AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337290 MtrunA17_Chr4g0072511 98.208 279 5 0 1 279 1 279 0.0 557
Msa1337290 MtrunA17_Chr6g0452811 45.552 281 148 3 1 279 1 278 7.48e-79 240
Msa1337290 MtrunA17_Chr7g0216561 42.806 278 156 2 2 279 3 277 1.74e-76 234
Msa1337290 MtrunA17_Chr5g0401201 43.369 279 155 2 1 279 1 276 5.39e-76 233
Msa1337290 MtrunA17_Chr8g0362621 41.577 279 160 2 1 279 1 276 5.82e-73 225
Msa1337290 MtrunA17_Chr1g0152591 39.928 278 164 2 2 279 3 277 3.78e-67 210
Msa1337290 MtrunA17_Chr4g0060181 25.430 291 158 6 1 279 1 244 1.83e-22 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337290 AT5G57490.1 58.065 279 112 3 1 279 1 274 8.86e-111 321
Msa1337290 AT5G15090.1 44.086 279 151 4 1 279 1 274 8.12e-77 235
Msa1337290 AT5G15090.2 44.086 279 151 4 1 279 1 274 8.12e-77 235
Msa1337290 AT5G67500.3 44.086 279 153 3 1 279 1 276 8.37e-77 235
Msa1337290 AT3G01280.1 43.011 279 156 2 1 279 1 276 8.21e-74 227
Msa1337290 AT5G67500.1 43.284 268 150 2 1 268 1 266 5.70e-72 223
Msa1337290 AT5G67500.2 40.523 306 152 4 1 279 1 303 1.31e-71 223
Msa1337290 AT3G49920.1 32.258 279 136 4 1 279 1 226 1.67e-40 140
Msa1337290 AT3G49920.2 43.011 93 51 1 1 93 1 91 1.84e-16 74.3
Msa1337290 AT3G49920.4 43.011 93 51 1 1 93 1 91 1.84e-16 74.3
Msa1337290 AT3G49920.3 45.679 81 44 0 1 81 1 81 1.50e-15 71.2

Find 112 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATAGGCAAACCAGTTTA+AGG 0.228425 tig0001526:+1218 None:intergenic
GATAGGGTTATGAGTGAATT+TGG 0.233277 tig0001526:+1308 None:intergenic
CAGACTACAAGCATGTTTCT+TGG 0.237224 tig0001526:-618 Msa1337290:three_prime_UTR
TTGTACTGCCATTCTATATC+TGG 0.249506 tig0001526:-992 Msa1337290:three_prime_UTR
ATTGGTTCACCTGCCAAATT+TGG 0.260825 tig0001526:-1260 Msa1337290:CDS
GGTTTAGTTCTCATTCATTA+TGG 0.299570 tig0001526:-5717 Msa1337290:exon
TGGAAGCAAAGATATATCTA+TGG 0.346298 tig0001526:-2931 Msa1337290:CDS
GCAGCAACTGTTAATCCATC+TGG 0.352067 tig0001526:+1470 None:intergenic
TTTCCTAGTGATTCATGGTC+AGG 0.356865 tig0001526:-945 Msa1337290:three_prime_UTR
AGAGAGAGCGAGACCAAATT+TGG 0.357430 tig0001526:+1247 None:intergenic
ACAAATTATACTGATTCCTT+TGG 0.365877 tig0001526:+1095 None:intergenic
CTCTCTCTCAAGCCTTAAAC+TGG 0.367778 tig0001526:-1230 Msa1337290:exon
CTGAGAACAGATTTACCTTT+GGG 0.368712 tig0001526:-1421 Msa1337290:CDS
GCAGCTATTGATTCAAGTAT+TGG 0.376139 tig0001526:-2993 Msa1337290:CDS
TGGAGTCATACTCGGCAGAT+AGG 0.385640 tig0001526:+1291 None:intergenic
TTGGAGCTTTCTGCTGCAAT+TGG 0.386691 tig0001526:-2951 Msa1337290:CDS
GGACACCGGGTAAATAAAAC+TGG 0.387694 tig0001526:-597 None:intergenic
ATAAGTGTTGCAGAGAAATC+TGG 0.396923 tig0001526:+2837 None:intergenic
TGTTTATGCAGGGCTGATAA+AGG 0.402787 tig0001526:-1533 Msa1337290:intron
CTTGAACCCAGCCCCTCAAT+TGG 0.403062 tig0001526:-2970 Msa1337290:CDS
ACGGAGTTTCTCACTGTTTG+TGG 0.405776 tig0001526:+5884 None:intergenic
GCCTCCACGCTCGTTGGCAT+TGG 0.411252 tig0001526:+1330 None:intergenic
TTCTGTAGATGAAGTGTTGA+AGG 0.412529 tig0001526:+839 None:intergenic
TCTTTAACCCTGTGGCTGTA+AGG 0.413704 tig0001526:+4129 None:intergenic
TCTGAGAACAGATTTACCTT+TGG 0.415880 tig0001526:-1422 Msa1337290:CDS
GAAAGCTCCAATTGAGGGGC+TGG 0.425247 tig0001526:+2963 None:intergenic
AGAGAAATCTGGTTTATTGA+AGG 0.430478 tig0001526:+2848 None:intergenic
CAAGAAACATGCTTGTAGTC+TGG 0.432639 tig0001526:+619 None:intergenic
AAACATCCCACCAGGGGTAA+TGG 0.433340 tig0001526:+1144 None:intergenic
TGGTTTATTGAAGGCAATCC+CGG 0.439965 tig0001526:+2857 None:intergenic
TACATTGTTGCCATTACCCC+TGG 0.440757 tig0001526:-1154 Msa1337290:three_prime_UTR
ATAGAATGATAAACCACAAT+TGG 0.444320 tig0001526:+863 None:intergenic
ACCTTTCCTGACTTGTGATC+GGG 0.446241 tig0001526:+3688 None:intergenic
TTAAGCCCTCTCATATCATA+AGG 0.449304 tig0001526:-1122 Msa1337290:three_prime_UTR
CACCTTTCCTGACTTGTGAT+CGG 0.452824 tig0001526:+3687 None:intergenic
ATTACCAATCCAGTGGAACT+TGG 0.458092 tig0001526:+5004 None:intergenic
CTATATCTGGCATGAGTTGT+GGG 0.458287 tig0001526:-979 Msa1337290:three_prime_UTR
AAGACTCGATTCAGCGATGA+TGG 0.459917 tig0001526:-1365 Msa1337290:CDS
ATATCTATGGGTGCTGAAGT+TGG 0.460121 tig0001526:-2918 Msa1337290:CDS
GGCATCTTACATTCATTATG+TGG 0.465201 tig0001526:-1498 Msa1337290:CDS
AGAATGGCAGTACAATAAAT+CGG 0.467685 tig0001526:+1000 None:intergenic
GATTCCAAGTTCCACTGGAT+TGG 0.477100 tig0001526:-5008 Msa1337290:intron
GTCGTTGAATAAGATTTGAT+AGG 0.482815 tig0001526:+1203 None:intergenic
AACAATGTAAAATGATAGAA+TGG 0.482971 tig0001526:+1168 None:intergenic
AATATACCCGATCACAAGTC+AGG 0.484667 tig0001526:-3694 Msa1337290:CDS
CATTCTCAAAATATAATGCC+GGG 0.487500 tig0001526:-2875 Msa1337290:CDS
CAAGCATGTTTCTTGGACAC+CGG 0.487657 tig0001526:-611 Msa1337290:three_prime_UTR
ATTCATGGTCAGGTGAATAG+TGG 0.489953 tig0001526:-935 Msa1337290:three_prime_UTR
