Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336750 | XP_024639066.1 | 96.038 | 631 | 22 | 1 | 1 | 631 | 1 | 628 | 0.0 | 1262 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336750 | sp|Q8VXZ5|XG113_ARATH | 73.302 | 633 | 162 | 1 | 5 | 630 | 11 | 643 | 0.0 | 970 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336750 | A0A396HPX4 | 96.038 | 631 | 22 | 1 | 1 | 631 | 1 | 628 | 0.0 | 1262 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0718820 | Msa1336750 | 0.953748 | 1.383134e-111 | -8.615850e-47 |
Msa0839760 | Msa1336750 | 0.960564 | 1.062930e-118 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336750 | MtrunA17_Chr5g0408171 | 96.038 | 631 | 22 | 1 | 1 | 631 | 1 | 628 | 0.0 | 1262 |
Msa1336750 | MtrunA17_Chr8g0369811 | 78.288 | 631 | 135 | 1 | 2 | 630 | 6 | 636 | 0.0 | 1032 |
Msa1336750 | MtrunA17_Chr8g0367951 | 26.772 | 127 | 90 | 1 | 117 | 240 | 389 | 515 | 1.48e-14 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1336750 | AT2G35610.1 | 73.302 | 633 | 162 | 1 | 5 | 630 | 11 | 643 | 0.0 | 970 |
Msa1336750 | AT1G70630.2 | 29.375 | 160 | 109 | 2 | 85 | 240 | 238 | 397 | 3.49e-15 | 79.3 |
Msa1336750 | AT1G70630.1 | 29.375 | 160 | 109 | 2 | 85 | 240 | 238 | 397 | 3.49e-15 | 79.3 |
Msa1336750 | AT1G70630.5 | 29.375 | 160 | 109 | 2 | 85 | 240 | 207 | 366 | 3.77e-15 | 79.0 |
Msa1336750 | AT1G70630.7 | 29.375 | 160 | 109 | 2 | 85 | 240 | 375 | 534 | 5.31e-15 | 79.0 |
Msa1336750 | AT1G70630.6 | 29.375 | 160 | 109 | 2 | 85 | 240 | 444 | 603 | 5.36e-15 | 79.0 |
Msa1336750 | AT1G70630.4 | 29.375 | 160 | 109 | 2 | 85 | 240 | 423 | 582 | 6.24e-15 | 79.0 |
Msa1336750 | AT1G70630.3 | 29.375 | 160 | 109 | 2 | 85 | 240 | 454 | 613 | 6.90e-15 | 79.0 |
Find 191 sgRNAs with CRISPR-Local
Find 482 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGCTTTCTCGACACATTT+TGG | 0.152798 | tig0001315:+31947 | None:intergenic |
AATTATTGGAGGCACTTTAT+TGG | 0.160135 | tig0001315:-31366 | Msa1336750:CDS |
ATGAATCACTGACACATTTA+TGG | 0.176197 | tig0001315:+26795 | None:intergenic |
TGCATACTTGGTAATTAATA+AGG | 0.202143 | tig0001315:+28882 | None:intergenic |
TTGCTTGTAATTAAAATAAT+AGG | 0.226952 | tig0001315:-26556 | Msa1336750:three_prime_UTR |
CTTCTTGCATTGAAGAAAAC+TGG | 0.235009 | tig0001315:+27292 | None:intergenic |
ATGCTCACCAACAAGATAAT+TGG | 0.259758 | tig0001315:+31750 | None:intergenic |
TACTCTCTAAAATCGATATC+AGG | 0.263759 | tig0001315:+27699 | None:intergenic |
AACATTGCAAATTAGAGAAT+TGG | 0.271959 | tig0001315:-26681 | Msa1336750:three_prime_UTR |
TTGTCCAGATGAAACAAATT+AGG | 0.276729 | tig0001315:-28767 | Msa1336750:intron |
TGCAATGGACACAAAATTAT+TGG | 0.280229 | tig0001315:-31380 | Msa1336750:CDS |
CCAGGAGGATTATAGTATTC+AGG | 0.288957 | tig0001315:+29577 | None:intergenic |
TATTTGATGCATTACAATCT+TGG | 0.296555 | tig0001315:+27502 | None:intergenic |
ACATATATTACGATATATAC+TGG | 0.302979 | tig0001315:-27052 | Msa1336750:CDS |
GACATCCTCAACATGGATAA+AGG | 0.307970 | tig0001315:+26766 | None:intergenic |
CCGCTTAGCAACAAGCGTTT+TGG | 0.310588 | tig0001315:+28932 | None:intergenic |
CCTTTGTTGAACCAATTCTT+TGG | 0.316391 | tig0001315:+31867 | None:intergenic |
ATTTGGTAACTATGCATTCA+TGG | 0.333268 | tig0001315:-31818 | Msa1336750:CDS |
TTGATGATAGTCTGGAAGTT+TGG | 0.339802 | tig0001315:-30919 | Msa1336750:CDS |
ATAAACTCCATACTGCCTTT+TGG | 0.344303 | tig0001315:-31241 | Msa1336750:CDS |
TACAGAGTCTGCGATTAAAT+TGG | 0.349125 | tig0001315:-30696 | Msa1336750:CDS |
TCAATGCAAGAAGCATTTAC+AGG | 0.351618 | tig0001315:-27282 | Msa1336750:CDS |
AGCCTCATCTCATATGTTGT+TGG | 0.351863 | tig0001315:+26655 | None:intergenic |
TTAAACACTACACCGGTATA+TGG | 0.355690 | tig0001315:-27103 | Msa1336750:CDS |
ATGTTCATCGAAACACTATA+GGG | 0.371885 | tig0001315:-26945 | Msa1336750:three_prime_UTR |
CATCAAATAATGTAACTGTT+GGG | 0.379007 | tig0001315:-27488 | Msa1336750:CDS |
GTTTAGACTGACCAAAGAAT+TGG | 0.380928 | tig0001315:-31878 | Msa1336750:CDS |
GGAGTTTCCAATTATCTTGT+TGG | 0.383055 | tig0001315:-31757 | Msa1336750:intron |
CAACATCCATGGTGCTCATA+TGG | 0.383723 | tig0001315:+31314 | None:intergenic |
ATTTGATGCATTACAATCTT+GGG | 0.384536 | tig0001315:+27503 | None:intergenic |
TTCTCCAACATTTCATAAGA+TGG | 0.386465 | tig0001315:-31284 | Msa1336750:CDS |
CAGTGATGGATTATCAAGTA+TGG | 0.388316 | tig0001315:+27674 | None:intergenic |
CCGGGATAACGAGCAAGATA+TGG | 0.388736 | tig0001315:+30986 | None:intergenic |
TATGTTCATCGAAACACTAT+AGG | 0.390048 | tig0001315:-26946 | Msa1336750:three_prime_UTR |
CACTATGGTGCAGGATTGAT+AGG | 0.392370 | tig0001315:-28497 | Msa1336750:CDS |
GTTTCCTCATTGCTATGCTT+TGG | 0.396200 | tig0001315:+27450 | None:intergenic |
AACATTATAATAGTTACATT+TGG | 0.397598 | tig0001315:-31835 | Msa1336750:CDS |
TCCTTTGGATCATGTGTTTG+AGG | 0.399480 | tig0001315:-28415 | Msa1336750:intron |
TCATGGACTTTATTCTGACT+TGG | 0.401737 | tig0001315:-31801 | Msa1336750:CDS |
GAACTTCCAGAGGAAGAGTT+TGG | 0.403101 | tig0001315:-27723 | Msa1336750:CDS |
GTTGGTGCGGCCTACAATAT+AGG | 0.429061 | tig0001315:-30737 | Msa1336750:CDS |
AACAGTTGTTGATGATAGTC+TGG | 0.434242 | tig0001315:-30927 | Msa1336750:CDS |
GGTCAGTCTAAACTCTTTCA+AGG | 0.435148 | tig0001315:+31888 | None:intergenic |
TTTAGGTCATGCCTCCACTA+TGG | 0.437519 | tig0001315:-28512 | Msa1336750:intron |
TTGTGGCAGATGATAAGATA+TGG | 0.442083 | tig0001315:-30652 | Msa1336750:CDS |
GCATACTTGGTAATTAATAA+GGG | 0.442561 | tig0001315:+28883 | None:intergenic |
CGAGGAGGAACATTCAAAAC+AGG | 0.443521 | tig0001315:+31928 | None:intergenic |
TGGAGGCACTTTATTGGAAA+GGG | 0.444183 | tig0001315:-31360 | Msa1336750:CDS |
GATATTGTCCACAGAGAGTT+GGG | 0.444371 | tig0001315:-30611 | Msa1336750:CDS |
TCAGAAGTTTGAGGAGGGAT+TGG | 0.448194 | tig0001315:+27008 | None:intergenic |
CCATATCTTGCTCGTTATCC+CGG | 0.452515 | tig0001315:-30986 | Msa1336750:CDS |
TTCGACACCAAAAGGCAGTA+TGG | 0.454549 | tig0001315:+31234 | None:intergenic |
CTCTGGAAGTTCATTTAACA+TGG | 0.457114 | tig0001315:+27734 | None:intergenic |
GGAGGGATTGGCTTCCATCC+AGG | 0.457361 | tig0001315:+27020 | None:intergenic |
GCATCAAATAATGTAACTGT+TGG | 0.458070 | tig0001315:-27489 | Msa1336750:CDS |
CCACTGCAAAAGATACTTGA+AGG | 0.465347 | tig0001315:+30521 | None:intergenic |
CTTCTACAACCTCTTCAGCT+TGG | 0.465576 | tig0001315:-33139 | Msa1336750:CDS |
ACATCCTCAACATGGATAAA+GGG | 0.468668 | tig0001315:+26767 | None:intergenic |
GGATGTTAAAACATCTGCTC+CGG | 0.469326 | tig0001315:+30967 | None:intergenic |
CAAAGAATTGGTTCAACAAA+GGG | 0.478416 | tig0001315:-31866 | Msa1336750:CDS |
TCTCCAACATTTCATAAGAT+GGG | 0.482806 | tig0001315:-31283 | Msa1336750:CDS |
AGGCTATGGTTTCCCCATCC+AGG | 0.483154 | tig0001315:-28477 | Msa1336750:CDS |
TCAGGGCCAAACTCTTCCTC+TGG | 0.484951 | tig0001315:+27717 | None:intergenic |
ACTTTATTGGAAAGGGGTAC+CGG | 0.488262 | tig0001315:-31353 | Msa1336750:CDS |
TACTGACATGGTTTGGTTGA+AGG | 0.488688 | tig0001315:-31197 | Msa1336750:intron |
CATGGACTTTATTCTGACTT+GGG | 0.489839 | tig0001315:-31800 | Msa1336750:CDS |
CGATTAAATTGGCAAAGGAA+TGG | 0.490912 | tig0001315:-30685 | Msa1336750:CDS |
TGTGTGATACTGACATGGTT+TGG | 0.491270 | tig0001315:-31204 | Msa1336750:CDS |
GGATGTCAGTACTTAGTTGA+GGG | 0.492243 | tig0001315:-26750 | Msa1336750:three_prime_UTR |
AGTCTGGAAGTTTGGAAAGA+AGG | 0.492974 | tig0001315:-30911 | Msa1336750:intron |
CTCCCCATCTTATGAAATGT+TGG | 0.493611 | tig0001315:+31280 | None:intergenic |
ATAAGATATGGGATCAGAAT+GGG | 0.494577 | tig0001315:-30640 | Msa1336750:CDS |
ATAAAAGGGTTACTTGAAAG+AGG | 0.496404 | tig0001315:+33104 | None:intergenic |
TTATGATGGAAATCTAAAGC+TGG | 0.498264 | tig0001315:-30552 | Msa1336750:CDS |
TGTTGGTATAACTTGATCAC+TGG | 0.499076 | tig0001315:+30946 | None:intergenic |
TTAACCTCTGAGGGCAGTGA+TGG | 0.499809 | tig0001315:+27660 | None:intergenic |
ATCAACAGTTCGACACCAAA+AGG | 0.500021 | tig0001315:+31226 | None:intergenic |
