AlfalfaGEDB | Msa1337470

M. sativa cultivar zhongmu-4 / Msa1337470

KEGG: K14504
GO: -
PFAM: PF00722.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337470	AES92351.1	91.837	294	8	1	1	294	1	278	0.0	555

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337470	sp\|Q38857\|XTH22_ARATH	72.242	281	72	3	12	291	6	281	2.22e-157	443

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337470	G7JD13	91.837	294	8	1	1	294	1	278	0.0	555

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0581390	Msa1337470	0.912280	2.332440e-83	-8.615850e-47
Msa1221320	Msa1337470	0.806922	6.499823e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337470	MtrunA17_Chr4g0072611	79.286	280	53	1	12	291	6	280	8.87e-169	469
Msa1337470	MtrunA17_Chr4g0072681	89.431	246	23	1	52	294	1	246	4.87e-166	460
Msa1337470	MtrunA17_Chr7g0258911	78.246	285	54	2	7	291	3	279	9.00e-166	461
Msa1337470	MtrunA17_Chr4g0072671	83.026	271	43	2	25	294	20	288	1.98e-165	460
Msa1337470	MtrunA17_Chr4g0071341	76.384	271	60	1	21	291	15	281	5.36e-155	434
Msa1337470	MtrunA17_Chr4g0072601	70.103	291	79	3	1	291	1	283	1.55e-149	420
Msa1337470	MtrunA17_Chr2g0299061	72.500	280	75	1	12	291	9	286	1.21e-147	416
Msa1337470	MtrunA17_Chr8g0377841	68.151	292	80	2	2	293	5	283	3.47e-146	411
Msa1337470	MtrunA17_Chr3g0122031	68.729	291	77	2	1	291	1	277	1.07e-144	408
Msa1337470	MtrunA17_Chr3g0122021	68.729	291	77	2	1	291	1	277	1.51e-144	407

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337470	AT5G57560.1	72.242	281	72	3	12	291	6	281	2.26e-158	443
Msa1337470	AT4G25810.1	73.214	280	70	2	12	291	9	283	1.11e-156	439
Msa1337470	AT5G57550.1	67.944	287	84	1	7	293	6	284	2.30e-153	430
Msa1337470	AT3G23730.1	66.319	288	94	3	7	294	5	289	2.35e-143	405
Msa1337470	AT4G30270.1	64.931	288	78	2	7	294	4	268	4.99e-143	403
Msa1337470	AT5G48070.1	66.917	266	78	2	28	292	26	282	1.16e-141	400
Msa1337470	AT4G14130.1	64.286	294	98	2	1	294	1	287	1.25e-139	395
Msa1337470	AT5G57530.1	67.658	269	76	2	27	292	23	283	9.19e-135	383
Msa1337470	AT5G57540.1	66.791	268	78	2	28	292	23	282	2.01e-133	380
Msa1337470	AT2G18800.1	60.535	299	107	5	1	291	1	296	3.91e-133	380