GCCTGCAGACCTCTTGTACA+AGG 0.492635 tig0001526:-5062 Msa1337290:intron
TCTATATCTGGCATGAGTTG+TGG 0.496597 tig0001526:-980 Msa1337290:three_prime_UTR
TTCTCATTCATTATGGCTAA+CGG 0.496771 tig0001526:-5710 Msa1337290:exon
CAGCAGAAAGCTCCAATTGA+GGG 0.498390 tig0001526:+2958 None:intergenic
TCACAGGGCCTTACAGCCAC+AGG 0.502796 tig0001526:-4137 Msa1337290:intron
AGAAACGAGTAGCCAGGACT+TGG 0.506220 tig0001526:-5916 Msa1337290:five_prime_UTR
CTTCTCATATGAACCAATTG+TGG 0.508962 tig0001526:-876 Msa1337290:three_prime_UTR
GGAGTCATACTCGGCAGATA+GGG 0.510982 tig0001526:+1292 None:intergenic
TCATTCTCAAAATATAATGC+CGG 0.512651 tig0001526:-2876 Msa1337290:CDS
GTTTCTGATACAATAGCAAA+GGG 0.515203 tig0001526:+5933 None:intergenic
TGGCGGCGACGACCAAGTCC+TGG 0.516532 tig0001526:+5904 None:intergenic
CCACGCTCGTTGGCATTGGA+AGG 0.521657 tig0001526:+1334 None:intergenic
CCTTCCAATGCCAACGAGCG+TGG 0.522608 tig0001526:-1334 Msa1337290:CDS
AGTAGATGAGGTGCCGGAGA+TGG 0.523410 tig0001526:-746 Msa1337290:three_prime_UTR
CCAATCTCAGAAAACGGTGC+TGG 0.527039 tig0001526:+5686 None:intergenic
AATAAGAGTAGATGAGGTGC+CGG 0.530531 tig0001526:-752 Msa1337290:three_prime_UTR
TGTATCAGAAACGAGTAGCC+AGG 0.531157 tig0001526:-5922 Msa1337290:five_prime_UTR
AACTCATGCCAGATATAGAA+TGG 0.534188 tig0001526:+984 None:intergenic
AGAGCGAGACCAAATTTGGC+AGG 0.535679 tig0001526:+1251 None:intergenic
CAGTGGAACTTGGAATCGAC+AGG 0.536873 tig0001526:+5014 None:intergenic
AAAGCTCCAATTGAGGGGCT+GGG 0.537060 tig0001526:+2964 None:intergenic
CTGTCGATTCCAAGTTCCAC+TGG 0.545124 tig0001526:-5013 Msa1337290:CDS
ATTGTTGCCATTACCCCTGG+TGG 0.548194 tig0001526:-1151 Msa1337290:three_prime_UTR
TTAAACACGCTTTACAAGAG+TGG 0.548418 tig0001526:-4083 Msa1337290:CDS
CATTATGTGGACCGCCCAGA+TGG 0.549135 tig0001526:-1485 Msa1337290:CDS
GGTAAATCTGTTCTCAGAAG+AGG 0.550061 tig0001526:+1427 None:intergenic
TTACAGCCACAGGGTTAAAG+AGG 0.550287 tig0001526:-4127 Msa1337290:CDS
ATTTGTGAAATCTTCTAAAG+CGG 0.550399 tig0001526:-1078 Msa1337290:three_prime_UTR
GGAAGCAAAGATATATCTAT+GGG 0.558456 tig0001526:-2930 Msa1337290:CDS
CAGCAACTGTTAATCCATCT+GGG 0.562264 tig0001526:+1471 None:intergenic
AATTATAGTCCTTGTACAAG+AGG 0.562661 tig0001526:+5053 None:intergenic
GCAGCAGAAAGCTCCAATTG+AGG 0.563516 tig0001526:+2957 None:intergenic
GTTTACCTTATGATATGAGA+GGG 0.563723 tig0001526:+1117 None:intergenic
GGTTTACCTTATGATATGAG+AGG 0.564392 tig0001526:+1116 None:intergenic
TTGCTGCTGAACTCGCTCAC+AGG 0.569987 tig0001526:-1454 Msa1337290:CDS
AAGCATGTTTCTTGGACACC+GGG 0.581324 tig0001526:-610 Msa1337290:three_prime_UTR
GTGCCGGAGATGGATTCATA+TGG 0.587615 tig0001526:-736 Msa1337290:three_prime_UTR
CGTTTCTGATACAATAGCAA+AGG 0.588338 tig0001526:+5932 None:intergenic
AGTATGAATAAGAGTAGATG+AGG 0.588597 tig0001526:-758 Msa1337290:three_prime_UTR
ACACCATATGAATCCATCTC+CGG 0.591384 tig0001526:+733 None:intergenic
AATTTGGCCTCCACGCTCGT+TGG 0.596800 tig0001526:+1324 None:intergenic
AGGGCTTAAAACATCCCACC+AGG 0.602480 tig0001526:+1136 None:intergenic
GAGATTGGCAAAAGAGCAAG+AGG 0.602548 tig0001526:-5671 Msa1337290:intron
TCACCTGACCATGAATCACT+AGG 0.604045 tig0001526:+942 None:intergenic
CACAGGGCCTTACAGCCACA+GGG 0.608430 tig0001526:-4136 Msa1337290:intron
TTGTTGCCATTACCCCTGGT+GGG 0.614104 tig0001526:-1150 Msa1337290:three_prime_UTR
TGATAAAGGACAGTCTCTGA+AGG 0.622839 tig0001526:-1519 Msa1337290:CDS
GAATCGACAGGCTAAACTTG+TGG 0.624169 tig0001526:+5026 None:intergenic
TATTAACTGTGAGGTCCCAA+AGG 0.625879 tig0001526:+1406 None:intergenic
ACCCGATCACAAGTCAGGAA+AGG 0.634719 tig0001526:-3689 Msa1337290:intron
TTGATCCCTCTTTAACCCTG+TGG 0.639663 tig0001526:+4121 None:intergenic
GGCTTAAAACATCCCACCAG+GGG 0.642117 tig0001526:+1138 None:intergenic
CATATCATAAGGTAAACCAA+AGG 0.646778 tig0001526:-1111 Msa1337290:three_prime_UTR
CTTGAATCAATAGCTGCATG+AGG 0.648302 tig0001526:+2999 None:intergenic
TCCAATGCCAACGAGCGTGG+AGG 0.648958 tig0001526:-1331 Msa1337290:CDS
AGCAGAAAGCTCCAATTGAG+GGG 0.649829 tig0001526:+2959 None:intergenic
TACAGCCACAGGGTTAAAGA+GGG 0.657577 tig0001526:-4126 Msa1337290:CDS
GAGTTTCTCACTGTTTGTGG+CGG 0.662674 tig0001526:+5887 None:intergenic
AGGTGAATAGTGGAAGTCTG+AGG 0.681497 tig0001526:-925 Msa1337290:three_prime_UTR
GGTAAGAATTACCAATCCAG+TGG 0.685271 tig0001526:+4997 None:intergenic
GGGCTTAAAACATCCCACCA+GGG 0.701922 tig0001526:+1137 None:intergenic
AATCTTCTAAAGCGGCACAG+AGG 0.753740 tig0001526:-1070 Msa1337290:three_prime_UTR
TTTCTGATACAATAGCAAAG+GGG 0.780291 tig0001526:+5934 None:intergenic
CAACTGTTAATCCATCTGGG+CGG 0.787246 tig0001526:+1474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTCTAAAATATATTGA+TGG - tig0001526:1475-1494 Msa1337290:CDS 10.0%
!!! CTTTTATTTGATTATTATTT+TGG - tig0001526:4450-4469 Msa1337290:intron 10.0%