CCCCTTCAAAACACCTGGAT+GGG | 0.500946 | tig0001315:+28464 | None:intergenic |
GATGTTCACCTCTGTAAAGA+AGG | 0.504544 | tig0001315:-27528 | Msa1336750:CDS |
ACTGCACAATGAAGAGAAGA+AGG | 0.505529 | tig0001315:+33318 | None:intergenic |
TGAGCACCATGGATGTTGGC+TGG | 0.508658 | tig0001315:-31309 | Msa1336750:CDS |
TGATATTGTCCACAGAGAGT+TGG | 0.510495 | tig0001315:-30612 | Msa1336750:CDS |
GATAAGATATGGGATCAGAA+TGG | 0.511259 | tig0001315:-30641 | Msa1336750:CDS |
GGTGCAGGATTGATAGGCTA+TGG | 0.512598 | tig0001315:-28491 | Msa1336750:CDS |
TCATGCCTCCACTATGGTGC+AGG | 0.513667 | tig0001315:-28506 | Msa1336750:CDS |
ATCAAATAATGTAACTGTTG+GGG | 0.514600 | tig0001315:-27487 | Msa1336750:CDS |
GTTAAGCAATTGAATGATCT+CGG | 0.516251 | tig0001315:-31778 | Msa1336750:CDS |
TTGGAGGCACTTTATTGGAA+AGG | 0.518007 | tig0001315:-31361 | Msa1336750:CDS |
AATGTTGTGTGCACTGCATA+TGG | 0.519394 | tig0001315:+29664 | None:intergenic |
AGGGTATGTATCAGCAACTC+AGG | 0.520087 | tig0001315:-29693 | Msa1336750:CDS |
CACACAACATTTCAATATGC+AGG | 0.521713 | tig0001315:-29652 | Msa1336750:CDS |
TATATCGTAATATATGTGAC+CGG | 0.524119 | tig0001315:+27058 | None:intergenic |
TATAGTATTCAGGTGGGTCA+TGG | 0.526762 | tig0001315:+29587 | None:intergenic |
AAAGCATAGCAATGAGGAAA+CGG | 0.527987 | tig0001315:-27448 | Msa1336750:intron |
ATCTACACTGTTGTCATCGT+TGG | 0.528331 | tig0001315:-33206 | Msa1336750:CDS |
TAAATTGGCAAAGGAATGGA+TGG | 0.528455 | tig0001315:-30681 | Msa1336750:CDS |
GCTAGAAGTTTCTATTCAAG+AGG | 0.528803 | tig0001315:-26590 | Msa1336750:three_prime_UTR |
TCACCAGTGTTCTGTTCAGA+AGG | 0.530066 | tig0001315:+28724 | None:intergenic |
TGATCCAAAGGACAGAGAAA+AGG | 0.530345 | tig0001315:+28426 | None:intergenic |
TCATTGTGCAGTGAAAATCA+TGG | 0.530386 | tig0001315:-33307 | Msa1336750:five_prime_UTR |
ATATACTGGGATGAGAAACC+TGG | 0.532396 | tig0001315:-27038 | Msa1336750:CDS |
AATTTAATCGCAGACTCTGT+AGG | 0.534019 | tig0001315:+30698 | None:intergenic |
CCACAGAGAGTTGGGACCAT+CGG | 0.535254 | tig0001315:-30603 | Msa1336750:CDS |
CATCTTCAGAAGTTTGAGGA+GGG | 0.537277 | tig0001315:+27003 | None:intergenic |
AAAAGAGGACCAAGCTGAAG+AGG | 0.545642 | tig0001315:+33130 | None:intergenic |
TTTCAATATGCAGGCACAGA+AGG | 0.546523 | tig0001315:-29643 | Msa1336750:CDS |
GTCAGTCTAAACTCTTTCAA+GGG | 0.548005 | tig0001315:+31889 | None:intergenic |
TCTTAGTCTTCACAACGAGT+TGG | 0.548375 | tig0001315:+26880 | None:intergenic |
AGACTATCATCAACAACTGT+TGG | 0.549115 | tig0001315:+30929 | None:intergenic |
TGTGTGACCGATCACACTCC+CGG | 0.550835 | tig0001315:-27077 | Msa1336750:CDS |
GAGCACCATGGATGTTGGCT+GGG | 0.551672 | tig0001315:-31308 | Msa1336750:CDS |
CTGACACATTTATGGACACC+GGG | 0.551803 | tig0001315:+26803 | None:intergenic |
TACGCCCTTTATCCATGTTG+AGG | 0.554675 | tig0001315:-26771 | Msa1336750:three_prime_UTR |
CCTGAATACTATAATCCTCC+TGG | 0.555188 | tig0001315:-29577 | Msa1336750:intron |
ACACTTATTGAAGTCATGCC+CGG | 0.556796 | tig0001315:-26821 | Msa1336750:three_prime_UTR |
TATGATGGAAATCTAAAGCT+GGG | 0.556906 | tig0001315:-30551 | Msa1336750:CDS |
GTGTAGATCGTGAGGAAGAG+AGG | 0.558247 | tig0001315:+33221 | None:intergenic |
CATAAACAGAAGATATTGAA+AGG | 0.558328 | tig0001315:-26914 | Msa1336750:three_prime_UTR |
TATGTGACCGGGAGTGTGAT+CGG | 0.558850 | tig0001315:+27070 | None:intergenic |
CTAAGCGGAAAGCATACCAT+TGG | 0.560834 | tig0001315:-28917 | Msa1336750:CDS |
TATGTATCAGCAACTCAGGT+TGG | 0.561264 | tig0001315:-29689 | Msa1336750:CDS |
ACTTGAAAGAGGAGGAAAAG+AGG | 0.562823 | tig0001315:+33115 | None:intergenic |
ACCCCTTCAAAACACCTGGA+TGG | 0.563163 | tig0001315:+28463 | None:intergenic |
AAGGGTAAAATGTGATCCAA+TGG | 0.568807 | tig0001315:+28901 | None:intergenic |
TGATCATCTTCAGAAGTTTG+AGG | 0.571519 | tig0001315:+26999 | None:intergenic |
AGCACCATGGATGTTGGCTG+GGG | 0.572999 | tig0001315:-31307 | Msa1336750:CDS |
AGGATGTCAGTACTTAGTTG+AGG | 0.574833 | tig0001315:-26751 | Msa1336750:three_prime_UTR |
CCCTTCAAAACACCTGGATG+GGG | 0.576084 | tig0001315:+28465 | None:intergenic |
GATGTTAAAACATCTGCTCC+GGG | 0.576359 | tig0001315:+30968 | None:intergenic |
CTGAAGATGATCACCCACCT+TGG | 0.580153 | tig0001315:-26989 | Msa1336750:CDS |
ACCTCAAACACATGATCCAA+AGG | 0.580442 | tig0001315:+28414 | None:intergenic |
TGACATTTATTAACCTCTGA+GGG | 0.581541 | tig0001315:+27651 | None:intergenic |
ACTGACACATTTATGGACAC+CGG | 0.582245 | tig0001315:+26802 | None:intergenic |
CCAAAGAATTGGTTCAACAA+AGG | 0.582324 | tig0001315:-31867 | Msa1336750:CDS |
ACTCTCTAAAATCGATATCA+GGG | 0.584688 | tig0001315:+27700 | None:intergenic |
TTGACATTTATTAACCTCTG+AGG | 0.585437 | tig0001315:+27650 | None:intergenic |
TAACGAGCAAGATATGGAAG+TGG | 0.588038 | tig0001315:+30992 | None:intergenic |
TGTGGCAGATGATAAGATAT+GGG | 0.588167 | tig0001315:-30651 | Msa1336750:CDS |
CTCCAACATTTCATAAGATG+GGG | 0.588837 | tig0001315:-31282 | Msa1336750:CDS |
AACATTTCATAAGATGGGGA+GGG | 0.590957 | tig0001315:-31278 | Msa1336750:CDS |
CATATATTACGATATATACT+GGG | 0.592955 | tig0001315:-27051 | Msa1336750:CDS |
CAACATTTCATAAGATGGGG+AGG | 0.592995 | tig0001315:-31279 | Msa1336750:CDS |
GGAGGATTATAGTATTCAGG+TGG | 0.593240 | tig0001315:+29580 | None:intergenic |
CTTGGGTTCCTTCTTTACAG+AGG | 0.594617 | tig0001315:+27520 | None:intergenic |
GAAATTGACCTCACCAAGGT+GGG | 0.595017 | tig0001315:+26976 | None:intergenic |
ATAGACCCCTTCAAAACACC+TGG | 0.595066 | tig0001315:+28459 | None:intergenic |
ATTTACAGGTTTCAAAGACA+AGG | 0.595211 | tig0001315:-27268 | Msa1336750:intron |
TGTAGAAGAATAGTGTATAG+CGG | 0.596162 | tig0001315:+33154 | None:intergenic |
CTATCAATCCTGCACCATAG+TGG | 0.596448 | tig0001315:+28498 | None:intergenic |
CCAAAACGCTTGTTGCTAAG+CGG | 0.599022 | tig0001315:-28932 | Msa1336750:CDS |
CATATGAGCACCATGGATGT+TGG | 0.603158 | tig0001315:-31313 | Msa1336750:CDS |
AATGGACACAAAATTATTGG+AGG | 0.604541 | tig0001315:-31377 | Msa1336750:CDS |
AGAACCCCAGCCAACATCCA+TGG | 0.605293 | tig0001315:+31303 | None:intergenic |
GTCTCATTGAATAGTTGGTG+CGG | 0.605394 | tig0001315:-30750 | Msa1336750:intron |
GTCTGCGATTAAATTGGCAA+AGG | 0.607208 | tig0001315:-30690 | Msa1336750:CDS |
TTCCCTTCTGAACAGAACAC+TGG | 0.608871 | tig0001315:-28727 | Msa1336750:intron |
GGAGGCACTTTATTGGAAAG+GGG | 0.609745 | tig0001315:-31359 | Msa1336750:CDS |
GGTCACACAACACCATATAC+CGG | 0.614742 | tig0001315:+27091 | None:intergenic |
CCGATGGTCCCAACTCTCTG+TGG | 0.615254 | tig0001315:+30603 | None:intergenic |
ATTTCCAAAGCATAGCAATG+AGG | 0.615304 | tig0001315:-27454 | Msa1336750:CDS |
AAAGCATGGCTTCTCGTAGT+CGG | 0.615395 | tig0001315:+29611 | None:intergenic |
AACGAGCAAGATATGGAAGT+GGG | 0.615612 | tig0001315:+30993 | None:intergenic |
CACCAGTGTTCTGTTCAGAA+GGG | 0.620203 | tig0001315:+28725 | None:intergenic |
CCACTGTCCTCGTCAACCGA+TGG | 0.622308 | tig0001315:+30587 | None:intergenic |
GGAATGGATGGAACTGCTTG+TGG | 0.631261 | tig0001315:-30669 | Msa1336750:CDS |
TCATCTTCAGAAGTTTGAGG+AGG | 0.634318 | tig0001315:+27002 | None:intergenic |
TCAAATAATGTAACTGTTGG+GGG | 0.638239 | tig0001315:-27486 | Msa1336750:CDS |
AGGTGGGTCATGGAAAAGCA+TGG | 0.640006 | tig0001315:+29597 | None:intergenic |
TCAATCCTGCACCATAGTGG+AGG | 0.641393 | tig0001315:+28501 | None:intergenic |
AAAGGGTTACTTGAAAGAGG+AGG | 0.644273 | tig0001315:+33107 | None:intergenic |
ATATCGTAATATATGTGACC+GGG | 0.644860 | tig0001315:+27059 | None:intergenic |
GTTGGGACCATCGGTTGACG+AGG | 0.646860 | tig0001315:-30594 | Msa1336750:CDS |
TGAAATTGACCTCACCAAGG+TGG | 0.650431 | tig0001315:+26975 | None:intergenic |
TGTTCATCGAAACACTATAG+GGG | 0.651954 | tig0001315:-26944 | Msa1336750:three_prime_UTR |
AAGTACTGACATCCTCAACA+TGG | 0.653072 | tig0001315:+26759 | None:intergenic |
AACCAACAACATATGAGATG+AGG | 0.654141 | tig0001315:-26657 | Msa1336750:three_prime_UTR |