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Find 98 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTACATAATCCTCTGG+GGG	0.667478	tig0001526:-119276	None:intergenic
AAACTTGAATATATTCTCAT+TGG	0.404968	tig0001526:-119467	None:intergenic
AAAGGCATTCATTACCATTA+GGG	0.373219	tig0001526:-118759	None:intergenic
AAGTGTGAAAATCAGCTGTT+GGG	0.511857	tig0001526:-119237	None:intergenic
AATGGGGAAATATTACAGAG+GGG	0.760579	tig0001526:-119815	None:intergenic
ACAGTGCCAGCAGAGTTTCC+AGG	0.451981	tig0001526:-118953	None:intergenic
ACATTAGTGTGAAGGATGTA+TGG	0.498460	tig0001526:-119163	None:intergenic
ACCAAGACTTTGATATAACA+TGG	0.553201	tig0001526:+118798	Msa1337470:CDS
ACTTGAAAGTAGTAAGGGTA+AGG	0.418872	tig0001526:-118660	None:intergenic
AGAAACTTACATAATCCTCT+GGG	0.548931	tig0001526:-119278	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAGTGAATGATGAAGAA+GGG	-	tig0001526:118620-118639	None:intergenic	30.0%
TTAGAAGTGAATGATGAAGA+AGG	-	tig0001526:118621-118640	None:intergenic	30.0%
ACCAAGACTTTGATATAACA+TGG	+	tig0001526:118798-118817	Msa1337470:CDS	30.0%
CCAAGACTTTGATATAACAT+GGG	+	tig0001526:118799-118818	Msa1337470:CDS	30.0%
CAAGACTTTGATATAACATG+GGG	+	tig0001526:118800-118819	Msa1337470:CDS	30.0%
AGAGATACTCATTCTTTGAT+TGG	-	tig0001526:118901-118920	None:intergenic	30.0%
TCAAAGAATGAGTATCTCTT+TGG	+	tig0001526:118902-118921	Msa1337470:CDS	30.0%
CAAAGAATGAGTATCTCTTT+GGG	+	tig0001526:118903-118922	Msa1337470:CDS	30.0%
TATCTTCAAAAGGATCAACT+TGG	+	tig0001526:119098-119117	Msa1337470:CDS	30.0%
ATCTTCAAAAGGATCAACTT+GGG	+	tig0001526:119099-119118	Msa1337470:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0001526	gene	118573	119962	118573	ID=Msa1337470;Name=Msa1337470
tig0001526	mRNA	118573	119962	118573	ID=Msa1337470-mRNA-1;Parent=Msa1337470;Name=Msa1337470-mRNA-1;_AED=0.29;_eAED=0.29;_QI=131\|1\|1\|1\|1\|1\|3\|166\|294
tig0001526	exon	118573	118988	118573	ID=Msa1337470-mRNA-1:exon:1155;Parent=Msa1337470-mRNA-1
tig0001526	exon	119097	119290	119097	ID=Msa1337470-mRNA-1:exon:1156;Parent=Msa1337470-mRNA-1
tig0001526	exon	119391	119962	119391	ID=Msa1337470-mRNA-1:exon:1157;Parent=Msa1337470-mRNA-1
tig0001526	five_prime_UTR	118573	118703	118573	ID=Msa1337470-mRNA-1:five_prime_utr;Parent=Msa1337470-mRNA-1
tig0001526	CDS	118704	118988	118704	ID=Msa1337470-mRNA-1:cds;Parent=Msa1337470-mRNA-1
tig0001526	CDS	119097	119290	119097	ID=Msa1337470-mRNA-1:cds;Parent=Msa1337470-mRNA-1
tig0001526	CDS	119391	119796	119391	ID=Msa1337470-mRNA-1:cds;Parent=Msa1337470-mRNA-1
tig0001526	three_prime_UTR	119797	119962	119797	ID=Msa1337470-mRNA-1:three_prime_utr;Parent=Msa1337470-mRNA-1

Gene Sequence

>Msa1337470

ATGGCTTCTTCAAATGATTTCAACATGTTAATTCTAATTCCTCTTCTTGTTAGCTCCCTAATGGTAATGAATGCCTTTGCTGCTGGTAACTTGAACCAAGACTTTGATATAACATGGGGAGATGGCCGGGCAAAGATCCTAAACAATGGTGAGTTACTCACTCTATCACTTGACAAAGCATCTGGTTCAGGATTCCAATCAAAGAATGAGTATCTCTTTGGGAAGATTGATATGCAACTCAAACTTGTCCCTGGAAACTCTGCTGGCACTGTCACTGCATATTACCTATCTTCAAAAGGATCAACTTGGGATGAGATAGACTATGAATTTCTAGGAAATGTAAGTGGTGAACCATACATCCTTCACACTAATGTTTTCAGCCAAGGCAAAGGAAATAGGGAACAACAATTCTATCTATGGTTTGACCCAACAGCTGATTTTCACACTTATTCTATCATATGGAACCCCCAGAGGATTATATTCTCAGTTGATGGCACTCCCATTAGAGAGTTCAAGAACTCAGAGACTATTGGCGTGCCCTTCCCAAAGAGCCAACCAATGAGAATATATTCAAGTTTGTGGAATGCAGATAACTGGGCAACAAGAGGTGGACTAGTCAAGACAGATTGGACAAAGGCTCCATTCACAGCTTCCTACAGAAATTTTAATGCTCAGGCTTGCATCTGGTCTTCTGGAGCATCATCCTGTGGTTCAACTAGTTCTGCATCAAAGGAATCTGCCAGAGGTTCATGGCTTTCACAGGAGTTGGATGCTACTGCTCAAGGGAGGTTGAAATGGGTGCAGAAGAATTACATGATATACAATTACTGCTCAGATACAAAACGATTTCCACAGGGTTTACCTCCAGAGTGTAACCACTCTTAA

Protein sequence

>Msa1337470

MASSNDFNMLILIPLLVSSLMVMNAFAAGNLNQDFDITWGDGRAKILNNGELLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSKGSTWDEIDYEFLGNVSGEPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSIIWNPQRIIFSVDGTPIREFKNSETIGVPFPKSQPMRIYSSLWNADNWATRGGLVKTDWTKAPFTASYRNFNAQACIWSSGASSCGSTSSASKESARGSWLSQELDATAQGRLKWVQKNYMIYNYCSDTKRFPQGLPPECNHS*