575 Msa0089510:exon
TTGAGCTTGAGCAAGTGCCA+TGG 0.644960 1_2:+71152558 Msa0089500:intron
CAAAACACCAAGGATGGGAA+CGG 0.652602 1_2:-71151377 Msa0089510:CDS
TTGGCCGTAACAGGACTGGT+GGG 0.657190 1_2:-71150700 Msa0089510:CDS
AATATTTAATCAGTTCTCTG+AGG 0.658496 1_2:+71150645 Msa0089500:intron
CTGACTCATCAACGCTAACG+TGG 0.669926 1_2:+71152685 Msa0089500:intron
AAGATGCGAGCAAAACACCA+AGG 0.726429 1_2:-71151387 Msa0089510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTAATTTTTTAA+AGG - chr1_2:71150885-71150904 Msa0089510:intron 0.0%
!!! TATTATTATTAATTTTTTAA+AGG - chr1_2:71150885-71150904 Msa0089510:intron 0.0%
!! TCTCAAAAAAAAAAAAAAAA+TGG + chr1_2:71150673-71150692 Msa0089500:intron 10.0%
!! ATAAAAAATAAATGATCTAT+AGG - chr1_2:71151096-71151115 Msa0089510:intron 10.0%
!! TCTCAAAAAAAAAAAAAAAA+TGG + chr1_2:71150673-71150692 Msa0089500:intron 10.0%
!! ATAAAAAATAAATGATCTAT+AGG - chr1_2:71151096-71151115 Msa0089510:intron 10.0%
!! AAAAAAAAAAAAATGGAACA+GGG + chr1_2:71150666-71150685 Msa0089500:intron 15.0%
!! AAAAAAAAAAAAAATGGAAC+AGG + chr1_2:71150667-71150686 Msa0089500:intron 15.0%
!!! TTTTCTTGTAATATTATTCT+TGG - chr1_2:71152601-71152620 Msa0089510:five_prime_UTR 15.0%
!!! CATTAATCATGTTAAATTTT+TGG - chr1_2:71152640-71152659 Msa0089510:five_prime_UTR 15.0%
!! AAAAAAAAAAAAATGGAACA+GGG + chr1_2:71150666-71150685 Msa0089500:intron 15.0%
!! AAAAAAAAAAAAAATGGAAC+AGG + chr1_2:71150667-71150686 Msa0089500:intron 15.0%
!!! TTTTCTTGTAATATTATTCT+TGG - chr1_2:71152601-71152620 Msa0089510:five_prime_UTR 15.0%
!!! CATTAATCATGTTAAATTTT+TGG - chr1_2:71152640-71152659 Msa0089510:five_prime_UTR 15.0%
!! AAAAAAAAAAAATGGAACAG+GGG + chr1_2:71150665-71150684 Msa0089500:intron 20.0%
!! AATTAGAAAAGTTACTTAGT+GGG + chr1_2:71150853-71150872 Msa0089500:intron 20.0%
!! TCTAAAAGCCAATATAATAT+CGG + chr1_2:71150964-71150983 Msa0089500:intron 20.0%
!!! AATTTCATTTTGTAGTATGA+GGG - chr1_2:71150983-71151002 Msa0089510:intron 20.0%
!!! AATTAAAATGAGTGTCATTT+AGG + chr1_2:71151414-71151433 Msa0089500:intron 20.0%
!!! AAATGACACTCATTTTAATT+CGG - chr1_2:71151414-71151433 Msa0089510:CDS 20.0%
!! AAAAAAAAAAAATGGAACAG+GGG + chr1_2:71150665-71150684 Msa0089500:intron 20.0%
!! AATTAGAAAAGTTACTTAGT+GGG + chr1_2:71150853-71150872 Msa0089500:intron 20.0%
!! TCTAAAAGCCAATATAATAT+CGG + chr1_2:71150964-71150983 Msa0089500:intron 20.0%
!!! AATTTCATTTTGTAGTATGA+GGG - chr1_2:71150983-71151002 Msa0089510:intron 20.0%
!!! AATTAAAATGAGTGTCATTT+AGG + chr1_2:71151414-71151433 Msa0089500:intron 20.0%
!!! AAATGACACTCATTTTAATT+CGG - chr1_2:71151414-71151433 Msa0089510:CDS 20.0%
! AAGAATAGGTAGAGATAATA+AGG - chr1_2:71150522-71150541 Msa0089510:three_prime_UTR 25.0%
! ATTAGAAAAGTTACTTAGTG+GGG + chr1_2:71150852-71150871 Msa0089500:intron 25.0%
! GAATTAGAAAAGTTACTTAG+TGG + chr1_2:71150854-71150873 Msa0089500:intron 25.0%
!! GAATTTCATTTTGTAGTATG+AGG - chr1_2:71150982-71151001 Msa0089510:intron 25.0%