ACTGGGATGAGAAACCTGGA+TGG | 0.657363 | tig0001315:-27034 | Msa1336750:CDS |
GATGATCACCCACCTTGGTG+AGG | 0.658622 | tig0001315:-26984 | Msa1336750:exon |
TAATCCATCACTGCCCTCAG+AGG | 0.663209 | tig0001315:-27664 | Msa1336750:intron |
CCATCGGTTGACGAGGACAG+TGG | 0.663505 | tig0001315:-30587 | Msa1336750:CDS |
AGTCTAAACTCTTTCAAGGG+TGG | 0.663897 | tig0001315:+31892 | None:intergenic |
TTGGAGCTCAGGGAAAGCAG+AGG | 0.666154 | tig0001315:+31966 | None:intergenic |
GCATGGCTTCTCGTAGTCGG+TGG | 0.666555 | tig0001315:+29614 | None:intergenic |
TGACAACAGTGTAGATCGTG+AGG | 0.668405 | tig0001315:+33213 | None:intergenic |
AAACGACTTAAACACTACAC+CGG | 0.668427 | tig0001315:-27110 | Msa1336750:CDS |
CATGTTAAATGAACTTCCAG+AGG | 0.669463 | tig0001315:-27733 | Msa1336750:CDS |
GTTGATGTGTGATACTGACA+TGG | 0.689315 | tig0001315:-31209 | Msa1336750:CDS |
GAGGATTATAGTATTCAGGT+GGG | 0.690958 | tig0001315:+29581 | None:intergenic |
GAACAGCCATATGAGCACCA+TGG | 0.702964 | tig0001315:-31320 | Msa1336750:CDS |
AAACAGAAGATATTGAAAGG+CGG | 0.715428 | tig0001315:-26911 | Msa1336750:three_prime_UTR |
TTCTGAAATTGACCTCACCA+AGG | 0.719723 | tig0001315:+26972 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTGTAAAAGATTTAAAA+TGG | - | tig0001315:26633-26652 | Msa1336750:three_prime_UTR | 10.0% |
!! | TTATAATCAAACATATATTA+AGG | + | tig0001315:29029-29048 | None:intergenic | 10.0% |
!! | AAAAAAAACTAAAAAAAGAT+AGG | - | tig0001315:30361-30380 | Msa1336750:intron | 10.0% |
!! | AAAAAAACTAAAAAAAGATA+GGG | - | tig0001315:30362-30381 | Msa1336750:intron | 10.0% |
!!! | TTTGGATTAAATCTTTTTTT+TGG | + | tig0001315:26728-26747 | None:intergenic | 15.0% |
!! | ACTAAATTATTGATGTATAT+TGG | + | tig0001315:26814-26833 | None:intergenic | 15.0% |
!! | AATATACATCAATAATTTAG+TGG | - | tig0001315:26813-26832 | Msa1336750:three_prime_UTR | 15.0% |
!! | ATGTAAAATAGAATAAAAAG+AGG | + | tig0001315:27113-27132 | None:intergenic | 15.0% |
!!! | TACATATCAAATTCTAAAAA+GGG | + | tig0001315:27212-27231 | None:intergenic | 15.0% |
!!! | ATACATATCAAATTCTAAAA+AGG | + | tig0001315:27213-27232 | None:intergenic | 15.0% |
!! | TATTAACGATACATTATAAA+CGG | + | tig0001315:27495-27514 | None:intergenic | 15.0% |
!!! | TTTAATTAGTATGCATTTTT+TGG | - | tig0001315:27566-27585 | Msa1336750:intron | 15.0% |
!! | TAATGATTAAAATGTAGTAA+TGG | + | tig0001315:27963-27982 | None:intergenic | 15.0% |
!! | AACATTATAATAGTTACATT+TGG | - | tig0001315:28351-28370 | Msa1336750:intron | 15.0% |
!! | ATAAACAACTAATTAAAAGA+AGG | + | tig0001315:28751-28770 | None:intergenic | 15.0% |
!!! | AATCAAATAATGGAATATTT+AGG | + | tig0001315:29162-29181 | None:intergenic | 15.0% |
!! | AATATTCCATTATTTGATTA+TGG | - | tig0001315:29163-29182 | Msa1336750:intron | 15.0% |
!!! | TAATAATTGAAGGATAATTT+TGG | + | tig0001315:30837-30856 | None:intergenic | 15.0% |
!! | TTAATTCTCTTCATTTAATT+AGG | - | tig0001315:30879-30898 | Msa1336750:intron | 15.0% |
!! | TAATTCTCTTCATTTAATTA+GGG | - | tig0001315:30880-30899 | Msa1336750:intron | 15.0% |
!!! | AAACATTTATTTTCATGAAA+AGG | + | tig0001315:31161-31180 | None:intergenic | 15.0% |
!!! | AAATGTTTTAATTTTTTTCC+AGG | - | tig0001315:31203-31222 | Msa1336750:CDS | 15.0% |
!!! | AATGTTTTAATTTTTTTCCA+GGG | - | tig0001315:31204-31223 | Msa1336750:CDS | 15.0% |
!! | AGTTCTTTATGTATATATTT+AGG | - | tig0001315:31657-31676 | Msa1336750:intron | 15.0% |
!! | TTATTCAAATAAACTGAAAA+CGG | + | tig0001315:31964-31983 | None:intergenic | 15.0% |
!!! | TCATTGTTTTAAATTTTGAT+TGG | + | tig0001315:32563-32582 | None:intergenic | 15.0% |
!! | GATTAAAATAAATAAATGCA+TGG | + | tig0001315:33033-33052 | None:intergenic | 15.0% |
!!! | TGCATTTATTTATTTTAATC+AGG | - | tig0001315:33033-33052 | Msa1336750:intron | 15.0% |
!!! | TTATTTATTTTAATCAGGAA+AGG | - | tig0001315:33038-33057 | Msa1336750:intron | 15.0% |
!!! | TATTTATTTTAATCAGGAAA+GGG | - | tig0001315:33039-33058 | Msa1336750:intron | 15.0% |
!! | TTGCTTGTAATTAAAATAAT+AGG | - | tig0001315:33630-33649 | Msa1336750:intron | 15.0% |
!! | AATGGAAGTAAAATTATACA+AGG | - | tig0001315:26651-26670 | Msa1336750:three_prime_UTR | 20.0% |
!!! | TAAATCTTTTTTTTGGTCAA+AGG | + | tig0001315:26721-26740 | None:intergenic | 20.0% |
!!! | TATCTTTTTTTGTTAGTTGT+TGG | - | tig0001315:27165-27184 | Msa1336750:intron | 20.0% |
!!! | TTGAAACTTGAAAATTGTTT+TGG | - | tig0001315:27276-27295 | Msa1336750:CDS | 20.0% |
!!! | TTTATGTTTCTTTTGAGAAA+TGG | - | tig0001315:27526-27545 | Msa1336750:CDS | 20.0% |
!!! | ATGCATTTTTTGGTATAAAA+AGG | - | tig0001315:27576-27595 | Msa1336750:intron | 20.0% |
!!! | TATAAAAAGGTTTAGTTTAC+TGG | - | tig0001315:27589-27608 | Msa1336750:intron | 20.0% |
!! | ATTTAGAAATAACTGCAAAT+TGG | - | tig0001315:27724-27743 | Msa1336750:CDS | 20.0% |
!!! | AAATGTAGTAATGGAAATTT+TGG | + | tig0001315:27954-27973 | None:intergenic | 20.0% |
!! | ATCAAACATATATTAAGGAA+TGG | + | tig0001315:29024-29043 | None:intergenic | 20.0% |
!! | AGGAATATAATATATCTTAG+AGG | + | tig0001315:29142-29161 | None:intergenic | 20.0% |
!! | ATGAAAAATTCCTATATTGT+AGG | + | tig0001315:29462-29481 | None:intergenic | 20.0% |
!!! | ACAATATAGGAATTTTTCAT+TGG | - | tig0001315:29462-29481 | Msa1336750:intron | 20.0% |
!! | ATTGTATAAGAGAAATCAAA+AGG | + | tig0001315:29763-29782 | None:intergenic | 20.0% |
!!! | TCCTTTCATATTATGATTTT+AGG | - | tig0001315:30473-30492 | Msa1336750:intron | 20.0% |
!!! | CCTTTCATATTATGATTTTA+GGG | - | tig0001315:30474-30493 | Msa1336750:intron | 20.0% |
!! | ATTATCCTTCAATTATTAAG+AGG | - | tig0001315:30839-30858 | Msa1336750:intron | 20.0% |
!! | TTATCCTTCAATTATTAAGA+GGG | - | tig0001315:30840-30859 | Msa1336750:intron | 20.0% |
!! | AATTCTCTTCATTTAATTAG+GGG | - | tig0001315:30881-30900 | Msa1336750:intron | 20.0% |
!!! | AATTTGATGAGTCTTATAAA+AGG | - | tig0001315:30937-30956 | Msa1336750:CDS | 20.0% |
!!! | ATTTGATGAGTCTTATAAAA+GGG | - | tig0001315:30938-30957 | Msa1336750:CDS | 20.0% |
!!! | ATTAAAACATTTAGTTCCAA+TGG | + | tig0001315:31195-31214 | None:intergenic | 20.0% |
!!! | ATGTTTTAATTTTTTTCCAG+GGG | - | tig0001315:31205-31224 | Msa1336750:CDS | 20.0% |
!! | AACATAAGTGAATAACAATA+AGG | + | tig0001315:31826-31845 | None:intergenic | 20.0% |
!! | TTAATAAAGGATTATTATGC+CGG | - | tig0001315:31861-31880 | Msa1336750:CDS | 20.0% |
!! | TTTCTCCATAAAAACATAAT+TGG | + | tig0001315:32036-32055 | None:intergenic | 20.0% |
!! | TTATTCAACTCCAAATATAA+GGG | + | tig0001315:32295-32314 | None:intergenic | 20.0% |
!!! | ATTTTTATCCATTTAACTGT+TGG | - | tig0001315:32769-32788 | Msa1336750:intron | 20.0% |
!!! | TTTTTATCCATTTAACTGTT+GGG | - | tig0001315:32770-32789 | Msa1336750:intron | 20.0% |
!! | ACATATATTACGATATATAC+TGG | - | tig0001315:33134-33153 | Msa1336750:CDS | 20.0% |
!! | CATATATTACGATATATACT+GGG | - | tig0001315:33135-33154 | Msa1336750:CDS | 20.0% |
!!! | ACTTTTTTTTCTTTTCAAAC+AGG | - | tig0001315:33670-33689 | Msa1336750:intron | 20.0% |
!! | GATGTTGAGACATAAATTTT+TGG | + | tig0001315:26746-26765 | None:intergenic | 25.0% |
!!! | AGAATCAGAAATTTTTCAGA+TGG | - | tig0001315:26916-26935 | Msa1336750:three_prime_UTR | 25.0% |
! | AAAAAGAGGTAGAGATAAAA+GGG | + | tig0001315:27099-27118 | None:intergenic | 25.0% |
! | TAAAAAGAGGTAGAGATAAA+AGG | + | tig0001315:27100-27119 | None:intergenic | 25.0% |
!!! | TTACATGCATTTTAATCAAG+TGG | - | tig0001315:27127-27146 | Msa1336750:CDS | 25.0% |
!!! | TACATGCATTTTAATCAAGT+GGG | - | tig0001315:27128-27147 | Msa1336750:CDS | 25.0% |
! | ATTTGATATGTATTGTTGTC+AGG | - | tig0001315:27220-27239 | Msa1336750:intron | 25.0% |
! | TCTAAATTACAGTTACAAAG+TGG | + | tig0001315:27711-27730 | None:intergenic | 25.0% |
!!! | TCAAAACTCTTTTGAGAAAA+GGG | + | tig0001315:27803-27822 | None:intergenic | 25.0% |
!!! | ATCAAAACTCTTTTGAGAAA+AGG | + | tig0001315:27804-27823 | None:intergenic | 25.0% |