!!! TTTTTAAACAAATAAATCAA+CGG - tig0001526:4633-4652 Msa1337290:intron 10.0%
!!! TTAACTCAATCAAAATATTT+TGG + tig0001526:1253-1272 None:intergenic 15.0%
!! AATTTCAAATGTGATATAAT+GGG + tig0001526:1460-1479 None:intergenic 15.0%
!! AAATTTCAAATGTGATATAA+TGG + tig0001526:1461-1480 None:intergenic 15.0%
!! TTATCATATATGTTAAACAT+TGG - tig0001526:2050-2069 Msa1337290:intron 15.0%
!! TTATAAAATCAACTTTATCA+AGG + tig0001526:2211-2230 None:intergenic 15.0%
!!! TTTTAATGTATTGTAAAACA+AGG - tig0001526:2358-2377 Msa1337290:intron 15.0%
!! ATAAAAGGAATAATATTTGA+TGG + tig0001526:2592-2611 None:intergenic 15.0%
!! CCTATATTATCATATATAAA+AGG + tig0001526:2607-2626 None:intergenic 15.0%
!!! CCTTTTATATATGATAATAT+AGG - tig0001526:2604-2623 Msa1337290:intron 15.0%
!! AACTTCATAAAAATTAAAAC+TGG - tig0001526:2675-2694 Msa1337290:intron 15.0%
!!! TTTGGTTTAAGAAATATAAT+GGG + tig0001526:3833-3852 None:intergenic 15.0%
!!! TTTTTAACCAAAAAAAGTAA+AGG - tig0001526:3918-3937 Msa1337290:intron 15.0%
!!! TTTTAACCAAAAAAAGTAAA+GGG - tig0001526:3919-3938 Msa1337290:intron 15.0%
!! TTTAAATAAAAGTGAAAACA+GGG + tig0001526:3999-4018 None:intergenic 15.0%
!! ATTCTAGACAAATATTTAAA+AGG - tig0001526:4060-4079 Msa1337290:CDS 15.0%
!! TTCTAGACAAATATTTAAAA+GGG - tig0001526:4061-4080 Msa1337290:CDS 15.0%
!!! ATTACATTAATAATGGTTTT+AGG - tig0001526:4087-4106 Msa1337290:CDS 15.0%
!! AGATTTAAATAAGGAAAAAT+AGG + tig0001526:4143-4162 None:intergenic 15.0%
!! AGATTCAATAATATTATTCT+GGG + tig0001526:4169-4188 None:intergenic 15.0%
!! TAGATTCAATAATATTATTC+TGG + tig0001526:4170-4189 None:intergenic 15.0%
!!! GACTTTTTATTATAATCAAA+CGG + tig0001526:4564-4583 None:intergenic 15.0%
!!! AATTTAGATGTTTTATACTA+AGG - tig0001526:5800-5819 Msa1337290:intron 15.0%
!! AAATAAAGGATAAGTGAAAA+AGG + tig0001526:736-755 None:intergenic 20.0%
!! GAATCGCATAAAAAAAATAA+AGG + tig0001526:750-769 None:intergenic 20.0%
!!! CATATTTTTATTCAAACCTT+AGG - tig0001526:951-970 Msa1337290:three_prime_UTR 20.0%
!! TGTATTATCTTTGAATTTGT+TGG - tig0001526:2246-2265 Msa1337290:intron 20.0%
!! ACATCATTATAATTACAAGA+TGG + tig0001526:2788-2807 None:intergenic 20.0%
!! GAGATAGATAATTAAATGTA+AGG + tig0001526:3030-3049 None:intergenic 20.0%
!!! TTGTTATTTGCATATTATGT+TGG - tig0001526:3172-3191 Msa1337290:intron 20.0%
!! GGTAAAAAATTGTCAAATAT+AGG + tig0001526:3414-3433 None:intergenic 20.0%
!!! CTTTGGTTTAAGAAATATAA+TGG + tig0001526:3834-3853 None:intergenic 20.0%
!!! CAGTATCATAATTTGTTATT+TGG - tig0001526:3892-3911 Msa1337290:intron 20.0%
!! CTTTAAATAAAAGTGAAAAC+AGG + tig0001526:4000-4019 None:intergenic 20.0%
!! AGGGTAAATTACATTAATAA+TGG - tig0001526:4080-4099 Msa1337290:CDS 20.0%
!! AATAAGGAAAAATAGGTAAT+TGG + tig0001526:4136-4155 None:intergenic 20.0%
!!! ACTTGTACAAACAATTTTTT+TGG + tig0001526:4791-4810 None:intergenic 20.0%
!!! TTTTACAGAAAATATTGCAA+CGG - tig0001526:4851-4870 Msa1337290:intron 20.0%
!! AAGGAAAAGTAAAGAATATA+CGG + tig0001526:4916-4935 None:intergenic 20.0%
!! AAAGTAAGACACTAAAAAAA+AGG + tig0001526:4935-4954 None:intergenic 20.0%
!! AACAATGTAAAATGATAGAA+TGG + tig0001526:5420-5439 None:intergenic 20.0%
!!! AGAGTTAAGTTGTCAATTTT+CGG + tig0001526:832-851 None:intergenic 25.0%
! TTATTCAAACCTTAGGTTTA+AGG - tig0001526:958-977 Msa1337290:three_prime_UTR 25.0%
! TATTCAAACCTTAGGTTTAA+GGG - tig0001526:959-978 Msa1337290:three_prime_UTR 25.0%
! GATTAAAAAGGTTTCTCTAA+AGG + tig0001526:1379-1398 None:intergenic 25.0%
!! TGGTTAAACATCTAGATTTT+TGG - tig0001526:1414-1433 Msa1337290:CDS 25.0%
!! GGTTAAACATCTAGATTTTT+GGG - tig0001526:1415-1434 Msa1337290:CDS 25.0%
!!! GTACTAAGTTGTTAGTTTTA+TGG - tig0001526:1497-1516 Msa1337290:CDS 25.0%
!! ATTGATAATCGTTGAAAAGT+GGG + tig0001526:1613-1632 None:intergenic 25.0%
!! TATTGATAATCGTTGAAAAG+TGG + tig0001526:1614-1633 None:intergenic 25.0%
! AAGAGAGAAAAATAGACAAA+TGG + tig0001526:1798-1817 None:intergenic 25.0%
! TTAAATGTGTCAATCAATGA+TGG + tig0001526:1891-1910 None:intergenic 25.0%
!!! AATCACTGTTTCTTCTATTT+TGG - tig0001526:2015-2034 Msa1337290:intron 25.0%
!!! ATCACTGTTTCTTCTATTTT+GGG - tig0001526:2016-2035 Msa1337290:intron 25.0%
! AAAATCAACTTTATCAAGGA+AGG + tig0001526:2207-2226 None:intergenic 25.0%
!!! ATTATCTTTGAATTTGTTGG+TGG - tig0001526:2249-2268 Msa1337290:intron 25.0%
! TTATCGTTTATGTATTCTCA+TGG - tig0001526:2273-2292 Msa1337290:intron 25.0%
! TATCGTTTATGTATTCTCAT+GGG - tig0001526:2274-2293 Msa1337290:intron 25.0%
!! GGAAAATTGAATTTGAAATC+AGG + tig0001526:2425-2444 None:intergenic 25.0%
!! AATTCAATTTTCCATTTCAC+AGG - tig0001526:2432-2451 Msa1337290:intron 25.0%
!! ATTCAATTTTCCATTTCACA+GGG - tig0001526:2433-2452 Msa1337290:intron 25.0%
! TTTACTAAGTTATTAACCAC+TGG + tig0001526:2731-2750 None:intergenic 25.0%
