Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337470 | AES92351.1 | 91.837 | 294 | 8 | 1 | 1 | 294 | 1 | 278 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337470 | sp|Q38857|XTH22_ARATH | 72.242 | 281 | 72 | 3 | 12 | 291 | 6 | 281 | 2.22e-157 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337470 | G7JD13 | 91.837 | 294 | 8 | 1 | 1 | 294 | 1 | 278 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1221320 | Msa1337470 | 0.806922 | 6.499823e-50 | -8.615850e-47 |
| Msa0581390 | Msa1337470 | 0.912280 | 2.332440e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337470 | MtrunA17_Chr4g0072611 | 79.286 | 280 | 53 | 1 | 12 | 291 | 6 | 280 | 8.87e-169 | 469 |
| Msa1337470 | MtrunA17_Chr4g0072681 | 89.431 | 246 | 23 | 1 | 52 | 294 | 1 | 246 | 4.87e-166 | 460 |
| Msa1337470 | MtrunA17_Chr7g0258911 | 78.246 | 285 | 54 | 2 | 7 | 291 | 3 | 279 | 9.00e-166 | 461 |
| Msa1337470 | MtrunA17_Chr4g0072671 | 83.026 | 271 | 43 | 2 | 25 | 294 | 20 | 288 | 1.98e-165 | 460 |
| Msa1337470 | MtrunA17_Chr4g0071341 | 76.384 | 271 | 60 | 1 | 21 | 291 | 15 | 281 | 5.36e-155 | 434 |
| Msa1337470 | MtrunA17_Chr4g0072601 | 70.103 | 291 | 79 | 3 | 1 | 291 | 1 | 283 | 1.55e-149 | 420 |
| Msa1337470 | MtrunA17_Chr2g0299061 | 72.500 | 280 | 75 | 1 | 12 | 291 | 9 | 286 | 1.21e-147 | 416 |
| Msa1337470 | MtrunA17_Chr8g0377841 | 68.151 | 292 | 80 | 2 | 2 | 293 | 5 | 283 | 3.47e-146 | 411 |
| Msa1337470 | MtrunA17_Chr3g0122031 | 68.729 | 291 | 77 | 2 | 1 | 291 | 1 | 277 | 1.07e-144 | 408 |
| Msa1337470 | MtrunA17_Chr3g0122021 | 68.729 | 291 | 77 | 2 | 1 | 291 | 1 | 277 | 1.51e-144 | 407 |
| Msa1337470 | MtrunA17_Chr8g0389641 | 61.356 | 295 | 63 | 3 | 1 | 294 | 1 | 245 | 8.60e-125 | 356 |
| Msa1337470 | MtrunA17_Chr6g0486581 | 51.748 | 286 | 125 | 4 | 9 | 291 | 8 | 283 | 8.93e-106 | 309 |
| Msa1337470 | MtrunA17_Chr5g0443391 | 50.859 | 291 | 130 | 3 | 1 | 291 | 1 | 278 | 8.75e-103 | 302 |
| Msa1337470 | MtrunA17_Chr3g0096651 | 53.788 | 264 | 114 | 1 | 28 | 291 | 27 | 282 | 1.54e-102 | 301 |
| Msa1337470 | MtrunA17_Chr7g0252631 | 50.168 | 297 | 133 | 4 | 3 | 293 | 2 | 289 | 7.85e-102 | 300 |
| Msa1337470 | MtrunA17_Chr7g0252621 | 55.000 | 260 | 104 | 3 | 38 | 293 | 39 | 289 | 4.21e-101 | 298 |
| Msa1337470 | MtrunA17_Chr7g0252601 | 54.826 | 259 | 106 | 3 | 38 | 293 | 39 | 289 | 7.51e-101 | 297 |
| Msa1337470 | MtrunA17_Chr6g0461731 | 49.495 | 297 | 135 | 4 | 1 | 291 | 23 | 310 | 1.46e-98 | 292 |
| Msa1337470 | MtrunA17_Chr6g0461761 | 49.831 | 295 | 128 | 4 | 8 | 291 | 2 | 287 | 2.11e-98 | 291 |
| Msa1337470 | MtrunA17_Chr4g0054451 | 47.222 | 288 | 143 | 5 | 5 | 291 | 10 | 289 | 5.01e-96 | 285 |
| Msa1337470 | MtrunA17_Chr4g0054431 | 47.059 | 289 | 142 | 5 | 4 | 291 | 9 | 287 | 1.85e-95 | 283 |
| Msa1337470 | MtrunA17_Chr1g0206681 | 46.128 | 297 | 143 | 4 | 5 | 291 | 2 | 291 | 2.57e-95 | 283 |
| Msa1337470 | MtrunA17_Chr2g0323161 | 48.780 | 287 | 139 | 5 | 9 | 291 | 4 | 286 | 3.36e-94 | 280 |
| Msa1337470 | MtrunA17_Chr4g0023961 | 45.675 | 289 | 150 | 3 | 9 | 293 | 5 | 290 | 2.50e-93 | 278 |
| Msa1337470 | MtrunA17_Chr1g0206081 | 43.960 | 298 | 158 | 4 | 2 | 294 | 4 | 297 | 2.70e-88 | 265 |
| Msa1337470 | MtrunA17_Chr8g0390201 | 56.122 | 196 | 85 | 1 | 96 | 291 | 15 | 209 | 2.12e-78 | 237 |
| Msa1337470 | MtrunA17_Chr8g0340001 | 46.087 | 230 | 118 | 3 | 62 | 291 | 8 | 231 | 6.64e-68 | 211 |
| Msa1337470 | MtrunA17_Chr4g0028221 | 39.365 | 315 | 151 | 10 | 3 | 291 | 4 | 304 | 2.81e-64 | 204 |
| Msa1337470 | MtrunA17_Chr2g0327411 | 42.222 | 270 | 135 | 9 | 30 | 291 | 53 | 309 | 1.91e-61 | 197 |
| Msa1337470 | MtrunA17_Chr7g0264731 | 39.273 | 275 | 145 | 7 | 26 | 292 | 32 | 292 | 7.84e-60 | 192 |
| Msa1337470 | MtrunA17_Chr1g0180451 | 40.230 | 261 | 134 | 7 | 39 | 291 | 48 | 294 | 5.40e-59 | 190 |
| Msa1337470 | MtrunA17_Chr4g0072641 | 67.407 | 135 | 25 | 2 | 160 | 294 | 36 | 151 | 9.98e-59 | 184 |
| Msa1337470 | MtrunA17_Chr8g0365231 | 35.379 | 277 | 169 | 6 | 22 | 291 | 37 | 310 | 1.36e-56 | 184 |
| Msa1337470 | MtrunA17_Chr8g0375981 | 35.570 | 298 | 172 | 7 | 1 | 291 | 6 | 290 | 3.32e-56 | 184 |
| Msa1337470 | MtrunA17_Chr2g0303861 | 37.857 | 280 | 147 | 7 | 15 | 278 | 1 | 269 | 4.87e-56 | 182 |
| Msa1337470 | MtrunA17_Chr1g0161951 | 38.372 | 258 | 147 | 5 | 39 | 291 | 41 | 291 | 4.05e-53 | 176 |
| Msa1337470 | MtrunA17_Chr2g0303721 | 36.140 | 285 | 153 | 9 | 10 | 288 | 13 | 274 | 3.70e-52 | 172 |
| Msa1337470 | MtrunA17_Chr5g0410621 | 34.657 | 277 | 154 | 6 | 31 | 292 | 42 | 306 | 3.75e-52 | 174 |
| Msa1337470 | MtrunA17_Chr7g0235541 | 43.379 | 219 | 107 | 7 | 78 | 291 | 1 | 207 | 3.98e-50 | 164 |
| Msa1337470 | MtrunA17_Chr8g0382041 | 33.333 | 264 | 162 | 6 | 35 | 291 | 38 | 294 | 4.04e-45 | 155 |
| Msa1337470 | MtrunA17_Chr4g0072631 | 68.354 | 79 | 23 | 2 | 1 | 78 | 1 | 78 | 1.69e-28 | 105 |