!! | AAAATTACACTGATGGTTTT+TGG | - | tig0001315:27855-27874 | Msa1336750:intron | 25.0% |
!! | AAATTACACTGATGGTTTTT+GGG | - | tig0001315:27856-27875 | Msa1336750:intron | 25.0% |
! | CAAAAGAAATGAAGAAATAG+AGG | + | tig0001315:28095-28114 | None:intergenic | 25.0% |
!!! | CTATTTCTTCATTTCTTTTG+TGG | - | tig0001315:28095-28114 | Msa1336750:intron | 25.0% |
! | TTTGTATAGTTGATTAGACT+AGG | - | tig0001315:28528-28547 | Msa1336750:intron | 25.0% |
! | TTGTATAGTTGATTAGACTA+GGG | - | tig0001315:28529-28548 | Msa1336750:intron | 25.0% |
! | TTATTTCCTTAAAACTCTCT+AGG | - | tig0001315:28616-28635 | Msa1336750:intron | 25.0% |
! | ACTTATCATATAAGTGCTTA+CGG | + | tig0001315:28708-28727 | None:intergenic | 25.0% |
! | GATAAGTGTTTATGCTAAAA+CGG | - | tig0001315:28721-28740 | Msa1336750:intron | 25.0% |
! | AATTCAAATTCACTACTGTT+TGG | + | tig0001315:28774-28793 | None:intergenic | 25.0% |
!! | GAATTTGAATTCTACCTTTT+AGG | - | tig0001315:28783-28802 | Msa1336750:intron | 25.0% |
!!! | CACATTTTACGTTTTGAATT+TGG | + | tig0001315:29097-29116 | None:intergenic | 25.0% |
! | CAAATTCAAAACGTAAAATG+TGG | - | tig0001315:29095-29114 | Msa1336750:intron | 25.0% |
! | AGTATTCAAAACTGTTAACT+AGG | + | tig0001315:29716-29735 | None:intergenic | 25.0% |
! | ATACAATTAAGTATCTCTGA+AGG | - | tig0001315:29776-29795 | Msa1336750:intron | 25.0% |
! | TACGTCTAATTGAGTATTTA+AGG | - | tig0001315:29856-29875 | Msa1336750:intron | 25.0% |
! | ACGTCTAATTGAGTATTTAA+GGG | - | tig0001315:29857-29876 | Msa1336750:intron | 25.0% |
! | TCTTAAAAGCTAGTTATCAA+GGG | + | tig0001315:30339-30358 | None:intergenic | 25.0% |
! | ATCTTAAAAGCTAGTTATCA+AGG | + | tig0001315:30340-30359 | None:intergenic | 25.0% |
! | ATACTTATCAAAGTCTTGAT+TGG | - | tig0001315:30401-30420 | Msa1336750:intron | 25.0% |
! | TAATATGAAAGGACATTCTT+AGG | + | tig0001315:30466-30485 | None:intergenic | 25.0% |
! | CCCTAAAATCATAATATGAA+AGG | + | tig0001315:30477-30496 | None:intergenic | 25.0% |
! | AGAAAAATAATATTACCAGG+AGG | + | tig0001315:30627-30646 | None:intergenic | 25.0% |
! | GGAAGAAAAATAATATTACC+AGG | + | tig0001315:30630-30649 | None:intergenic | 25.0% |
!! | ATTCTTGTGCATTTTATCAA+GGG | + | tig0001315:30764-30783 | None:intergenic | 25.0% |
!! | AATTCTTGTGCATTTTATCA+AGG | + | tig0001315:30765-30784 | None:intergenic | 25.0% |
! | ATAAGACTCATCAAATTTCA+AGG | + | tig0001315:30934-30953 | None:intergenic | 25.0% |
!! | TTTGATGAGTCTTATAAAAG+GGG | - | tig0001315:30939-30958 | Msa1336750:CDS | 25.0% |
!!! | TGTTTTAATTTTTTTCCAGG+GGG | - | tig0001315:31206-31225 | Msa1336750:CDS | 25.0% |
!! | GCATACTTGGTAATTAATAA+GGG | + | tig0001315:31306-31325 | None:intergenic | 25.0% |
!! | TGCATACTTGGTAATTAATA+AGG | + | tig0001315:31307-31326 | None:intergenic | 25.0% |
! | TCAAAAATACAGAAGTGAAA+AGG | + | tig0001315:31344-31363 | None:intergenic | 25.0% |
!!! | TTCACTTCTGTATTTTTGAA+TGG | - | tig0001315:31345-31364 | Msa1336750:CDS | 25.0% |
!! | TTGTTATTCACTTATGTTTC+AGG | - | tig0001315:31828-31847 | Msa1336750:CDS | 25.0% |
! | TCCATAAAAACATAATTGGT+GGG | + | tig0001315:32032-32051 | None:intergenic | 25.0% |
! | TAATTTAGTGCTTACTCAAT+AGG | + | tig0001315:32149-32168 | None:intergenic | 25.0% |
! | TATTCAACTCCAAATATAAG+GGG | + | tig0001315:32294-32313 | None:intergenic | 25.0% |
! | CTTATTCAACTCCAAATATA+AGG | + | tig0001315:32296-32315 | None:intergenic | 25.0% |
!! | CATTTTATAGCAGCATAATA+AGG | + | tig0001315:32412-32431 | None:intergenic | 25.0% |
! | TATAAAATGTACTCTATTGC+AGG | - | tig0001315:32423-32442 | Msa1336750:intron | 25.0% |
! | ATTTGATGCATTACAATCTT+GGG | + | tig0001315:32686-32705 | None:intergenic | 25.0% |
! | TATTTGATGCATTACAATCT+TGG | + | tig0001315:32687-32706 | None:intergenic | 25.0% |
! | CATCAAATAATGTAACTGTT+GGG | - | tig0001315:32698-32717 | Msa1336750:intron | 25.0% |
! | ATCAAATAATGTAACTGTTG+GGG | - | tig0001315:32699-32718 | Msa1336750:intron | 25.0% |
!! | TTTTATCCATTTAACTGTTG+GGG | - | tig0001315:32771-32790 | Msa1336750:intron | 25.0% |
! | TATATCGTAATATATGTGAC+CGG | + | tig0001315:33131-33150 | None:intergenic | 25.0% |
! | CATAAACAGAAGATATTGAA+AGG | - | tig0001315:33272-33291 | Msa1336750:exon | 25.0% |
! | AACATTGCAAATTAGAGAAT+TGG | - | tig0001315:33505-33524 | Msa1336750:intron | 25.0% |
!!! | AGAAAAAAAAGTGCTACATT+CGG | + | tig0001315:33662-33681 | None:intergenic | 25.0% |
! | TATAGCGGAAAAAACGTATA+AGG | + | tig0001315:27020-27039 | None:intergenic | 30.0% |
TGTAGAAGAATAGTGTATAG+CGG | + | tig0001315:27035-27054 | None:intergenic | 30.0% | |
ATAAAAGGGTTACTTGAAAG+AGG | + | tig0001315:27085-27104 | None:intergenic | 30.0% | |
!!! | GTTGTTGGTTTTGTCATAAA+TGG | - | tig0001315:27180-27199 | Msa1336750:intron | 30.0% |
!! | TTAGGATAGGATTAGTTAGT+TGG | - | tig0001315:27245-27264 | Msa1336750:intron | 30.0% |
!!! | CTTGAAAATTGTTTTGGCAT+TGG | - | tig0001315:27282-27301 | Msa1336750:CDS | 30.0% |
!!! | TGGCATTGGTTTTTAATGTA+TGG | - | tig0001315:27296-27315 | Msa1336750:CDS | 30.0% |
GAAATGTCGTAAATTCTCAT+TGG | + | tig0001315:27679-27698 | None:intergenic | 30.0% | |
! | AGTTACAAAGTGGACTTATA+TGG | + | tig0001315:27701-27720 | None:intergenic | 30.0% |
TAGAAATAACTGCAAATTGG+TGG | - | tig0001315:27727-27746 | Msa1336750:CDS | 30.0% | |
!! | CAAAACTCTTTTGAGAAAAG+GGG | + | tig0001315:27802-27821 | None:intergenic | 30.0% |
TGATGAAATATGATTGCATG+CGG | - | tig0001315:27827-27846 | Msa1336750:intron | 30.0% | |
GGCTAAAAAAATTACACTGA+TGG | - | tig0001315:27848-27867 | Msa1336750:intron | 30.0% | |
ATCAACTACACTAATAAAGC+AGG | + | tig0001315:27993-28012 | None:intergenic | 30.0% | |
! | CTTTTCAATTCATCAAGCAT+TGG | - | tig0001315:28060-28079 | Msa1336750:intron | 30.0% |
AGAAATGAAGAAATAGAGGA+AGG | + | tig0001315:28091-28110 | None:intergenic | 30.0% | |
! | CAAAGAATTGGTTCAACAAA+GGG | - | tig0001315:28320-28339 | Msa1336750:intron | 30.0% |
! | ATTTGGTAACTATGCATTCA+TGG | - | tig0001315:28368-28387 | Msa1336750:intron | 30.0% |
GTTAAGCAATTGAATGATCT+CGG | - | tig0001315:28408-28427 | Msa1336750:intron | 30.0% | |
TCAAATAAGCCAATTGAAAC+AGG | + | tig0001315:28555-28574 | None:intergenic | 30.0% | |
TGCAATGGACACAAAATTAT+TGG | - | tig0001315:28806-28825 | Msa1336750:intron | 30.0% | |
AATGGACACAAAATTATTGG+AGG | - | tig0001315:28809-28828 | Msa1336750:intron | 30.0% | |
!! | AATTATTGGAGGCACTTTAT+TGG | - | tig0001315:28820-28839 | Msa1336750:intron | 30.0% |
TTCTCCAACATTTCATAAGA+TGG | - | tig0001315:28902-28921 | Msa1336750:CDS | 30.0% | |
TCTCCAACATTTCATAAGAT+GGG | - | tig0001315:28903-28922 | Msa1336750:CDS | 30.0% | |
TCTGCTCCATAATCAAATAA+TGG | + | tig0001315:29172-29191 | None:intergenic | 30.0% | |
TTACTGTCTCATTGAATAGT+TGG | - | tig0001315:29431-29450 | Msa1336750:intron | 30.0% | |
ATAAGATATGGGATCAGAAT+GGG | - | tig0001315:29546-29565 | Msa1336750:intron | 30.0% | |
!!! | GGACTTTTTTATGCTTATGA+TGG | - | tig0001315:29620-29639 | Msa1336750:CDS | 30.0% |
! | TTATGATGGAAATCTAAAGC+TGG | - | tig0001315:29634-29653 | Msa1336750:CDS | 30.0% |
! | TATGATGGAAATCTAAAGCT+GGG | - | tig0001315:29635-29654 | Msa1336750:CDS | 30.0% |
CGTCTAATTGAGTATTTAAG+GGG | - | tig0001315:29858-29877 | Msa1336750:intron | 30.0% | |
AATTGAGTATTTAAGGGGTT+TGG | - | tig0001315:29863-29882 | Msa1336750:intron | 30.0% | |
TACAAAATGTTGTCAAGTAG+CGG | - | tig0001315:30009-30028 | Msa1336750:intron | 30.0% | |
! | CAGTAGAGTATTTAGTAGTT+TGG | - | tig0001315:30306-30325 | Msa1336750:intron | 30.0% |
TTAAAAGCTAGTTATCAAGG+GGG | + | tig0001315:30337-30356 | None:intergenic | 30.0% | |
CTTAAAAGCTAGTTATCAAG+GGG | + | tig0001315:30338-30357 | None:intergenic | 30.0% | |
TTGATAAGTATTCAAGCACT+TGG | + | tig0001315:30392-30411 | None:intergenic | 30.0% | |
CATCAAAAAGTAAAACGAAG+TGG | + | tig0001315:30670-30689 | None:intergenic | 30.0% | |
! | TTCTTGTGCATTTTATCAAG+GGG | + | tig0001315:30763-30782 | None:intergenic | 30.0% |