!! GTAATTAGTAGTACTACTTT+TGG - chr1_2:71151036-71151055 Msa0089510:intron 25.0%
!!! AATGACACTCATTTTAATTC+GGG - chr1_2:71151415-71151434 Msa0089510:CDS 25.0%
! TATTATACTATAGCATCGTT+TGG - chr1_2:71151454-71151473 Msa0089510:intron 25.0%
! TAATCTTATACAATAAGACG+CGG - chr1_2:71151486-71151505 Msa0089510:intron 25.0%
!! AGATTAACTTCATAGTCTTA+GGG + chr1_2:71151562-71151581 Msa0089500:intron 25.0%
! TAGATTAACTTCATAGTCTT+AGG + chr1_2:71151563-71151582 Msa0089500:intron 25.0%
! TTGTTGAAATAAGATTCGTT+AGG - chr1_2:71151653-71151672 Msa0089510:intron 25.0%
! AGAAGTAATTTCAACAGTAA+TGG + chr1_2:71151843-71151862 Msa0089500:intron 25.0%
! ATTACTGTTGAAATTACTTC+TGG - chr1_2:71151842-71151861 Msa0089510:intron 25.0%
!! TCCATCAAATGATTGATAAT+TGG - chr1_2:71151983-71152002 Msa0089510:intron 25.0%
!!! ACATTTGAGTTTTGACAAAT+GGG + chr1_2:71152034-71152053 Msa0089500:intron 25.0%
!!! AACATTTGAGTTTTGACAAA+TGG + chr1_2:71152035-71152054 Msa0089500:intron 25.0%
! AAACGTAATAAAGTTCGTTA+CGG + chr1_2:71152281-71152300 Msa0089500:intron 25.0%
! AATATTTAATCAGTTCTCTG+AGG + chr1_2:71152505-71152524 Msa0089500:intron 25.0%
! AGAGAACTGATTAAATATTC+AGG - chr1_2:71152506-71152525 Msa0089510:intron 25.0%
! GTAAATTCTGTAGTTTCAAA+TGG - chr1_2:71152544-71152563 Msa0089510:CDS 25.0%
! TTATTCTTGGTGAAAAGAAT+TGG - chr1_2:71152614-71152633 Msa0089510:five_prime_UTR 25.0%
!!! AAATTTTTGGAAGCCTTAAT+TGG - chr1_2:71152653-71152672 Msa0089510:five_prime_UTR 25.0%
!!! ACAAAAAATAAGCATTGACT+TGG + chr1_2:71152685-71152704 Msa0089500:intron 25.0%
! AAGAATAGGTAGAGATAATA+AGG - chr1_2:71150522-71150541 Msa0089510:three_prime_UTR 25.0%
! ATTAGAAAAGTTACTTAGTG+GGG + chr1_2:71150852-71150871 Msa0089500:intron 25.0%
! GAATTAGAAAAGTTACTTAG+TGG + chr1_2:71150854-71150873 Msa0089500:intron 25.0%
!! GAATTTCATTTTGTAGTATG+AGG - chr1_2:71150982-71151001 Msa0089510:intron 25.0%
!! GTAATTAGTAGTACTACTTT+TGG - chr1_2:71151036-71151055 Msa0089510:intron 25.0%
!!! AATGACACTCATTTTAATTC+GGG - chr1_2:71151415-71151434 Msa0089510:CDS 25.0%
! TATTATACTATAGCATCGTT+TGG - chr1_2:71151454-71151473 Msa0089510:intron 25.0%
! TAATCTTATACAATAAGACG+CGG - chr1_2:71151486-71151505 Msa0089510:intron 25.0%
!! AGATTAACTTCATAGTCTTA+GGG + chr1_2:71151562-71151581 Msa0089500:intron 25.0%
! TAGATTAACTTCATAGTCTT+AGG + chr1_2:71151563-71151582 Msa0089500:intron 25.0%
! TTGTTGAAATAAGATTCGTT+AGG - chr1_2:71151653-71151672 Msa0089510:intron 25.0%
! AGAAGTAATTTCAACAGTAA+TGG + chr1_2:71151843-71151862 Msa0089500:intron 25.0%
! ATTACTGTTGAAATTACTTC+TGG - chr1_2:71151842-71151861 Msa0089510:intron 25.0%
!! TCCATCAAATGATTGATAAT+TGG - chr1_2:71151983-71152002 Msa0089510:intron 25.0%
!!! ACATTTGAGTTTTGACAAAT+GGG + chr1_2:71152034-71152053 Msa0089500:intron 25.0%
!!! AACATTTGAGTTTTGACAAA+TGG + chr1_2:71152035-71152054 Msa0089500:intron 25.0%
! AAACGTAATAAAGTTCGTTA+CGG + chr1_2:71152281-71152300 Msa0089500:intron 25.0%
! AATATTTAATCAGTTCTCTG+AGG + chr1_2:71152505-71152524 Msa0089500:intron 25.0%