| Msa1337470 | MtrunA17_Chr8g0374231 | 44.444 | 108 | 56 | 2 | 187 | 294 | 1 | 104 | 1.49e-25 | 97.8 |
| Msa1337470 | MtrunA17_Chr8g0390181 | 47.191 | 89 | 44 | 2 | 11 | 98 | 7 | 93 | 7.08e-19 | 80.1 |
| Msa1337470 | MtrunA17_Chr8g0350711 | 31.609 | 174 | 111 | 4 | 53 | 224 | 54 | 221 | 4.30e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337470 | AT5G57560.1 | 72.242 | 281 | 72 | 3 | 12 | 291 | 6 | 281 | 2.26e-158 | 443 |
| Msa1337470 | AT4G25810.1 | 73.214 | 280 | 70 | 2 | 12 | 291 | 9 | 283 | 1.11e-156 | 439 |
| Msa1337470 | AT5G57550.1 | 67.944 | 287 | 84 | 1 | 7 | 293 | 6 | 284 | 2.30e-153 | 430 |
| Msa1337470 | AT3G23730.1 | 66.319 | 288 | 94 | 3 | 7 | 294 | 5 | 289 | 2.35e-143 | 405 |
| Msa1337470 | AT4G30270.1 | 64.931 | 288 | 78 | 2 | 7 | 294 | 4 | 268 | 4.99e-143 | 403 |
| Msa1337470 | AT5G48070.1 | 66.917 | 266 | 78 | 2 | 28 | 292 | 26 | 282 | 1.16e-141 | 400 |
| Msa1337470 | AT4G14130.1 | 64.286 | 294 | 98 | 2 | 1 | 294 | 1 | 287 | 1.25e-139 | 395 |
| Msa1337470 | AT5G57530.1 | 67.658 | 269 | 76 | 2 | 27 | 292 | 23 | 283 | 9.19e-135 | 383 |
| Msa1337470 | AT5G57540.1 | 66.791 | 268 | 78 | 2 | 28 | 292 | 23 | 282 | 2.01e-133 | 380 |
| Msa1337470 | AT2G18800.1 | 60.535 | 299 | 107 | 5 | 1 | 291 | 1 | 296 | 3.91e-133 | 380 |
| Msa1337470 | AT4G30280.1 | 59.727 | 293 | 104 | 3 | 1 | 292 | 3 | 282 | 2.54e-129 | 369 |
| Msa1337470 | AT4G30290.1 | 61.672 | 287 | 96 | 3 | 7 | 292 | 4 | 277 | 3.99e-129 | 369 |
| Msa1337470 | AT4G25820.1 | 65.918 | 267 | 86 | 1 | 25 | 291 | 24 | 285 | 4.02e-127 | 363 |
| Msa1337470 | AT1G65310.2 | 64.528 | 265 | 84 | 2 | 28 | 291 | 48 | 303 | 4.68e-127 | 364 |
| Msa1337470 | AT1G65310.1 | 64.528 | 265 | 84 | 2 | 28 | 291 | 26 | 281 | 7.43e-127 | 363 |
| Msa1337470 | AT5G13870.2 | 56.977 | 258 | 98 | 3 | 38 | 291 | 39 | 287 | 5.21e-101 | 298 |
| Msa1337470 | AT5G13870.1 | 56.977 | 258 | 98 | 3 | 38 | 291 | 39 | 287 | 5.21e-101 | 298 |
| Msa1337470 | AT5G13870.3 | 56.977 | 258 | 98 | 3 | 38 | 291 | 39 | 287 | 5.21e-101 | 298 |
| Msa1337470 | AT4G28850.1 | 47.203 | 286 | 140 | 4 | 12 | 292 | 9 | 288 | 2.81e-97 | 288 |
| Msa1337470 | AT2G06850.1 | 50.515 | 291 | 129 | 4 | 10 | 293 | 10 | 292 | 7.55e-96 | 285 |
| Msa1337470 | AT5G65730.1 | 44.755 | 286 | 151 | 4 | 8 | 292 | 12 | 291 | 9.22e-94 | 279 |
| Msa1337470 | AT4G03210.1 | 46.644 | 298 | 142 | 6 | 1 | 293 | 1 | 286 | 2.70e-92 | 275 |
| Msa1337470 | AT2G14620.1 | 46.290 | 283 | 139 | 3 | 16 | 291 | 18 | 294 | 2.28e-91 | 273 |
| Msa1337470 | AT4G37800.1 | 46.416 | 293 | 148 | 6 | 1 | 292 | 6 | 290 | 1.22e-90 | 271 |
| Msa1337470 | AT1G11545.1 | 46.897 | 290 | 138 | 6 | 15 | 294 | 19 | 302 | 6.49e-90 | 270 |
| Msa1337470 | AT2G06850.2 | 54.661 | 236 | 96 | 3 | 61 | 293 | 5 | 232 | 1.94e-88 | 264 |
| Msa1337470 | AT4G03210.2 | 51.626 | 246 | 103 | 5 | 53 | 293 | 24 | 258 | 9.72e-86 | 258 |
| Msa1337470 | AT4G13090.1 | 48.276 | 290 | 125 | 8 | 16 | 291 | 10 | 288 | 1.13e-82 | 251 |
| Msa1337470 | AT2G14620.2 | 49.145 | 234 | 110 | 2 | 62 | 292 | 18 | 245 | 4.10e-81 | 245 |
| Msa1337470 | AT2G14620.3 | 50.893 | 224 | 101 | 3 | 71 | 291 | 16 | 233 | 2.16e-79 | 241 |
| Msa1337470 | AT4G13080.1 | 45.420 | 262 | 133 | 6 | 31 | 291 | 39 | 291 | 2.28e-76 | 235 |
| Msa1337470 | AT3G25050.1 | 42.912 | 261 | 143 | 4 | 31 | 291 | 35 | 289 | 2.85e-74 | 229 |
| Msa1337470 | AT3G44990.1 | 41.111 | 270 | 135 | 9 | 31 | 291 | 39 | 293 | 2.98e-59 | 191 |
| Msa1337470 | AT2G36870.1 | 41.111 | 270 | 137 | 8 | 30 | 291 | 42 | 297 | 3.32e-59 | 191 |
| Msa1337470 | AT1G10550.1 | 36.398 | 261 | 154 | 6 | 42 | 292 | 52 | 310 | 1.39e-52 | 174 |
| Msa1337470 | AT1G14720.1 | 32.993 | 294 | 178 | 7 | 8 | 291 | 6 | 290 | 3.44e-52 | 174 |
| Msa1337470 | AT1G32170.1 | 33.910 | 289 | 177 | 6 | 13 | 291 | 9 | 293 | 7.12e-52 | 174 |
| Msa1337470 | AT2G01850.1 | 32.302 | 291 | 182 | 7 | 9 | 291 | 7 | 290 | 1.23e-49 | 167 |
| Msa1337470 | AT4G18990.1 | 34.164 | 281 | 153 | 8 | 37 | 291 | 38 | 312 | 5.79e-46 | 159 |
| Msa1337470 | AT3G48580.1 | 34.510 | 255 | 144 | 8 | 38 | 291 | 41 | 273 | 3.09e-43 | 149 |
| Msa1337470 | AT4G18990.2 | 35.047 | 214 | 116 | 6 | 96 | 291 | 30 | 238 | 3.68e-38 | 136 |
| Msa1337470 | AT3G48580.3 | 33.190 | 232 | 133 | 7 | 61 | 291 | 4 | 214 | 1.54e-37 | 133 |
| Msa1337470 | AT2G36870.2 | 42.446 | 139 | 70 | 3 | 30 | 160 | 42 | 178 | 4.26e-29 | 109 |
| Msa1337470 | AT3G48580.2 | 30.196 | 255 | 135 | 9 | 38 | 291 | 41 | 253 | 7.82e-27 | 105 |
Find 98 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATTGGTTGGCTCTT+TGG | 0.217423 | tig0001526:-119455 | None:intergenic |
| CCCCATTATCAGTACAATTC+TGG | 0.223637 | tig0001526:+119831 | Msa1337470:three_prime_UTR |
| CAGGCTTGCATCTGGTCTTC+TGG | 0.231062 | tig0001526:+119584 | Msa1337470:CDS |
| TTCTCATTGGTTGGCTCTTT+GGG | 0.238486 | tig0001526:-119454 | None:intergenic |