!!! TACTTTTTTACTATGGGAAA+GGG + tig0001526:2859-2878 None:intergenic 25.0%
! GTTTCTTAAGACTGAATTTA+TGG - tig0001526:2962-2981 Msa1337290:CDS 25.0%
! CATTTAATTATCTATCTCTG+TGG - tig0001526:3032-3051 Msa1337290:intron 25.0%
!! CTTTATCATCATTGATAGTA+TGG + tig0001526:3092-3111 None:intergenic 25.0%
! TAAGCTCTTTAGTCAATAAA+AGG - tig0001526:3121-3140 Msa1337290:intron 25.0%
! AAGCTCTTTAGTCAATAAAA+GGG - tig0001526:3122-3141 Msa1337290:intron 25.0%
! TTACAGTTATTAATGATTGC+TGG + tig0001526:3322-3341 None:intergenic 25.0%
! CTCAAGTAAAATCATTTCAT+CGG + tig0001526:3347-3366 None:intergenic 25.0%
! TCATTCTCAAAATATAATGC+CGG - tig0001526:3709-3728 Msa1337290:CDS 25.0%
!!! TGTTTTTAGTACTATTTTCC+TGG - tig0001526:3779-3798 Msa1337290:intron 25.0%
! ATGAATTATGATACTTAACC+AGG + tig0001526:3800-3819 None:intergenic 25.0%
! ATATCATGTTTCTTAAACCA+AGG + tig0001526:3948-3967 None:intergenic 25.0%
! TTGGTTTAAGAAACATGATA+TGG - tig0001526:3947-3966 Msa1337290:intron 25.0%
!! TTAAATTTTCTACGAACCTT+GGG - tig0001526:4416-4435 Msa1337290:intron 25.0%
! AAAAGAATTGAAATATCCCA+AGG + tig0001526:4435-4454 None:intergenic 25.0%
!!! TTGATTATTATTTTGGAGAG+AGG - tig0001526:4457-4476 Msa1337290:intron 25.0%
! ATCTAAGTCCGATTAAAAAA+GGG - tig0001526:4512-4531 Msa1337290:intron 25.0%
! AACTATCTCCATATATCAAA+GGG + tig0001526:4716-4735 None:intergenic 25.0%
! AAACTATCTCCATATATCAA+AGG + tig0001526:4717-4736 None:intergenic 25.0%
! TATGACTCCAAAAAAATCAT+TGG - tig0001526:5307-5326 Msa1337290:intron 25.0%
!!! ACAAATTATACTGATTCCTT+TGG + tig0001526:5493-5512 None:intergenic 25.0%
!! ATTTGTGAAATCTTCTAAAG+CGG - tig0001526:5507-5526 Msa1337290:intron 25.0%
!! TTATGCAAGTTTTCAAAACT+GGG + tig0001526:5547-5566 None:intergenic 25.0%
!! ATTATGCAAGTTTTCAAAAC+TGG + tig0001526:5548-5567 None:intergenic 25.0%
! ATAGAATGATAAACCACAAT+TGG + tig0001526:5725-5744 None:intergenic 25.0%
!! TATGTATTATCTTTTTGACG+TGG - tig0001526:5894-5913 Msa1337290:intron 25.0%
TTTCTGATACAATAGCAAAG+GGG + tig0001526:654-673 None:intergenic 30.0%
GTTTCTGATACAATAGCAAA+GGG + tig0001526:655-674 None:intergenic 30.0%
ATTCAAAACATACGAACGTT+TGG - tig0001526:804-823 Msa1337290:three_prime_UTR 30.0%
GAAAATTGACAACTTAACTC+TGG - tig0001526:831-850 Msa1337290:three_prime_UTR 30.0%
!! GGTTTAGTTCTCATTCATTA+TGG - tig0001526:868-887 Msa1337290:three_prime_UTR 30.0%
TTCTCATTCATTATGGCTAA+CGG - tig0001526:875-894 Msa1337290:three_prime_UTR 30.0%
TATCCTAATGTAACTAACGA+GGG + tig0001526:1087-1106 None:intergenic 30.0%
ATATCCTAATGTAACTAACG+AGG + tig0001526:1088-1107 None:intergenic 30.0%
TCGTTAGTTACATTAGGATA+TGG - tig0001526:1087-1106 Msa1337290:three_prime_UTR 30.0%
GTGACTGCTAATGATTAAAA+AGG + tig0001526:1391-1410 None:intergenic 30.0%
AAATCTAGATGTTTAACCAC+AGG + tig0001526:1413-1432 None:intergenic 30.0%
AATTATAGTCCTTGTACAAG+AGG + tig0001526:1535-1554 None:intergenic 30.0%
! TTGATAATCGTTGAAAAGTG+GGG + tig0001526:1612-1631 None:intergenic 30.0%
TATGGCATATTCAAGCAAAA+AGG + tig0001526:1671-1690 None:intergenic 30.0%
CACATTAGTGCAATATTTGA+CGG + tig0001526:2162-2181 None:intergenic 30.0%
ATCGTTTATGTATTCTCATG+GGG - tig0001526:2275-2294 Msa1337290:intron 30.0%
!!! AAGAGGGATCAATTTTTTGT+CGG - tig0001526:2475-2494 Msa1337290:intron 30.0%
TATTAAGAGAAGTAGCACTA+CGG + tig0001526:2635-2654 None:intergenic 30.0%
! AAAACTGGTTCAGTTATGTA+TGG - tig0001526:2690-2709 Msa1337290:intron 30.0%
GATGTTTATGTGATTTACTC+AGG - tig0001526:2803-2822 Msa1337290:intron 30.0%
!!! CTACTTTTTTACTATGGGAA+AGG + tig0001526:2860-2879 None:intergenic 30.0%
!!! CAACGCTACTTTTTTACTAT+GGG + tig0001526:2865-2884 None:intergenic 30.0%
!!! TCAACGCTACTTTTTTACTA+TGG + tig0001526:2866-2885 None:intergenic 30.0%
! GATAGTATGGATTAAATTCC+AGG + tig0001526:3079-3098 None:intergenic 30.0%
ACAACTTTCAGCATAACTTA+AGG + tig0001526:3156-3175 None:intergenic 30.0%
! AGATATGAATTTTGTGTGTG+TGG - tig0001526:3256-3275 Msa1337290:intron 30.0%
! GATATGAATTTTGTGTGTGT+GGG - tig0001526:3257-3276 Msa1337290:intron 30.0%
! ATATGAATTTTGTGTGTGTG+GGG - tig0001526:3258-3277 Msa1337290:intron 30.0%
CATATGCACTGTATTTACTT+TGG - tig0001526:3503-3522 Msa1337290:intron 30.0%
TGGAAGCAAAGATATATCTA+TGG - tig0001526:3654-3673 Msa1337290:intron 30.0%
GGAAGCAAAGATATATCTAT+GGG - tig0001526:3655-3674 Msa1337290:intron 30.0%
!! ATATTTTGAGAATGAAGCAG+AGG + tig0001526:3704-3723 None:intergenic 30.0%
CATTCTCAAAATATAATGCC+GGG - tig0001526:3710-3729 Msa1337290:CDS 30.0%
! AGAGAAATCTGGTTTATTGA+AGG + tig0001526:3740-3759 None:intergenic 30.0%
! GTTTATTGAAGGCATAGATA+TGG + tig0001526:3860-3879 None:intergenic 30.0%
TGGTTTCACTAATCATTATG+TGG - tig0001526:3967-3986 Msa1337290:intron 30.0%
GGTTTCACTAATCATTATGT+GGG - tig0001526:3968-3987 Msa1337290:intron 30.0%
TCTGGGCAAAGATTTAAATA+AGG + tig0001526:4152-4171 None:intergenic 30.0%