ATCTCCCTCTTAATAATTGA+AGG | + | tig0001315:30847-30866 | None:intergenic | 30.0% | |
CAATTATTAAGAGGGAGATA+TGG | - | tig0001315:30848-30867 | Msa1336750:intron | 30.0% | |
GGGACAATAAAATTTGCAAA+AGG | - | tig0001315:30959-30978 | Msa1336750:CDS | 30.0% | |
TTGCAAAAGGTCTTACATAT+AGG | - | tig0001315:30972-30991 | Msa1336750:CDS | 30.0% | |
TGCAAAAGGTCTTACATATA+GGG | - | tig0001315:30973-30992 | Msa1336750:CDS | 30.0% | |
AGATACTGCAAGTAATGTAT+AGG | + | tig0001315:31116-31135 | None:intergenic | 30.0% | |
TGTTTGAATTCTGATACCAT+TGG | - | tig0001315:31176-31195 | Msa1336750:intron | 30.0% | |
TTGTCCAGATGAAACAAATT+AGG | - | tig0001315:31419-31438 | Msa1336750:intron | 30.0% | |
!! | ATTCACTTATGTTTCAGGTT+TGG | - | tig0001315:31833-31852 | Msa1336750:CDS | 30.0% |
AGGTTTGGATTGCTTAATAA+AGG | - | tig0001315:31848-31867 | Msa1336750:CDS | 30.0% | |
GTTTATTTGAATAAGCTCTC+AGG | - | tig0001315:31970-31989 | Msa1336750:CDS | 30.0% | |
ATAAAAACATAATTGGTGGG+TGG | + | tig0001315:32029-32048 | None:intergenic | 30.0% | |
!! | ACCCACCAATTATGTTTTTA+TGG | - | tig0001315:32028-32047 | Msa1336750:CDS | 30.0% |
CTCCATAAAAACATAATTGG+TGG | + | tig0001315:32033-32052 | None:intergenic | 30.0% | |
TTGAATAAGAAATATGAGCC+TGG | - | tig0001315:32307-32326 | Msa1336750:intron | 30.0% | |
TGAATAAGAAATATGAGCCT+GGG | - | tig0001315:32308-32327 | Msa1336750:intron | 30.0% | |
!! | ACTCTCTAAAATCGATATCA+GGG | + | tig0001315:32489-32508 | None:intergenic | 30.0% |
!! | TACTCTCTAAAATCGATATC+AGG | + | tig0001315:32490-32509 | None:intergenic | 30.0% |
TGACATTTATTAACCTCTGA+GGG | + | tig0001315:32538-32557 | None:intergenic | 30.0% | |
TTGACATTTATTAACCTCTG+AGG | + | tig0001315:32539-32558 | None:intergenic | 30.0% | |
GCATCAAATAATGTAACTGT+TGG | - | tig0001315:32697-32716 | Msa1336750:intron | 30.0% | |
TCAAATAATGTAACTGTTGG+GGG | - | tig0001315:32700-32719 | Msa1336750:intron | 30.0% | |
TTTATCCATTTAACTGTTGG+GGG | - | tig0001315:32772-32791 | Msa1336750:intron | 30.0% | |
ATTTACAGGTTTCAAAGACA+AGG | - | tig0001315:32918-32937 | Msa1336750:intron | 30.0% | |
CTTAAACAGAACGCTAAAAT+TGG | + | tig0001315:32949-32968 | None:intergenic | 30.0% | |
ATAAATAAATGCATGGCATC+AGG | + | tig0001315:33026-33045 | None:intergenic | 30.0% | |
ATATCGTAATATATGTGACC+GGG | + | tig0001315:33130-33149 | None:intergenic | 30.0% | |
TATGTTCATCGAAACACTAT+AGG | - | tig0001315:33240-33259 | Msa1336750:CDS | 30.0% | |
ATGTTCATCGAAACACTATA+GGG | - | tig0001315:33241-33260 | Msa1336750:CDS | 30.0% | |
AAACAGAAGATATTGAAAGG+CGG | - | tig0001315:33275-33294 | Msa1336750:five_prime_UTR | 30.0% | |
ATGAATCACTGACACATTTA+TGG | + | tig0001315:33394-33413 | None:intergenic | 30.0% | |
!! | TGTGCTTGTGCTTGTTATTA+TGG | + | tig0001315:26847-26866 | None:intergenic | 35.0% |
TCATTGTGCAGTGAAAATCA+TGG | - | tig0001315:26879-26898 | Msa1336750:three_prime_UTR | 35.0% | |
ATGTATTGTTGTCAGGACTT+AGG | - | tig0001315:27227-27246 | Msa1336750:intron | 35.0% | |
AATGTATGGTCTATGAAGCA+CGG | - | tig0001315:27310-27329 | Msa1336750:CDS | 35.0% | |
TGATGAATGTGTGACAATGT+CGG | + | tig0001315:27344-27363 | None:intergenic | 35.0% | |
CGTAAATTCTCATTGGATGT+CGG | + | tig0001315:27672-27691 | None:intergenic | 35.0% | |
! | AAAGTGTCATACACATGAAG+TGG | + | tig0001315:28044-28063 | None:intergenic | 35.0% |
GTCAGTCTAAACTCTTTCAA+GGG | + | tig0001315:28300-28319 | None:intergenic | 35.0% | |
GTTTAGACTGACCAAAGAAT+TGG | - | tig0001315:28308-28327 | Msa1336750:intron | 35.0% | |
CCTTTGTTGAACCAATTCTT+TGG | + | tig0001315:28322-28341 | None:intergenic | 35.0% | |
! | CCAAAGAATTGGTTCAACAA+AGG | - | tig0001315:28319-28338 | Msa1336750:intron | 35.0% |
TCATGGACTTTATTCTGACT+TGG | - | tig0001315:28385-28404 | Msa1336750:intron | 35.0% | |
CATGGACTTTATTCTGACTT+GGG | - | tig0001315:28386-28405 | Msa1336750:intron | 35.0% | |
GGAGTTTCCAATTATCTTGT+TGG | - | tig0001315:28429-28448 | Msa1336750:CDS | 35.0% | |
ATGCTCACCAACAAGATAAT+TGG | + | tig0001315:28439-28458 | None:intergenic | 35.0% | |
!! | CATGTATGCATTTCTAGCAA+GGG | + | tig0001315:28504-28523 | None:intergenic | 35.0% |
! | AGCTATCCTAGAGAGTTTTA+AGG | + | tig0001315:28625-28644 | None:intergenic | 35.0% |
!! | ATTCTACCTTTTAGGTGCAA+TGG | - | tig0001315:28791-28810 | Msa1336750:intron | 35.0% |
CTCCAACATTTCATAAGATG+GGG | - | tig0001315:28904-28923 | Msa1336750:CDS | 35.0% | |
AACATTTCATAAGATGGGGA+GGG | - | tig0001315:28908-28927 | Msa1336750:CDS | 35.0% | |
! | ATAAACTCCATACTGCCTTT+TGG | - | tig0001315:28945-28964 | Msa1336750:CDS | 35.0% |
TGTTGGTATAACTTGATCAC+TGG | + | tig0001315:29243-29262 | None:intergenic | 35.0% | |
AGACTATCATCAACAACTGT+TGG | + | tig0001315:29260-29279 | None:intergenic | 35.0% | |
!! | AACAGTTGTTGATGATAGTC+TGG | - | tig0001315:29259-29278 | Msa1336750:intron | 35.0% |
! | TTGATGATAGTCTGGAAGTT+TGG | - | tig0001315:29267-29286 | Msa1336750:intron | 35.0% |
ATAAGCAGATTTAACATCCG+TGG | - | tig0001315:29310-29329 | Msa1336750:intron | 35.0% | |
!! | AAGAGCATTGATTTGATCCA+CGG | + | tig0001315:29330-29349 | None:intergenic | 35.0% |
AAACAAGTGCGTTAAAACGA+GGG | + | tig0001315:29376-29395 | None:intergenic | 35.0% | |
AATTTAATCGCAGACTCTGT+AGG | + | tig0001315:29491-29510 | None:intergenic | 35.0% | |
TACAGAGTCTGCGATTAAAT+TGG | - | tig0001315:29490-29509 | Msa1336750:intron | 35.0% | |
CGATTAAATTGGCAAAGGAA+TGG | - | tig0001315:29501-29520 | Msa1336750:intron | 35.0% | |
TAAATTGGCAAAGGAATGGA+TGG | - | tig0001315:29505-29524 | Msa1336750:intron | 35.0% | |
TTGTGGCAGATGATAAGATA+TGG | - | tig0001315:29534-29553 | Msa1336750:intron | 35.0% | |
TGTGGCAGATGATAAGATAT+GGG | - | tig0001315:29535-29554 | Msa1336750:intron | 35.0% | |
GATAAGATATGGGATCAGAA+TGG | - | tig0001315:29545-29564 | Msa1336750:intron | 35.0% | |
! | TGGTCATACATATTTTGTCC+AGG | - | tig0001315:29685-29704 | Msa1336750:CDS | 35.0% |
! | CATACATATTTTGTCCAGGT+AGG | - | tig0001315:29689-29708 | Msa1336750:CDS | 35.0% |
! | TATCTCTGAAGGAATCTGAT+GGG | - | tig0001315:29787-29806 | Msa1336750:intron | 35.0% |
! | TTCCCTCTTGATAGCTATAA+AGG | - | tig0001315:29889-29908 | Msa1336750:intron | 35.0% |
! | TCCCTCTTGATAGCTATAAA+GGG | - | tig0001315:29890-29909 | Msa1336750:intron | 35.0% |
TCCCTTTATAGCTATCAAGA+GGG | + | tig0001315:29894-29913 | None:intergenic | 35.0% | |
GCTATTTAACAACACTGCTT+GGG | + | tig0001315:29923-29942 | None:intergenic | 35.0% | |
AGCTATTTAACAACACTGCT+TGG | + | tig0001315:29924-29943 | None:intergenic | 35.0% | |
!! | TAAAGAGAGGTGTTGTGATA+GGG | - | tig0001315:30232-30251 | Msa1336750:intron | 35.0% |
ATACTACTCAATGTGAGACT+TGG | + | tig0001315:30278-30297 | None:intergenic | 35.0% | |
CACACAACATTTCAATATGC+AGG | - | tig0001315:30534-30553 | Msa1336750:CDS | 35.0% | |
GAGGATTATAGTATTCAGGT+GGG | + | tig0001315:30608-30627 | None:intergenic | 35.0% | |
ATGCATATGTGTGAATACAC+TGG | - | tig0001315:30687-30706 | Msa1336750:CDS | 35.0% | |
! | TCTTGTGCATTTTATCAAGG+GGG | + | tig0001315:30762-30781 | None:intergenic | 35.0% |
AAAGGTCTTACATATAGGGA+CGG | - | tig0001315:30977-30996 | Msa1336750:CDS | 35.0% | |
TTACTTGCAGTATCTGCTTA+TGG | - | tig0001315:31121-31140 | Msa1336750:intron | 35.0% | |
TACTTGCAGTATCTGCTTAT+GGG | - | tig0001315:31122-31141 | Msa1336750:intron | 35.0% | |
!!! | AACAAGCGTTTTGGAATAGA+TGG | + | tig0001315:31248-31267 | None:intergenic | 35.0% |
AAGGGTAAAATGTGATCCAA+TGG | + | tig0001315:31288-31307 | None:intergenic | 35.0% | |
!! | CAGTCCTAATTTGTTTCATC+TGG | + | tig0001315:31426-31445 | None:intergenic | 35.0% |
! | ACTGGTGAGGATTATTTTCT+AGG | - | tig0001315:31477-31496 | Msa1336750:intron | 35.0% |
!! | TCTCTTCTAGTTTGATTACG+TGG | - | tig0001315:31798-31817 | Msa1336750:CDS | 35.0% |
! | CTCTGGAAGTTCATTTAACA+TGG | + | tig0001315:32455-32474 | None:intergenic | 35.0% |