! AGAGAACTGATTAAATATTC+AGG - chr1_2:71152506-71152525 Msa0089510:intron 25.0%
! GTAAATTCTGTAGTTTCAAA+TGG - chr1_2:71152544-71152563 Msa0089510:CDS 25.0%
! TTATTCTTGGTGAAAAGAAT+TGG - chr1_2:71152614-71152633 Msa0089510:five_prime_UTR 25.0%
!!! AAATTTTTGGAAGCCTTAAT+TGG - chr1_2:71152653-71152672 Msa0089510:five_prime_UTR 25.0%
!!! ACAAAAAATAAGCATTGACT+TGG + chr1_2:71152685-71152704 Msa0089500:intron 25.0%
! CTACCTATTCTTTTGAACAA+CGG + chr1_2:71150514-71150533 Msa0089500:intron 30.0%
GGTAGAGATAATAAGGAATA+AGG - chr1_2:71150529-71150548 Msa0089510:three_prime_UTR 30.0%
ATTGAGTGCTACAATAGAAA+TGG + chr1_2:71150709-71150728 Msa0089500:intron 30.0%
TCAATTTCCTAAACCAACTT+TGG - chr1_2:71150796-71150815 Msa0089510:intron 30.0%
GTAGACTACCGATATTATAT+TGG - chr1_2:71150953-71150972 Msa0089510:intron 30.0%
GTACTACTAATTACAAGCAA+AGG + chr1_2:71151030-71151049 Msa0089500:intron 30.0%
!! TGCAGATTTTGCTATAGAAT+GGG + chr1_2:71151127-71151146 Msa0089500:intron 30.0%
!! ATGCAGATTTTGCTATAGAA+TGG + chr1_2:71151128-71151147 Msa0089500:intron 30.0%
!!! ATGACTGAGTTCTTTGTTTT+TGG - chr1_2:71151328-71151347 Msa0089510:CDS 30.0%
GCAATAATATTGAATAGAGG+AGG + chr1_2:71151369-71151388 Msa0089500:intron 30.0%
CAGGCAATAATATTGAATAG+AGG + chr1_2:71151372-71151391 Msa0089500:intron 30.0%
! AATTCGGGTTTATTCACATT+TGG - chr1_2:71151430-71151449 Msa0089510:CDS 30.0%
! GATTAACTTCATAGTCTTAG+GGG + chr1_2:71151561-71151580 Msa0089500:intron 30.0%
! TGTTGAAATTACTTCTGGAA+AGG - chr1_2:71151847-71151866 Msa0089510:intron 30.0%
! GTTGAAATTACTTCTGGAAA+GGG - chr1_2:71151848-71151867 Msa0089510:intron 30.0%
GTAACTCAAAGTTTACGTTA+TGG + chr1_2:71151897-71151916 Msa0089500:intron 30.0%
GCCAATTATCAATCATTTGA+TGG + chr1_2:71151987-71152006 Msa0089500:intron 30.0%
!! ATTTGAGTTTTGACAAATGG+GGG + chr1_2:71152032-71152051 Msa0089500:intron 30.0%
!! CATTTGAGTTTTGACAAATG+GGG + chr1_2:71152033-71152052 Msa0089500:intron 30.0%
CAAAACTCAAATGTTTGCTT+TGG - chr1_2:71152040-71152059 Msa0089510:intron 30.0%
!!! TTGGTATTTTAGCTGCAATA+TGG - chr1_2:71152059-71152078 Msa0089510:intron 30.0%
CACTATAAAGTAAAGGAGAA+AGG + chr1_2:71152092-71152111 Msa0089500:intron 30.0%
CCATACACACTATAAAGTAA+AGG + chr1_2:71152099-71152118 Msa0089500:intron 30.0%
CCTTTACTTTATAGTGTGTA+TGG - chr1_2:71152096-71152115 Msa0089510:intron 30.0%
! GATCTTTTAAGCTATTGAGT+TGG - chr1_2:71152155-71152174 Msa0089510:intron 30.0%
!! ACTTTGATTTTGCAGAACTT+TGG - chr1_2:71152396-71152415 Msa0089510:CDS 30.0%
AACTGATTAAATATTCAGGC+TGG - chr1_2:71152510-71152529 Msa0089510:intron 30.0%
! CTACCTATTCTTTTGAACAA+CGG + chr1_2:71150514-71150533 Msa0089500:intron 30.0%
GGTAGAGATAATAAGGAATA+AGG - chr1_2:71150529-71150548 Msa0089510:three_prime_UTR 30.0%
ATTGAGTGCTACAATAGAAA+TGG + chr1_2:71150709-71150728 Msa0089500:intron 30.0%
TCAATTTCCTAAACCAACTT+TGG - chr1_2:71150796-71150815 Msa0089510:intron 30.0%