TGTTCACTACTATCAACAAT+TGG + tig0001526:4200-4219 None:intergenic 30.0%
TAACAGTGTAGAGAATTGTA+TGG - tig0001526:4387-4406 Msa1337290:intron 30.0%
! GTTAAATTTTCTACGAACCT+TGG - tig0001526:4415-4434 Msa1337290:intron 30.0%
CATCTAAGTCCGATTAAAAA+AGG - tig0001526:4511-4530 Msa1337290:intron 30.0%
!!! TTGGTGAACCCTTTTTTAAT+CGG + tig0001526:4523-4542 None:intergenic 30.0%
GTTATCAATGAGGGAAATAT+TGG + tig0001526:4542-4561 None:intergenic 30.0%
AATCAAACGGTTATCAATGA+GGG + tig0001526:4551-4570 None:intergenic 30.0%
TAATCAAACGGTTATCAATG+AGG + tig0001526:4552-4571 None:intergenic 30.0%
TAAATCAACGGTTAGTGAAA+AGG - tig0001526:4645-4664 Msa1337290:intron 30.0%
ACTATCTCCATATATCAAAG+GGG + tig0001526:4715-4734 None:intergenic 30.0%
! TCTTTTCTTTCAGAAGTTGT+AGG - tig0001526:4977-4996 Msa1337290:intron 30.0%
GCAAATGTGTTTACTTACTT+TGG - tig0001526:5005-5024 Msa1337290:intron 30.0%
ATGTGTTTACTTACTTTGGT+AGG - tig0001526:5009-5028 Msa1337290:CDS 30.0%
TGTGTTTACTTACTTTGGTA+GGG - tig0001526:5010-5029 Msa1337290:CDS 30.0%
! TTTTGGATCTATTAACTGTG+AGG + tig0001526:5191-5210 None:intergenic 30.0%
!!! GATTTTTTTGGAGTCATACT+CGG + tig0001526:5305-5324 None:intergenic 30.0%
!!! AGGTGAACCAATGATTTTTT+TGG + tig0001526:5317-5336 None:intergenic 30.0%
GTCGTTGAATAAGATTTGAT+AGG + tig0001526:5385-5404 None:intergenic 30.0%
GTTTACCTTATGATATGAGA+GGG + tig0001526:5471-5490 None:intergenic 30.0%
CATATCATAAGGTAAACCAA+AGG - tig0001526:5474-5493 Msa1337290:intron 30.0%
AGAATGGCAGTACAATAAAT+CGG + tig0001526:5588-5607 None:intergenic 30.0%
!!! GTTTTTTTCCTAGTGATTCA+TGG - tig0001526:5635-5654 Msa1337290:intron 30.0%
AGTATGAATAAGAGTAGATG+AGG - tig0001526:5827-5846 Msa1337290:intron 30.0%
! TTTTTGACGTGGTTACATAT+TGG - tig0001526:5905-5924 Msa1337290:five_prime_UTR 30.0%
!!! CATTTTTTTATGGAGCTGCT+GGG + tig0001526:621-640 None:intergenic 35.0%
!!! CCAGCTACTGCATTTTTTTA+TGG + tig0001526:631-650 None:intergenic 35.0%
CCATAAAAAAATGCAGTAGC+TGG - tig0001526:628-647 Msa1337290:three_prime_UTR 35.0%
CGTTTCTGATACAATAGCAA+AGG + tig0001526:656-675 None:intergenic 35.0%
ATAAGTGAAAAAGGAAAGCG+TGG + tig0001526:727-746 None:intergenic 35.0%
! CTTTTGCCAATCTCAGAAAA+CGG + tig0001526:908-927 None:intergenic 35.0%
!! AAAAGAGCAAGAGGTATTAC+AGG - tig0001526:923-942 Msa1337290:three_prime_UTR 35.0%
GAATAAGTCCCTTAAACCTA+AGG + tig0001526:970-989 None:intergenic 35.0%
AACTAACGAGGGATCTATTT+AGG + tig0001526:1076-1095 None:intergenic 35.0%
AGTGTTGTCAAATATCAGCA+TGG - tig0001526:1112-1131 Msa1337290:three_prime_UTR 35.0%
TGTGATGTATACTTGAGTGA+GGG + tig0001526:1209-1228 None:intergenic 35.0%
ATGTGATGTATACTTGAGTG+AGG + tig0001526:1210-1229 None:intergenic 35.0%
GAGAAATTCTGCAATGTTGT+AGG + tig0001526:1290-1309 None:intergenic 35.0%
CTGAGAGAATGAGTATGAAA+AGG - tig0001526:1347-1366 Msa1337290:CDS 35.0%
!!! ACATCTAGATTTTTGGGTGT+CGG - tig0001526:1421-1440 Msa1337290:CDS 35.0%
TACAATTCCATATGGTAGGA+GGG + tig0001526:2139-2158 None:intergenic 35.0%
TTTGACGGTACAATTCCATA+TGG + tig0001526:2147-2166 None:intergenic 35.0%
CGTCAAATATTGCACTAATG+TGG - tig0001526:2160-2179 Msa1337290:intron 35.0%
TTTATGTATTCTCATGGGGA+TGG - tig0001526:2279-2298 Msa1337290:intron 35.0%
TTATGTATTCTCATGGGGAT+GGG - tig0001526:2280-2299 Msa1337290:intron 35.0%
CTAAAGAGGATGCATATTTG+TGG - tig0001526:2305-2324 Msa1337290:intron 35.0%
TTAAACACGCTTTACAAGAG+TGG - tig0001526:2502-2521 Msa1337290:intron 35.0%
ATTAAGAGAAGTAGCACTAC+GGG + tig0001526:2634-2653 None:intergenic 35.0%
! TATGAATTTTGTGTGTGTGG+GGG - tig0001526:3259-3278 Msa1337290:intron 35.0%
!! CAACATTATGGGTTTTGGTA+GGG + tig0001526:3435-3454 None:intergenic 35.0%
! TGCAAAGGATCCTTTTCATA+TGG - tig0001526:3471-3490 Msa1337290:intron 35.0%
GTCTTGCTAACCATATGAAA+AGG + tig0001526:3484-3503 None:intergenic 35.0%
CTGTGGAATATTATGTCAGT+TGG - tig0001526:3546-3565 Msa1337290:intron 35.0%
!! GCAGCTATTGATTCAAGTAT+TGG - tig0001526:3592-3611 Msa1337290:intron 35.0%
! ATAAGTGTTGCAGAGAAATC+TGG + tig0001526:3751-3770 None:intergenic 35.0%
AGGCATAGATATGGTTTCTT+TGG + tig0001526:3851-3870 None:intergenic 35.0%
GCCTTCAATAAACCATATCA+CGG - tig0001526:3867-3886 Msa1337290:intron 35.0%
ACCGTGATATGGTTTATTGA+AGG + tig0001526:3871-3890 None:intergenic 35.0%
TATGATACTGAACCGTGATA+TGG + tig0001526:3882-3901 None:intergenic 35.0%
!!! AGGAAGCCCTTTACTTTTTT+TGG + tig0001526:3928-3947 None:intergenic 35.0%
AAAAAAGTAAAGGGCTTCCT+TGG - tig0001526:3928-3947 Msa1337290:intron 35.0%
ACTAATTGCATCGCACTAAT+AGG - tig0001526:4259-4278 Msa1337290:intron 35.0%
AAGCCAGAAGATATATGTGT+GGG + tig0001526:4342-4361 None:intergenic 35.0%
AAAGCCAGAAGATATATGTG+TGG + tig0001526:4343-4362 None:intergenic 35.0%
AAGGCATATTGCGTTGAAAA+TGG + tig0001526:4684-4703 None:intergenic 35.0%