CATGTTAAATGAACTTCCAG+AGG | - | tig0001315:32453-32472 | Msa1336750:intron | 35.0% | |
!! | CAGTGATGGATTATCAAGTA+TGG | + | tig0001315:32515-32534 | None:intergenic | 35.0% |
ATTTCCAAAGCATAGCAATG+AGG | - | tig0001315:32732-32751 | Msa1336750:intron | 35.0% | |
AAAGCATAGCAATGAGGAAA+CGG | - | tig0001315:32738-32757 | Msa1336750:intron | 35.0% | |
CCACATGTTAGAATATGCTT+TGG | + | tig0001315:32811-32830 | None:intergenic | 35.0% | |
CCAAAGCATATTCTAACATG+TGG | - | tig0001315:32808-32827 | Msa1336750:intron | 35.0% | |
CTTCTTGCATTGAAGAAAAC+TGG | + | tig0001315:32897-32916 | None:intergenic | 35.0% | |
!! | TCAATGCAAGAAGCATTTAC+AGG | - | tig0001315:32904-32923 | Msa1336750:intron | 35.0% |
AAACGACTTAAACACTACAC+CGG | - | tig0001315:33076-33095 | Msa1336750:intron | 35.0% | |
TTAAACACTACACCGGTATA+TGG | - | tig0001315:33083-33102 | Msa1336750:intron | 35.0% | |
TGATCATCTTCAGAAGTTTG+AGG | + | tig0001315:33190-33209 | None:intergenic | 35.0% | |
TGTTCATCGAAACACTATAG+GGG | - | tig0001315:33242-33261 | Msa1336750:CDS | 35.0% | |
ACATCCTCAACATGGATAAA+GGG | + | tig0001315:33422-33441 | None:intergenic | 35.0% | |
AACCAACAACATATGAGATG+AGG | - | tig0001315:33529-33548 | Msa1336750:intron | 35.0% | |
GCTAGAAGTTTCTATTCAAG+AGG | - | tig0001315:33596-33615 | Msa1336750:intron | 35.0% | |
ACTGCACAATGAAGAGAAGA+AGG | + | tig0001315:26871-26890 | None:intergenic | 40.0% | |
!! | AATTTTTCAGATGGCGTGTG+AGG | - | tig0001315:26925-26944 | Msa1336750:three_prime_UTR | 40.0% |
ATCTACACTGTTGTCATCGT+TGG | - | tig0001315:26980-26999 | Msa1336750:exon | 40.0% | |
ACTTGAAAGAGGAGGAAAAG+AGG | + | tig0001315:27074-27093 | None:intergenic | 40.0% | |
AAAGGGTTACTTGAAAGAGG+AGG | + | tig0001315:27082-27101 | None:intergenic | 40.0% | |
TTGTTGTCAGGACTTAGGAT+AGG | - | tig0001315:27232-27251 | Msa1336750:intron | 40.0% | |
TTGAACGTACACACATGTGT+CGG | - | tig0001315:27365-27384 | Msa1336750:intron | 40.0% | |
TCTGTAGCACATCTGATTGA+AGG | + | tig0001315:27425-27444 | None:intergenic | 40.0% | |
! | GCTCAACTAGTTTGAGCTAA+GGG | + | tig0001315:27461-27480 | None:intergenic | 40.0% |
! | AGCTCAACTAGTTTGAGCTA+AGG | + | tig0001315:27462-27481 | None:intergenic | 40.0% |
AATTCTCATTGGATGTCGGT+TGG | + | tig0001315:27668-27687 | None:intergenic | 40.0% | |
!! | GCAAATTGGTGGATTCTCAT+TGG | - | tig0001315:27738-27757 | Msa1336750:CDS | 40.0% |
ATTGGATGTCAGTGTGACAT+TGG | - | tig0001315:27756-27775 | Msa1336750:intron | 40.0% | |
TGATCCTTTCAACTACTCTC+TGG | - | tig0001315:28009-28028 | Msa1336750:intron | 40.0% | |
ACAACCAGAGAGTAGTTGAA+AGG | + | tig0001315:28016-28035 | None:intergenic | 40.0% | |
! | CTGAAAAGCATGCTAAGTCA+AGG | + | tig0001315:28134-28153 | None:intergenic | 40.0% |
! | CTTAGCATGCTTTTCAGATG+AGG | - | tig0001315:28137-28156 | Msa1336750:intron | 40.0% |
! | GCTTTTCAGATGAGGATTCT+CGG | - | tig0001315:28145-28164 | Msa1336750:intron | 40.0% |
AGTCTAAACTCTTTCAAGGG+TGG | + | tig0001315:28297-28316 | None:intergenic | 40.0% | |
GGTCAGTCTAAACTCTTTCA+AGG | + | tig0001315:28301-28320 | None:intergenic | 40.0% | |
!! | CCATGTATGCATTTCTAGCA+AGG | + | tig0001315:28505-28524 | None:intergenic | 40.0% |
CCTTGCTAGAAATGCATACA+TGG | - | tig0001315:28502-28521 | Msa1336750:CDS | 40.0% | |
GCTTATTTGAGCTTATCTGC+TGG | - | tig0001315:28565-28584 | Msa1336750:intron | 40.0% | |
TTGTGTCCATTGCACCTAAA+AGG | + | tig0001315:28800-28819 | None:intergenic | 40.0% | |
!! | TTGGAGGCACTTTATTGGAA+AGG | - | tig0001315:28825-28844 | Msa1336750:intron | 40.0% |
!! | TGGAGGCACTTTATTGGAAA+GGG | - | tig0001315:28826-28845 | Msa1336750:intron | 40.0% |
! | ACTTTATTGGAAAGGGGTAC+CGG | - | tig0001315:28833-28852 | Msa1336750:intron | 40.0% |
TGGCTGTTCATGTCAAAAAC+CGG | + | tig0001315:28855-28874 | None:intergenic | 40.0% | |
CTCCCCATCTTATGAAATGT+TGG | + | tig0001315:28909-28928 | None:intergenic | 40.0% | |
CAACATTTCATAAGATGGGG+AGG | - | tig0001315:28907-28926 | Msa1336750:CDS | 40.0% | |
ATCAACAGTTCGACACCAAA+AGG | + | tig0001315:28963-28982 | None:intergenic | 40.0% | |
GTTGATGTGTGATACTGACA+TGG | - | tig0001315:28977-28996 | Msa1336750:intron | 40.0% | |
TGTGTGATACTGACATGGTT+TGG | - | tig0001315:28982-29001 | Msa1336750:intron | 40.0% | |
!! | TACTGACATGGTTTGGTTGA+AGG | - | tig0001315:28989-29008 | Msa1336750:intron | 40.0% |
AACGAGCAAGATATGGAAGT+GGG | + | tig0001315:29196-29215 | None:intergenic | 40.0% | |
TAACGAGCAAGATATGGAAG+TGG | + | tig0001315:29197-29216 | None:intergenic | 40.0% | |
GATGTTAAAACATCTGCTCC+GGG | + | tig0001315:29221-29240 | None:intergenic | 40.0% | |
GGATGTTAAAACATCTGCTC+CGG | + | tig0001315:29222-29241 | None:intergenic | 40.0% | |
AGTCTGGAAGTTTGGAAAGA+AGG | - | tig0001315:29275-29294 | Msa1336750:intron | 40.0% | |
CAAACAAGTGCGTTAAAACG+AGG | + | tig0001315:29377-29396 | None:intergenic | 40.0% | |
! | GTCTCATTGAATAGTTGGTG+CGG | - | tig0001315:29436-29455 | Msa1336750:intron | 40.0% |
GTCTGCGATTAAATTGGCAA+AGG | - | tig0001315:29496-29515 | Msa1336750:intron | 40.0% | |
TGATATTGTCCACAGAGAGT+TGG | - | tig0001315:29574-29593 | Msa1336750:intron | 40.0% | |
GATATTGTCCACAGAGAGTT+GGG | - | tig0001315:29575-29594 | Msa1336750:intron | 40.0% | |
CCACTGCAAAAGATACTTGA+AGG | + | tig0001315:29668-29687 | None:intergenic | 40.0% | |
! | CCTTCAAGTATCTTTTGCAG+TGG | - | tig0001315:29665-29684 | Msa1336750:CDS | 40.0% |
! | GTATCTCTGAAGGAATCTGA+TGG | - | tig0001315:29786-29805 | Msa1336750:intron | 40.0% |
! | ATCTCTGAAGGAATCTGATG+GGG | - | tig0001315:29788-29807 | Msa1336750:intron | 40.0% |
TACCACTCGATGTAGGAATT+AGG | + | tig0001315:29833-29852 | None:intergenic | 40.0% | |
CTCCCTTTATAGCTATCAAG+AGG | + | tig0001315:29895-29914 | None:intergenic | 40.0% | |
ACTTGAGAACAATGTTGTCG+CGG | + | tig0001315:30096-30115 | None:intergenic | 40.0% | |
CTTGAATACGTATCAAAGCC+CGG | - | tig0001315:30117-30136 | Msa1336750:intron | 40.0% | |
! | GAGGCTTTACTCAGTCTTTT+CGG | + | tig0001315:30183-30202 | None:intergenic | 40.0% |
!! | CTAAAGAGAGGTGTTGTGAT+AGG | - | tig0001315:30231-30250 | Msa1336750:intron | 40.0% |
TATGTATCAGCAACTCAGGT+TGG | - | tig0001315:30497-30516 | Msa1336750:intron | 40.0% | |
AATGTTGTGTGCACTGCATA+TGG | + | tig0001315:30525-30544 | None:intergenic | 40.0% | |
TTTCAATATGCAGGCACAGA+AGG | - | tig0001315:30543-30562 | Msa1336750:CDS | 40.0% | |
TATAGTATTCAGGTGGGTCA+TGG | + | tig0001315:30602-30621 | None:intergenic | 40.0% | |
GGAGGATTATAGTATTCAGG+TGG | + | tig0001315:30609-30628 | None:intergenic | 40.0% | |
CCAGGAGGATTATAGTATTC+AGG | + | tig0001315:30612-30631 | None:intergenic | 40.0% | |
CCTGAATACTATAATCCTCC+TGG | - | tig0001315:30609-30628 | Msa1336750:CDS | 40.0% | |
GTGGTGTTTCACTGAAATTG+AGG | + | tig0001315:30651-30670 | None:intergenic | 40.0% | |
ATCGCAGTATAGATGAATGG+CGG | + | tig0001315:31069-31088 | None:intergenic | 40.0% | |
AGCATCGCAGTATAGATGAA+TGG | + | tig0001315:31072-31091 | None:intergenic | 40.0% | |
CAAGTCAATACGTGCATACT+TGG | + | tig0001315:31319-31338 | None:intergenic | 40.0% | |
TGATCCAAAGGACAGAGAAA+AGG | + | tig0001315:31763-31782 | None:intergenic | 40.0% | |
TCCTTTGGATCATGTGTTTG+AGG | - | tig0001315:31771-31790 | Msa1336750:CDS | 40.0% | |
ACCTCAAACACATGATCCAA+AGG | + | tig0001315:31775-31794 | None:intergenic | 40.0% | |
AAGGATTATTATGCCGGTGA+TGG | - | tig0001315:31867-31886 | Msa1336750:CDS | 40.0% | |
AACACAAGTACTACCATCAC+CGG | + | tig0001315:31883-31902 | None:intergenic | 40.0% | |
GGTGGATAGAAATTGAAGAG+CGG | + | tig0001315:32011-32030 | None:intergenic | 40.0% | |
TTGATCCGTCCCCTTATATT+TGG | - | tig0001315:32282-32301 | Msa1336750:intron | 40.0% | |
CAACTCCAAATATAAGGGGA+CGG | + | tig0001315:32290-32309 | None:intergenic | 40.0% | |
GAATTCAGGTGAAAAAGTCG+TGG | - | tig0001315:32632-32651 | Msa1336750:intron | 40.0% | |