GTAGACTACCGATATTATAT+TGG - chr1_2:71150953-71150972 Msa0089510:intron 30.0%
GTACTACTAATTACAAGCAA+AGG + chr1_2:71151030-71151049 Msa0089500:intron 30.0%
!! TGCAGATTTTGCTATAGAAT+GGG + chr1_2:71151127-71151146 Msa0089500:intron 30.0%
!! ATGCAGATTTTGCTATAGAA+TGG + chr1_2:71151128-71151147 Msa0089500:intron 30.0%
!!! ATGACTGAGTTCTTTGTTTT+TGG - chr1_2:71151328-71151347 Msa0089510:CDS 30.0%
GCAATAATATTGAATAGAGG+AGG + chr1_2:71151369-71151388 Msa0089500:intron 30.0%
CAGGCAATAATATTGAATAG+AGG + chr1_2:71151372-71151391 Msa0089500:intron 30.0%
! AATTCGGGTTTATTCACATT+TGG - chr1_2:71151430-71151449 Msa0089510:CDS 30.0%
! GATTAACTTCATAGTCTTAG+GGG + chr1_2:71151561-71151580 Msa0089500:intron 30.0%
! TGTTGAAATTACTTCTGGAA+AGG - chr1_2:71151847-71151866 Msa0089510:intron 30.0%
! GTTGAAATTACTTCTGGAAA+GGG - chr1_2:71151848-71151867 Msa0089510:intron 30.0%
GTAACTCAAAGTTTACGTTA+TGG + chr1_2:71151897-71151916 Msa0089500:intron 30.0%
GCCAATTATCAATCATTTGA+TGG + chr1_2:71151987-71152006 Msa0089500:intron 30.0%
!! ATTTGAGTTTTGACAAATGG+GGG + chr1_2:71152032-71152051 Msa0089500:intron 30.0%
!! CATTTGAGTTTTGACAAATG+GGG + chr1_2:71152033-71152052 Msa0089500:intron 30.0%
CAAAACTCAAATGTTTGCTT+TGG - chr1_2:71152040-71152059 Msa0089510:intron 30.0%
!!! TTGGTATTTTAGCTGCAATA+TGG - chr1_2:71152059-71152078 Msa0089510:intron 30.0%
CACTATAAAGTAAAGGAGAA+AGG + chr1_2:71152092-71152111 Msa0089500:intron 30.0%
CCATACACACTATAAAGTAA+AGG + chr1_2:71152099-71152118 Msa0089500:intron 30.0%
CCTTTACTTTATAGTGTGTA+TGG - chr1_2:71152096-71152115 Msa0089510:intron 30.0%
! GATCTTTTAAGCTATTGAGT+TGG - chr1_2:71152155-71152174 Msa0089510:intron 30.0%
!! ACTTTGATTTTGCAGAACTT+TGG - chr1_2:71152396-71152415 Msa0089510:CDS 30.0%
AACTGATTAAATATTCAGGC+TGG - chr1_2:71152510-71152529 Msa0089510:intron 30.0%
TGATGAGTCAGAGATATGAA+TGG - chr1_2:71150474-71150493 Msa0089510:three_prime_UTR 35.0%
CATCCGTTGTTCAAAAGAAT+AGG - chr1_2:71150508-71150527 Msa0089510:three_prime_UTR 35.0%
ATAACTTACTTCGTCAACCA+TGG - chr1_2:71150572-71150591 Msa0089510:three_prime_UTR 35.0%
CTACAATAGAAATGGAACAG+GGG + chr1_2:71150701-71150720 Msa0089500:intron 35.0%
GCTACAATAGAAATGGAACA+GGG + chr1_2:71150702-71150721 Msa0089500:intron 35.0%
TGCTACAATAGAAATGGAAC+AGG + chr1_2:71150703-71150722 Msa0089500:intron 35.0%
! TTTGAAGCAACTGTGAGAAA+TGG - chr1_2:71151240-71151259 Msa0089510:intron 35.0%
! ATTATTGCCTGCTTAGTTCT+TGG - chr1_2:71151381-71151400 Msa0089510:CDS 35.0%
GTTAATCTATGATGCCAGTT+AGG - chr1_2:71151574-71151593 Msa0089510:intron 35.0%
GAAAAGCTATGATGCTAGTT+AGG - chr1_2:71151605-71151624 Msa0089510:intron 35.0%
!! TTGACTTGTCTATAGTGATC+CGG - chr1_2:71151690-71151709 Msa0089510:intron 35.0%
! ACTTCCTTTTATGATTGCTC+CGG + chr1_2:71151712-71151731 Msa0089500:intron 35.0%
!! GAGTTGGTGTAGTGATATAT+AGG - chr1_2:71152171-71152190 Msa0089510:intron 35.0%
GACTTGGATTCATCCAATTA+AGG + chr1_2:71152669-71152688 Msa0089500:intron 35.0%
TGATGAGTCAGAGATATGAA+TGG - chr1_2:71150474-71150493 Msa0089510:three_prime_UTR 35.0%
CATCCGTTGTTCAAAAGAAT+AGG - chr1_2:71150508-71150527 Msa0089510:three_prime_UTR 35.0%
ATAACTTACTTCGTCAACCA+TGG - chr1_2:71150572-71150591 Msa0089510:three_prime_UTR 35.0%
CTACAATAGAAATGGAACAG+GGG + chr1_2:71150701-71150720 Msa0089500:intron 35.0%
GCTACAATAGAAATGGAACA+GGG + chr1_2:71150702-71150721 Msa0089500:intron 35.0%
TGCTACAATAGAAATGGAAC+AGG + chr1_2:71150703-71150722 Msa0089500:intron 35.0%
! TTTGAAGCAACTGTGAGAAA+TGG - chr1_2:71151240-71151259 Msa0089510:intron 35.0%
! ATTATTGCCTGCTTAGTTCT+TGG - chr1_2:71151381-71151400 Msa0089510:CDS 35.0%
GTTAATCTATGATGCCAGTT+AGG - chr1_2:71151574-71151593 Msa0089510:intron 35.0%
GAAAAGCTATGATGCTAGTT+AGG - chr1_2:71151605-71151624 Msa0089510:intron 35.0%
!! TTGACTTGTCTATAGTGATC+CGG - chr1_2:71151690-71151709 Msa0089510:intron 35.0%
! ACTTCCTTTTATGATTGCTC+CGG + chr1_2:71151712-71151731 Msa0089500:intron 35.0%
!! GAGTTGGTGTAGTGATATAT+AGG - chr1_2:71152171-71152190 Msa0089510:intron 35.0%
GACTTGGATTCATCCAATTA+AGG + chr1_2:71152669-71152688 Msa0089500:intron 35.0%
GAACAACGGATGATGAAACA+TGG + chr1_2:71150500-71150519 Msa0089500:intron 40.0%
AACAGGGGATTGAGAGTAAT+GGG + chr1_2:71150650-71150669 Msa0089500:intron 40.0%
TGGTTTAGGAAATTGAGCAG+AGG + chr1_2:71150792-71150811 Msa0089500:intron 40.0%
ATTGTTGCCAAGAACTAAGC+AGG + chr1_2:71151391-71151410 Msa0089500:intron 40.0%
! CTTTTCTTGCAATGCCTAAC+TGG + chr1_2:71151591-71151610 Msa0089500:intron 40.0%
CTATGATGCTAGTTAGGCTT+CGG - chr1_2:71151611-71151630 Msa0089510:intron 40.0%
TATGATGCTAGTTAGGCTTC+GGG - chr1_2:71151612-71151631 Msa0089510:intron 40.0%
TGATCCGGAGCAATCATAAA+AGG - chr1_2:71151705-71151724 Msa0089510:intron 40.0%
AAGAGAGGTTGAGATGAGTA+AGG + chr1_2:71152317-71152336 Msa0089500:intron 40.0%
GCTAAACTGAGTGATAAGAG+AGG + chr1_2:71152332-71152351 Msa0089500:intron 40.0%
GAACAACGGATGATGAAACA+TGG + chr1_2:71150500-71150519 Msa0089500:intron 40.0%
AACAGGGGATTGAGAGTAAT+GGG + chr1_2:71150650-71150669 Msa0089500:intron 40.0%
TGGTTTAGGAAATTGAGCAG+AGG + chr1_2:71150792-71150811 Msa0089500:intron 40.0%
ATTGTTGCCAAGAACTAAGC+AGG + chr1_2:71151391-71151410 Msa0089500:intron 40.0%
! CTTTTCTTGCAATGCCTAAC+TGG + chr1_2:71151591-71151610 Msa0089500:intron 40.0%
CTATGATGCTAGTTAGGCTT+CGG - chr1_2:71151611-71151630 Msa0089510:intron 40.0%
TATGATGCTAGTTAGGCTTC+GGG - chr1_2:71151612-71151631 Msa0089510:intron 40.0%
TGATCCGGAGCAATCATAAA+AGG - chr1_2:71151705-71151724 Msa0089510:intron 40.0%
AAGAGAGGTTGAGATGAGTA+AGG + chr1_2:71152317-71152336 Msa0089500:intron 40.0%
GCTAAACTGAGTGATAAGAG+AGG + chr1_2:71152332-71152351 Msa0089500:intron 40.0%
AGAGACAGAAAGAGAAGCAG+AGG + chr1_2:71150616-71150635 Msa0089500:intron 45.0%
TCTCTTTCTGTCTCTCTTCG+TGG - chr1_2:71150621-71150640 Msa0089510:three_prime_UTR 45.0%
GAACAGGGGATTGAGAGTAA+TGG + chr1_2:71150651-71150670 Msa0089500:intron 45.0%
GAAATTGAGCAGAGGTTGCA+GGG + chr1_2:71150784-71150803 Msa0089500:intron 45.0%
! GCAGGAACCAAAGTTGGTTT+AGG + chr1_2:71150806-71150825 Msa0089500:intron 45.0%
GAAGCAACTGTGAGAAATGG+TGG - chr1_2:71151243-71151262 Msa0089510:intron 45.0%
ATGATGCTAGTTAGGCTTCG+GGG - chr1_2:71151613-71151632 Msa0089510:intron 45.0%
TGCTCGCATCTTATCGAAAC+TGG + chr1_2:71151752-71151771 Msa0089500:intron 45.0%
AAGATGCGAGCAAAACACCA+AGG - chr1_2:71151760-71151779 Msa0089510:intron 45.0%
CAAAACACCAAGGATGGGAA+CGG - chr1_2:71151770-71151789 Msa0089510:intron 45.0%
! ATGGGAACGGTTTGGATGTA+TGG - chr1_2:71151783-71151802 Msa0089510:intron 45.0%
! AACGGTTTGGATGTATGGCT+TGG - chr1_2:71151788-71151807 Msa0089510:intron 45.0%
TGGTGCGCAATATTACCTCT+AGG + chr1_2:71151877-71151896 Msa0089500:intron 45.0%
CGTTGAAACTTGCACTCACT+TGG + chr1_2:71152250-71152269 Msa0089500:intron 45.0%
AGAGACAGAAAGAGAAGCAG+AGG + chr1_2:71150616-71150635 Msa0089500:intron 45.0%
TCTCTTTCTGTCTCTCTTCG+TGG - chr1_2:71150621-71150640 Msa0089510:three_prime_UTR 45.0%
GAACAGGGGATTGAGAGTAA+TGG + chr1_2:71150651-71150670 Msa0089500:intron 45.0%
GAAATTGAGCAGAGGTTGCA+GGG + chr1_2:71150784-71150803 Msa0089500:intron 45.0%
! GCAGGAACCAAAGTTGGTTT+AGG + chr1_2:71150806-71150825 Msa0089500:intron 45.0%
GAAGCAACTGTGAGAAATGG+TGG - chr1_2:71151243-71151262 Msa0089510:intron 45.0%
ATGATGCTAGTTAGGCTTCG+GGG - chr1_2:71151613-71151632 Msa0089510:intron 45.0%
TGCTCGCATCTTATCGAAAC+TGG + chr1_2:71151752-71151771 Msa0089500:intron 45.0%
AAGATGCGAGCAAAACACCA+AGG - chr1_2:71151760-71151779 Msa0089510:intron 45.0%
CAAAACACCAAGGATGGGAA+CGG - chr1_2:71151770-71151789 Msa0089510:intron 45.0%
! ATGGGAACGGTTTGGATGTA+TGG - chr1_2:71151783-71151802 Msa0089510:intron 45.0%
! AACGGTTTGGATGTATGGCT+TGG - chr1_2:71151788-71151807 Msa0089510:intron 45.0%
TGGTGCGCAATATTACCTCT+AGG + chr1_2:71151877-71151896 Msa0089500:intron 45.0%
CGTTGAAACTTGCACTCACT+TGG + chr1_2:71152250-71152269 Msa0089500:intron 45.0%
CTGACTCATCAACGCTAACG+TGG + chr1_2:71150465-71150484 Msa0089500:intron 50.0%
TTGAGCTTGAGCAAGTGCCA+TGG + chr1_2:71150592-71150611 Msa0089500:intron 50.0%
GGAAATTGAGCAGAGGTTGC+AGG + chr1_2:71150785-71150804 Msa0089500:intron 50.0%
GCTCTAGCAGGAACCAAAGT+TGG + chr1_2:71150812-71150831 Msa0089500:intron 50.0%
GTTGCAAAGGATGCTCTAGC+AGG + chr1_2:71150824-71150843 Msa0089500:intron 50.0%
! GCTAGAGCATCCTTTGCAAC+TGG - chr1_2:71150824-71150843 Msa0089510:intron 50.0%
TAGTGGGGAACCAGTTGCAA+AGG + chr1_2:71150837-71150856 Msa0089500:intron 50.0%
GCTCACAAGCTTCACTTGCT+CGG + chr1_2:71151213-71151232 Msa0089500:intron 50.0%
TGCGAGCAAAACACCAAGGA+TGG - chr1_2:71151764-71151783 Msa0089510:intron 50.0%
GCGAGCAAAACACCAAGGAT+GGG - chr1_2:71151765-71151784 Msa0089510:intron 50.0%
ATCCAAACCGTTCCCATCCT+TGG + chr1_2:71151780-71151799 Msa0089500:intron 50.0%
! GTTTGGATGTATGGCTTGGC+CGG - chr1_2:71151792-71151811 Msa0089510:intron 50.0%
! TTTGGATGTATGGCTTGGCC+GGG - chr1_2:71151793-71151812 Msa0089510:intron 50.0%
CAAAACCAACCATGGCTACC+CGG + chr1_2:71151814-71151833 Msa0089500:intron 50.0%
!!! AGCCATGGTTGGTTTTGCAG+TGG - chr1_2:71151817-71151836 Msa0089510:intron 50.0%
! TTCTGGAAAGGGACTCCTAG+AGG - chr1_2:71151859-71151878 Msa0089510:intron 50.0%
!! ATCAGTTCTCTGAGGCTGAC+TGG + chr1_2:71152497-71152516 Msa0089500:intron 50.0%
CTGACTCATCAACGCTAACG+TGG + chr1_2:71150465-71150484 Msa0089500:intron 50.0%
TTGAGCTTGAGCAAGTGCCA+TGG + chr1_2:71150592-71150611 Msa0089500:intron 50.0%
GGAAATTGAGCAGAGGTTGC+AGG + chr1_2:71150785-71150804 Msa0089500:intron 50.0%
GCTCTAGCAGGAACCAAAGT+TGG + chr1_2:71150812-71150831 Msa0089500:intron 50.0%
GTTGCAAAGGATGCTCTAGC+AGG + chr1_2:71150824-71150843 Msa0089500:intron 50.0%
! GCTAGAGCATCCTTTGCAAC+TGG - chr1_2:71150824-71150843 Msa0089510:intron 50.0%
TAGTGGGGAACCAGTTGCAA+AGG + chr1_2:71150837-71150856 Msa0089500:intron 50.0%
GCTCACAAGCTTCACTTGCT+CGG + chr1_2:71151213-71151232 Msa0089500:intron 50.0%
TGCGAGCAAAACACCAAGGA+TGG - chr1_2:71151764-71151783 Msa0089510:intron 50.0%
GCGAGCAAAACACCAAGGAT+GGG - chr1_2:71151765-71151784 Msa0089510:intron 50.0%
ATCCAAACCGTTCCCATCCT+TGG + chr1_2:71151780-71151799 Msa0089500:intron 50.0%
! GTTTGGATGTATGGCTTGGC+CGG - chr1_2:71151792-71151811 Msa0089510:intron 50.0%
! TTTGGATGTATGGCTTGGCC+GGG - chr1_2:71151793-71151812 Msa0089510:intron 50.0%
CAAAACCAACCATGGCTACC+CGG + chr1_2:71151814-71151833 Msa0089500:intron 50.0%
!!! AGCCATGGTTGGTTTTGCAG+TGG - chr1_2:71151817-71151836 Msa0089510:intron 50.0%
! TTCTGGAAAGGGACTCCTAG+AGG - chr1_2:71151859-71151878 Msa0089510:intron 50.0%
!! ATCAGTTCTCTGAGGCTGAC+TGG + chr1_2:71152497-71152516 Msa0089500:intron 50.0%
TGCTAGTTAGGCTTCGGGGA+AGG - chr1_2:71151617-71151636 Msa0089510:intron 55.0%
TAGTTAGGCTTCGGGGAAGG+TGG - chr1_2:71151620-71151639 Msa0089510:intron 55.0%
CACCAAGGATGGGAACGGTT+TGG - chr1_2:71151775-71151794 Msa0089510:intron 55.0%
GGCCACTGCAAAACCAACCA+TGG + chr1_2:71151822-71151841 Msa0089500:intron 55.0%
TCCACTGCCTACAGTTGCCT+TGG - chr1_2:71152428-71152447 Msa0089510:intron 55.0%
GTTACGGCCAAGGCAACTGT+AGG + chr1_2:71152438-71152457 Msa0089500:intron 55.0%
ACAGTTGCCTTGGCCGTAAC+AGG - chr1_2:71152438-71152457 Msa0089510:intron 55.0%
! TTGGCCGTAACAGGACTGGT+GGG - chr1_2:71152447-71152466 Msa0089510:intron 55.0%
GACACCCACCAGTCCTGTTA+CGG + chr1_2:71152454-71152473 Msa0089500:intron 55.0%
TGCTAGTTAGGCTTCGGGGA+AGG - chr1_2:71151617-71151636 Msa0089510:intron 55.0%
TAGTTAGGCTTCGGGGAAGG+TGG - chr1_2:71151620-71151639 Msa0089510:intron 55.0%
CACCAAGGATGGGAACGGTT+TGG - chr1_2:71151775-71151794 Msa0089510:intron 55.0%
GGCCACTGCAAAACCAACCA+TGG + chr1_2:71151822-71151841 Msa0089500:intron 55.0%
TCCACTGCCTACAGTTGCCT+TGG - chr1_2:71152428-71152447 Msa0089510:intron 55.0%
GTTACGGCCAAGGCAACTGT+AGG + chr1_2:71152438-71152457 Msa0089500:intron 55.0%
ACAGTTGCCTTGGCCGTAAC+AGG - chr1_2:71152438-71152457 Msa0089510:intron 55.0%
! TTGGCCGTAACAGGACTGGT+GGG - chr1_2:71152447-71152466 Msa0089510:intron 55.0%
GACACCCACCAGTCCTGTTA+CGG + chr1_2:71152454-71152473 Msa0089500:intron 55.0%
GCCAAGGCAACTGTAGGCAG+TGG + chr1_2:71152432-71152451 Msa0089500:intron 60.0%
TGCCTTGGCCGTAACAGGAC+TGG - chr1_2:71152443-71152462 Msa0089510:intron 60.0%
CACCAGTCCTGTTACGGCCA+AGG + chr1_2:71152448-71152467 Msa0089500:intron 60.0%
CTTGGCCGTAACAGGACTGG+TGG - chr1_2:71152446-71152465 Msa0089510:intron 60.0%
GCCAAGGCAACTGTAGGCAG+TGG + chr1_2:71152432-71152451 Msa0089500:intron 60.0%
TGCCTTGGCCGTAACAGGAC+TGG - chr1_2:71152443-71152462 Msa0089510:intron 60.0%
CACCAGTCCTGTTACGGCCA+AGG + chr1_2:71152448-71152467 Msa0089500:intron 60.0%
CTTGGCCGTAACAGGACTGG+TGG - chr1_2:71152446-71152465 Msa0089510:intron 60.0%
! ATGGCTTGGCCGGGTAGCCA+TGG - chr1_2:71151802-71151821 Msa0089510:intron 65.0%
CTTGGCCGGGTAGCCATGGT+TGG - chr1_2:71151806-71151825 Msa0089510:intron 65.0%
! ATGGCTTGGCCGGGTAGCCA+TGG - chr1_2:71151802-71151821 Msa0089510:intron 65.0%
CTTGGCCGGGTAGCCATGGT+TGG - chr1_2:71151806-71151825 Msa0089510:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 71150461 71152708 71150461 ID=Msa0089510;Name=Msa0089510
chr1_2 mRNA 71150461 71152708 71150461 ID=Msa0089510-mRNA-1;Parent=Msa0089510;Name=Msa0089510-mRNA-1;_AED=0.27;_eAED=0.27;_QI=130|1|1|1|0.33|0.25|4|193|145
chr1_2 exon 71150461 71150758 71150461 ID=Msa0089510-mRNA-1:exon:24512;Parent=Msa0089510-mRNA-1
chr1_2 exon 71151289 71151464 71151289 ID=Msa0089510-mRNA-1:exon:24511;Parent=Msa0089510-mRNA-1
chr1_2 exon 71152312 71152416 71152312 ID=Msa0089510-mRNA-1:exon:24510;Parent=Msa0089510-mRNA-1
chr1_2 exon 71152527 71152708 71152527 ID=Msa0089510-mRNA-1:exon:24509;Parent=Msa0089510-mRNA-1
chr1_2 five_prime_UTR 71152579 71152708 71152579 ID=Msa0089510-mRNA-1:five_prime_utr;Parent=Msa0089510-mRNA-1
chr1_2 CDS 71152527 71152578 71152527 ID=Msa0089510-mRNA-1:cds;Parent=Msa0089510-mRNA-1
chr1_2 CDS 71152312 71152416 71152312 ID=Msa0089510-mRNA-1:cds;Parent=Msa0089510-mRNA-1
chr1_2 CDS 71151289 71151464 71151289 ID=Msa0089510-mRNA-1:cds;Parent=Msa0089510-mRNA-1
chr1_2 CDS 71150654 71150758 71150654 ID=Msa0089510-mRNA-1:cds;Parent=Msa0089510-mRNA-1
chr1_2 three_prime_UTR 71150461 71150653 71150461 ID=Msa0089510-mRNA-1:three_prime_utr;Parent=Msa0089510-mRNA-1
Gene Sequence

>Msa0089510

ATGGCACTTGCTCAAGCTCAAACCTCTGCTTCTCTTTCTGTCTCTCTTCGTGATGCACGTGTTTTCACAACAAGAAACTGCCCTGCAACCTCTGCTCAATTTCCTAAACCAACTTTGGTTCCTGCTAGAGCATCCTTTGCAACTGGTTCCCCACTAATGATCCGGAGCAATCATAAAAGGAAGTTAGCATGCAAAGCAATGCCAGTTTCGATAAGATGCGAGCAAAACACCAAGGATGGGAACGGTTTGGATGTATGGCTTGGCCGGGTAGCCATGGTTGGTTTTGCAGTGGCCATTACTGTTGAAATTACTTCTGGAAAGGGACTCCTAGAGAACTTTGGACTCACAAGTCCACTGCCTACAGTTGCCTTGGCCGTAACAGGACTGGTGGGTGTCTTGACAGCAGTTTTCATCTTCCAGTCAGCCTCAGAGAACTGA

Protein sequence

>Msa0089510

MALAQAQTSASLSVSLRDARVFTTRNCPATSAQFPKPTLVPARASFATGSPLMIRSNHKRKLACKAMPVSIRCEQNTKDGNGLDVWLGRVAMVGFAVAITVEITSGKGLLENFGLTSPLPTVALAVTGLVGVLTAVFIFQSASEN*