TTATGACTGATGAAGAGATG+TGG + tig0001526:4750-4769 None:intergenic 35.0%
TACAGAAAATATTGCAACGG+AGG - tig0001526:4854-4873 Msa1337290:intron 35.0%
TCCATGTGCGTATATATTGA+TGG - tig0001526:4889-4908 Msa1337290:intron 35.0%
TCCATCAATATATACGCACA+TGG + tig0001526:4893-4912 None:intergenic 35.0%
TTTGGTAGGGTAACAAAACA+TGG - tig0001526:5023-5042 Msa1337290:CDS 35.0%
GGCATCTTACATTCATTATG+TGG - tig0001526:5087-5106 Msa1337290:intron 35.0%
TCTGAGAACAGATTTACCTT+TGG - tig0001526:5163-5182 Msa1337290:intron 35.0%
CTGAGAACAGATTTACCTTT+GGG - tig0001526:5164-5183 Msa1337290:intron 35.0%
! CGAGTCTTCAAAACTGTTTT+TGG + tig0001526:5208-5227 None:intergenic 35.0%
GATAGGGTTATGAGTGAATT+TGG + tig0001526:5280-5299 None:intergenic 35.0%
TTGATAGGCAAACCAGTTTA+AGG + tig0001526:5370-5389 None:intergenic 35.0%
TTAAGCCCTCTCATATCATA+AGG - tig0001526:5463-5482 Msa1337290:intron 35.0%
GGTTTACCTTATGATATGAG+AGG + tig0001526:5472-5491 None:intergenic 35.0%
TTGTACTGCCATTCTATATC+TGG - tig0001526:5593-5612 Msa1337290:intron 35.0%
AACTCATGCCAGATATAGAA+TGG + tig0001526:5604-5623 None:intergenic 35.0%
CTTCTCATATGAACCAATTG+TGG - tig0001526:5709-5728 Msa1337290:exon 35.0%
!! TTCTGTAGATGAAGTGTTGA+AGG + tig0001526:5749-5768 None:intergenic 35.0%
!!! GCATTTTTTTATGGAGCTGC+TGG + tig0001526:622-641 None:intergenic 40.0%
!!! AACTCTGGTTTTGCATTTGC+AGG - tig0001526:846-865 Msa1337290:three_prime_UTR 40.0%
!!! ACTCTGGTTTTGCATTTGCA+GGG - tig0001526:847-866 Msa1337290:three_prime_UTR 40.0%
GGATCTATTTAGGCTCTGTT+TGG + tig0001526:1066-1085 None:intergenic 40.0%
GATCCCTCGTTAGTTACATT+AGG - tig0001526:1081-1100 Msa1337290:three_prime_UTR 40.0%
GTGATGTATACTTGAGTGAG+GGG + tig0001526:1208-1227 None:intergenic 40.0%
TCACTGATGTATTAATCGCC+AGG - tig0001526:1321-1340 Msa1337290:CDS 40.0%
CACTGATGTATTAATCGCCA+GGG - tig0001526:1322-1341 Msa1337290:CDS 40.0%
TAATCATTAGCAGTCACCTG+TGG - tig0001526:1394-1413 Msa1337290:CDS 40.0%
ATTACCAATCCAGTGGAACT+TGG + tig0001526:1584-1603 None:intergenic 40.0%
GGTAAGAATTACCAATCCAG+TGG + tig0001526:1591-1610 None:intergenic 40.0%
TATATGTGCGACTGTGTGAT+TGG + tig0001526:1697-1716 None:intergenic 40.0%
ACAATTCCATATGGTAGGAG+GGG + tig0001526:2138-2157 None:intergenic 40.0%
GTACAATTCCATATGGTAGG+AGG + tig0001526:2140-2159 None:intergenic 40.0%
ACGGTACAATTCCATATGGT+AGG + tig0001526:2143-2162 None:intergenic 40.0%
TTGCACTAATGTGGAGAGAA+CGG - tig0001526:2169-2188 Msa1337290:intron 40.0%
AGGATGCATATTTGTGGCAA+TGG - tig0001526:2311-2330 Msa1337290:intron 40.0%
GGATGCATATTTGTGGCAAT+GGG - tig0001526:2312-2331 Msa1337290:intron 40.0%
GTGATTTGAACTGAAACCAG+TGG - tig0001526:2712-2731 Msa1337290:intron 40.0%
AATATACCCGATCACAAGTC+AGG - tig0001526:2891-2910 Msa1337290:CDS 40.0%
TGCAGTGTTTGTATTTGCTC+TGG - tig0001526:2986-3005 Msa1337290:CDS 40.0%
GTAGACAGATTGTCTCTTTG+TGG - tig0001526:3287-3306 Msa1337290:intron 40.0%
!! CCAACATTATGGGTTTTGGT+AGG + tig0001526:3436-3455 None:intergenic 40.0%
CCTACCAAAACCCATAATGT+TGG - tig0001526:3433-3452 Msa1337290:intron 40.0%
! CTCACCAACATTATGGGTTT+TGG + tig0001526:3440-3459 None:intergenic 40.0%
CAAAACCCATAATGTTGGTG+AGG - tig0001526:3438-3457 Msa1337290:intron 40.0%
CTGAACCTCACCAACATTAT+GGG + tig0001526:3446-3465 None:intergenic 40.0%
CTTGAATCAATAGCTGCATG+AGG + tig0001526:3589-3608 None:intergenic 40.0%
!! ATATCTATGGGTGCTGAAGT+TGG - tig0001526:3667-3686 Msa1337290:intron 40.0%
TGGTTTATTGAAGGCAATCC+CGG + tig0001526:3731-3750 None:intergenic 40.0%
AGACCCACACATATATCTTC+TGG - tig0001526:4336-4355 Msa1337290:intron 40.0%
ATATTGCAACGGAGGTTTAG+AGG - tig0001526:4862-4881 Msa1337290:intron 40.0%
TATTGCAACGGAGGTTTAGA+GGG - tig0001526:4863-4882 Msa1337290:intron 40.0%
ATGGACACACTGTTTATGCA+GGG - tig0001526:5042-5061 Msa1337290:CDS 40.0%
TGTTTATGCAGGGCTGATAA+AGG - tig0001526:5052-5071 Msa1337290:CDS 40.0%
TGATAAAGGACAGTCTCTGA+AGG - tig0001526:5066-5085 Msa1337290:intron 40.0%
CAGCAACTGTTAATCCATCT+GGG + tig0001526:5117-5136 None:intergenic 40.0%
GGTAAATCTGTTCTCAGAAG+AGG + tig0001526:5161-5180 None:intergenic 40.0%
TATTAACTGTGAGGTCCCAA+AGG + tig0001526:5182-5201 None:intergenic 40.0%
! ATTGGTTCACCTGCCAAATT+TGG - tig0001526:5325-5344 Msa1337290:intron 40.0%
TCTATATCTGGCATGAGTTG+TGG - tig0001526:5605-5624 Msa1337290:intron 40.0%
CTATATCTGGCATGAGTTGT+GGG - tig0001526:5606-5625 Msa1337290:intron 40.0%
TTTCCTAGTGATTCATGGTC+AGG - tig0001526:5640-5659 Msa1337290:intron 40.0%
ATTCATGGTCAGGTGAATAG+TGG - tig0001526:5650-5669 Msa1337290:intron 40.0%
AATAAGAGTAGATGAGGTGC+CGG - tig0001526:5833-5852 Msa1337290:intron 40.0%
ACACCATATGAATCCATCTC+CGG + tig0001526:5855-5874 None:intergenic 40.0%
CAAGAAACATGCTTGTAGTC+TGG + tig0001526:5969-5988 None:intergenic 40.0%
CAGACTACAAGCATGTTTCT+TGG - tig0001526:5967-5986 Msa1337290:five_prime_UTR 40.0%