| TCAGCCAAGGCAAAGGAAAT+AGG | 0.272614 | tig0001526:+119188 | Msa1337470:CDS |
| TCAAAGAATGAGTATCTCTT+TGG | 0.281236 | tig0001526:+118902 | Msa1337470:CDS |
| TGCCAGAATTGTACTGATAA+TGG | 0.282977 | tig0001526:-119833 | None:intergenic |
| GGGAACAACAATTCTATCTA+TGG | 0.295441 | tig0001526:+119209 | Msa1337470:CDS |
| TTGTTCAGATTCTCAGTTGA+TGG | 0.305775 | tig0001526:+119383 | Msa1337470:intron |
| TTCACACTTATTCTATCATA+TGG | 0.312027 | tig0001526:+119251 | Msa1337470:CDS |
| CAAAGGCATTCATTACCATT+AGG | 0.322287 | tig0001526:-118760 | None:intergenic |
| AGAGATACTCATTCTTTGAT+TGG | 0.324085 | tig0001526:-118898 | None:intergenic |
| GTTTGTGGAATGCAGATAAC+TGG | 0.328198 | tig0001526:+119486 | Msa1337470:CDS |
| TGAGTTCTTGAACTCTCTAA+TGG | 0.332319 | tig0001526:-119411 | None:intergenic |
| GCCAGAATTGTACTGATAAT+GGG | 0.334964 | tig0001526:-119832 | None:intergenic |
| CTGCTCAAGGGAGGTTGAAA+TGG | 0.336064 | tig0001526:+119687 | Msa1337470:CDS |
| GAGATAGACTATGAATTTCT+AGG | 0.342269 | tig0001526:+119124 | Msa1337470:CDS |
| CTTGACAAAGCATCTGGTTC+AGG | 0.349485 | tig0001526:+118872 | Msa1337470:CDS |
| TGAGAATATATTCAAGTTTG+TGG | 0.357681 | tig0001526:+119471 | Msa1337470:CDS |
| TCTTCTTGTTAGCTCCCTAA+TGG | 0.360536 | tig0001526:+118745 | Msa1337470:CDS |
| AAAGGCATTCATTACCATTA+GGG | 0.373219 | tig0001526:-118759 | None:intergenic |
| CAGCCAAGGCAAAGGAAATA+GGG | 0.382115 | tig0001526:+119189 | Msa1337470:CDS |
| CATTGGTTGGCTCTTTGGGA+AGG | 0.395358 | tig0001526:-119450 | None:intergenic |
| TGAGTAACTCACCATTGTTT+AGG | 0.399360 | tig0001526:-118841 | None:intergenic |
| TTAGAAACTTGAAAGTAGTA+AGG | 0.403765 | tig0001526:-118666 | None:intergenic |
| AAACTTGAATATATTCTCAT+TGG | 0.404968 | tig0001526:-119467 | None:intergenic |
| GTTCCCTATTTCCTTTGCCT+TGG | 0.412829 | tig0001526:-119192 | None:intergenic |
| ACTTGAAAGTAGTAAGGGTA+AGG | 0.418872 | tig0001526:-118660 | None:intergenic |
| CAAAGAATGAGTATCTCTTT+GGG | 0.422787 | tig0001526:+118903 | Msa1337470:CDS |
| TTCATGGCTTTCACAGGAGT+TGG | 0.429392 | tig0001526:+119658 | Msa1337470:CDS |
| CTGTGAAAGCCATGAACCTC+TGG | 0.431495 | tig0001526:-119651 | None:intergenic |
| AGGAATCTGCCAGAGGTTCA+TGG | 0.447966 | tig0001526:+119642 | Msa1337470:CDS |
| TTAATGCTCAGGCTTGCATC+TGG | 0.449779 | tig0001526:+119576 | Msa1337470:CDS |
| ACAGTGCCAGCAGAGTTTCC+AGG | 0.451981 | tig0001526:-118953 | None:intergenic |
| ATTGGTTGGCTCTTTGGGAA+GGG | 0.452250 | tig0001526:-119449 | None:intergenic |
| GAGAAACTTACATAATCCTC+TGG | 0.455201 | tig0001526:-119279 | None:intergenic |
| GATGTTGCACATTTGATGAA+TGG | 0.471127 | tig0001526:-119924 | None:intergenic |
| GAGTTCTTGAACTCTCTAAT+GGG | 0.471628 | tig0001526:-119410 | None:intergenic |
| CTAACACTTCATTGTAGAGA+TGG | 0.471692 | tig0001526:+118685 | Msa1337470:exon |
| TTGAATATATTCTCATTGGT+TGG | 0.473138 | tig0001526:-119463 | None:intergenic |
| CTATCACTTGACAAAGCATC+TGG | 0.476052 | tig0001526:+118866 | Msa1337470:CDS |
| TGCTCAAGGGAGGTTGAAAT+GGG | 0.478303 | tig0001526:+119688 | Msa1337470:CDS |
| TGTTTGCAGCTATCTTCAAA+AGG | 0.478382 | tig0001526:+119088 | Msa1337470:intron |
| CAGAGGTTCATGGCTTTCAC+AGG | 0.492586 | tig0001526:+119652 | Msa1337470:CDS |
| ATATAACATGGGGAGATGGC+CGG | 0.493673 | tig0001526:+118810 | Msa1337470:CDS |
| ACATTAGTGTGAAGGATGTA+TGG | 0.498460 | tig0001526:-119163 | None:intergenic |
| TATAACATGGGGAGATGGCC+GGG | 0.500319 | tig0001526:+118811 | Msa1337470:CDS |
| CTTGTCCCTGGAAACTCTGC+TGG | 0.507742 | tig0001526:+118947 | Msa1337470:CDS |
| CCCATGTTATATCAAAGTCT+TGG | 0.508712 | tig0001526:-118799 | None:intergenic |
| AAGTGTGAAAATCAGCTGTT+GGG | 0.511857 | tig0001526:-119237 | None:intergenic |
| GAGTTGGATGCTACTGCTCA+AGG | 0.512916 | tig0001526:+119674 | Msa1337470:CDS |
| TTAGAAGTGAATGATGAAGA+AGG | 0.513110 | tig0001526:-118618 | None:intergenic |
| TTCAAGAACTCAGAGACTAT+TGG | 0.514298 | tig0001526:+119422 | Msa1337470:CDS |
| TAGAAGTGAATGATGAAGAA+GGG | 0.516867 | tig0001526:-118617 | None:intergenic |
| TTTCTGTAGGAAGCTGTGAA+TGG | 0.517237 | tig0001526:-119551 | None:intergenic |
| TTCAACTAGTTCTGCATCAA+AGG | 0.523451 | tig0001526:+119622 | Msa1337470:CDS |
| TAAGTGTGAAAATCAGCTGT+TGG | 0.524540 | tig0001526:-119238 | None:intergenic |
| GTGGACTAGTCAAGACAGAT+TGG | 0.526498 | tig0001526:+119519 | Msa1337470:CDS |
| ATGCAACTCAAACTTGTCCC+TGG | 0.528344 | tig0001526:+118935 | Msa1337470:CDS |
| CTGAGCATTAAAATTTCTGT+AGG | 0.531432 | tig0001526:-119564 | None:intergenic |
| TATCTTCAAAAGGATCAACT+TGG | 0.532938 | tig0001526:+119098 | Msa1337470:CDS |
| GTAATGAATGCCTTTGCTGC+TGG | 0.536304 | tig0001526:+118767 | Msa1337470:CDS |
| AGATACAAAACGATTTCCAC+AGG | 0.547822 | tig0001526:+119745 | Msa1337470:CDS |
| GTTCAAGTTACCAGCAGCAA+AGG | 0.548175 | tig0001526:-118777 | None:intergenic |
| AGAAACTTACATAATCCTCT+GGG | 0.548931 | tig0001526:-119278 | None:intergenic |
| ACCAAGACTTTGATATAACA+TGG | 0.553201 | tig0001526:+118798 | Msa1337470:CDS |
| TTTGATATAACATGGGGAGA+TGG | 0.565301 | tig0001526:+118806 | Msa1337470:CDS |
| CTTGAAAGTAGTAAGGGTAA+GGG | 0.581646 | tig0001526:-118659 | None:intergenic |
| TAGAAACTTGAAAGTAGTAA+GGG | 0.581890 | tig0001526:-118665 | None:intergenic |
| CATTGTTTAGGATCTTTGCC+CGG | 0.582367 | tig0001526:-118829 | None:intergenic |
| CAGTGCCAGCAGAGTTTCCA+GGG | 0.583065 | tig0001526:-118952 | None:intergenic |
| TGCAGAACTAGTTGAACCAC+AGG | 0.589225 | tig0001526:-119615 | None:intergenic |
| ATCTTCAAAAGGATCAACTT+GGG | 0.591775 | tig0001526:+119099 | Msa1337470:CDS |
| ATTAGGGAGCTAACAAGAAG+AGG | 0.592984 | tig0001526:-118743 | None:intergenic |
| GATAACTGGGCAACAAGAGG+TGG | 0.595641 | tig0001526:+119500 | Msa1337470:CDS |
| CCAGAATTGTACTGATAATG+GGG | 0.599960 | tig0001526:-119831 | None:intergenic |
| GAATGATGAAGAAGGGTGAA+TGG | 0.605212 | tig0001526:-118610 | None:intergenic |
| TAAGAGTGGTTACACTCTGG+AGG | 0.605262 | tig0001526:-119773 | None:intergenic |
| CCAAGACTTTGATATAACAT+GGG | 0.610001 | tig0001526:+118799 | Msa1337470:CDS |
| AGTTGGATGCTACTGCTCAA+GGG | 0.614134 | tig0001526:+119675 | Msa1337470:CDS |
| TAATGGGGAAATATTACAGA+GGG | 0.617567 | tig0001526:-119816 | None:intergenic |
| GGCTGAAAACATTAGTGTGA+AGG | 0.617871 | tig0001526:-119171 | None:intergenic |
| TTTGTGGAATGCAGATAACT+GGG | 0.620067 | tig0001526:+119487 | Msa1337470:CDS |
| GCAGATAACTGGGCAACAAG+AGG | 0.630081 | tig0001526:+119497 | Msa1337470:CDS |
| TCTTCTGGAGCATCATCCTG+TGG | 0.630255 | tig0001526:+119599 | Msa1337470:CDS |
| GAATTTCTAGGAAATGTAAG+TGG | 0.651069 | tig0001526:+119136 | Msa1337470:CDS |
| TGATGAAGAAGGGTGAATGG+TGG | 0.665433 | tig0001526:-118607 | None:intergenic |
| CGGGCAAAGATCCTAAACAA+TGG | 0.666101 | tig0001526:+118830 | Msa1337470:CDS |
| AAACTTACATAATCCTCTGG+GGG | 0.667478 | tig0001526:-119276 | None:intergenic |
| GATACAAAACGATTTCCACA+GGG | 0.673697 | tig0001526:+119746 | Msa1337470:CDS |
| CAAGACTTTGATATAACATG+GGG | 0.676264 | tig0001526:+118800 | Msa1337470:CDS |
| CACTCTGGAGGTAAACCCTG+TGG | 0.676304 | tig0001526:-119761 | None:intergenic |
| TGGATGCTACTGCTCAAGGG+AGG | 0.684916 | tig0001526:+119678 | Msa1337470:CDS |
| ATAATGGGGAAATATTACAG+AGG | 0.692034 | tig0001526:-119817 | None:intergenic |
| GAAACTTACATAATCCTCTG+GGG | 0.703471 | tig0001526:-119277 | None:intergenic |
| GCATCAAAGGAATCTGCCAG+AGG | 0.704273 | tig0001526:+119635 | Msa1337470:CDS |
| AGTCAAGACAGATTGGACAA+AGG | 0.729558 | tig0001526:+119526 | Msa1337470:CDS |
| AATGGGGAAATATTACAGAG+GGG | 0.760579 | tig0001526:-119815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTGTGTTAACTTATTAA+AGG | + | tig0001526:119003-119022 | Msa1337470:intron | 20.0% |
| !! | AAACTTGAATATATTCTCAT+TGG | - | tig0001526:119470-119489 | None:intergenic | 20.0% |
| !! | GAATGTGATGATAATATTTA+TGG | - | tig0001526:118575-118594 | None:intergenic | 20.0% |
| !! | AGTTTGTGTTAACTTATTAA+AGG | + | tig0001526:119003-119022 | Msa1337470:intron | 20.0% |
| !! | AAACTTGAATATATTCTCAT+TGG | - | tig0001526:119470-119489 | None:intergenic | 20.0% |
| ! | TAGAAACTTGAAAGTAGTAA+GGG | - | tig0001526:118668-118687 | None:intergenic | 25.0% |
| ! | TTAGAAACTTGAAAGTAGTA+AGG | - | tig0001526:118669-118688 | None:intergenic | 25.0% |
| ! | TTCACACTTATTCTATCATA+TGG | + | tig0001526:119251-119270 | Msa1337470:CDS | 25.0% |
| !! | GGTATTTAAGATGTAGAATA+AGG | - | tig0001526:119324-119343 | None:intergenic | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | - | tig0001526:119466-119485 | None:intergenic | 25.0% |
| !! | TGAGAATATATTCAAGTTTG+TGG | + | tig0001526:119471-119490 | Msa1337470:CDS | 25.0% |
| !!! | TAGTTTTCTCTTTTTAAGAG+TGG | - | tig0001526:119790-119809 | None:intergenic | 25.0% |
| ! | TAGAAACTTGAAAGTAGTAA+GGG | - | tig0001526:118668-118687 | None:intergenic | 25.0% |
| ! | TTAGAAACTTGAAAGTAGTA+AGG | - | tig0001526:118669-118688 | None:intergenic | 25.0% |
| ! | TTCACACTTATTCTATCATA+TGG | + | tig0001526:119251-119270 | Msa1337470:CDS | 25.0% |
| !! | GGTATTTAAGATGTAGAATA+AGG | - | tig0001526:119324-119343 | None:intergenic | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | - | tig0001526:119466-119485 | None:intergenic | 25.0% |
| !! | TGAGAATATATTCAAGTTTG+TGG | + | tig0001526:119471-119490 | Msa1337470:CDS | 25.0% |
| !!! | TAGTTTTCTCTTTTTAAGAG+TGG | - | tig0001526:119790-119809 | None:intergenic | 25.0% |
| TAGAAGTGAATGATGAAGAA+GGG | - | tig0001526:118620-118639 | None:intergenic | 30.0% | |
| TTAGAAGTGAATGATGAAGA+AGG | - | tig0001526:118621-118640 | None:intergenic | 30.0% | |
| !! | AAAGGCATTCATTACCATTA+GGG | - | tig0001526:118762-118781 | None:intergenic | 30.0% |
| ACCAAGACTTTGATATAACA+TGG | + | tig0001526:118798-118817 | Msa1337470:CDS | 30.0% | |
| CCAAGACTTTGATATAACAT+GGG | + | tig0001526:118799-118818 | Msa1337470:CDS | 30.0% | |
| CAAGACTTTGATATAACATG+GGG | + | tig0001526:118800-118819 | Msa1337470:CDS | 30.0% | |
| AGAGATACTCATTCTTTGAT+TGG | - | tig0001526:118901-118920 | None:intergenic | 30.0% | |
| TCAAAGAATGAGTATCTCTT+TGG | + | tig0001526:118902-118921 | Msa1337470:CDS | 30.0% | |
| CAAAGAATGAGTATCTCTTT+GGG | + | tig0001526:118903-118922 | Msa1337470:CDS | 30.0% | |
| TATCTTCAAAAGGATCAACT+TGG | + | tig0001526:119098-119117 | Msa1337470:CDS | 30.0% | |
| ATCTTCAAAAGGATCAACTT+GGG | + | tig0001526:119099-119118 | Msa1337470:CDS | 30.0% | |
| GAGATAGACTATGAATTTCT+AGG | + | tig0001526:119124-119143 | Msa1337470:CDS | 30.0% | |
| ! | GAATTTCTAGGAAATGTAAG+TGG | + | tig0001526:119136-119155 | Msa1337470:CDS | 30.0% |
| AGAAACTTACATAATCCTCT+GGG | - | tig0001526:119281-119300 | None:intergenic | 30.0% | |
| AGATGTAGAATAAGGAAACA+CGG | - | tig0001526:119316-119335 | None:intergenic | 30.0% | |
| TATAAGTCTATATGCATGCA+GGG | - | tig0001526:119345-119364 | None:intergenic | 30.0% | |
| ATATAAGTCTATATGCATGC+AGG | - | tig0001526:119346-119365 | None:intergenic | 30.0% | |
| CTGAGCATTAAAATTTCTGT+AGG | - | tig0001526:119567-119586 | None:intergenic | 30.0% | |
| !! | CTACAGAAATTTTAATGCTC+AGG | + | tig0001526:119565-119584 | Msa1337470:CDS | 30.0% |
| TAATGGGGAAATATTACAGA+GGG | - | tig0001526:119819-119838 | None:intergenic | 30.0% | |
| ! | ATAATGGGGAAATATTACAG+AGG | - | tig0001526:119820-119839 | None:intergenic | 30.0% |
| TAGAAGTGAATGATGAAGAA+GGG | - | tig0001526:118620-118639 | None:intergenic | 30.0% | |
| TTAGAAGTGAATGATGAAGA+AGG | - | tig0001526:118621-118640 | None:intergenic | 30.0% | |
| !! | AAAGGCATTCATTACCATTA+GGG | - | tig0001526:118762-118781 | None:intergenic | 30.0% |
| ACCAAGACTTTGATATAACA+TGG | + | tig0001526:118798-118817 | Msa1337470:CDS | 30.0% | |
| CCAAGACTTTGATATAACAT+GGG | + | tig0001526:118799-118818 | Msa1337470:CDS | 30.0% | |
| CAAGACTTTGATATAACATG+GGG | + | tig0001526:118800-118819 | Msa1337470:CDS | 30.0% | |
| AGAGATACTCATTCTTTGAT+TGG | - | tig0001526:118901-118920 | None:intergenic | 30.0% | |
| TCAAAGAATGAGTATCTCTT+TGG | + | tig0001526:118902-118921 | Msa1337470:CDS | 30.0% | |
| CAAAGAATGAGTATCTCTTT+GGG | + | tig0001526:118903-118922 | Msa1337470:CDS | 30.0% | |
| TATCTTCAAAAGGATCAACT+TGG | + | tig0001526:119098-119117 | Msa1337470:CDS | 30.0% | |
| ATCTTCAAAAGGATCAACTT+GGG | + | tig0001526:119099-119118 | Msa1337470:CDS | 30.0% | |
| GAGATAGACTATGAATTTCT+AGG | + | tig0001526:119124-119143 | Msa1337470:CDS | 30.0% | |
| ! | GAATTTCTAGGAAATGTAAG+TGG | + | tig0001526:119136-119155 | Msa1337470:CDS | 30.0% |
| AGAAACTTACATAATCCTCT+GGG | - | tig0001526:119281-119300 | None:intergenic | 30.0% | |
| AGATGTAGAATAAGGAAACA+CGG | - | tig0001526:119316-119335 | None:intergenic | 30.0% | |
| TATAAGTCTATATGCATGCA+GGG | - | tig0001526:119345-119364 | None:intergenic | 30.0% | |
| ATATAAGTCTATATGCATGC+AGG | - | tig0001526:119346-119365 | None:intergenic | 30.0% | |
| CTGAGCATTAAAATTTCTGT+AGG | - | tig0001526:119567-119586 | None:intergenic | 30.0% | |
| !! | CTACAGAAATTTTAATGCTC+AGG | + | tig0001526:119565-119584 | Msa1337470:CDS | 30.0% |
| TAATGGGGAAATATTACAGA+GGG | - | tig0001526:119819-119838 | None:intergenic | 30.0% | |
| ! | ATAATGGGGAAATATTACAG+AGG | - | tig0001526:119820-119839 | None:intergenic | 30.0% |
| CTTGAAAGTAGTAAGGGTAA+GGG | - | tig0001526:118662-118681 | None:intergenic | 35.0% | |
| ACTTGAAAGTAGTAAGGGTA+AGG | - | tig0001526:118663-118682 | None:intergenic | 35.0% | |
| CTAACACTTCATTGTAGAGA+TGG | + | tig0001526:118685-118704 | Msa1337470:exon | 35.0% | |
| !! | CAAAGGCATTCATTACCATT+AGG | - | tig0001526:118763-118782 | None:intergenic | 35.0% |
| CCCATGTTATATCAAAGTCT+TGG | - | tig0001526:118802-118821 | None:intergenic | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | tig0001526:118806-118825 | Msa1337470:CDS | 35.0% | |
| TGAGTAACTCACCATTGTTT+AGG | - | tig0001526:118844-118863 | None:intergenic | 35.0% | |
| GTATGCAATCAATGTAAAGC+AGG | - | tig0001526:119039-119058 | None:intergenic | 35.0% | |
| TGTTTGCAGCTATCTTCAAA+AGG | + | tig0001526:119088-119107 | Msa1337470:intron | 35.0% | |
| ACATTAGTGTGAAGGATGTA+TGG | - | tig0001526:119166-119185 | None:intergenic | 35.0% | |
| GGGAACAACAATTCTATCTA+TGG | + | tig0001526:119209-119228 | Msa1337470:CDS | 35.0% | |
| AAGTGTGAAAATCAGCTGTT+GGG | - | tig0001526:119240-119259 | None:intergenic | 35.0% | |
| TAAGTGTGAAAATCAGCTGT+TGG | - | tig0001526:119241-119260 | None:intergenic | 35.0% | |
| AAACTTACATAATCCTCTGG+GGG | - | tig0001526:119279-119298 | None:intergenic | 35.0% | |
| GAAACTTACATAATCCTCTG+GGG | - | tig0001526:119280-119299 | None:intergenic | 35.0% | |
| GAGAAACTTACATAATCCTC+TGG | - | tig0001526:119282-119301 | None:intergenic | 35.0% | |
| ATGTAGAATAAGGAAACACG+GGG | - | tig0001526:119314-119333 | None:intergenic | 35.0% | |
| GATGTAGAATAAGGAAACAC+GGG | - | tig0001526:119315-119334 | None:intergenic | 35.0% | |
| TTGTTCAGATTCTCAGTTGA+TGG | + | tig0001526:119383-119402 | Msa1337470:intron | 35.0% | |
| GAGTTCTTGAACTCTCTAAT+GGG | - | tig0001526:119413-119432 | None:intergenic | 35.0% | |
| TGAGTTCTTGAACTCTCTAA+TGG | - | tig0001526:119414-119433 | None:intergenic | 35.0% | |
| TTCAAGAACTCAGAGACTAT+TGG | + | tig0001526:119422-119441 | Msa1337470:CDS | 35.0% | |
| TTTGTGGAATGCAGATAACT+GGG | + | tig0001526:119487-119506 | Msa1337470:CDS | 35.0% | |
| !! | TTCAACTAGTTCTGCATCAA+AGG | + | tig0001526:119622-119641 | Msa1337470:CDS | 35.0% |
| AGATACAAAACGATTTCCAC+AGG | + | tig0001526:119745-119764 | Msa1337470:CDS | 35.0% | |
| GATACAAAACGATTTCCACA+GGG | + | tig0001526:119746-119765 | Msa1337470:CDS | 35.0% | |
| !! | TTTTAAGAGTGGTTACACTC+TGG | - | tig0001526:119779-119798 | None:intergenic | 35.0% |
| AATGGGGAAATATTACAGAG+GGG | - | tig0001526:119818-119837 | None:intergenic | 35.0% | |
| ! | CCAGAATTGTACTGATAATG+GGG | - | tig0001526:119834-119853 | None:intergenic | 35.0% |
| ! | GCCAGAATTGTACTGATAAT+GGG | - | tig0001526:119835-119854 | None:intergenic | 35.0% |
| ! | TGCCAGAATTGTACTGATAA+TGG | - | tig0001526:119836-119855 | None:intergenic | 35.0% |
| ! | TTTTGATCTCTGTCATCACT+AGG | + | tig0001526:119889-119908 | Msa1337470:three_prime_UTR | 35.0% |
| GATGTTGCACATTTGATGAA+TGG | - | tig0001526:119927-119946 | None:intergenic | 35.0% | |
| CTTGAAAGTAGTAAGGGTAA+GGG | - | tig0001526:118662-118681 | None:intergenic | 35.0% | |
| ACTTGAAAGTAGTAAGGGTA+AGG | - | tig0001526:118663-118682 | None:intergenic | 35.0% | |
| CTAACACTTCATTGTAGAGA+TGG | + | tig0001526:118685-118704 | Msa1337470:exon | 35.0% | |
| !! | CAAAGGCATTCATTACCATT+AGG | - | tig0001526:118763-118782 | None:intergenic | 35.0% |
| CCCATGTTATATCAAAGTCT+TGG | - | tig0001526:118802-118821 | None:intergenic | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | tig0001526:118806-118825 | Msa1337470:CDS | 35.0% | |
| TGAGTAACTCACCATTGTTT+AGG | - | tig0001526:118844-118863 | None:intergenic | 35.0% | |
| GTATGCAATCAATGTAAAGC+AGG | - | tig0001526:119039-119058 | None:intergenic | 35.0% | |
| TGTTTGCAGCTATCTTCAAA+AGG | + | tig0001526:119088-119107 | Msa1337470:intron | 35.0% | |
| ACATTAGTGTGAAGGATGTA+TGG | - | tig0001526:119166-119185 | None:intergenic | 35.0% | |
| GGGAACAACAATTCTATCTA+TGG | + | tig0001526:119209-119228 | Msa1337470:CDS | 35.0% | |
| AAGTGTGAAAATCAGCTGTT+GGG | - | tig0001526:119240-119259 | None:intergenic | 35.0% | |
| TAAGTGTGAAAATCAGCTGT+TGG | - | tig0001526:119241-119260 | None:intergenic | 35.0% | |
| AAACTTACATAATCCTCTGG+GGG | - | tig0001526:119279-119298 | None:intergenic | 35.0% | |
| GAAACTTACATAATCCTCTG+GGG | - | tig0001526:119280-119299 | None:intergenic | 35.0% | |
| GAGAAACTTACATAATCCTC+TGG | - | tig0001526:119282-119301 | None:intergenic | 35.0% | |
| ATGTAGAATAAGGAAACACG+GGG | - | tig0001526:119314-119333 | None:intergenic | 35.0% | |
| GATGTAGAATAAGGAAACAC+GGG | - | tig0001526:119315-119334 | None:intergenic | 35.0% | |
| TTGTTCAGATTCTCAGTTGA+TGG | + | tig0001526:119383-119402 | Msa1337470:intron | 35.0% | |
| GAGTTCTTGAACTCTCTAAT+GGG | - | tig0001526:119413-119432 | None:intergenic | 35.0% | |
| TGAGTTCTTGAACTCTCTAA+TGG | - | tig0001526:119414-119433 | None:intergenic | 35.0% | |
| TTCAAGAACTCAGAGACTAT+TGG | + | tig0001526:119422-119441 | Msa1337470:CDS | 35.0% | |
| TTTGTGGAATGCAGATAACT+GGG | + | tig0001526:119487-119506 | Msa1337470:CDS | 35.0% | |
| !! | TTCAACTAGTTCTGCATCAA+AGG | + | tig0001526:119622-119641 | Msa1337470:CDS | 35.0% |
| AGATACAAAACGATTTCCAC+AGG | + | tig0001526:119745-119764 | Msa1337470:CDS | 35.0% | |
| GATACAAAACGATTTCCACA+GGG | + | tig0001526:119746-119765 | Msa1337470:CDS | 35.0% | |
| !! | TTTTAAGAGTGGTTACACTC+TGG | - | tig0001526:119779-119798 | None:intergenic | 35.0% |
| AATGGGGAAATATTACAGAG+GGG | - | tig0001526:119818-119837 | None:intergenic | 35.0% | |
| ! | CCAGAATTGTACTGATAATG+GGG | - | tig0001526:119834-119853 | None:intergenic | 35.0% |
| ! | GCCAGAATTGTACTGATAAT+GGG | - | tig0001526:119835-119854 | None:intergenic | 35.0% |
| ! | TGCCAGAATTGTACTGATAA+TGG | - | tig0001526:119836-119855 | None:intergenic | 35.0% |
| ! | TTTTGATCTCTGTCATCACT+AGG | + | tig0001526:119889-119908 | Msa1337470:three_prime_UTR | 35.0% |
| GATGTTGCACATTTGATGAA+TGG | - | tig0001526:119927-119946 | None:intergenic | 35.0% | |
| GAATGATGAAGAAGGGTGAA+TGG | - | tig0001526:118613-118632 | None:intergenic | 40.0% | |
| ATTAGGGAGCTAACAAGAAG+AGG | - | tig0001526:118746-118765 | None:intergenic | 40.0% | |
| TCTTCTTGTTAGCTCCCTAA+TGG | + | tig0001526:118745-118764 | Msa1337470:CDS | 40.0% | |
| ! | CATTGTTTAGGATCTTTGCC+CGG | - | tig0001526:118832-118851 | None:intergenic | 40.0% |
| ! | CTATCACTTGACAAAGCATC+TGG | + | tig0001526:118866-118885 | Msa1337470:CDS | 40.0% |
| GGCTGAAAACATTAGTGTGA+AGG | - | tig0001526:119174-119193 | None:intergenic | 40.0% | |
| ! | CACACTAATGTTTTCAGCCA+AGG | + | tig0001526:119175-119194 | Msa1337470:CDS | 40.0% |
| ! | AATGTTTTCAGCCAAGGCAA+AGG | + | tig0001526:119181-119200 | Msa1337470:CDS | 40.0% |
| ! | TTCTCATTGGTTGGCTCTTT+GGG | - | tig0001526:119457-119476 | None:intergenic | 40.0% |
| ! | ATTCTCATTGGTTGGCTCTT+TGG | - | tig0001526:119458-119477 | None:intergenic | 40.0% |
| GTTTGTGGAATGCAGATAAC+TGG | + | tig0001526:119486-119505 | Msa1337470:CDS | 40.0% | |
| AGTCAAGACAGATTGGACAA+AGG | + | tig0001526:119526-119545 | Msa1337470:CDS | 40.0% | |
| TTTCTGTAGGAAGCTGTGAA+TGG | - | tig0001526:119554-119573 | None:intergenic | 40.0% | |
| CCCCATTATCAGTACAATTC+TGG | + | tig0001526:119831-119850 | Msa1337470:three_prime_UTR | 40.0% | |
| GAATGATGAAGAAGGGTGAA+TGG | - | tig0001526:118613-118632 | None:intergenic | 40.0% | |
| ATTAGGGAGCTAACAAGAAG+AGG | - | tig0001526:118746-118765 | None:intergenic | 40.0% | |
| TCTTCTTGTTAGCTCCCTAA+TGG | + | tig0001526:118745-118764 | Msa1337470:CDS | 40.0% | |
| ! | CATTGTTTAGGATCTTTGCC+CGG | - | tig0001526:118832-118851 | None:intergenic | 40.0% |
| ! | CTATCACTTGACAAAGCATC+TGG | + | tig0001526:118866-118885 | Msa1337470:CDS | 40.0% |
| GGCTGAAAACATTAGTGTGA+AGG | - | tig0001526:119174-119193 | None:intergenic | 40.0% | |
| ! | CACACTAATGTTTTCAGCCA+AGG | + | tig0001526:119175-119194 | Msa1337470:CDS | 40.0% |
| ! | AATGTTTTCAGCCAAGGCAA+AGG | + | tig0001526:119181-119200 | Msa1337470:CDS | 40.0% |
| ! | TTCTCATTGGTTGGCTCTTT+GGG | - | tig0001526:119457-119476 | None:intergenic | 40.0% |
| ! | ATTCTCATTGGTTGGCTCTT+TGG | - | tig0001526:119458-119477 | None:intergenic | 40.0% |
| GTTTGTGGAATGCAGATAAC+TGG | + | tig0001526:119486-119505 | Msa1337470:CDS | 40.0% | |
| AGTCAAGACAGATTGGACAA+AGG | + | tig0001526:119526-119545 | Msa1337470:CDS | 40.0% | |
| TTTCTGTAGGAAGCTGTGAA+TGG | - | tig0001526:119554-119573 | None:intergenic | 40.0% | |
| CCCCATTATCAGTACAATTC+TGG | + | tig0001526:119831-119850 | Msa1337470:three_prime_UTR | 40.0% | |
| TGATGAAGAAGGGTGAATGG+TGG | - | tig0001526:118610-118629 | None:intergenic | 45.0% | |
| GTAATGAATGCCTTTGCTGC+TGG | + | tig0001526:118767-118786 | Msa1337470:CDS | 45.0% | |
| ! | GTTCAAGTTACCAGCAGCAA+AGG | - | tig0001526:118780-118799 | None:intergenic | 45.0% |
| ATATAACATGGGGAGATGGC+CGG | + | tig0001526:118810-118829 | Msa1337470:CDS | 45.0% | |
| CGGGCAAAGATCCTAAACAA+TGG | + | tig0001526:118830-118849 | Msa1337470:CDS | 45.0% | |
| ! | CTTGACAAAGCATCTGGTTC+AGG | + | tig0001526:118872-118891 | Msa1337470:CDS | 45.0% |
| ATGCAACTCAAACTTGTCCC+TGG | + | tig0001526:118935-118954 | Msa1337470:CDS | 45.0% | |
| TCAGCCAAGGCAAAGGAAAT+AGG | + | tig0001526:119188-119207 | Msa1337470:CDS | 45.0% | |
| CAGCCAAGGCAAAGGAAATA+GGG | + | tig0001526:119189-119208 | Msa1337470:CDS | 45.0% | |
| GTTCCCTATTTCCTTTGCCT+TGG | - | tig0001526:119195-119214 | None:intergenic | 45.0% | |
| ! | ATTGGTTGGCTCTTTGGGAA+GGG | - | tig0001526:119452-119471 | None:intergenic | 45.0% |
| !! | GTGGACTAGTCAAGACAGAT+TGG | + | tig0001526:119519-119538 | Msa1337470:CDS | 45.0% |
| TTAATGCTCAGGCTTGCATC+TGG | + | tig0001526:119576-119595 | Msa1337470:CDS | 45.0% | |
| TGCAGAACTAGTTGAACCAC+AGG | - | tig0001526:119618-119637 | None:intergenic | 45.0% | |
| TTCATGGCTTTCACAGGAGT+TGG | + | tig0001526:119658-119677 | Msa1337470:CDS | 45.0% | |
| AGTTGGATGCTACTGCTCAA+GGG | + | tig0001526:119675-119694 | Msa1337470:CDS | 45.0% | |
| TGCTCAAGGGAGGTTGAAAT+GGG | + | tig0001526:119688-119707 | Msa1337470:CDS | 45.0% | |
| TAAGAGTGGTTACACTCTGG+AGG | - | tig0001526:119776-119795 | None:intergenic | 45.0% | |
| TGATGAAGAAGGGTGAATGG+TGG | - | tig0001526:118610-118629 | None:intergenic | 45.0% | |
| GTAATGAATGCCTTTGCTGC+TGG | + | tig0001526:118767-118786 | Msa1337470:CDS | 45.0% | |
| ! | GTTCAAGTTACCAGCAGCAA+AGG | - | tig0001526:118780-118799 | None:intergenic | 45.0% |
| ATATAACATGGGGAGATGGC+CGG | + | tig0001526:118810-118829 | Msa1337470:CDS | 45.0% | |
| CGGGCAAAGATCCTAAACAA+TGG | + | tig0001526:118830-118849 | Msa1337470:CDS | 45.0% | |
| ! | CTTGACAAAGCATCTGGTTC+AGG | + | tig0001526:118872-118891 | Msa1337470:CDS | 45.0% |
| ATGCAACTCAAACTTGTCCC+TGG | + | tig0001526:118935-118954 | Msa1337470:CDS | 45.0% | |
| TCAGCCAAGGCAAAGGAAAT+AGG | + | tig0001526:119188-119207 | Msa1337470:CDS | 45.0% | |
| CAGCCAAGGCAAAGGAAATA+GGG | + | tig0001526:119189-119208 | Msa1337470:CDS | 45.0% | |
| GTTCCCTATTTCCTTTGCCT+TGG | - | tig0001526:119195-119214 | None:intergenic | 45.0% | |
| ! | ATTGGTTGGCTCTTTGGGAA+GGG | - | tig0001526:119452-119471 | None:intergenic | 45.0% |
| !! | GTGGACTAGTCAAGACAGAT+TGG | + | tig0001526:119519-119538 | Msa1337470:CDS | 45.0% |
| TTAATGCTCAGGCTTGCATC+TGG | + | tig0001526:119576-119595 | Msa1337470:CDS | 45.0% | |
| TGCAGAACTAGTTGAACCAC+AGG | - | tig0001526:119618-119637 | None:intergenic | 45.0% | |
| TTCATGGCTTTCACAGGAGT+TGG | + | tig0001526:119658-119677 | Msa1337470:CDS | 45.0% | |
| AGTTGGATGCTACTGCTCAA+GGG | + | tig0001526:119675-119694 | Msa1337470:CDS | 45.0% | |
| TGCTCAAGGGAGGTTGAAAT+GGG | + | tig0001526:119688-119707 | Msa1337470:CDS | 45.0% | |
| TAAGAGTGGTTACACTCTGG+AGG | - | tig0001526:119776-119795 | None:intergenic | 45.0% | |
| TATAACATGGGGAGATGGCC+GGG | + | tig0001526:118811-118830 | Msa1337470:CDS | 50.0% | |
| CTATCATATGGAACCCCCAG+AGG | + | tig0001526:119263-119282 | Msa1337470:CDS | 50.0% | |
| ! | CATTGGTTGGCTCTTTGGGA+AGG | - | tig0001526:119453-119472 | None:intergenic | 50.0% |
| GCAGATAACTGGGCAACAAG+AGG | + | tig0001526:119497-119516 | Msa1337470:CDS | 50.0% | |
| GATAACTGGGCAACAAGAGG+TGG | + | tig0001526:119500-119519 | Msa1337470:CDS | 50.0% | |
| !! | TCTTCTGGAGCATCATCCTG+TGG | + | tig0001526:119599-119618 | Msa1337470:CDS | 50.0% |
| GCATCAAAGGAATCTGCCAG+AGG | + | tig0001526:119635-119654 | Msa1337470:CDS | 50.0% | |
| AGGAATCTGCCAGAGGTTCA+TGG | + | tig0001526:119642-119661 | Msa1337470:CDS | 50.0% | |
| CTGTGAAAGCCATGAACCTC+TGG | - | tig0001526:119654-119673 | None:intergenic | 50.0% | |
| CAGAGGTTCATGGCTTTCAC+AGG | + | tig0001526:119652-119671 | Msa1337470:CDS | 50.0% | |
| GAGTTGGATGCTACTGCTCA+AGG | + | tig0001526:119674-119693 | Msa1337470:CDS | 50.0% | |
| CTGCTCAAGGGAGGTTGAAA+TGG | + | tig0001526:119687-119706 | Msa1337470:CDS | 50.0% | |
| TATAACATGGGGAGATGGCC+GGG | + | tig0001526:118811-118830 | Msa1337470:CDS | 50.0% | |
| CTATCATATGGAACCCCCAG+AGG | + | tig0001526:119263-119282 | Msa1337470:CDS | 50.0% | |
| ! | CATTGGTTGGCTCTTTGGGA+AGG | - | tig0001526:119453-119472 | None:intergenic | 50.0% |
| GCAGATAACTGGGCAACAAG+AGG | + | tig0001526:119497-119516 | Msa1337470:CDS | 50.0% | |
| GATAACTGGGCAACAAGAGG+TGG | + | tig0001526:119500-119519 | Msa1337470:CDS | 50.0% | |
| !! | TCTTCTGGAGCATCATCCTG+TGG | + | tig0001526:119599-119618 | Msa1337470:CDS | 50.0% |
| GCATCAAAGGAATCTGCCAG+AGG | + | tig0001526:119635-119654 | Msa1337470:CDS | 50.0% | |
| AGGAATCTGCCAGAGGTTCA+TGG | + | tig0001526:119642-119661 | Msa1337470:CDS | 50.0% | |
| CTGTGAAAGCCATGAACCTC+TGG | - | tig0001526:119654-119673 | None:intergenic | 50.0% | |
| CAGAGGTTCATGGCTTTCAC+AGG | + | tig0001526:119652-119671 | Msa1337470:CDS | 50.0% | |
| GAGTTGGATGCTACTGCTCA+AGG | + | tig0001526:119674-119693 | Msa1337470:CDS | 50.0% | |
| CTGCTCAAGGGAGGTTGAAA+TGG | + | tig0001526:119687-119706 | Msa1337470:CDS | 50.0% | |
| CTTGTCCCTGGAAACTCTGC+TGG | + | tig0001526:118947-118966 | Msa1337470:CDS | 55.0% | |
| CAGTGCCAGCAGAGTTTCCA+GGG | - | tig0001526:118955-118974 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTTCC+AGG | - | tig0001526:118956-118975 | None:intergenic | 55.0% | |
| ! | CAGGCTTGCATCTGGTCTTC+TGG | + | tig0001526:119584-119603 | Msa1337470:CDS | 55.0% |
| TGGATGCTACTGCTCAAGGG+AGG | + | tig0001526:119678-119697 | Msa1337470:CDS | 55.0% | |
| ! | CACTCTGGAGGTAAACCCTG+TGG | - | tig0001526:119764-119783 | None:intergenic | 55.0% |
| CTTGTCCCTGGAAACTCTGC+TGG | + | tig0001526:118947-118966 | Msa1337470:CDS | 55.0% | |
| CAGTGCCAGCAGAGTTTCCA+GGG | - | tig0001526:118955-118974 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTTCC+AGG | - | tig0001526:118956-118975 | None:intergenic | 55.0% | |
| ! | CAGGCTTGCATCTGGTCTTC+TGG | + | tig0001526:119584-119603 | Msa1337470:CDS | 55.0% |
| TGGATGCTACTGCTCAAGGG+AGG | + | tig0001526:119678-119697 | Msa1337470:CDS | 55.0% | |
| ! | CACTCTGGAGGTAAACCCTG+TGG | - | tig0001526:119764-119783 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001526 | gene | 118573 | 119962 | 118573 | ID=Msa1337470;Name=Msa1337470 |
| tig0001526 | mRNA | 118573 | 119962 | 118573 | ID=Msa1337470-mRNA-1;Parent=Msa1337470;Name=Msa1337470-mRNA-1;_AED=0.29;_eAED=0.29;_QI=131|1|1|1|1|1|3|166|294 |
| tig0001526 | exon | 118573 | 118988 | 118573 | ID=Msa1337470-mRNA-1:exon:1155;Parent=Msa1337470-mRNA-1 |
| tig0001526 | exon | 119097 | 119290 | 119097 | ID=Msa1337470-mRNA-1:exon:1156;Parent=Msa1337470-mRNA-1 |
| tig0001526 | exon | 119391 | 119962 | 119391 | ID=Msa1337470-mRNA-1:exon:1157;Parent=Msa1337470-mRNA-1 |
| tig0001526 | five_prime_UTR | 118573 | 118703 | 118573 | ID=Msa1337470-mRNA-1:five_prime_utr;Parent=Msa1337470-mRNA-1 |
| tig0001526 | CDS | 118704 | 118988 | 118704 | ID=Msa1337470-mRNA-1:cds;Parent=Msa1337470-mRNA-1 |
| tig0001526 | CDS | 119097 | 119290 | 119097 | ID=Msa1337470-mRNA-1:cds;Parent=Msa1337470-mRNA-1 |
| tig0001526 | CDS | 119391 | 119796 | 119391 | ID=Msa1337470-mRNA-1:cds;Parent=Msa1337470-mRNA-1 |
| tig0001526 | three_prime_UTR | 119797 | 119962 | 119797 | ID=Msa1337470-mRNA-1:three_prime_utr;Parent=Msa1337470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
