AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089520 MtrunA17_Chr1g0208171 97.241 145 4 0 1 145 1 145 1.13e-99 282
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089520 AT4G34190.1 56.849 146 60 2 3 145 1 146 3.10e-47 150

Find 59 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTGGATTCATCCAATTA+AGG 0.253614 1_2:+71156205 None:intergenic
AAGAATAGGTAGAGATAATA+AGG 0.255478 1_2:-71158348 Msa0089520:five_prime_UTR
GGTAGAGATAATAAGGAATA+AGG 0.291378 1_2:-71158341 Msa0089520:five_prime_UTR
TGCTCGCATCTTATCGAAAC+TGG 0.316015 1_2:+71157122 None:intergenic
ATTACTGTTGAAATTACTTC+TGG 0.319891 1_2:-71157029 Msa0089520:CDS
GCAGGAACCAAAGTTGGTTT+AGG 0.337277 1_2:+71158068 None:intergenic
ATGGGAACGGTTTGGATGTA+TGG 0.346112 1_2:-71157088 Msa0089520:CDS
TGATCCGGAGCAATCATAAA+AGG 0.355506 1_2:-71157166 Msa0089520:CDS
TTATTCTTGGTGAAAAGAAT+TGG 0.356415 1_2:-71156257 Msa0089520:three_prime_UTR
GGAAATTGAGCAGAGGTTGC+AGG 0.362163 1_2:+71158089 None:intergenic
ACAGTTGCCTTGGCCGTAAC+AGG 0.365155 1_2:-71156433 Msa0089520:CDS
TCAATTTCCTAAACCAACTT+TGG 0.392958 1_2:-71158075 Msa0089520:CDS
GTAAATTCTGTAGTTTCAAA+TGG 0.416774 1_2:-71156327 Msa0089520:three_prime_UTR
GCTAGAGCATCCTTTGCAAC+TGG 0.420563 1_2:-71158047 Msa0089520:CDS
GTTGAAATTACTTCTGGAAA+GGG 0.425412 1_2:-71157023 Msa0089520:CDS
ATCAGTTCTCTGAGGCTGAC+TGG 0.425625 1_2:+71156377 None:intergenic
GTTTGGATGTATGGCTTGGC+CGG 0.431706 1_2:-71157079 Msa0089520:CDS
TCTCTTTCTGTCTCTCTTCG+TGG 0.434411 1_2:-71158249 Msa0089520:intron
AGAGAACTGATTAAATATTC+AGG 0.439616 1_2:-71156365 Msa0089520:exon
ATCCAAACCGTTCCCATCCT+TGG 0.459057 1_2:+71157094 None:intergenic
CACCAAGGATGGGAACGGTT+TGG 0.459933 1_2:-71157096 Msa0089520:CDS
CATCCGTTGTTCAAAAGAAT+AGG 0.464135 1_2:-71158362 Msa0089520:five_prime_UTR
AGAAGTAATTTCAACAGTAA+TGG 0.474215 1_2:+71157031 None:intergenic
GCTCTAGCAGGAACCAAAGT+TGG 0.477360 1_2:+71158062 None:intergenic
CTTGGCCGGGTAGCCATGGT+TGG 0.479318 1_2:-71157065 Msa0089520:CDS
TTGACTTGTCTATAGTGATC+CGG 0.483262 1_2:-71157181 Msa0089520:intron
AATTAGAAAAGTTACTTAGT+GGG 0.486476 1_2:+71158021 None:intergenic
TGCGAGCAAAACACCAAGGA+TGG 0.496748 1_2:-71157107 Msa0089520:CDS
GACACCCACCAGTCCTGTTA+CGG 0.499084 1_2:+71156420 None:intergenic
TGCCTTGGCCGTAACAGGAC+TGG 0.500300 1_2:-71156428 Msa0089520:CDS
TGTTGAAATTACTTCTGGAA+AGG 0.500335 1_2:-71157024 Msa0089520:CDS
TCCACTGCCTACAGTTGCCT+TGG 0.503726 1_2:-71156443 Msa0089520:CDS
CACCAGTCCTGTTACGGCCA+AGG 0.507970 1_2:+71156426 None:intergenic
AACGGTTTGGATGTATGGCT+TGG 0.508500 1_2:-71157083 Msa0089520:CDS
TTTGGATGTATGGCTTGGCC+GGG 0.518757 1_2:-71157078 Msa0089520:CDS
GAAATTGAGCAGAGGTTGCA+GGG 0.522794 1_2:+71158090 None:intergenic
GTTGCAAAGGATGCTCTAGC+AGG 0.542909 1_2:+71158050 None:intergenic
CAAAACCAACCATGGCTACC+CGG 0.549263 1_2:+71157060 None:intergenic
AACTGATTAAATATTCAGGC+TGG 0.550822 1_2:-71156361 Msa0089520:exon
AGAGACAGAAAGAGAAGCAG+AGG 0.554751 1_2:+71158257 None:intergenic
GCCAAGGCAACTGTAGGCAG+TGG 0.574143 1_2:+71156442 None:intergenic
ATTAGAAAAGTTACTTAGTG+GGG 0.581454 1_2:+71158022 None:intergenic
CTTGGCCGTAACAGGACTGG+TGG 0.598603 1_2:-71156425 Msa0089520:CDS
ATGGCTTGGCCGGGTAGCCA+TGG 0.601341 1_2:-71157069 Msa0089520:CDS
TAGTGGGGAACCAGTTGCAA+AGG 0.603632 1_2:+71158037 None:intergenic
TGGTTTAGGAAATTGAGCAG+AGG 0.606409 1_2:+71158082 None:intergenic
TGATGAGTCAGAGATATGAA+TGG 0.612820 1_2:-71158396 Msa0089520:five_prime_UTR
GTTACGGCCAAGGCAACTGT+AGG 0.623177 1_2:+71156436 None:intergenic
GCGAGCAAAACACCAAGGAT+GGG 0.623826 1_2:-71157106 Msa0089520:CDS
GGCCACTGCAAAACCAACCA+TGG 0.623933 1_2:+71157052 None:intergenic
TTCTGGAAAGGGACTCCTAG+AGG 0.632552 1_2:-71157012 Msa0089520:intron
GAACAACGGATGATGAAACA+TGG 0.633626 1_2:+71158373 None:intergenic
ATAACTTACTTCGTCAACCA+TGG 0.636574 1_2:-71158298 Msa0089520:exon
TTGAGCTTGAGCAAGTGCCA+TGG 0.644960 1_2:+71158281 None:intergenic
CAAAACACCAAGGATGGGAA+CGG 0.652602 1_2:-71157101 Msa0089520:CDS
TTGGCCGTAACAGGACTGGT+GGG 0.657190 1_2:-71156424 Msa0089520:CDS
AATATTTAATCAGTTCTCTG+AGG 0.658496 1_2:+71156369 None:intergenic
CTGACTCATCAACGCTAACG+TGG 0.669926 1_2:+71158408 None:intergenic
AAGATGCGAGCAAAACACCA+AGG 0.726429 1_2:-71157111 Msa0089520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTAATTTTTTAA+AGG - chr1_2:71156608-71156627 Msa0089520:intron 0.0%
!!! TATTATTATTAATTTTTTAA+AGG - chr1_2:71156608-71156627 Msa0089520:intron 0.0%
!! CTATCAAAAAAAAAAAAAAA+TGG + chr1_2:71156397-71156416 None:intergenic 10.0%
!! ATAAAAAATAAATGATCTAT+AGG - chr1_2:71156819-71156838 Msa0089520:intron 10.0%
!! CTATCAAAAAAAAAAAAAAA+TGG + chr1_2:71156397-71156416 None:intergenic 10.0%
!! ATAAAAAATAAATGATCTAT+AGG - chr1_2:71156819-71156838 Msa0089520:intron 10.0%
!! AAAAAAAAAAAAATGGAACA+GGG + chr1_2:71156390-71156409 None:intergenic 15.0%
!! AAAAAAAAAAAAAATGGAAC+AGG + chr1_2:71156391-71156410 None:intergenic 15.0%
!!! TTTTCTTGTAATATTATTCT+TGG - chr1_2:71158324-71158343 Msa0089520:five_prime_UTR 15.0%
!!! CATTAATCATGTTAAATTTT+TGG - chr1_2:71158363-71158382 Msa0089520:five_prime_UTR 15.0%
!! AAAAAAAAAAAAATGGAACA+GGG + chr1_2:71156390-71156409 None:intergenic 15.0%
!! AAAAAAAAAAAAAATGGAAC+AGG + chr1_2:71156391-71156410 None:intergenic 15.0%
!!! TTTTCTTGTAATATTATTCT+TGG - chr1_2:71158324-71158343 Msa0089520:five_prime_UTR 15.0%
!!! CATTAATCATGTTAAATTTT+TGG - chr1_2:71158363-71158382 Msa0089520:five_prime_UTR 15.0%
!! AAAAAAAAAAAATGGAACAG+GGG + chr1_2:71156389-71156408 None:intergenic 20.0%
!! AATTAGAAAAGTTACTTAGT+GGG + chr1_2:71156576-71156595 None:intergenic 20.0%
!! TCTAAAAGCCAATATAATAT+CGG + chr1_2:71156687-71156706 None:intergenic 20.0%
!!! AATTTCATTTTGTAGTATGA+GGG - chr1_2:71156706-71156725 Msa0089520:intron 20.0%
!!! AATTAAAATGAGTGTCATTT+AGG + chr1_2:71157138-71157157 None:intergenic 20.0%
!!! AAATGACACTCATTTTAATT+CGG - chr1_2:71157138-71157157 Msa0089520:CDS 20.0%
!! AAAAAAAAAAAATGGAACAG+GGG + chr1_2:71156389-71156408 None:intergenic 20.0%
!! AATTAGAAAAGTTACTTAGT+GGG + chr1_2:71156576-71156595 None:intergenic 20.0%
!! TCTAAAAGCCAATATAATAT+CGG + chr1_2:71156687-71156706 None:intergenic 20.0%
!!! AATTTCATTTTGTAGTATGA+GGG - chr1_2:71156706-71156725 Msa0089520:intron 20.0%
!!! AATTAAAATGAGTGTCATTT+AGG + chr1_2:71157138-71157157 None:intergenic 20.0%
!!! AAATGACACTCATTTTAATT+CGG - chr1_2:71157138-71157157 Msa0089520:CDS 20.0%
! AAGAATAGGTAGAGATAATA+AGG - chr1_2:71156246-71156265 Msa0089520:three_prime_UTR 25.0%
! ATTAGAAAAGTTACTTAGTG+GGG + chr1_2:71156575-71156594 None:intergenic 25.0%
! GAATTAGAAAAGTTACTTAG+TGG + chr1_2:71156577-71156596 None:intergenic 25.0%
!! GAATTTCATTTTGTAGTATG+AGG - chr1_2:71156705-71156724 Msa0089520:intron 25.0%
!! GTAATTAGTAGTACTACTTT+TGG - chr1_2:71156759-71156778 Msa0089520:intron 25.0%
!!! AATGACACTCATTTTAATTC+GGG - chr1_2:71157139-71157158 Msa0089520:CDS 25.0%
! TATTATACTATAGCATCGTT+TGG - chr1_2:71157178-71157197 Msa0089520:intron 25.0%
! TAATCTTATACAATAAGACG+CGG - chr1_2:71157210-71157229 Msa0089520:intron 25.0%
!! AGATTAACTTCATAGTCTTA+GGG + chr1_2:71157286-71157305 None:intergenic 25.0%
! TAGATTAACTTCATAGTCTT+AGG + chr1_2:71157287-71157306 None:intergenic 25.0%
! TTGTTGAAATAAGATTCGTT+AGG - chr1_2:71157376-71157395 Msa0089520:intron 25.0%
! AGAAGTAATTTCAACAGTAA+TGG + chr1_2:71157566-71157585 None:intergenic 25.0%
! ATTACTGTTGAAATTACTTC+TGG - chr1_2:71157565-71157584 Msa0089520:intron 25.0%
!! TCCATCAAATGATTGATAAT+TGG - chr1_2:71157706-71157725 Msa0089520:intron 25.0%
!!! ACATTTGAGTTTTGACAAAT+GGG + chr1_2:71157757-71157776 None:intergenic 25.0%
!!! AACATTTGAGTTTTGACAAA+TGG + chr1_2:71157758-71157777 None:intergenic 25.0%
! AAACGTAATAAAGTTCGTTA+CGG + chr1_2:71158004-71158023 None:intergenic 25.0%
! AATATTTAATCAGTTCTCTG+AGG + chr1_2:71158228-71158247 None:intergenic 25.0%
! AGAGAACTGATTAAATATTC+AGG - chr1_2:71158229-71158248 Msa0089520:intron 25.0%
! GTAAATTCTGTAGTTTCAAA+TGG - chr1_2:71158267-71158286 Msa0089520:CDS 25.0%
! TTATTCTTGGTGAAAAGAAT+TGG - chr1_2:71158337-71158356 Msa0089520:five_prime_UTR 25.0%
!!! AAATTTTTGGAAGCCTTAAT+TGG - chr1_2:71158376-71158395 Msa0089520:five_prime_UTR 25.0%
!!! ACAAAAAATAAGCATTGACT+TGG + chr1_2:71158408-71158427 None:intergenic 25.0%
! AAGAATAGGTAGAGATAATA+AGG - chr1_2:71156246-71156265 Msa0089520:three_prime_UTR 25.0%
! ATTAGAAAAGTTACTTAGTG+GGG + chr1_2:71156575-71156594 None:intergenic 25.0%
! GAATTAGAAAAGTTACTTAG+TGG + chr1_2:71156577-71156596 None:intergenic 25.0%
!! GAATTTCATTTTGTAGTATG+AGG - chr1_2:71156705-71156724 Msa0089520:intron 25.0%
!! GTAATTAGTAGTACTACTTT+TGG - chr1_2:71156759-71156778 Msa0089520:intron 25.0%
!!! AATGACACTCATTTTAATTC+GGG - chr1_2:71157139-71157158 Msa0089520:CDS 25.0%
! TATTATACTATAGCATCGTT+TGG - chr1_2:71157178-71157197 Msa0089520:intron 25.0%
! TAATCTTATACAATAAGACG+CGG - chr1_2:71157210-71157229 Msa0089520:intron 25.0%
!! AGATTAACTTCATAGTCTTA+GGG + chr1_2:71157286-71157305 None:intergenic 25.0%
! TAGATTAACTTCATAGTCTT+AGG + chr1_2:71157287-71157306 None:intergenic 25.0%
! TTGTTGAAATAAGATTCGTT+AGG - chr1_2:71157376-71157395 Msa0089520:intron 25.0%
! AGAAGTAATTTCAACAGTAA+TGG + chr1_2:71157566-71157585 None:intergenic 25.0%
! ATTACTGTTGAAATTACTTC+TGG - chr1_2:71157565-71157584 Msa0089520:intron 25.0%
!! TCCATCAAATGATTGATAAT+TGG - chr1_2:71157706-71157725 Msa0089520:intron 25.0%
!!! ACATTTGAGTTTTGACAAAT+GGG + chr1_2:71157757-71157776 None:intergenic 25.0%
!!! AACATTTGAGTTTTGACAAA+TGG + chr1_2:71157758-71157777 None:intergenic 25.0%
! AAACGTAATAAAGTTCGTTA+CGG + chr1_2:71158004-71158023 None:intergenic 25.0%
! AATATTTAATCAGTTCTCTG+AGG + chr1_2:71158228-71158247 None:intergenic 25.0%
! AGAGAACTGATTAAATATTC+AGG - chr1_2:71158229-71158248 Msa0089520:intron 25.0%
! GTAAATTCTGTAGTTTCAAA+TGG - chr1_2:71158267-71158286 Msa0089520:CDS 25.0%
! TTATTCTTGGTGAAAAGAAT+TGG - chr1_2:71158337-71158356 Msa0089520:five_prime_UTR 25.0%
!!! AAATTTTTGGAAGCCTTAAT+TGG - chr1_2:71158376-71158395 Msa0089520:five_prime_UTR 25.0%
!!! ACAAAAAATAAGCATTGACT+TGG + chr1_2:71158408-71158427 None:intergenic 25.0%
! CTACCTATTCTTTTGAACAA+CGG + chr1_2:71156238-71156257 None:intergenic 30.0%
GGTAGAGATAATAAGGAATA+AGG - chr1_2:71156253-71156272 Msa0089520:three_prime_UTR 30.0%
ATTGAGTGCTACAATAGAAA+TGG + chr1_2:71156432-71156451 None:intergenic 30.0%
TCAATTTCCTAAACCAACTT+TGG - chr1_2:71156519-71156538 Msa0089520:intron 30.0%
GTAGACTACCGATATTATAT+TGG - chr1_2:71156676-71156695 Msa0089520:intron 30.0%
GTACTACTAATTACAAGCAA+AGG + chr1_2:71156753-71156772 None:intergenic 30.0%
!! TGCAGATTTTGCTATAGAAT+GGG + chr1_2:71156850-71156869 None:intergenic 30.0%
!! ATGCAGATTTTGCTATAGAA+TGG + chr1_2:71156851-71156870 None:intergenic 30.0%
!!! ATGACTGAGTTCTTTGTTTT+TGG - chr1_2:71157052-71157071 Msa0089520:CDS 30.0%
GCAATAATATTGAATAGAGG+AGG + chr1_2:71157093-71157112 None:intergenic 30.0%
CAGGCAATAATATTGAATAG+AGG + chr1_2:71157096-71157115 None:intergenic 30.0%
! AATTCGGGTTTATTCACATT+TGG - chr1_2:71157154-71157173 Msa0089520:CDS 30.0%
! GATTAACTTCATAGTCTTAG+GGG + chr1_2:71157285-71157304 None:intergenic 30.0%
! TGTTGAAATTACTTCTGGAA+AGG - chr1_2:71157570-71157589 Msa0089520:intron 30.0%
! GTTGAAATTACTTCTGGAAA+GGG - chr1_2:71157571-71157590 Msa0089520:intron 30.0%
GTAACTCAAAGTTTACGTTA+TGG + chr1_2:71157620-71157639 None:intergenic 30.0%
GCCAATTATCAATCATTTGA+TGG + chr1_2:71157710-71157729 None:intergenic 30.0%
!! ATTTGAGTTTTGACAAATGG+GGG + chr1_2:71157755-71157774 None:intergenic 30.0%
!! CATTTGAGTTTTGACAAATG+GGG + chr1_2:71157756-71157775 None:intergenic 30.0%
CAAAACTCAAATGTTTGCTT+TGG - chr1_2:71157763-71157782 Msa0089520:intron 30.0%
!!! TTGGTATTTTAGCTGCAATA+TGG - chr1_2:71157782-71157801 Msa0089520:intron 30.0%
CACTATAAAGTAAAGGAGAA+AGG + chr1_2:71157815-71157834 None:intergenic 30.0%
CCATACACACTATAAAGTAA+AGG + chr1_2:71157822-71157841 None:intergenic 30.0%
CCTTTACTTTATAGTGTGTA+TGG - chr1_2:71157819-71157838 Msa0089520:intron 30.0%
! GATCTTTTAAGCTATTGAGT+TGG - chr1_2:71157878-71157897 Msa0089520:intron 30.0%
!! ACTTTGATTTTGCAGAACTT+TGG - chr1_2:71158119-71158138 Msa0089520:CDS 30.0%
AACTGATTAAATATTCAGGC+TGG - chr1_2:71158233-71158252 Msa0089520:intron 30.0%
! CTACCTATTCTTTTGAACAA+CGG + chr1_2:71156238-71156257 None:intergenic 30.0%
GGTAGAGATAATAAGGAATA+AGG - chr1_2:71156253-71156272 Msa0089520:three_prime_UTR 30.0%
ATTGAGTGCTACAATAGAAA+TGG + chr1_2:71156432-71156451 None:intergenic 30.0%
TCAATTTCCTAAACCAACTT+TGG - chr1_2:71156519-71156538 Msa0089520:intron 30.0%
GTAGACTACCGATATTATAT+TGG - chr1_2:71156676-71156695 Msa0089520:intron 30.0%
GTACTACTAATTACAAGCAA+AGG + chr1_2:71156753-71156772 None:intergenic 30.0%
!! TGCAGATTTTGCTATAGAAT+GGG + chr1_2:71156850-71156869 None:intergenic 30.0%
!! ATGCAGATTTTGCTATAGAA+TGG + chr1_2:71156851-71156870 None:intergenic 30.0%
!!! ATGACTGAGTTCTTTGTTTT+TGG - chr1_2:71157052-71157071 Msa0089520:CDS 30.0%
GCAATAATATTGAATAGAGG+AGG + chr1_2:71157093-71157112 None:intergenic 30.0%
CAGGCAATAATATTGAATAG+AGG + chr1_2:71157096-71157115 None:intergenic 30.0%
! AATTCGGGTTTATTCACATT+TGG - chr1_2:71157154-71157173 Msa0089520:CDS 30.0%
! GATTAACTTCATAGTCTTAG+GGG + chr1_2:71157285-71157304 None:intergenic 30.0%
! TGTTGAAATTACTTCTGGAA+AGG - chr1_2:71157570-71157589 Msa0089520:intron 30.0%
! GTTGAAATTACTTCTGGAAA+GGG - chr1_2:71157571-71157590 Msa0089520:intron 30.0%
GTAACTCAAAGTTTACGTTA+TGG + chr1_2:71157620-71157639 None:intergenic 30.0%
GCCAATTATCAATCATTTGA+TGG + chr1_2:71157710-71157729 None:intergenic 30.0%
!! ATTTGAGTTTTGACAAATGG+GGG + chr1_2:71157755-71157774 None:intergenic 30.0%
!! CATTTGAGTTTTGACAAATG+GGG + chr1_2:71157756-71157775 None:intergenic 30.0%
CAAAACTCAAATGTTTGCTT+TGG - chr1_2:71157763-71157782 Msa0089520:intron 30.0%
!!! TTGGTATTTTAGCTGCAATA+TGG - chr1_2:71157782-71157801 Msa0089520:intron 30.0%
CACTATAAAGTAAAGGAGAA+AGG + chr1_2:71157815-71157834 None:intergenic 30.0%
CCATACACACTATAAAGTAA+AGG + chr1_2:71157822-71157841 None:intergenic 30.0%
CCTTTACTTTATAGTGTGTA+TGG - chr1_2:71157819-71157838 Msa0089520:intron 30.0%
! GATCTTTTAAGCTATTGAGT+TGG - chr1_2:71157878-71157897 Msa0089520:intron 30.0%
!! ACTTTGATTTTGCAGAACTT+TGG - chr1_2:71158119-71158138 Msa0089520:CDS 30.0%
AACTGATTAAATATTCAGGC+TGG - chr1_2:71158233-71158252 Msa0089520:intron 30.0%
TGATGAGTCAGAGATATGAA+TGG - chr1_2:71156198-71156217 Msa0089520:three_prime_UTR 35.0%
CATCCGTTGTTCAAAAGAAT+AGG - chr1_2:71156232-71156251 Msa0089520:three_prime_UTR 35.0%
ATAACTTACTTCGTCAACCA+TGG - chr1_2:71156296-71156315 Msa0089520:three_prime_UTR 35.0%
CTACAATAGAAATGGAACAG+GGG + chr1_2:71156424-71156443 None:intergenic 35.0%
GCTACAATAGAAATGGAACA+GGG + chr1_2:71156425-71156444 None:intergenic 35.0%
TGCTACAATAGAAATGGAAC+AGG + chr1_2:71156426-71156445 None:intergenic 35.0%
! TTTGAAGCAACTGTGAGAAA+TGG - chr1_2:71156963-71156982 Msa0089520:intron 35.0%
! ATTATTGCCTGCTTAGTTCT+TGG - chr1_2:71157105-71157124 Msa0089520:CDS 35.0%
GTTAATCTATGATGCCAGTT+AGG - chr1_2:71157298-71157317 Msa0089520:intron 35.0%
GAAAAGCTATGATGCTAGTT+AGG - chr1_2:71157328-71157347 Msa0089520:intron 35.0%
!! TTGACTTGTCTATAGTGATC+CGG - chr1_2:71157413-71157432 Msa0089520:intron 35.0%
! ACTTCCTTTTATGATTGCTC+CGG + chr1_2:71157435-71157454 None:intergenic 35.0%
!! GAGTTGGTGTAGTGATATAT+AGG - chr1_2:71157894-71157913 Msa0089520:intron 35.0%
GACTTGGATTCATCCAATTA+AGG + chr1_2:71158392-71158411 None:intergenic 35.0%
TGATGAGTCAGAGATATGAA+TGG - chr1_2:71156198-71156217 Msa0089520:three_prime_UTR 35.0%
CATCCGTTGTTCAAAAGAAT+AGG - chr1_2:71156232-71156251 Msa0089520:three_prime_UTR 35.0%
ATAACTTACTTCGTCAACCA+TGG - chr1_2:71156296-71156315 Msa0089520:three_prime_UTR 35.0%
CTACAATAGAAATGGAACAG+GGG + chr1_2:71156424-71156443 None:intergenic 35.0%
GCTACAATAGAAATGGAACA+GGG + chr1_2:71156425-71156444 None:intergenic 35.0%
TGCTACAATAGAAATGGAAC+AGG + chr1_2:71156426-71156445 None:intergenic 35.0%
! TTTGAAGCAACTGTGAGAAA+TGG - chr1_2:71156963-71156982 Msa0089520:intron 35.0%
! ATTATTGCCTGCTTAGTTCT+TGG - chr1_2:71157105-71157124 Msa0089520:CDS 35.0%
GTTAATCTATGATGCCAGTT+AGG - chr1_2:71157298-71157317 Msa0089520:intron 35.0%
GAAAAGCTATGATGCTAGTT+AGG - chr1_2:71157328-71157347 Msa0089520:intron 35.0%
!! TTGACTTGTCTATAGTGATC+CGG - chr1_2:71157413-71157432 Msa0089520:intron 35.0%
! ACTTCCTTTTATGATTGCTC+CGG + chr1_2:71157435-71157454 None:intergenic 35.0%
!! GAGTTGGTGTAGTGATATAT+AGG - chr1_2:71157894-71157913 Msa0089520:intron 35.0%
GACTTGGATTCATCCAATTA+AGG + chr1_2:71158392-71158411 None:intergenic 35.0%
GAACAACGGATGATGAAACA+TGG + chr1_2:71156224-71156243 None:intergenic 40.0%
AACAGGGGATTGAGAGTAAT+GGG + chr1_2:71156374-71156393 None:intergenic 40.0%
TGGTTTAGGAAATTGAGCAG+AGG + chr1_2:71156515-71156534 None:intergenic 40.0%
ATTGTTGCCAAGAACTAAGC+AGG + chr1_2:71157115-71157134 None:intergenic 40.0%
CTATGATGCTAGTTAGGCTT+CGG - chr1_2:71157334-71157353 Msa0089520:intron 40.0%
TATGATGCTAGTTAGGCTTC+GGG - chr1_2:71157335-71157354 Msa0089520:intron 40.0%
TGATCCGGAGCAATCATAAA+AGG - chr1_2:71157428-71157447 Msa0089520:intron 40.0%
AAGAGAGGTTGAGATGAGTA+AGG + chr1_2:71158040-71158059 None:intergenic 40.0%
GCTAAACTGAGTGATAAGAG+AGG + chr1_2:71158055-71158074 None:intergenic 40.0%
GAACAACGGATGATGAAACA+TGG + chr1_2:71156224-71156243 None:intergenic 40.0%
AACAGGGGATTGAGAGTAAT+GGG + chr1_2:71156374-71156393 None:intergenic 40.0%
TGGTTTAGGAAATTGAGCAG+AGG + chr1_2:71156515-71156534 None:intergenic 40.0%
ATTGTTGCCAAGAACTAAGC+AGG + chr1_2:71157115-71157134 None:intergenic 40.0%
CTATGATGCTAGTTAGGCTT+CGG - chr1_2:71157334-71157353 Msa0089520:intron 40.0%
TATGATGCTAGTTAGGCTTC+GGG - chr1_2:71157335-71157354 Msa0089520:intron 40.0%
TGATCCGGAGCAATCATAAA+AGG - chr1_2:71157428-71157447 Msa0089520:intron 40.0%
AAGAGAGGTTGAGATGAGTA+AGG + chr1_2:71158040-71158059 None:intergenic 40.0%
GCTAAACTGAGTGATAAGAG+AGG + chr1_2:71158055-71158074 None:intergenic 40.0%
AGAGACAGAAAGAGAAGCAG+AGG + chr1_2:71156340-71156359 None:intergenic 45.0%
TCTCTTTCTGTCTCTCTTCG+TGG - chr1_2:71156345-71156364 Msa0089520:three_prime_UTR 45.0%
GAACAGGGGATTGAGAGTAA+TGG + chr1_2:71156375-71156394 None:intergenic 45.0%
GAAATTGAGCAGAGGTTGCA+GGG + chr1_2:71156507-71156526 None:intergenic 45.0%
! GCAGGAACCAAAGTTGGTTT+AGG + chr1_2:71156529-71156548 None:intergenic 45.0%
GAAGCAACTGTGAGAAATGG+TGG - chr1_2:71156966-71156985 Msa0089520:intron 45.0%
! GCTTTTCTGCAATGCCTAAC+TGG + chr1_2:71157315-71157334 None:intergenic 45.0%
ATGATGCTAGTTAGGCTTCG+GGG - chr1_2:71157336-71157355 Msa0089520:intron 45.0%
TGCTCGCATCTTATCGAAAC+TGG + chr1_2:71157475-71157494 None:intergenic 45.0%
AAGATGCGAGCAAAACACCA+AGG - chr1_2:71157483-71157502 Msa0089520:intron 45.0%
CAAAACACCAAGGATGGGAA+CGG - chr1_2:71157493-71157512 Msa0089520:intron 45.0%
! ATGGGAACGGTTTGGATGTA+TGG - chr1_2:71157506-71157525 Msa0089520:intron 45.0%
! AACGGTTTGGATGTATGGCT+TGG - chr1_2:71157511-71157530 Msa0089520:intron 45.0%
TGGTGCGCAATATTACCTCT+AGG + chr1_2:71157600-71157619 None:intergenic 45.0%
CGTTGAAACTTGCACTCACT+TGG + chr1_2:71157973-71157992 None:intergenic 45.0%
AGAGACAGAAAGAGAAGCAG+AGG + chr1_2:71156340-71156359 None:intergenic 45.0%
TCTCTTTCTGTCTCTCTTCG+TGG - chr1_2:71156345-71156364 Msa0089520:three_prime_UTR 45.0%
GAACAGGGGATTGAGAGTAA+TGG + chr1_2:71156375-71156394 None:intergenic 45.0%
GAAATTGAGCAGAGGTTGCA+GGG + chr1_2:71156507-71156526 None:intergenic 45.0%
! GCAGGAACCAAAGTTGGTTT+AGG + chr1_2:71156529-71156548 None:intergenic 45.0%
GAAGCAACTGTGAGAAATGG+TGG - chr1_2:71156966-71156985 Msa0089520:intron 45.0%
! GCTTTTCTGCAATGCCTAAC+TGG + chr1_2:71157315-71157334 None:intergenic 45.0%
ATGATGCTAGTTAGGCTTCG+GGG - chr1_2:71157336-71157355 Msa0089520:intron 45.0%
TGCTCGCATCTTATCGAAAC+TGG + chr1_2:71157475-71157494 None:intergenic 45.0%
AAGATGCGAGCAAAACACCA+AGG - chr1_2:71157483-71157502 Msa0089520:intron 45.0%
CAAAACACCAAGGATGGGAA+CGG - chr1_2:71157493-71157512 Msa0089520:intron 45.0%
! ATGGGAACGGTTTGGATGTA+TGG - chr1_2:71157506-71157525 Msa0089520:intron 45.0%
! AACGGTTTGGATGTATGGCT+TGG - chr1_2:71157511-71157530 Msa0089520:intron 45.0%
TGGTGCGCAATATTACCTCT+AGG + chr1_2:71157600-71157619 None:intergenic 45.0%
CGTTGAAACTTGCACTCACT+TGG + chr1_2:71157973-71157992 None:intergenic 45.0%
CTGACTCATCAACGCTAACG+TGG + chr1_2:71156189-71156208 None:intergenic 50.0%
TTGAGCTTGAGCAAGTGCCA+TGG + chr1_2:71156316-71156335 None:intergenic 50.0%
GGAAATTGAGCAGAGGTTGC+AGG + chr1_2:71156508-71156527 None:intergenic 50.0%
GCTCTAGCAGGAACCAAAGT+TGG + chr1_2:71156535-71156554 None:intergenic 50.0%
GTTGCAAAGGATGCTCTAGC+AGG + chr1_2:71156547-71156566 None:intergenic 50.0%
! GCTAGAGCATCCTTTGCAAC+TGG - chr1_2:71156547-71156566 Msa0089520:intron 50.0%
TAGTGGGGAACCAGTTGCAA+AGG + chr1_2:71156560-71156579 None:intergenic 50.0%
GCTCACAAGCTTCACTTGCT+CGG + chr1_2:71156936-71156955 None:intergenic 50.0%
TGCGAGCAAAACACCAAGGA+TGG - chr1_2:71157487-71157506 Msa0089520:intron 50.0%
GCGAGCAAAACACCAAGGAT+GGG - chr1_2:71157488-71157507 Msa0089520:intron 50.0%
ATCCAAACCGTTCCCATCCT+TGG + chr1_2:71157503-71157522 None:intergenic 50.0%
! GTTTGGATGTATGGCTTGGC+CGG - chr1_2:71157515-71157534 Msa0089520:intron 50.0%
! TTTGGATGTATGGCTTGGCC+GGG - chr1_2:71157516-71157535 Msa0089520:intron 50.0%
CAAAACCAACCATGGCTACC+CGG + chr1_2:71157537-71157556 None:intergenic 50.0%
!!! AGCCATGGTTGGTTTTGCAG+TGG - chr1_2:71157540-71157559 Msa0089520:intron 50.0%
! TTCTGGAAAGGGACTCCTAG+AGG - chr1_2:71157582-71157601 Msa0089520:intron 50.0%
!! ATCAGTTCTCTGAGGCTGAC+TGG + chr1_2:71158220-71158239 None:intergenic 50.0%
CTGACTCATCAACGCTAACG+TGG + chr1_2:71156189-71156208 None:intergenic 50.0%
TTGAGCTTGAGCAAGTGCCA+TGG + chr1_2:71156316-71156335 None:intergenic 50.0%
GGAAATTGAGCAGAGGTTGC+AGG + chr1_2:71156508-71156527 None:intergenic 50.0%
GCTCTAGCAGGAACCAAAGT+TGG + chr1_2:71156535-71156554 None:intergenic 50.0%
GTTGCAAAGGATGCTCTAGC+AGG + chr1_2:71156547-71156566 None:intergenic 50.0%
! GCTAGAGCATCCTTTGCAAC+TGG - chr1_2:71156547-71156566 Msa0089520:intron 50.0%
TAGTGGGGAACCAGTTGCAA+AGG + chr1_2:71156560-71156579 None:intergenic 50.0%
GCTCACAAGCTTCACTTGCT+CGG + chr1_2:71156936-71156955 None:intergenic 50.0%
TGCGAGCAAAACACCAAGGA+TGG - chr1_2:71157487-71157506 Msa0089520:intron 50.0%
GCGAGCAAAACACCAAGGAT+GGG - chr1_2:71157488-71157507 Msa0089520:intron 50.0%
ATCCAAACCGTTCCCATCCT+TGG + chr1_2:71157503-71157522 None:intergenic 50.0%
! GTTTGGATGTATGGCTTGGC+CGG - chr1_2:71157515-71157534 Msa0089520:intron 50.0%
! TTTGGATGTATGGCTTGGCC+GGG - chr1_2:71157516-71157535 Msa0089520:intron 50.0%
CAAAACCAACCATGGCTACC+CGG + chr1_2:71157537-71157556 None:intergenic 50.0%
!!! AGCCATGGTTGGTTTTGCAG+TGG - chr1_2:71157540-71157559 Msa0089520:intron 50.0%
! TTCTGGAAAGGGACTCCTAG+AGG - chr1_2:71157582-71157601 Msa0089520:intron 50.0%
!! ATCAGTTCTCTGAGGCTGAC+TGG + chr1_2:71158220-71158239 None:intergenic 50.0%
TGCTAGTTAGGCTTCGGGGA+AGG - chr1_2:71157340-71157359 Msa0089520:intron 55.0%
TAGTTAGGCTTCGGGGAAGG+TGG - chr1_2:71157343-71157362 Msa0089520:intron 55.0%
CACCAAGGATGGGAACGGTT+TGG - chr1_2:71157498-71157517 Msa0089520:intron 55.0%
GGCCACTGCAAAACCAACCA+TGG + chr1_2:71157545-71157564 None:intergenic 55.0%
TCCACTGCCTACAGTTGCCT+TGG - chr1_2:71158151-71158170 Msa0089520:intron 55.0%
GTTACGGCCAAGGCAACTGT+AGG + chr1_2:71158161-71158180 None:intergenic 55.0%
ACAGTTGCCTTGGCCGTAAC+AGG - chr1_2:71158161-71158180 Msa0089520:intron 55.0%
! TTGGCCGTAACAGGACTGGT+GGG - chr1_2:71158170-71158189 Msa0089520:intron 55.0%
GACACCCACCAGTCCTGTTA+CGG + chr1_2:71158177-71158196 None:intergenic 55.0%
TGCTAGTTAGGCTTCGGGGA+AGG - chr1_2:71157340-71157359 Msa0089520:intron 55.0%
TAGTTAGGCTTCGGGGAAGG+TGG - chr1_2:71157343-71157362 Msa0089520:intron 55.0%
CACCAAGGATGGGAACGGTT+TGG - chr1_2:71157498-71157517 Msa0089520:intron 55.0%
GGCCACTGCAAAACCAACCA+TGG + chr1_2:71157545-71157564 None:intergenic 55.0%
TCCACTGCCTACAGTTGCCT+TGG - chr1_2:71158151-71158170 Msa0089520:intron 55.0%
GTTACGGCCAAGGCAACTGT+AGG + chr1_2:71158161-71158180 None:intergenic 55.0%
ACAGTTGCCTTGGCCGTAAC+AGG - chr1_2:71158161-71158180 Msa0089520:intron 55.0%
! TTGGCCGTAACAGGACTGGT+GGG - chr1_2:71158170-71158189 Msa0089520:intron 55.0%
GACACCCACCAGTCCTGTTA+CGG + chr1_2:71158177-71158196 None:intergenic 55.0%
GCCAAGGCAACTGTAGGCAG+TGG + chr1_2:71158155-71158174 None:intergenic 60.0%
TGCCTTGGCCGTAACAGGAC+TGG - chr1_2:71158166-71158185 Msa0089520:intron 60.0%
CACCAGTCCTGTTACGGCCA+AGG + chr1_2:71158171-71158190 None:intergenic 60.0%
CTTGGCCGTAACAGGACTGG+TGG - chr1_2:71158169-71158188 Msa0089520:intron 60.0%
GCCAAGGCAACTGTAGGCAG+TGG + chr1_2:71158155-71158174 None:intergenic 60.0%
TGCCTTGGCCGTAACAGGAC+TGG - chr1_2:71158166-71158185 Msa0089520:intron 60.0%
CACCAGTCCTGTTACGGCCA+AGG + chr1_2:71158171-71158190 None:intergenic 60.0%
CTTGGCCGTAACAGGACTGG+TGG - chr1_2:71158169-71158188 Msa0089520:intron 60.0%
! ATGGCTTGGCCGGGTAGCCA+TGG - chr1_2:71157525-71157544 Msa0089520:intron 65.0%
CTTGGCCGGGTAGCCATGGT+TGG - chr1_2:71157529-71157548 Msa0089520:intron 65.0%
! ATGGCTTGGCCGGGTAGCCA+TGG - chr1_2:71157525-71157544 Msa0089520:intron 65.0%
CTTGGCCGGGTAGCCATGGT+TGG - chr1_2:71157529-71157548 Msa0089520:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 71156185 71158431 71156185 ID=Msa0089520;Name=Msa0089520
chr1_2 mRNA 71156185 71158431 71156185 ID=Msa0089520-mRNA-1;Parent=Msa0089520;Name=Msa0089520-mRNA-1;_AED=0.27;_eAED=0.27;_QI=130|1|1|1|1|1|4|193|145
chr1_2 exon 71156185 71156482 71156185 ID=Msa0089520-mRNA-1:exon:24508;Parent=Msa0089520-mRNA-1
chr1_2 exon 71157013 71157188 71157013 ID=Msa0089520-mRNA-1:exon:24507;Parent=Msa0089520-mRNA-1
chr1_2 exon 71158036 71158140 71158036 ID=Msa0089520-mRNA-1:exon:24506;Parent=Msa0089520-mRNA-1
chr1_2 exon 71158250 71158431 71158250 ID=Msa0089520-mRNA-1:exon:24505;Parent=Msa0089520-mRNA-1
chr1_2 five_prime_UTR 71158302 71158431 71158302 ID=Msa0089520-mRNA-1:five_prime_utr;Parent=Msa0089520-mRNA-1
chr1_2 CDS 71158250 71158301 71158250 ID=Msa0089520-mRNA-1:cds;Parent=Msa0089520-mRNA-1
chr1_2 CDS 71158036 71158140 71158036 ID=Msa0089520-mRNA-1:cds;Parent=Msa0089520-mRNA-1
chr1_2 CDS 71157013 71157188 71157013 ID=Msa0089520-mRNA-1:cds;Parent=Msa0089520-mRNA-1
chr1_2 CDS 71156378 71156482 71156378 ID=Msa0089520-mRNA-1:cds;Parent=Msa0089520-mRNA-1
chr1_2 three_prime_UTR 71156185 71156377 71156185 ID=Msa0089520-mRNA-1:three_prime_utr;Parent=Msa0089520-mRNA-1
Gene Sequence

>Msa0089520

ATGGCACTTGCTCAAGCTCAAACCTCTGCTTCTCTTTCTGTCTCTCTTCGTGATGCACGTGTTTTCACAACAAGAAACTGCCCTGCAACCTCTGCTCAATTTCCTAAACCAACTTTGGTTCCTGCTAGAGCATCCTTTGCAACTGGTTCCCCACTAATGATCCGGAGCAATCATAAAAGGAAGTTAGCATGCAAAGCAATGCCAGTTTCGATAAGATGCGAGCAAAACACCAAGGATGGGAACGGTTTGGATGTATGGCTTGGCCGGGTAGCCATGGTTGGTTTTGCAGTGGCCATTACTGTTGAAATTACTTCTGGAAAGGGACTCCTAGAGAACTTTGGACTCACAAGTCCACTGCCTACAGTTGCCTTGGCCGTAACAGGACTGGTGGGTGTCTTGACAGCAGTTTTCATCTTCCAGTCAGCCTCAGAGAACTGA

Protein sequence

>Msa0089520

MALAQAQTSASLSVSLRDARVFTTRNCPATSAQFPKPTLVPARASFATGSPLMIRSNHKRKLACKAMPVSIRCEQNTKDGNGLDVWLGRVAMVGFAVAITVEITSGKGLLENFGLTSPLPTVALAVTGLVGVLTAVFIFQSASEN*