TGTATCAGAAACGAGTAGCC+AGG - tig0001526:663-682 Msa1337290:three_prime_UTR 45.0%
GAGTTTCTCACTGTTTGTGG+CGG + tig0001526:701-720 None:intergenic 45.0%
ACGGAGTTTCTCACTGTTTG+TGG + tig0001526:704-723 None:intergenic 45.0%
! GTGAAAAAGGAAAGCGTGGA+CGG + tig0001526:723-742 None:intergenic 45.0%
GAGATTGGCAAAAGAGCAAG+AGG - tig0001526:914-933 Msa1337290:three_prime_UTR 45.0%
ATCAGCATGGAAGATTGCAG+TGG - tig0001526:1125-1144 Msa1337290:three_prime_UTR 45.0%
TGGAAGATTGCAGTGGTTGA+TGG - tig0001526:1132-1151 Msa1337290:three_prime_UTR 45.0%
GAATCGACAGGCTAAACTTG+TGG + tig0001526:1562-1581 None:intergenic 45.0%
GATTCCAAGTTCCACTGGAT+TGG - tig0001526:1577-1596 Msa1337290:intron 45.0%
CGACTGTGTGATTGGAACTA+TGG + tig0001526:1689-1708 None:intergenic 45.0%
CAATTCCATATGGTAGGAGG+GGG + tig0001526:2137-2156 None:intergenic 45.0%
GTGGCAATGGGAAACTTGTA+TGG - tig0001526:2324-2343 Msa1337290:intron 45.0%
TCTTTAACCCTGTGGCTGTA+AGG + tig0001526:2459-2478 None:intergenic 45.0%
TTACAGCCACAGGGTTAAAG+AGG - tig0001526:2458-2477 Msa1337290:intron 45.0%
TACAGCCACAGGGTTAAAGA+GGG - tig0001526:2459-2478 Msa1337290:intron 45.0%
TTGATCCCTCTTTAACCCTG+TGG + tig0001526:2467-2486 None:intergenic 45.0%
! ACCTTTCCTGACTTGTGATC+GGG + tig0001526:2900-2919 None:intergenic 45.0%
! CACCTTTCCTGACTTGTGAT+CGG + tig0001526:2901-2920 None:intergenic 45.0%
TGAAACTGCCATTCCAGTCA+TGG - tig0001526:3378-3397 Msa1337290:intron 45.0%
GCTGAACCTCACCAACATTA+TGG + tig0001526:3447-3466 None:intergenic 45.0%
TGAGGTTCAGCTTCATGCAA+AGG - tig0001526:3456-3475 Msa1337290:intron 45.0%
AGCAGAAAGCTCCAATTGAG+GGG + tig0001526:3629-3648 None:intergenic 45.0%
CAGCAGAAAGCTCCAATTGA+GGG + tig0001526:3630-3649 None:intergenic 45.0%
TTGGAGCTTTCTGCTGCAAT+TGG - tig0001526:3634-3653 Msa1337290:intron 45.0%
ACACGATGAACACCTCTGAA+TGG - tig0001526:4485-4504 Msa1337290:intron 45.0%
ACTTAGATGCTGCCATTCAG+AGG + tig0001526:4500-4519 None:intergenic 45.0%
TATCAAAGGGGTCTGGTCTA+AGG + tig0001526:4703-4722 None:intergenic 45.0%
GACCAGACCCCTTTGATATA+TGG - tig0001526:4705-4724 Msa1337290:intron 45.0%
CTCCATATATCAAAGGGGTC+TGG + tig0001526:4710-4729 None:intergenic 45.0%
CATGGACACACTGTTTATGC+AGG - tig0001526:5041-5060 Msa1337290:CDS 45.0%
CAACTGTTAATCCATCTGGG+CGG + tig0001526:5114-5133 None:intergenic 45.0%
GCAGCAACTGTTAATCCATC+TGG + tig0001526:5118-5137 None:intergenic 45.0%
AAGACTCGATTCAGCGATGA+TGG - tig0001526:5220-5239 Msa1337290:intron 45.0%
AGAGAGAGCGAGACCAAATT+TGG + tig0001526:5341-5360 None:intergenic 45.0%
CTCTCTCTCAAGCCTTAAAC+TGG - tig0001526:5355-5374 Msa1337290:intron 45.0%
TACATTGTTGCCATTACCCC+TGG - tig0001526:5431-5450 Msa1337290:intron 45.0%
!! AATCTTCTAAAGCGGCACAG+AGG - tig0001526:5515-5534 Msa1337290:intron 45.0%
TCACCTGACCATGAATCACT+AGG + tig0001526:5646-5665 None:intergenic 45.0%
! AGGTGAATAGTGGAAGTCTG+AGG - tig0001526:5660-5679 Msa1337290:intron 45.0%
CAAGCATGTTTCTTGGACAC+CGG - tig0001526:5974-5993 Msa1337290:five_prime_UTR 45.0%
AAGCATGTTTCTTGGACACC+GGG - tig0001526:5975-5994 Msa1337290:five_prime_UTR 45.0%
!! ATTTATTTGTTTAAAAAAAA+AGG + tig0001526:4630-4649 None:intergenic 5.0%
AGAAACGAGTAGCCAGGACT+TGG - tig0001526:669-688 Msa1337290:three_prime_UTR 50.0%
CCAATCTCAGAAAACGGTGC+TGG + tig0001526:902-921 None:intergenic 50.0%
!!! CCAGCACCGTTTTCTGAGAT+TGG - tig0001526:899-918 Msa1337290:three_prime_UTR 50.0%
TACTCATTCTCTCAGAGCCC+TGG + tig0001526:1342-1361 None:intergenic 50.0%
TCCTTGTACAAGAGGTCTGC+AGG + tig0001526:1527-1546 None:intergenic 50.0%
CAGTGGAACTTGGAATCGAC+AGG + tig0001526:1574-1593 None:intergenic 50.0%
!! CTGTCGATTCCAAGTTCCAC+TGG - tig0001526:1572-1591 Msa1337290:intron 50.0%
ACCCGATCACAAGTCAGGAA+AGG - tig0001526:2896-2915 Msa1337290:CDS 50.0%
TCATGAATGCACTGCTCTCC+TGG - tig0001526:3058-3077 Msa1337290:intron 50.0%
! TTTTGTGTGTGTGGGGGATG+TGG - tig0001526:3265-3284 Msa1337290:intron 50.0%
TCTTACGACGCATCTCACTG+TGG - tig0001526:3529-3548 Msa1337290:intron 50.0%
AAAGCTCCAATTGAGGGGCT+GGG + tig0001526:3624-3643 None:intergenic 50.0%
GCAGCAGAAAGCTCCAATTG+AGG + tig0001526:3631-3650 None:intergenic 50.0%
! GGGTCTTCGTTGATGAACTG+TGG + tig0001526:4322-4341 None:intergenic 50.0%
GGAGTCATACTCGGCAGATA+GGG + tig0001526:5296-5315 None:intergenic 50.0%
TGGAGTCATACTCGGCAGAT+AGG + tig0001526:5297-5316 None:intergenic 50.0%
AGAGCGAGACCAAATTTGGC+AGG + tig0001526:5337-5356 None:intergenic 50.0%
ATTGTTGCCATTACCCCTGG+TGG - tig0001526:5434-5453 Msa1337290:intron 50.0%
TTGTTGCCATTACCCCTGGT+GGG - tig0001526:5435-5454 Msa1337290:intron 50.0%
AAACATCCCACCAGGGGTAA+TGG + tig0001526:5444-5463 None:intergenic 50.0%
GGCTTAAAACATCCCACCAG+GGG + tig0001526:5450-5469 None:intergenic 50.0%
GGGCTTAAAACATCCCACCA+GGG + tig0001526:5451-5470 None:intergenic 50.0%