GATGTTCACCTCTGTAAAGA+AGG | - | tig0001315:32658-32677 | Msa1336750:intron | 40.0% | |
GTTTCCTCATTGCTATGCTT+TGG | + | tig0001315:32739-32758 | None:intergenic | 40.0% | |
ATATACTGGGATGAGAAACC+TGG | - | tig0001315:33148-33167 | Msa1336750:CDS | 40.0% | |
CATCTTCAGAAGTTTGAGGA+GGG | + | tig0001315:33186-33205 | None:intergenic | 40.0% | |
TCATCTTCAGAAGTTTGAGG+AGG | + | tig0001315:33187-33206 | None:intergenic | 40.0% | |
!! | TTCTGAAATTGACCTCACCA+AGG | + | tig0001315:33217-33236 | None:intergenic | 40.0% |
! | TCTTAGTCTTCACAACGAGT+TGG | + | tig0001315:33309-33328 | None:intergenic | 40.0% |
ACACTTATTGAAGTCATGCC+CGG | - | tig0001315:33365-33384 | Msa1336750:intron | 40.0% | |
ACTGACACATTTATGGACAC+CGG | + | tig0001315:33387-33406 | None:intergenic | 40.0% | |
GACATCCTCAACATGGATAA+AGG | + | tig0001315:33423-33442 | None:intergenic | 40.0% | |
!! | AAGTACTGACATCCTCAACA+TGG | + | tig0001315:33430-33449 | None:intergenic | 40.0% |
AGGATGTCAGTACTTAGTTG+AGG | - | tig0001315:33435-33454 | Msa1336750:intron | 40.0% | |
GGATGTCAGTACTTAGTTGA+GGG | - | tig0001315:33436-33455 | Msa1336750:intron | 40.0% | |
AGCCTCATCTCATATGTTGT+TGG | + | tig0001315:33534-33553 | None:intergenic | 40.0% | |
TGACAACAGTGTAGATCGTG+AGG | + | tig0001315:26976-26995 | None:intergenic | 45.0% | |
CTTCTACAACCTCTTCAGCT+TGG | - | tig0001315:27047-27066 | Msa1336750:CDS | 45.0% | |
AAAAGAGGACCAAGCTGAAG+AGG | + | tig0001315:27059-27078 | None:intergenic | 45.0% | |
CAGATGTGCTACAGAGTGTA+TGG | - | tig0001315:27430-27449 | Msa1336750:intron | 45.0% | |
!!! | TCGACACATTTTGGAGCTCA+GGG | + | tig0001315:28233-28252 | None:intergenic | 45.0% |
! | CAGGCTTTCTCGACACATTT+TGG | + | tig0001315:28242-28261 | None:intergenic | 45.0% |
CGAGGAGGAACATTCAAAAC+AGG | + | tig0001315:28261-28280 | None:intergenic | 45.0% | |
! | GGCATCTTTTTATTGCGAGG+AGG | + | tig0001315:28276-28295 | None:intergenic | 45.0% |
! | GGTGGCATCTTTTTATTGCG+AGG | + | tig0001315:28279-28298 | None:intergenic | 45.0% |
AGACTAGGGCCTGTTTCAAT+TGG | - | tig0001315:28543-28562 | Msa1336750:intron | 45.0% | |
!! | GGAGGCACTTTATTGGAAAG+GGG | - | tig0001315:28827-28846 | Msa1336750:intron | 45.0% |
CAACATCCATGGTGCTCATA+TGG | + | tig0001315:28875-28894 | None:intergenic | 45.0% | |
CATATGAGCACCATGGATGT+TGG | - | tig0001315:28873-28892 | Msa1336750:intron | 45.0% | |
TTCGACACCAAAAGGCAGTA+TGG | + | tig0001315:28955-28974 | None:intergenic | 45.0% | |
CCATATCTTGCTCGTTATCC+CGG | - | tig0001315:29200-29219 | Msa1336750:intron | 45.0% | |
ACTGTTAACTAGGTCCTACC+TGG | + | tig0001315:29706-29725 | None:intergenic | 45.0% | |
AAGGAATCTGATGGGGACTT+GGG | - | tig0001315:29795-29814 | Msa1336750:intron | 45.0% | |
TGATGGGGACTTGGGTATTA+TGG | - | tig0001315:29803-29822 | Msa1336750:intron | 45.0% | |
TGCCTAATTCCTACATCGAG+TGG | - | tig0001315:29828-29847 | Msa1336750:intron | 45.0% | |
CGTAACATACCACTCGATGT+AGG | + | tig0001315:29840-29859 | None:intergenic | 45.0% | |
AACAATGTTGTCGCGGATAG+CGG | + | tig0001315:30089-30108 | None:intergenic | 45.0% | |
TTAGAAAGGGCTACCTATGG+AGG | - | tig0001315:30151-30170 | Msa1336750:intron | 45.0% | |
!! | TTTTCGGTTAGCTCCTCCAT+AGG | + | tig0001315:30167-30186 | None:intergenic | 45.0% |
!! | GAGACTTCAGCTCTAAAGAG+AGG | - | tig0001315:30219-30238 | Msa1336750:intron | 45.0% |
! | AGGTGTTGTGATAGGGACTT+GGG | - | tig0001315:30239-30258 | Msa1336750:intron | 45.0% |
AGGGTATGTATCAGCAACTC+AGG | - | tig0001315:30493-30512 | Msa1336750:intron | 45.0% | |
AAAGCATGGCTTCTCGTAGT+CGG | + | tig0001315:30578-30597 | None:intergenic | 45.0% | |
GGTCTTACATAGAGGAACAG+AGG | + | tig0001315:30741-30760 | None:intergenic | 45.0% | |
ATCAAGGGGGTCTTACATAG+AGG | + | tig0001315:30749-30768 | None:intergenic | 45.0% | |
! | ATGAATGGCGGGAAACTGAA+TGG | + | tig0001315:31057-31076 | None:intergenic | 45.0% |
TCGCAGTATAGATGAATGGC+GGG | + | tig0001315:31068-31087 | None:intergenic | 45.0% | |
CTAAATGACAAGAAACCCCC+TGG | + | tig0001315:31224-31243 | None:intergenic | 45.0% | |
! | CAGGGGGTTTCTTGTCATTT+AGG | - | tig0001315:31222-31241 | Msa1336750:CDS | 45.0% |
! | CCAAAACGCTTGTTGCTAAG+CGG | - | tig0001315:31254-31273 | Msa1336750:CDS | 45.0% |
! | CTAAGCGGAAAGCATACCAT+TGG | - | tig0001315:31269-31288 | Msa1336750:CDS | 45.0% |
TTCCCTTCTGAACAGAACAC+TGG | - | tig0001315:31459-31478 | Msa1336750:intron | 45.0% | |
CACCAGTGTTCTGTTCAGAA+GGG | + | tig0001315:31464-31483 | None:intergenic | 45.0% | |
TCACCAGTGTTCTGTTCAGA+AGG | + | tig0001315:31465-31484 | None:intergenic | 45.0% | |
TTCTGAACAGAACACTGGTG+AGG | - | tig0001315:31464-31483 | Msa1336750:intron | 45.0% | |
TTTAGGTCATGCCTCCACTA+TGG | - | tig0001315:31674-31693 | Msa1336750:intron | 45.0% | |
CTATCAATCCTGCACCATAG+TGG | + | tig0001315:31691-31710 | None:intergenic | 45.0% | |
CACTATGGTGCAGGATTGAT+AGG | - | tig0001315:31689-31708 | Msa1336750:intron | 45.0% | |
ATAGACCCCTTCAAAACACC+TGG | + | tig0001315:31730-31749 | None:intergenic | 45.0% | |
! | ACAGCCTTTTCTCTGTCCTT+TGG | - | tig0001315:31756-31775 | Msa1336750:intron | 45.0% |
ACAGTAACTGACTGACCAAG+GGG | + | tig0001315:32190-32209 | None:intergenic | 45.0% | |
GACAGTAACTGACTGACCAA+GGG | + | tig0001315:32191-32210 | None:intergenic | 45.0% | |
TGACAGTAACTGACTGACCA+AGG | + | tig0001315:32192-32211 | None:intergenic | 45.0% | |
ACCTTAGATGAGAGTAGTCG+TGG | - | tig0001315:32236-32255 | Msa1336750:intron | 45.0% | |
ACCACGACTACTCTCATCTA+AGG | + | tig0001315:32240-32259 | None:intergenic | 45.0% | |
GACGGATCAAGTCTATAGAG+TGG | + | tig0001315:32272-32291 | None:intergenic | 45.0% | |
AATATGAGCCTGGGTCAACT+TGG | - | tig0001315:32317-32336 | Msa1336750:intron | 45.0% | |
! | AATCTCTTCCAAGTTGACCC+AGG | + | tig0001315:32328-32347 | None:intergenic | 45.0% |
GAACTTCCAGAGGAAGAGTT+TGG | - | tig0001315:32463-32482 | Msa1336750:intron | 45.0% | |
ATCTCTGCTGAAGTTATGCC+TGG | - | tig0001315:32603-32622 | Msa1336750:intron | 45.0% | |
TCTCTGCTGAAGTTATGCCT+GGG | - | tig0001315:32604-32623 | Msa1336750:intron | 45.0% | |
ATGCCTGGGTTCTTGAATTC+AGG | - | tig0001315:32618-32637 | Msa1336750:intron | 45.0% | |
TCACCTGAATTCAAGAACCC+AGG | + | tig0001315:32624-32643 | None:intergenic | 45.0% | |
CTTGGGTTCCTTCTTTACAG+AGG | + | tig0001315:32669-32688 | None:intergenic | 45.0% | |
GTACTCCCCCAACAGTTAAA+TGG | + | tig0001315:32780-32799 | None:intergenic | 45.0% | |
CAGGTTTCAAAGACAAGGCA+AGG | - | tig0001315:32923-32942 | Msa1336750:intron | 45.0% | |
AAATGCATGGCATCAGGACA+TGG | + | tig0001315:33020-33039 | None:intergenic | 45.0% | |
GGTCACACAACACCATATAC+CGG | + | tig0001315:33098-33117 | None:intergenic | 45.0% | |
TCAGAAGTTTGAGGAGGGAT+TGG | + | tig0001315:33181-33200 | None:intergenic | 45.0% | |
GAAATTGACCTCACCAAGGT+GGG | + | tig0001315:33213-33232 | None:intergenic | 45.0% | |
TGAAATTGACCTCACCAAGG+TGG | + | tig0001315:33214-33233 | None:intergenic | 45.0% | |
CTGACACATTTATGGACACC+GGG | + | tig0001315:33386-33405 | None:intergenic | 45.0% | |
TACGCCCTTTATCCATGTTG+AGG | - | tig0001315:33415-33434 | Msa1336750:intron | 45.0% | |
! | TGAGATGAGGCTGCAGTTTT+TGG | - | tig0001315:33542-33561 | Msa1336750:intron | 45.0% |
GTGTAGATCGTGAGGAAGAG+AGG | + | tig0001315:26968-26987 | None:intergenic | 50.0% | |
ACATGACACATGTCCGACAC+AGG | - | tig0001315:27394-27413 | Msa1336750:intron | 50.0% | |
! | ATTGAAGGCGTGTCCTGTGT+CGG | + | tig0001315:27410-27429 | None:intergenic | 50.0% |
! | GGATGTCGGTTGGACTTACA+TGG | + | tig0001315:27658-27677 | None:intergenic | 50.0% |
!!! | CTCGACACATTTTGGAGCTC+AGG | + | tig0001315:28234-28253 | None:intergenic | 50.0% |
GAACAGCCATATGAGCACCA+TGG | - | tig0001315:28866-28885 | Msa1336750:intron | 50.0% | |
CCGGGATAACGAGCAAGATA+TGG | + | tig0001315:29203-29222 | None:intergenic | 50.0% | |
GTTGGTGCGGCCTACAATAT+AGG | - | tig0001315:29449-29468 | Msa1336750:intron | 50.0% | |
GGAATGGATGGAACTGCTTG+TGG | - | tig0001315:29517-29536 | Msa1336750:intron | 50.0% | |
GAAGGAATCTGATGGGGACT+TGG | - | tig0001315:29794-29813 | Msa1336750:intron | 50.0% | |
TTTCTAAGCCACCAACGACC+GGG | + | tig0001315:30138-30157 | None:intergenic | 50.0% | |
CTTTCTAAGCCACCAACGAC+CGG | + | tig0001315:30139-30158 | None:intergenic | 50.0% | |
!! | GGTCGTTGGTGGCTTAGAAA+GGG | - | tig0001315:30138-30157 | Msa1336750:intron | 50.0% |
GGCTTAGAAAGGGCTACCTA+TGG | - | tig0001315:30148-30167 | Msa1336750:intron | 50.0% | |
TAGAGCTGAAGTCTCAGCAG+CGG | + | tig0001315:30214-30233 | None:intergenic | 50.0% | |
!! | GAGGTGTTGTGATAGGGACT+TGG | - | tig0001315:30238-30257 | Msa1336750:intron | 50.0% |
TGATAGGGACTTGGGTGTCA+TGG | - | tig0001315:30247-30266 | Msa1336750:intron | 50.0% | |
! | GATAGGGACTTGGGTGTCAT+GGG | - | tig0001315:30248-30267 | Msa1336750:intron | 50.0% |
! | ATAGGGACTTGGGTGTCATG+GGG | - | tig0001315:30249-30268 | Msa1336750:intron | 50.0% |
AGGTGGGTCATGGAAAAGCA+TGG | + | tig0001315:30592-30611 | None:intergenic | 50.0% | |
! | CCGCTTAGCAACAAGCGTTT+TGG | + | tig0001315:31257-31276 | None:intergenic | 50.0% |
TCAATCCTGCACCATAGTGG+AGG | + | tig0001315:31688-31707 | None:intergenic | 50.0% | |
GGTGCAGGATTGATAGGCTA+TGG | - | tig0001315:31695-31714 | Msa1336750:intron | 50.0% | |
!! | TCCCCATCCAGGTGTTTTGA+AGG | - | tig0001315:31720-31739 | Msa1336750:intron | 50.0% |
CCCTTCAAAACACCTGGATG+GGG | + | tig0001315:31724-31743 | None:intergenic | 50.0% | |
!! | CCCCATCCAGGTGTTTTGAA+GGG | - | tig0001315:31721-31740 | Msa1336750:intron | 50.0% |
CCCCTTCAAAACACCTGGAT+GGG | + | tig0001315:31725-31744 | None:intergenic | 50.0% | |
!!! | CCCATCCAGGTGTTTTGAAG+GGG | - | tig0001315:31722-31741 | Msa1336750:intron | 50.0% |
ACCCCTTCAAAACACCTGGA+TGG | + | tig0001315:31726-31745 | None:intergenic | 50.0% | |
AGCTCTCAGGACAGCTTATG+AGG | - | tig0001315:31983-32002 | Msa1336750:CDS | 50.0% | |
TATTTACCCAAACGCCCCCT+TGG | - | tig0001315:32172-32191 | Msa1336750:intron | 50.0% | |
CAGTAACTGACTGACCAAGG+GGG | + | tig0001315:32189-32208 | None:intergenic | 50.0% | |
TAATCCATCACTGCCCTCAG+AGG | - | tig0001315:32522-32541 | Msa1336750:intron | 50.0% | |
! | TTAACCTCTGAGGGCAGTGA+TGG | + | tig0001315:32529-32548 | None:intergenic | 50.0% |
! | TATGTGACCGGGAGTGTGAT+CGG | + | tig0001315:33119-33138 | None:intergenic | 50.0% |
ACTGGGATGAGAAACCTGGA+TGG | - | tig0001315:33152-33171 | Msa1336750:CDS | 50.0% | |
CTGAAGATGATCACCCACCT+TGG | - | tig0001315:33197-33216 | Msa1336750:CDS | 50.0% | |
TTGGAGCTCAGGGAAAGCAG+AGG | + | tig0001315:28223-28242 | None:intergenic | 55.0% | |
TGAGCACCATGGATGTTGGC+TGG | - | tig0001315:28877-28896 | Msa1336750:intron | 55.0% | |
! | GAGCACCATGGATGTTGGCT+GGG | - | tig0001315:28878-28897 | Msa1336750:intron | 55.0% |
! | AGCACCATGGATGTTGGCTG+GGG | - | tig0001315:28879-28898 | Msa1336750:intron | 55.0% |
AGAACCCCAGCCAACATCCA+TGG | + | tig0001315:28886-28905 | None:intergenic | 55.0% | |
CCACAGAGAGTTGGGACCAT+CGG | - | tig0001315:29583-29602 | Msa1336750:CDS | 55.0% | |
ACGTATCAAAGCCCGGTCGT+TGG | - | tig0001315:30124-30143 | Msa1336750:intron | 55.0% | |
TATCAAAGCCCGGTCGTTGG+TGG | - | tig0001315:30127-30146 | Msa1336750:intron | 55.0% | |
!! | CGGTCGTTGGTGGCTTAGAA+AGG | - | tig0001315:30137-30156 | Msa1336750:intron | 55.0% |
TCATGCCTCCACTATGGTGC+AGG | - | tig0001315:31680-31699 | Msa1336750:intron | 55.0% | |
AGGCTATGGTTTCCCCATCC+AGG | - | tig0001315:31709-31728 | Msa1336750:intron | 55.0% | |
TCAGGGCCAAACTCTTCCTC+TGG | + | tig0001315:32472-32491 | None:intergenic | 55.0% | |
TGTGTGACCGATCACACTCC+CGG | - | tig0001315:33109-33128 | Msa1336750:intron | 55.0% | |
GATGATCACCCACCTTGGTG+AGG | - | tig0001315:33202-33221 | Msa1336750:CDS | 55.0% | |
CCGATGGTCCCAACTCTCTG+TGG | + | tig0001315:29586-29605 | None:intergenic | 60.0% | |
! | GTTGGGACCATCGGTTGACG+AGG | - | tig0001315:29592-29611 | Msa1336750:CDS | 60.0% |
CCACTGTCCTCGTCAACCGA+TGG | + | tig0001315:29602-29621 | None:intergenic | 60.0% | |
! | CCATCGGTTGACGAGGACAG+TGG | - | tig0001315:29599-29618 | Msa1336750:CDS | 60.0% |
CTCAGCAGCGGCAGTCAATG+AGG | + | tig0001315:30202-30221 | None:intergenic | 60.0% | |
GCATGGCTTCTCGTAGTCGG+TGG | + | tig0001315:30575-30594 | None:intergenic | 60.0% | |
!! | GACTGACCAAGGGGGCGTTT+GGG | + | tig0001315:32181-32200 | None:intergenic | 60.0% |
!! | TGACTGACCAAGGGGGCGTT+TGG | + | tig0001315:32182-32201 | None:intergenic | 60.0% |
!! | GGAGGGATTGGCTTCCATCC+AGG | + | tig0001315:33169-33188 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0001315 | gene | 26515 | 33693 | 26515 | ID=Msa1336750;Name=Msa1336750 |
tig0001315 | mRNA | 26515 | 33693 | 26515 | ID=Msa1336750-mRNA-1;Parent=Msa1336750;Name=Msa1336750-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96|1|1|1|0.92|0.85|14|471|631 |
tig0001315 | exon | 26515 | 27153 | 26515 | ID=Msa1336750-mRNA-1:exon:862;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 27269 | 27355 | 27269 | ID=Msa1336750-mRNA-1:exon:861;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 27449 | 27568 | 27449 | ID=Msa1336750-mRNA-1:exon:860;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 27665 | 27763 | 27665 | ID=Msa1336750-mRNA-1:exon:859;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 28416 | 28529 | 28416 | ID=Msa1336750-mRNA-1:exon:858;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 28728 | 28781 | 28728 | ID=Msa1336750-mRNA-1:exon:857;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 28889 | 28983 | 28889 | ID=Msa1336750-mRNA-1:exon:856;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 29578 | 29713 | 29578 | ID=Msa1336750-mRNA-1:exon:855;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 30502 | 30758 | 30502 | ID=Msa1336750-mRNA-1:exon:854;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 30912 | 31017 | 30912 | ID=Msa1336750-mRNA-1:exon:853;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 31198 | 31403 | 31198 | ID=Msa1336750-mRNA-1:exon:852;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 31758 | 32054 | 31758 | ID=Msa1336750-mRNA-1:exon:851;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 33117 | 33352 | 33117 | ID=Msa1336750-mRNA-1:exon:850;Parent=Msa1336750-mRNA-1 |
tig0001315 | exon | 33677 | 33693 | 33677 | ID=Msa1336750-mRNA-1:exon:849;Parent=Msa1336750-mRNA-1 |
tig0001315 | five_prime_UTR | 33677 | 33693 | 33677 | ID=Msa1336750-mRNA-1:five_prime_utr;Parent=Msa1336750-mRNA-1 |
tig0001315 | five_prime_UTR | 33274 | 33352 | 33274 | ID=Msa1336750-mRNA-1:five_prime_utr;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 33117 | 33273 | 33117 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 31758 | 32054 | 31758 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 31198 | 31403 | 31198 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 30912 | 31017 | 30912 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 30502 | 30758 | 30502 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 29578 | 29713 | 29578 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 28889 | 28983 | 28889 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 28728 | 28781 | 28728 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 28416 | 28529 | 28416 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 27665 | 27763 | 27665 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 27449 | 27568 | 27449 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 27269 | 27355 | 27269 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | CDS | 26986 | 27153 | 26986 | ID=Msa1336750-mRNA-1:cds;Parent=Msa1336750-mRNA-1 |
tig0001315 | three_prime_UTR | 26515 | 26985 | 26515 | ID=Msa1336750-mRNA-1:three_prime_utr;Parent=Msa1336750-mRNA-1 |
Gene Sequence |
Protein sequence |