AGGGCTTAAAACATCCCACC+AGG + tig0001526:5452-5471 None:intergenic 50.0%
! GTGCCGGAGATGGATTCATA+TGG - tig0001526:5849-5868 Msa1337290:intron 50.0%
TGCTGCGACGCAAATCGAAC+TGG + tig0001526:772-791 None:intergenic 55.0%
GCCTGCAGACCTCTTGTACA+AGG - tig0001526:1523-1542 Msa1337290:CDS 55.0%
ATGGTAGGAGGGGGTAGGAT+TGG + tig0001526:2128-2147 None:intergenic 55.0%
TCCTACCCCCTCCTACCATA+TGG - tig0001526:2129-2148 Msa1337290:intron 55.0%
TCCATATGGTAGGAGGGGGT+AGG + tig0001526:2133-2152 None:intergenic 55.0%
CATGGGGATGGGTGCTAAAG+AGG - tig0001526:2291-2310 Msa1337290:intron 55.0%
GGCTGTAAGGCCCTGTGAAA+TGG + tig0001526:2446-2465 None:intergenic 55.0%
GCCATTCCAGTCATGGAGTG+TGG - tig0001526:3385-3404 Msa1337290:intron 55.0%
GCCACACTCCATGACTGGAA+TGG + tig0001526:3389-3408 None:intergenic 55.0%
AGGAAGCCACACTCCATGAC+TGG + tig0001526:3394-3413 None:intergenic 55.0%
CTTGAACCCAGCCCCTCAAT+TGG - tig0001526:3615-3634 Msa1337290:intron 55.0%
GAAAGCTCCAATTGAGGGGC+TGG + tig0001526:3625-3644 None:intergenic 55.0%
CATTATGTGGACCGCCCAGA+TGG - tig0001526:5100-5119 Msa1337290:intron 55.0%
TTGCTGCTGAACTCGCTCAC+AGG - tig0001526:5131-5150 Msa1337290:intron 55.0%
AATTTGGCCTCCACGCTCGT+TGG + tig0001526:5264-5283 None:intergenic 55.0%
!! AGTAGATGAGGTGCCGGAGA+TGG - tig0001526:5839-5858 Msa1337290:intron 55.0%
TCACAGGGCCTTACAGCCAC+AGG - tig0001526:2448-2467 Msa1337290:intron 60.0%
CACAGGGCCTTACAGCCACA+GGG - tig0001526:2449-2468 Msa1337290:intron 60.0%
! CCACGCTCGTTGGCATTGGA+AGG + tig0001526:5254-5273 None:intergenic 60.0%
CCTTCCAATGCCAACGAGCG+TGG - tig0001526:5251-5270 Msa1337290:intron 60.0%
TCCAATGCCAACGAGCGTGG+AGG - tig0001526:5254-5273 Msa1337290:intron 60.0%
GCCTCCACGCTCGTTGGCAT+TGG + tig0001526:5258-5277 None:intergenic 65.0%
TGGCGGCGACGACCAAGTCC+TGG + tig0001526:684-703 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0001526 gene 600 6007 600 ID=Msa1337290;Name=Msa1337290
tig0001526 mRNA 600 6007 600 ID=Msa1337290-mRNA-1;Parent=Msa1337290;Name=Msa1337290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=129|1|1|1|0.83|0.71|7|635|279
tig0001526 exon 600 1544 600 ID=Msa1337290-mRNA-1:exon:1110;Parent=Msa1337290-mRNA-1
tig0001526 exon 2834 3042 2834 ID=Msa1337290-mRNA-1:exon:1109;Parent=Msa1337290-mRNA-1
tig0001526 exon 3690 3782 3690 ID=Msa1337290-mRNA-1:exon:1108;Parent=Msa1337290-mRNA-1
tig0001526 exon 4043 4153 4043 ID=Msa1337290-mRNA-1:exon:1107;Parent=Msa1337290-mRNA-1
tig0001526 exon 5009 5076 5009 ID=Msa1337290-mRNA-1:exon:1106;Parent=Msa1337290-mRNA-1
tig0001526 exon 5672 5739 5672 ID=Msa1337290-mRNA-1:exon:1105;Parent=Msa1337290-mRNA-1
tig0001526 exon 5898 6007 5898 ID=Msa1337290-mRNA-1:exon:1104;Parent=Msa1337290-mRNA-1
tig0001526 five_prime_UTR 5898 6007 5898 ID=Msa1337290-mRNA-1:five_prime_utr;Parent=Msa1337290-mRNA-1
tig0001526 five_prime_UTR 5721 5739 5721 ID=Msa1337290-mRNA-1:five_prime_utr;Parent=Msa1337290-mRNA-1
tig0001526 CDS 5672 5720 5672 ID=Msa1337290-mRNA-1:cds;Parent=Msa1337290-mRNA-1
tig0001526 CDS 5009 5076 5009 ID=Msa1337290-mRNA-1:cds;Parent=Msa1337290-mRNA-1
tig0001526 CDS 4043 4153 4043 ID=Msa1337290-mRNA-1:cds;Parent=Msa1337290-mRNA-1
tig0001526 CDS 3690 3782 3690 ID=Msa1337290-mRNA-1:cds;Parent=Msa1337290-mRNA-1
tig0001526 CDS 2834 3042 2834 ID=Msa1337290-mRNA-1:cds;Parent=Msa1337290-mRNA-1
tig0001526 CDS 1235 1544 1235 ID=Msa1337290-mRNA-1:cds;Parent=Msa1337290-mRNA-1
tig0001526 three_prime_UTR 600 1234 600 ID=Msa1337290-mRNA-1:three_prime_utr;Parent=Msa1337290-mRNA-1
Gene Sequence

>Msa1337290

ATGGCTAACGGTCCAGCACCGTTTTCTGAGATTGGCAAAAGAGCAAGAGACCTCTTGTACAAGGACTATAATTTCGACCACAAGTTTAGCCTGTCGATTCCAAGTTCCACTGGATTGGGCCTTACAGCCACAGGGTTAAAGAGGGATCAATTTTTTGTCGGTGACTTAAACACGCTTTACAAGAGTGGAAATGTTACAGTCGATGTGAAAGTCAATACAGACTCTAATGTATCTACAAAAGTGACTTTGAATGATGTTTCCCTTTCCCATAGTAAAAAAGTAGCGTTGAGCTTCAATATACCCGATCACAAGTCAGGAAAGTTGGATGTGCAGTATCTTCATCCTCATGCAGCTATTGATTCAAGTATTGGCTTGAACCCAGCCCCTCAATTGGAGCTTTCTGCTGCAATTGGAAGCAAAGATATATCTATGGGTGCTGAAGTTGGATTCGATACAACCTCTGCTTCATTCTCAAAATATAATGCCGGGATTGCCTTCAATAAACCAGATTTCTCTGCAACACTTATGCTGGCTGATAAAGGACAGTCTCTGAAGGCATCTTACATTCATTATGTGGACCGCCCAGATGGATTAACAGTTGCTGCTGAACTCGCTCACAGGTTGTCCTCTTCTGAGAACAGATTTACCTTTGGGACCTCACAGTTAATAGATCCAAAAACAGTTTTGAAGACTCGATTCAGCGATGATGGCAAAGCTGCCTTCCAATGCCAACGAGCGTGGAGGCCAAATTCACTCATAACCCTATCTGCCGAGTATGACTCCAAAAAAATCATTGGTTCACCTGCCAAATTTGGTCTCGCTCTCTCTCTCAAGCCTTAA
Protein sequence

>Msa1337290

MANGPAPFSEIGKRARDLLYKDYNFDHKFSLSIPSSTGLGLTATGLKRDQFFVGDLNTLYKSGNVTVDVKVNTDSNVSTKVTLNDVSLSHSKKVALSFNIPDHKSGKLDVQYLHPHAAIDSSIGLNPAPQLELSAAIGSKDISMGAEVGFDTTSASFSKYNAGIAFNKPDFSATLMLADKGQSLKASYIHYVDRPDGLTVAAELAHRLSSSENRFTFGTSQLIDPKTVLKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSKKIIGSPAKFGLALSLKP*