Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221320 | XP_004507835.1 | 76.531 | 294 | 40 | 3 | 1 | 266 | 1 | 293 | 6.41e-146 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221320 | sp|Q38857|XTH22_ARATH | 58.929 | 280 | 83 | 4 | 12 | 263 | 6 | 281 | 6.63e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221320 | A0A1S2YP98 | 76.531 | 294 | 40 | 3 | 1 | 266 | 1 | 293 | 3.06e-146 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0464670 | Msa1221320 | 0.817807 | 2.722864e-52 | -8.615850e-47 |
| Msa1221320 | Msa1337470 | 0.806922 | 6.499823e-50 | -8.615850e-47 |
| Msa0510120 | Msa1221320 | 0.834028 | 3.798320e-56 | -8.615850e-47 |
| Msa0581390 | Msa1221320 | 0.907180 | 6.690749e-81 | -8.615850e-47 |
| Msa0853250 | Msa1221320 | 0.824886 | 6.331024e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221320 | MtrunA17_Chr4g0072611 | 65.000 | 280 | 65 | 5 | 12 | 263 | 6 | 280 | 3.84e-125 | 357 |
| Msa1221320 | MtrunA17_Chr4g0072671 | 67.897 | 271 | 56 | 4 | 25 | 266 | 20 | 288 | 1.22e-121 | 348 |
| Msa1221320 | MtrunA17_Chr7g0258911 | 63.509 | 285 | 68 | 4 | 7 | 263 | 3 | 279 | 5.81e-121 | 346 |
| Msa1221320 | MtrunA17_Chr4g0071341 | 64.207 | 271 | 65 | 2 | 21 | 263 | 15 | 281 | 1.34e-118 | 340 |
| Msa1221320 | MtrunA17_Chr4g0072681 | 71.951 | 246 | 38 | 3 | 52 | 266 | 1 | 246 | 7.22e-110 | 317 |
| Msa1221320 | MtrunA17_Chr4g0072601 | 58.076 | 291 | 86 | 8 | 1 | 263 | 1 | 283 | 1.12e-108 | 315 |
| Msa1221320 | MtrunA17_Chr2g0299061 | 58.571 | 280 | 86 | 3 | 12 | 263 | 9 | 286 | 6.29e-106 | 309 |
| Msa1221320 | MtrunA17_Chr8g0377841 | 55.479 | 292 | 89 | 4 | 2 | 265 | 5 | 283 | 1.46e-104 | 305 |
| Msa1221320 | MtrunA17_Chr3g0122031 | 54.983 | 291 | 89 | 4 | 1 | 263 | 1 | 277 | 1.59e-101 | 297 |
| Msa1221320 | MtrunA17_Chr3g0122021 | 54.983 | 291 | 89 | 4 | 1 | 263 | 1 | 277 | 1.93e-101 | 297 |
| Msa1221320 | MtrunA17_Chr8g0389641 | 47.797 | 295 | 75 | 5 | 1 | 266 | 1 | 245 | 8.78e-82 | 246 |
| Msa1221320 | MtrunA17_Chr7g0252631 | 41.156 | 294 | 138 | 5 | 3 | 266 | 2 | 290 | 6.60e-69 | 214 |
| Msa1221320 | MtrunA17_Chr5g0443391 | 40.550 | 291 | 132 | 4 | 1 | 263 | 1 | 278 | 1.67e-68 | 213 |
| Msa1221320 | MtrunA17_Chr7g0252621 | 44.747 | 257 | 109 | 4 | 38 | 266 | 39 | 290 | 2.08e-68 | 213 |
| Msa1221320 | MtrunA17_Chr6g0486581 | 41.115 | 287 | 132 | 7 | 8 | 263 | 3 | 283 | 8.35e-68 | 211 |
| Msa1221320 | MtrunA17_Chr7g0252601 | 43.846 | 260 | 107 | 5 | 38 | 266 | 39 | 290 | 3.76e-67 | 210 |
| Msa1221320 | MtrunA17_Chr3g0096651 | 41.667 | 264 | 118 | 2 | 28 | 263 | 27 | 282 | 7.81e-67 | 209 |
| Msa1221320 | MtrunA17_Chr4g0072641 | 62.130 | 169 | 42 | 3 | 98 | 266 | 5 | 151 | 9.25e-67 | 204 |
| Msa1221320 | MtrunA17_Chr4g0054451 | 39.931 | 288 | 136 | 8 | 5 | 263 | 10 | 289 | 4.81e-65 | 204 |
| Msa1221320 | MtrunA17_Chr6g0461761 | 39.863 | 291 | 135 | 5 | 8 | 263 | 2 | 287 | 1.23e-64 | 204 |
| Msa1221320 | MtrunA17_Chr2g0323161 | 38.754 | 289 | 133 | 4 | 7 | 263 | 10 | 286 | 1.26e-64 | 203 |
| Msa1221320 | MtrunA17_Chr4g0054431 | 39.792 | 289 | 135 | 8 | 4 | 263 | 9 | 287 | 1.74e-64 | 203 |
| Msa1221320 | MtrunA17_Chr6g0461731 | 39.590 | 293 | 142 | 5 | 1 | 263 | 23 | 310 | 1.74e-64 | 204 |
| Msa1221320 | MtrunA17_Chr1g0206681 | 37.710 | 297 | 140 | 8 | 5 | 263 | 2 | 291 | 6.91e-64 | 202 |
| Msa1221320 | MtrunA17_Chr4g0023961 | 36.678 | 289 | 148 | 4 | 9 | 265 | 5 | 290 | 1.36e-63 | 201 |
| Msa1221320 | MtrunA17_Chr1g0206081 | 36.577 | 298 | 152 | 5 | 2 | 266 | 4 | 297 | 6.23e-60 | 192 |
| Msa1221320 | MtrunA17_Chr8g0390201 | 45.604 | 182 | 93 | 3 | 85 | 263 | 31 | 209 | 8.40e-48 | 158 |
| Msa1221320 | MtrunA17_Chr4g0028221 | 31.746 | 315 | 147 | 11 | 3 | 263 | 4 | 304 | 2.21e-38 | 136 |
| Msa1221320 | MtrunA17_Chr8g0365231 | 28.881 | 277 | 159 | 6 | 22 | 263 | 37 | 310 | 1.68e-37 | 134 |
| Msa1221320 | MtrunA17_Chr2g0327411 | 32.963 | 270 | 132 | 10 | 30 | 263 | 53 | 309 | 1.06e-36 | 132 |
| Msa1221320 | MtrunA17_Chr8g0340001 | 35.065 | 231 | 114 | 7 | 62 | 263 | 8 | 231 | 1.02e-35 | 127 |
| Msa1221320 | MtrunA17_Chr7g0264731 | 31.636 | 275 | 138 | 9 | 26 | 264 | 32 | 292 | 7.03e-35 | 127 |
| Msa1221320 | MtrunA17_Chr8g0375981 | 29.195 | 298 | 163 | 6 | 1 | 263 | 6 | 290 | 2.07e-34 | 126 |
| Msa1221320 | MtrunA17_Chr1g0180451 | 31.801 | 261 | 128 | 7 | 39 | 263 | 48 | 294 | 4.18e-34 | 125 |
| Msa1221320 | MtrunA17_Chr1g0161951 | 30.620 | 258 | 139 | 4 | 39 | 263 | 41 | 291 | 9.59e-31 | 117 |
| Msa1221320 | MtrunA17_Chr4g0072631 | 68.354 | 79 | 23 | 2 | 1 | 78 | 1 | 78 | 1.04e-28 | 105 |
| Msa1221320 | MtrunA17_Chr5g0410621 | 28.625 | 269 | 153 | 6 | 31 | 264 | 42 | 306 | 1.23e-28 | 111 |
| Msa1221320 | MtrunA17_Chr2g0303861 | 28.328 | 293 | 150 | 11 | 15 | 263 | 1 | 277 | 1.13e-26 | 105 |
| Msa1221320 | MtrunA17_Chr2g0303721 | 28.159 | 277 | 158 | 9 | 10 | 260 | 13 | 274 | 2.74e-26 | 103 |
| Msa1221320 | MtrunA17_Chr8g0374231 | 44.444 | 108 | 56 | 2 | 159 | 266 | 1 | 104 | 8.80e-26 | 97.8 |
| Msa1221320 | MtrunA17_Chr7g0235541 | 33.028 | 218 | 103 | 9 | 78 | 263 | 1 | 207 | 9.97e-25 | 98.2 |
| Msa1221320 | MtrunA17_Chr8g0382041 | 27.341 | 267 | 146 | 8 | 35 | 263 | 38 | 294 | 4.49e-22 | 93.6 |
| Msa1221320 | MtrunA17_Chr8g0390181 | 46.591 | 88 | 44 | 2 | 11 | 97 | 7 | 92 | 1.91e-18 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221320 | AT5G57560.1 | 58.929 | 280 | 83 | 4 | 12 | 263 | 6 | 281 | 6.74e-117 | 337 |
| Msa1221320 | AT4G25810.1 | 60.000 | 280 | 79 | 4 | 12 | 263 | 9 | 283 | 4.17e-115 | 332 |
| Msa1221320 | AT5G57550.1 | 54.704 | 287 | 94 | 2 | 7 | 265 | 6 | 284 | 1.10e-110 | 321 |
| Msa1221320 | AT3G23730.1 | 54.355 | 287 | 100 | 4 | 8 | 266 | 6 | 289 | 5.09e-104 | 304 |
| Msa1221320 | AT5G48070.1 | 54.511 | 266 | 83 | 3 | 28 | 264 | 26 | 282 | 6.03e-103 | 301 |
| Msa1221320 | AT4G30270.1 | 52.431 | 288 | 86 | 4 | 7 | 266 | 4 | 268 | 2.56e-100 | 294 |
| Msa1221320 | AT4G14130.1 | 52.721 | 294 | 104 | 4 | 1 | 266 | 1 | 287 | 4.83e-100 | 294 |
| Msa1221320 | AT5G57530.1 | 53.532 | 269 | 86 | 3 | 27 | 264 | 23 | 283 | 2.17e-93 | 277 |
| Msa1221320 | AT5G57540.1 | 52.239 | 268 | 89 | 3 | 28 | 264 | 23 | 282 | 1.57e-91 | 272 |
| Msa1221320 | AT4G30280.1 | 49.147 | 293 | 107 | 5 | 1 | 264 | 3 | 282 | 1.35e-90 | 270 |
| Msa1221320 | AT4G30290.1 | 50.871 | 287 | 99 | 5 | 7 | 264 | 4 | 277 | 2.38e-90 | 269 |
| Msa1221320 | AT2G18800.1 | 47.826 | 299 | 117 | 8 | 1 | 263 | 1 | 296 | 6.22e-90 | 269 |
| Msa1221320 | AT4G25820.1 | 52.434 | 267 | 94 | 3 | 25 | 263 | 24 | 285 | 1.03e-88 | 265 |
| Msa1221320 | AT1G65310.2 | 52.075 | 265 | 89 | 3 | 28 | 263 | 48 | 303 | 4.44e-88 | 264 |
| Msa1221320 | AT1G65310.1 | 52.075 | 265 | 89 | 3 | 28 | 263 | 26 | 281 | 4.80e-88 | 263 |
| Msa1221320 | AT5G13870.2 | 46.457 | 254 | 103 | 4 | 38 | 263 | 39 | 287 | 1.39e-68 | 214 |
| Msa1221320 | AT5G13870.1 | 46.457 | 254 | 103 | 4 | 38 | 263 | 39 | 287 | 1.39e-68 | 214 |
| Msa1221320 | AT5G13870.3 | 46.457 | 254 | 103 | 4 | 38 | 263 | 39 | 287 | 1.39e-68 | 214 |
| Msa1221320 | AT2G06850.1 | 40.972 | 288 | 133 | 5 | 10 | 265 | 10 | 292 | 4.82e-64 | 202 |
| Msa1221320 | AT5G65730.1 | 35.789 | 285 | 148 | 5 | 9 | 264 | 13 | 291 | 6.92e-63 | 199 |
| Msa1221320 | AT4G03210.1 | 38.644 | 295 | 142 | 7 | 1 | 265 | 1 | 286 | 2.94e-62 | 197 |
| Msa1221320 | AT4G28850.1 | 36.014 | 286 | 144 | 5 | 12 | 264 | 9 | 288 | 3.25e-61 | 195 |
| Msa1221320 | AT1G11545.1 | 38.276 | 290 | 135 | 7 | 15 | 266 | 19 | 302 | 4.93e-61 | 195 |
| Msa1221320 | AT4G37800.1 | 37.201 | 293 | 147 | 6 | 1 | 264 | 6 | 290 | 2.27e-60 | 193 |
| Msa1221320 | AT2G14620.1 | 36.735 | 294 | 146 | 7 | 4 | 263 | 7 | 294 | 4.18e-59 | 190 |
| Msa1221320 | AT2G06850.2 | 42.735 | 234 | 101 | 4 | 61 | 266 | 5 | 233 | 9.91e-57 | 182 |
| Msa1221320 | AT4G03210.2 | 41.975 | 243 | 103 | 6 | 53 | 265 | 24 | 258 | 9.40e-56 | 180 |
| Msa1221320 | AT4G13090.1 | 38.621 | 290 | 125 | 11 | 16 | 263 | 10 | 288 | 8.06e-51 | 168 |
| Msa1221320 | AT2G14620.2 | 39.056 | 233 | 105 | 6 | 62 | 263 | 18 | 244 | 5.09e-50 | 165 |
| Msa1221320 | AT2G14620.3 | 39.286 | 224 | 99 | 6 | 71 | 263 | 16 | 233 | 3.40e-48 | 160 |
| Msa1221320 | AT4G13080.1 | 36.015 | 261 | 131 | 7 | 31 | 263 | 39 | 291 | 5.59e-47 | 159 |
| Msa1221320 | AT3G25050.1 | 33.716 | 261 | 139 | 6 | 31 | 263 | 35 | 289 | 8.20e-45 | 153 |
| Msa1221320 | AT3G44990.1 | 31.227 | 269 | 135 | 7 | 31 | 263 | 39 | 293 | 4.72e-34 | 125 |
| Msa1221320 | AT2G36870.1 | 32.593 | 270 | 132 | 8 | 30 | 263 | 42 | 297 | 6.36e-34 | 125 |
| Msa1221320 | AT1G10550.1 | 30.153 | 262 | 141 | 8 | 42 | 264 | 52 | 310 | 2.23e-31 | 118 |
| Msa1221320 | AT1G32170.1 | 29.066 | 289 | 163 | 7 | 13 | 263 | 9 | 293 | 3.79e-30 | 115 |
| Msa1221320 | AT1G14720.1 | 26.531 | 294 | 169 | 8 | 8 | 263 | 6 | 290 | 4.54e-29 | 112 |
| Msa1221320 | AT2G01850.1 | 27.148 | 291 | 169 | 7 | 9 | 263 | 7 | 290 | 1.82e-28 | 111 |
| Msa1221320 | AT4G18990.1 | 27.857 | 280 | 144 | 8 | 37 | 263 | 38 | 312 | 2.93e-24 | 100 |
| Msa1221320 | AT4G18990.2 | 31.737 | 167 | 97 | 4 | 109 | 263 | 77 | 238 | 1.61e-20 | 89.0 |
| Msa1221320 | AT3G48580.1 | 26.772 | 254 | 137 | 9 | 38 | 263 | 41 | 273 | 4.79e-19 | 84.7 |
| Msa1221320 | AT3G48580.2 | 26.496 | 234 | 143 | 9 | 38 | 263 | 41 | 253 | 7.78e-14 | 69.7 |
| Msa1221320 | AT3G48580.3 | 24.675 | 231 | 126 | 8 | 61 | 263 | 4 | 214 | 1.62e-13 | 68.6 |
Find 81 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATTGGTTGGCTCTT+TGG | 0.217423 | 8_1:-84870151 | None:intergenic |
| CAGGCTTGCATCTGGTCTTC+TGG | 0.231062 | 8_1:+84870280 | Msa1221320:CDS |
| TTCTCATTGGTTGGCTCTTT+GGG | 0.238486 | 8_1:-84870150 | None:intergenic |
| TGCTAGAATTGTACTGATAA+TGG | 0.255287 | 8_1:-84870529 | None:intergenic |
| TCAGCCAAGGCAAAGGAAAT+AGG | 0.272614 | 8_1:+84869877 | Msa1221320:intron |
| TCAAAGAATGAGTATCTCTT+TGG | 0.281236 | 8_1:+84869585 | Msa1221320:CDS |
| GGGAACAACAATTCTATCTA+TGG | 0.295441 | 8_1:+84869898 | Msa1221320:CDS |
| TTGTTCAGATTCTCAGTTGA+TGG | 0.305775 | 8_1:+84870079 | Msa1221320:intron |
| CAAAGGCATTCATTACCATT+AGG | 0.322287 | 8_1:-84869443 | None:intergenic |
| GCTAGAATTGTACTGATAAT+GGG | 0.323162 | 8_1:-84870528 | None:intergenic |
| AGAGATACTCATTCTTTGAT+TGG | 0.324085 | 8_1:-84869581 | None:intergenic |
| GTTTGTGGAATGCAGATAAC+TGG | 0.328198 | 8_1:+84870182 | Msa1221320:CDS |
| TGAGTTCTTGAACTCTCTAA+TGG | 0.332319 | 8_1:-84870107 | None:intergenic |
| TTCACACTTATTCTATCATA+TGG | 0.337748 | 8_1:+84869947 | Msa1221320:CDS |
| CTTGACAAAGCATCTGGTTC+AGG | 0.349485 | 8_1:+84869555 | Msa1221320:CDS |
| TGAGAATATATTCAAGTTTG+TGG | 0.357681 | 8_1:+84870167 | Msa1221320:CDS |
| TCTTCTTGTTAGCTCCCTAA+TGG | 0.360536 | 8_1:+84869428 | Msa1221320:CDS |
| GTTTGAAACTTGAAAGTAAG+AGG | 0.360565 | 8_1:-84869350 | None:intergenic |
| CTGGTCAAGGGAGGTTGAAA+TGG | 0.362354 | 8_1:+84870383 | Msa1221320:CDS |
| AAAGGCATTCATTACCATTA+GGG | 0.373219 | 8_1:-84869442 | None:intergenic |
| CAGCCAAGGCAAAGGAAATA+GGG | 0.382115 | 8_1:+84869878 | Msa1221320:intron |
| CATTGGTTGGCTCTTTGGGA+AGG | 0.395358 | 8_1:-84870146 | None:intergenic |
| AAACTTGAATATATTCTCAT+TGG | 0.404968 | 8_1:-84870163 | None:intergenic |
| GTTCCCTATTTCCTTTGCCT+TGG | 0.412829 | 8_1:-84869881 | None:intergenic |
| CAAAGAATGAGTATCTCTTT+GGG | 0.422787 | 8_1:+84869586 | Msa1221320:CDS |
| AGGACTCTGCCAGAGGTTCA+TGG | 0.427318 | 8_1:+84870338 | Msa1221320:CDS |
| TTCATGGCTTTCACAGGAGT+TGG | 0.429392 | 8_1:+84870354 | Msa1221320:CDS |
| CTGTGAAAGCCATGAACCTC+TGG | 0.431495 | 8_1:-84870347 | None:intergenic |
| GATGTTACACATTTGATGAA+TGG | 0.438457 | 8_1:-84870620 | None:intergenic |
| TTAATGCTCAGGCTTGCATC+TGG | 0.449779 | 8_1:+84870272 | Msa1221320:CDS |
| ACAGTGCCAGCAGAGTTTCC+AGG | 0.451981 | 8_1:-84869636 | None:intergenic |
| ATTGGTTGGCTCTTTGGGAA+GGG | 0.452250 | 8_1:-84870145 | None:intergenic |
| GAGAAACTTACATAATCCTC+TGG | 0.455201 | 8_1:-84869975 | None:intergenic |
| GAGTTCTTGAACTCTCTAAT+GGG | 0.471628 | 8_1:-84870106 | None:intergenic |
| CAAACACTTGATTATAGAGA+TGG | 0.472828 | 8_1:+84869368 | Msa1221320:exon |
| TTGAATATATTCTCATTGGT+TGG | 0.473138 | 8_1:-84870159 | None:intergenic |
| TCACAGGAGTTGGATGCTAC+TGG | 0.474886 | 8_1:+84870364 | Msa1221320:CDS |
| CTATCACTTGACAAAGCATC+TGG | 0.476052 | 8_1:+84869549 | Msa1221320:CDS |
| CAGAGGTTCATGGCTTTCAC+AGG | 0.492586 | 8_1:+84870348 | Msa1221320:CDS |
| TTTGAAACTTGAAAGTAAGA+GGG | 0.494996 | 8_1:-84869349 | None:intergenic |
| GAGTTGGATGCTACTGGTCA+AGG | 0.502874 | 8_1:+84870370 | Msa1221320:CDS |
| CTTGTCCCTGGAAACTCTGC+TGG | 0.507742 | 8_1:+84869630 | Msa1221320:CDS |
| TTTCTGTAGGAAGCTGTGAA+TGG | 0.517237 | 8_1:-84870247 | None:intergenic |
| GTGGACTAGTCAAGACAGAT+TGG | 0.526498 | 8_1:+84870215 | Msa1221320:CDS |
| TTCAACTAGTTCTGCATCAA+AGG | 0.528786 | 8_1:+84870318 | Msa1221320:CDS |
| ATGCAGCTCAAACTTGTCCC+TGG | 0.530798 | 8_1:+84869618 | Msa1221320:CDS |
| TGGTCAAGGGAGGTTGAAAT+GGG | 0.531256 | 8_1:+84870384 | Msa1221320:CDS |
| CTGAGCATTAAAATTTCTGT+AGG | 0.531432 | 8_1:-84870260 | None:intergenic |
| ACCAACACTTTGATATAACA+TGG | 0.533163 | 8_1:+84869481 | Msa1221320:CDS |
| GTAATGAATGCCTTTGCTGC+TGG | 0.536304 | 8_1:+84869450 | Msa1221320:CDS |
| CCCATGTTATATCAAAGTGT+TGG | 0.546049 | 8_1:-84869482 | None:intergenic |
| AGATACAAAACGATTTCCAC+AGG | 0.547822 | 8_1:+84870441 | Msa1221320:CDS |
| GTTCAAGTTACCAGCAGCAA+AGG | 0.548175 | 8_1:-84869460 | None:intergenic |
| AGAAACTTACATAATCCTCT+GGG | 0.548931 | 8_1:-84869974 | None:intergenic |
| AAAGATGTATGAAGCATGTT+GGG | 0.559756 | 8_1:-84869926 | None:intergenic |
| TTCAAGAACTCAGAGACTAC+TGG | 0.560460 | 8_1:+84870118 | Msa1221320:CDS |
| TAAGAGTGGTTGCACTCTGG+AGG | 0.577789 | 8_1:-84870469 | None:intergenic |
| CAGTGCCAGCAGAGTTTCCA+GGG | 0.583065 | 8_1:-84869635 | None:intergenic |
| CTAGAATTGTACTGATAATG+GGG | 0.583912 | 8_1:-84870527 | None:intergenic |
| GAAAGATGTATGAAGCATGT+TGG | 0.583935 | 8_1:-84869927 | None:intergenic |
| TTTGATATAACATGGGGAGA+TGG | 0.584508 | 8_1:+84869489 | Msa1221320:CDS |
| TGCAGAACTAGTTGAACCAC+AGG | 0.589225 | 8_1:-84870311 | None:intergenic |
| ATTAGGGAGCTAACAAGAAG+AGG | 0.592984 | 8_1:-84869426 | None:intergenic |
| GATAACTGGGCAACAAGAGG+TGG | 0.595641 | 8_1:+84870196 | Msa1221320:CDS |
| AGTTGGATGCTACTGGTCAA+GGG | 0.605563 | 8_1:+84870371 | Msa1221320:CDS |
| TAATGGGGAAATATTACAGA+GGG | 0.617567 | 8_1:-84870512 | None:intergenic |
| TTTGTGGAATGCAGATAACT+GGG | 0.620067 | 8_1:+84870183 | Msa1221320:CDS |
| CCAACACTTTGATATAACAT+GGG | 0.626993 | 8_1:+84869482 | Msa1221320:CDS |
| GCAGATAACTGGGCAACAAG+AGG | 0.630081 | 8_1:+84870193 | Msa1221320:CDS |
| TCTTCTGGAGCATCATCCTG+TGG | 0.630255 | 8_1:+84870295 | Msa1221320:CDS |
| GCATCAAAGGACTCTGCCAG+AGG | 0.647601 | 8_1:+84870331 | Msa1221320:CDS |
| CACTCTGGAGGTAAACCCTG+TGG | 0.651377 | 8_1:-84870457 | None:intergenic |
| AAACTTACATAATCCTCTGG+GGG | 0.667478 | 8_1:-84869972 | None:intergenic |
| CGAGCAAAGATACTAAACAA+TGG | 0.670646 | 8_1:+84869513 | Msa1221320:CDS |
| CAACACTTTGATATAACATG+GGG | 0.672613 | 8_1:+84869483 | Msa1221320:CDS |
| GATACAAAACGATTTCCACA+GGG | 0.673697 | 8_1:+84870442 | Msa1221320:CDS |
| TGGATGCTACTGGTCAAGGG+AGG | 0.687088 | 8_1:+84870374 | Msa1221320:CDS |
| ATAATGGGGAAATATTACAG+AGG | 0.692034 | 8_1:-84870513 | None:intergenic |
| GAAACTTACATAATCCTCTG+GGG | 0.703471 | 8_1:-84869973 | None:intergenic |
| AGTCAAGACAGATTGGACAA+AGG | 0.729558 | 8_1:+84870222 | Msa1221320:CDS |
| AATGGGGAAATATTACAGAG+GGG | 0.760579 | 8_1:-84870511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTATTCAATATAAAACA+TGG | - | chr8_1:84869727-84869746 | None:intergenic | 15.0% |
| !! | AATGTATTCAATATAAAACA+TGG | - | chr8_1:84869727-84869746 | None:intergenic | 15.0% |
| !! | AAAAAAACCAACTCTTTAAT+AGG | - | chr8_1:84869701-84869720 | None:intergenic | 20.0% |
| !! | AAACTTGAATATATTCTCAT+TGG | - | chr8_1:84870166-84870185 | None:intergenic | 20.0% |
| !! | AAAAAAACCAACTCTTTAAT+AGG | - | chr8_1:84869701-84869720 | None:intergenic | 20.0% |
| !! | AAACTTGAATATATTCTCAT+TGG | - | chr8_1:84870166-84870185 | None:intergenic | 20.0% |
| !! | TTTGAAACTTGAAAGTAAGA+GGG | - | chr8_1:84869352-84869371 | None:intergenic | 25.0% |
| ! | TTGTTAACCTATTAAAGAGT+TGG | + | chr8_1:84869691-84869710 | Msa1221320:intron | 25.0% |
| ! | TAGATAGACTATGAATTTCT+AGG | + | chr8_1:84869813-84869832 | Msa1221320:intron | 25.0% |
| ! | TTCACACTTATTCTATCATA+TGG | + | chr8_1:84869947-84869966 | Msa1221320:CDS | 25.0% |
| !! | GGTATTTAAGATGTAGAATA+AGG | - | chr8_1:84870020-84870039 | None:intergenic | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | - | chr8_1:84870162-84870181 | None:intergenic | 25.0% |
| !! | TGAGAATATATTCAAGTTTG+TGG | + | chr8_1:84870167-84870186 | Msa1221320:CDS | 25.0% |
| !!! | TAGTTTTCTCTTTTTAAGAG+TGG | - | chr8_1:84870486-84870505 | None:intergenic | 25.0% |
| !! | TTTGAAACTTGAAAGTAAGA+GGG | - | chr8_1:84869352-84869371 | None:intergenic | 25.0% |
| ! | TTGTTAACCTATTAAAGAGT+TGG | + | chr8_1:84869691-84869710 | Msa1221320:intron | 25.0% |
| ! | TAGATAGACTATGAATTTCT+AGG | + | chr8_1:84869813-84869832 | Msa1221320:intron | 25.0% |
| ! | TTCACACTTATTCTATCATA+TGG | + | chr8_1:84869947-84869966 | Msa1221320:CDS | 25.0% |
| !! | GGTATTTAAGATGTAGAATA+AGG | - | chr8_1:84870020-84870039 | None:intergenic | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | - | chr8_1:84870162-84870181 | None:intergenic | 25.0% |
| !! | TGAGAATATATTCAAGTTTG+TGG | + | chr8_1:84870167-84870186 | Msa1221320:CDS | 25.0% |
| !!! | TAGTTTTCTCTTTTTAAGAG+TGG | - | chr8_1:84870486-84870505 | None:intergenic | 25.0% |
| ! | GTTTGAAACTTGAAAGTAAG+AGG | - | chr8_1:84869353-84869372 | None:intergenic | 30.0% |
| CAAACACTTGATTATAGAGA+TGG | + | chr8_1:84869368-84869387 | Msa1221320:exon | 30.0% | |
| !! | AAAGGCATTCATTACCATTA+GGG | - | chr8_1:84869445-84869464 | None:intergenic | 30.0% |
| ACCAACACTTTGATATAACA+TGG | + | chr8_1:84869481-84869500 | Msa1221320:CDS | 30.0% | |
| CCAACACTTTGATATAACAT+GGG | + | chr8_1:84869482-84869501 | Msa1221320:CDS | 30.0% | |
| CAACACTTTGATATAACATG+GGG | + | chr8_1:84869483-84869502 | Msa1221320:CDS | 30.0% | |
| AGAGATACTCATTCTTTGAT+TGG | - | chr8_1:84869584-84869603 | None:intergenic | 30.0% | |
| TCAAAGAATGAGTATCTCTT+TGG | + | chr8_1:84869585-84869604 | Msa1221320:CDS | 30.0% | |
| CAAAGAATGAGTATCTCTTT+GGG | + | chr8_1:84869586-84869605 | Msa1221320:CDS | 30.0% | |
| TGTTTGCAGTTATCTTCAAA+AGG | + | chr8_1:84869777-84869796 | Msa1221320:intron | 30.0% | |
| TATCTTCAAAAGGATCAACT+TGG | + | chr8_1:84869787-84869806 | Msa1221320:intron | 30.0% | |
| ATCTTCAAAAGGATCAACTT+GGG | + | chr8_1:84869788-84869807 | Msa1221320:intron | 30.0% | |
| ! | GAATTTCTAGGAAATGTAAG+TGG | + | chr8_1:84869825-84869844 | Msa1221320:intron | 30.0% |
| AAAGATGTATGAAGCATGTT+GGG | - | chr8_1:84869929-84869948 | None:intergenic | 30.0% | |
| AGAAACTTACATAATCCTCT+GGG | - | chr8_1:84869977-84869996 | None:intergenic | 30.0% | |
| AGATGTAGAATAAGGAAACA+CGG | - | chr8_1:84870012-84870031 | None:intergenic | 30.0% | |
| CTGAGCATTAAAATTTCTGT+AGG | - | chr8_1:84870263-84870282 | None:intergenic | 30.0% | |
| !! | CTACAGAAATTTTAATGCTC+AGG | + | chr8_1:84870261-84870280 | Msa1221320:CDS | 30.0% |
| TAATGGGGAAATATTACAGA+GGG | - | chr8_1:84870515-84870534 | None:intergenic | 30.0% | |
| ! | ATAATGGGGAAATATTACAG+AGG | - | chr8_1:84870516-84870535 | None:intergenic | 30.0% |
| ! | CTAGAATTGTACTGATAATG+GGG | - | chr8_1:84870530-84870549 | None:intergenic | 30.0% |
| ! | GCTAGAATTGTACTGATAAT+GGG | - | chr8_1:84870531-84870550 | None:intergenic | 30.0% |
| ! | TGCTAGAATTGTACTGATAA+TGG | - | chr8_1:84870532-84870551 | None:intergenic | 30.0% |
| GATGTTACACATTTGATGAA+TGG | - | chr8_1:84870623-84870642 | None:intergenic | 30.0% | |
| ! | GTTTGAAACTTGAAAGTAAG+AGG | - | chr8_1:84869353-84869372 | None:intergenic | 30.0% |
| CAAACACTTGATTATAGAGA+TGG | + | chr8_1:84869368-84869387 | Msa1221320:exon | 30.0% | |
| !! | AAAGGCATTCATTACCATTA+GGG | - | chr8_1:84869445-84869464 | None:intergenic | 30.0% |
| ACCAACACTTTGATATAACA+TGG | + | chr8_1:84869481-84869500 | Msa1221320:CDS | 30.0% | |
| CCAACACTTTGATATAACAT+GGG | + | chr8_1:84869482-84869501 | Msa1221320:CDS | 30.0% | |
| CAACACTTTGATATAACATG+GGG | + | chr8_1:84869483-84869502 | Msa1221320:CDS | 30.0% | |
| AGAGATACTCATTCTTTGAT+TGG | - | chr8_1:84869584-84869603 | None:intergenic | 30.0% | |
| TCAAAGAATGAGTATCTCTT+TGG | + | chr8_1:84869585-84869604 | Msa1221320:CDS | 30.0% | |
| CAAAGAATGAGTATCTCTTT+GGG | + | chr8_1:84869586-84869605 | Msa1221320:CDS | 30.0% | |
| TGTTTGCAGTTATCTTCAAA+AGG | + | chr8_1:84869777-84869796 | Msa1221320:intron | 30.0% | |
| TATCTTCAAAAGGATCAACT+TGG | + | chr8_1:84869787-84869806 | Msa1221320:intron | 30.0% | |
| ATCTTCAAAAGGATCAACTT+GGG | + | chr8_1:84869788-84869807 | Msa1221320:intron | 30.0% | |
| ! | GAATTTCTAGGAAATGTAAG+TGG | + | chr8_1:84869825-84869844 | Msa1221320:intron | 30.0% |
| AAAGATGTATGAAGCATGTT+GGG | - | chr8_1:84869929-84869948 | None:intergenic | 30.0% | |
| AGAAACTTACATAATCCTCT+GGG | - | chr8_1:84869977-84869996 | None:intergenic | 30.0% | |
| AGATGTAGAATAAGGAAACA+CGG | - | chr8_1:84870012-84870031 | None:intergenic | 30.0% | |
| CTGAGCATTAAAATTTCTGT+AGG | - | chr8_1:84870263-84870282 | None:intergenic | 30.0% | |
| !! | CTACAGAAATTTTAATGCTC+AGG | + | chr8_1:84870261-84870280 | Msa1221320:CDS | 30.0% |
| TAATGGGGAAATATTACAGA+GGG | - | chr8_1:84870515-84870534 | None:intergenic | 30.0% | |
| ! | ATAATGGGGAAATATTACAG+AGG | - | chr8_1:84870516-84870535 | None:intergenic | 30.0% |
| ! | CTAGAATTGTACTGATAATG+GGG | - | chr8_1:84870530-84870549 | None:intergenic | 30.0% |
| ! | GCTAGAATTGTACTGATAAT+GGG | - | chr8_1:84870531-84870550 | None:intergenic | 30.0% |
| ! | TGCTAGAATTGTACTGATAA+TGG | - | chr8_1:84870532-84870551 | None:intergenic | 30.0% |
| GATGTTACACATTTGATGAA+TGG | - | chr8_1:84870623-84870642 | None:intergenic | 30.0% | |
| !! | CAAAGGCATTCATTACCATT+AGG | - | chr8_1:84869446-84869465 | None:intergenic | 35.0% |
| CCCATGTTATATCAAAGTGT+TGG | - | chr8_1:84869485-84869504 | None:intergenic | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr8_1:84869489-84869508 | Msa1221320:CDS | 35.0% | |
| CGAGCAAAGATACTAAACAA+TGG | + | chr8_1:84869513-84869532 | Msa1221320:CDS | 35.0% | |
| ACATTAGTGTGAAGGATGTA+TGG | - | chr8_1:84869855-84869874 | None:intergenic | 35.0% | |
| GGGAACAACAATTCTATCTA+TGG | + | chr8_1:84869898-84869917 | Msa1221320:CDS | 35.0% | |
| GAAAGATGTATGAAGCATGT+TGG | - | chr8_1:84869930-84869949 | None:intergenic | 35.0% | |
| AAACTTACATAATCCTCTGG+GGG | - | chr8_1:84869975-84869994 | None:intergenic | 35.0% | |
| GAAACTTACATAATCCTCTG+GGG | - | chr8_1:84869976-84869995 | None:intergenic | 35.0% | |
| GAGAAACTTACATAATCCTC+TGG | - | chr8_1:84869978-84869997 | None:intergenic | 35.0% | |
| ATGTAGAATAAGGAAACACG+GGG | - | chr8_1:84870010-84870029 | None:intergenic | 35.0% | |
| GATGTAGAATAAGGAAACAC+GGG | - | chr8_1:84870011-84870030 | None:intergenic | 35.0% | |
| TATAAGTCTATATGCCTGCA+GGG | - | chr8_1:84870041-84870060 | None:intergenic | 35.0% | |
| ATATAAGTCTATATGCCTGC+AGG | - | chr8_1:84870042-84870061 | None:intergenic | 35.0% | |
| TTGTTCAGATTCTCAGTTGA+TGG | + | chr8_1:84870079-84870098 | Msa1221320:intron | 35.0% | |
| GAGTTCTTGAACTCTCTAAT+GGG | - | chr8_1:84870109-84870128 | None:intergenic | 35.0% | |
| TGAGTTCTTGAACTCTCTAA+TGG | - | chr8_1:84870110-84870129 | None:intergenic | 35.0% | |
| TTTGTGGAATGCAGATAACT+GGG | + | chr8_1:84870183-84870202 | Msa1221320:CDS | 35.0% | |
| !! | TTCAACTAGTTCTGCATCAA+AGG | + | chr8_1:84870318-84870337 | Msa1221320:CDS | 35.0% |
| AGATACAAAACGATTTCCAC+AGG | + | chr8_1:84870441-84870460 | Msa1221320:CDS | 35.0% | |
| GATACAAAACGATTTCCACA+GGG | + | chr8_1:84870442-84870461 | Msa1221320:CDS | 35.0% | |
| AATGGGGAAATATTACAGAG+GGG | - | chr8_1:84870514-84870533 | None:intergenic | 35.0% | |
| ! | TTTTGATCTCTGTCATCACT+AGG | + | chr8_1:84870585-84870604 | Msa1221320:three_prime_UTR | 35.0% |
| !! | CAAAGGCATTCATTACCATT+AGG | - | chr8_1:84869446-84869465 | None:intergenic | 35.0% |
| CCCATGTTATATCAAAGTGT+TGG | - | chr8_1:84869485-84869504 | None:intergenic | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr8_1:84869489-84869508 | Msa1221320:CDS | 35.0% | |
| CGAGCAAAGATACTAAACAA+TGG | + | chr8_1:84869513-84869532 | Msa1221320:CDS | 35.0% | |
| ACATTAGTGTGAAGGATGTA+TGG | - | chr8_1:84869855-84869874 | None:intergenic | 35.0% | |
| GGGAACAACAATTCTATCTA+TGG | + | chr8_1:84869898-84869917 | Msa1221320:CDS | 35.0% | |
| GAAAGATGTATGAAGCATGT+TGG | - | chr8_1:84869930-84869949 | None:intergenic | 35.0% | |
| AAACTTACATAATCCTCTGG+GGG | - | chr8_1:84869975-84869994 | None:intergenic | 35.0% | |
| GAAACTTACATAATCCTCTG+GGG | - | chr8_1:84869976-84869995 | None:intergenic | 35.0% | |
| GAGAAACTTACATAATCCTC+TGG | - | chr8_1:84869978-84869997 | None:intergenic | 35.0% | |
| ATGTAGAATAAGGAAACACG+GGG | - | chr8_1:84870010-84870029 | None:intergenic | 35.0% | |
| GATGTAGAATAAGGAAACAC+GGG | - | chr8_1:84870011-84870030 | None:intergenic | 35.0% | |
| TATAAGTCTATATGCCTGCA+GGG | - | chr8_1:84870041-84870060 | None:intergenic | 35.0% | |
| ATATAAGTCTATATGCCTGC+AGG | - | chr8_1:84870042-84870061 | None:intergenic | 35.0% | |
| TTGTTCAGATTCTCAGTTGA+TGG | + | chr8_1:84870079-84870098 | Msa1221320:intron | 35.0% | |
| GAGTTCTTGAACTCTCTAAT+GGG | - | chr8_1:84870109-84870128 | None:intergenic | 35.0% | |
| TGAGTTCTTGAACTCTCTAA+TGG | - | chr8_1:84870110-84870129 | None:intergenic | 35.0% | |
| TTTGTGGAATGCAGATAACT+GGG | + | chr8_1:84870183-84870202 | Msa1221320:CDS | 35.0% | |
| !! | TTCAACTAGTTCTGCATCAA+AGG | + | chr8_1:84870318-84870337 | Msa1221320:CDS | 35.0% |
| AGATACAAAACGATTTCCAC+AGG | + | chr8_1:84870441-84870460 | Msa1221320:CDS | 35.0% | |
| GATACAAAACGATTTCCACA+GGG | + | chr8_1:84870442-84870461 | Msa1221320:CDS | 35.0% | |
| AATGGGGAAATATTACAGAG+GGG | - | chr8_1:84870514-84870533 | None:intergenic | 35.0% | |
| ! | TTTTGATCTCTGTCATCACT+AGG | + | chr8_1:84870585-84870604 | Msa1221320:three_prime_UTR | 35.0% |
| ATTAGGGAGCTAACAAGAAG+AGG | - | chr8_1:84869429-84869448 | None:intergenic | 40.0% | |
| TCTTCTTGTTAGCTCCCTAA+TGG | + | chr8_1:84869428-84869447 | Msa1221320:CDS | 40.0% | |
| ! | CTATCACTTGACAAAGCATC+TGG | + | chr8_1:84869549-84869568 | Msa1221320:CDS | 40.0% |
| GGCTGAAAACATTAGTGTGA+AGG | - | chr8_1:84869863-84869882 | None:intergenic | 40.0% | |
| ! | CACACTAATGTTTTCAGCCA+AGG | + | chr8_1:84869864-84869883 | Msa1221320:intron | 40.0% |
| ! | AATGTTTTCAGCCAAGGCAA+AGG | + | chr8_1:84869870-84869889 | Msa1221320:intron | 40.0% |
| CTACATCTTAAATACCCTGC+AGG | + | chr8_1:84870024-84870043 | Msa1221320:intron | 40.0% | |
| TTCAAGAACTCAGAGACTAC+TGG | + | chr8_1:84870118-84870137 | Msa1221320:CDS | 40.0% | |
| ! | TTCTCATTGGTTGGCTCTTT+GGG | - | chr8_1:84870153-84870172 | None:intergenic | 40.0% |
| ! | ATTCTCATTGGTTGGCTCTT+TGG | - | chr8_1:84870154-84870173 | None:intergenic | 40.0% |
| GTTTGTGGAATGCAGATAAC+TGG | + | chr8_1:84870182-84870201 | Msa1221320:CDS | 40.0% | |
| AGTCAAGACAGATTGGACAA+AGG | + | chr8_1:84870222-84870241 | Msa1221320:CDS | 40.0% | |
| TTTCTGTAGGAAGCTGTGAA+TGG | - | chr8_1:84870250-84870269 | None:intergenic | 40.0% | |
| !! | TTTTAAGAGTGGTTGCACTC+TGG | - | chr8_1:84870475-84870494 | None:intergenic | 40.0% |
| ATTAGGGAGCTAACAAGAAG+AGG | - | chr8_1:84869429-84869448 | None:intergenic | 40.0% | |
| TCTTCTTGTTAGCTCCCTAA+TGG | + | chr8_1:84869428-84869447 | Msa1221320:CDS | 40.0% | |
| ! | CTATCACTTGACAAAGCATC+TGG | + | chr8_1:84869549-84869568 | Msa1221320:CDS | 40.0% |
| GGCTGAAAACATTAGTGTGA+AGG | - | chr8_1:84869863-84869882 | None:intergenic | 40.0% | |
| ! | CACACTAATGTTTTCAGCCA+AGG | + | chr8_1:84869864-84869883 | Msa1221320:intron | 40.0% |
| ! | AATGTTTTCAGCCAAGGCAA+AGG | + | chr8_1:84869870-84869889 | Msa1221320:intron | 40.0% |
| CTACATCTTAAATACCCTGC+AGG | + | chr8_1:84870024-84870043 | Msa1221320:intron | 40.0% | |
| TTCAAGAACTCAGAGACTAC+TGG | + | chr8_1:84870118-84870137 | Msa1221320:CDS | 40.0% | |
| ! | TTCTCATTGGTTGGCTCTTT+GGG | - | chr8_1:84870153-84870172 | None:intergenic | 40.0% |
| ! | ATTCTCATTGGTTGGCTCTT+TGG | - | chr8_1:84870154-84870173 | None:intergenic | 40.0% |
| GTTTGTGGAATGCAGATAAC+TGG | + | chr8_1:84870182-84870201 | Msa1221320:CDS | 40.0% | |
| AGTCAAGACAGATTGGACAA+AGG | + | chr8_1:84870222-84870241 | Msa1221320:CDS | 40.0% | |
| TTTCTGTAGGAAGCTGTGAA+TGG | - | chr8_1:84870250-84870269 | None:intergenic | 40.0% | |
| !! | TTTTAAGAGTGGTTGCACTC+TGG | - | chr8_1:84870475-84870494 | None:intergenic | 40.0% |
| GTAATGAATGCCTTTGCTGC+TGG | + | chr8_1:84869450-84869469 | Msa1221320:CDS | 45.0% | |
| ! | GTTCAAGTTACCAGCAGCAA+AGG | - | chr8_1:84869463-84869482 | None:intergenic | 45.0% |
| ! | CTTGACAAAGCATCTGGTTC+AGG | + | chr8_1:84869555-84869574 | Msa1221320:CDS | 45.0% |
| TCAGCCAAGGCAAAGGAAAT+AGG | + | chr8_1:84869877-84869896 | Msa1221320:intron | 45.0% | |
| CAGCCAAGGCAAAGGAAATA+GGG | + | chr8_1:84869878-84869897 | Msa1221320:intron | 45.0% | |
| GTTCCCTATTTCCTTTGCCT+TGG | - | chr8_1:84869884-84869903 | None:intergenic | 45.0% | |
| ! | ATTGGTTGGCTCTTTGGGAA+GGG | - | chr8_1:84870148-84870167 | None:intergenic | 45.0% |
| !! | GTGGACTAGTCAAGACAGAT+TGG | + | chr8_1:84870215-84870234 | Msa1221320:CDS | 45.0% |
| TTAATGCTCAGGCTTGCATC+TGG | + | chr8_1:84870272-84870291 | Msa1221320:CDS | 45.0% | |
| TGCAGAACTAGTTGAACCAC+AGG | - | chr8_1:84870314-84870333 | None:intergenic | 45.0% | |
| TTCATGGCTTTCACAGGAGT+TGG | + | chr8_1:84870354-84870373 | Msa1221320:CDS | 45.0% | |
| AGTTGGATGCTACTGGTCAA+GGG | + | chr8_1:84870371-84870390 | Msa1221320:CDS | 45.0% | |
| TGGTCAAGGGAGGTTGAAAT+GGG | + | chr8_1:84870384-84870403 | Msa1221320:CDS | 45.0% | |
| GTAATGAATGCCTTTGCTGC+TGG | + | chr8_1:84869450-84869469 | Msa1221320:CDS | 45.0% | |
| ! | GTTCAAGTTACCAGCAGCAA+AGG | - | chr8_1:84869463-84869482 | None:intergenic | 45.0% |
| ! | CTTGACAAAGCATCTGGTTC+AGG | + | chr8_1:84869555-84869574 | Msa1221320:CDS | 45.0% |
| TCAGCCAAGGCAAAGGAAAT+AGG | + | chr8_1:84869877-84869896 | Msa1221320:intron | 45.0% | |
| CAGCCAAGGCAAAGGAAATA+GGG | + | chr8_1:84869878-84869897 | Msa1221320:intron | 45.0% | |
| GTTCCCTATTTCCTTTGCCT+TGG | - | chr8_1:84869884-84869903 | None:intergenic | 45.0% | |
| ! | ATTGGTTGGCTCTTTGGGAA+GGG | - | chr8_1:84870148-84870167 | None:intergenic | 45.0% |
| !! | GTGGACTAGTCAAGACAGAT+TGG | + | chr8_1:84870215-84870234 | Msa1221320:CDS | 45.0% |
| TTAATGCTCAGGCTTGCATC+TGG | + | chr8_1:84870272-84870291 | Msa1221320:CDS | 45.0% | |
| TGCAGAACTAGTTGAACCAC+AGG | - | chr8_1:84870314-84870333 | None:intergenic | 45.0% | |
| TTCATGGCTTTCACAGGAGT+TGG | + | chr8_1:84870354-84870373 | Msa1221320:CDS | 45.0% | |
| AGTTGGATGCTACTGGTCAA+GGG | + | chr8_1:84870371-84870390 | Msa1221320:CDS | 45.0% | |
| TGGTCAAGGGAGGTTGAAAT+GGG | + | chr8_1:84870384-84870403 | Msa1221320:CDS | 45.0% | |
| ATGCAGCTCAAACTTGTCCC+TGG | + | chr8_1:84869618-84869637 | Msa1221320:CDS | 50.0% | |
| CTATCATATGGAACCCCCAG+AGG | + | chr8_1:84869959-84869978 | Msa1221320:CDS | 50.0% | |
| ! | CATTGGTTGGCTCTTTGGGA+AGG | - | chr8_1:84870149-84870168 | None:intergenic | 50.0% |
| GCAGATAACTGGGCAACAAG+AGG | + | chr8_1:84870193-84870212 | Msa1221320:CDS | 50.0% | |
| GATAACTGGGCAACAAGAGG+TGG | + | chr8_1:84870196-84870215 | Msa1221320:CDS | 50.0% | |
| !! | TCTTCTGGAGCATCATCCTG+TGG | + | chr8_1:84870295-84870314 | Msa1221320:CDS | 50.0% |
| CTGTGAAAGCCATGAACCTC+TGG | - | chr8_1:84870350-84870369 | None:intergenic | 50.0% | |
| CAGAGGTTCATGGCTTTCAC+AGG | + | chr8_1:84870348-84870367 | Msa1221320:CDS | 50.0% | |
| TCACAGGAGTTGGATGCTAC+TGG | + | chr8_1:84870364-84870383 | Msa1221320:CDS | 50.0% | |
| GAGTTGGATGCTACTGGTCA+AGG | + | chr8_1:84870370-84870389 | Msa1221320:CDS | 50.0% | |
| CTGGTCAAGGGAGGTTGAAA+TGG | + | chr8_1:84870383-84870402 | Msa1221320:CDS | 50.0% | |
| TAAGAGTGGTTGCACTCTGG+AGG | - | chr8_1:84870472-84870491 | None:intergenic | 50.0% | |
| ATGCAGCTCAAACTTGTCCC+TGG | + | chr8_1:84869618-84869637 | Msa1221320:CDS | 50.0% | |
| CTATCATATGGAACCCCCAG+AGG | + | chr8_1:84869959-84869978 | Msa1221320:CDS | 50.0% | |
| ! | CATTGGTTGGCTCTTTGGGA+AGG | - | chr8_1:84870149-84870168 | None:intergenic | 50.0% |
| GCAGATAACTGGGCAACAAG+AGG | + | chr8_1:84870193-84870212 | Msa1221320:CDS | 50.0% | |
| GATAACTGGGCAACAAGAGG+TGG | + | chr8_1:84870196-84870215 | Msa1221320:CDS | 50.0% | |
| !! | TCTTCTGGAGCATCATCCTG+TGG | + | chr8_1:84870295-84870314 | Msa1221320:CDS | 50.0% |
| CTGTGAAAGCCATGAACCTC+TGG | - | chr8_1:84870350-84870369 | None:intergenic | 50.0% | |
| CAGAGGTTCATGGCTTTCAC+AGG | + | chr8_1:84870348-84870367 | Msa1221320:CDS | 50.0% | |
| TCACAGGAGTTGGATGCTAC+TGG | + | chr8_1:84870364-84870383 | Msa1221320:CDS | 50.0% | |
| GAGTTGGATGCTACTGGTCA+AGG | + | chr8_1:84870370-84870389 | Msa1221320:CDS | 50.0% | |
| CTGGTCAAGGGAGGTTGAAA+TGG | + | chr8_1:84870383-84870402 | Msa1221320:CDS | 50.0% | |
| TAAGAGTGGTTGCACTCTGG+AGG | - | chr8_1:84870472-84870491 | None:intergenic | 50.0% | |
| CTTGTCCCTGGAAACTCTGC+TGG | + | chr8_1:84869630-84869649 | Msa1221320:CDS | 55.0% | |
| CAGTGCCAGCAGAGTTTCCA+GGG | - | chr8_1:84869638-84869657 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTTCC+AGG | - | chr8_1:84869639-84869658 | None:intergenic | 55.0% | |
| ! | CAGGCTTGCATCTGGTCTTC+TGG | + | chr8_1:84870280-84870299 | Msa1221320:CDS | 55.0% |
| GCATCAAAGGACTCTGCCAG+AGG | + | chr8_1:84870331-84870350 | Msa1221320:CDS | 55.0% | |
| AGGACTCTGCCAGAGGTTCA+TGG | + | chr8_1:84870338-84870357 | Msa1221320:CDS | 55.0% | |
| TGGATGCTACTGGTCAAGGG+AGG | + | chr8_1:84870374-84870393 | Msa1221320:CDS | 55.0% | |
| ! | CACTCTGGAGGTAAACCCTG+TGG | - | chr8_1:84870460-84870479 | None:intergenic | 55.0% |
| CTTGTCCCTGGAAACTCTGC+TGG | + | chr8_1:84869630-84869649 | Msa1221320:CDS | 55.0% | |
| CAGTGCCAGCAGAGTTTCCA+GGG | - | chr8_1:84869638-84869657 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTTCC+AGG | - | chr8_1:84869639-84869658 | None:intergenic | 55.0% | |
| ! | CAGGCTTGCATCTGGTCTTC+TGG | + | chr8_1:84870280-84870299 | Msa1221320:CDS | 55.0% |
| GCATCAAAGGACTCTGCCAG+AGG | + | chr8_1:84870331-84870350 | Msa1221320:CDS | 55.0% | |
| AGGACTCTGCCAGAGGTTCA+TGG | + | chr8_1:84870338-84870357 | Msa1221320:CDS | 55.0% | |
| TGGATGCTACTGGTCAAGGG+AGG | + | chr8_1:84870374-84870393 | Msa1221320:CDS | 55.0% | |
| ! | CACTCTGGAGGTAAACCCTG+TGG | - | chr8_1:84870460-84870479 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84869313 | 84870658 | 84869313 | ID=Msa1221320;Name=Msa1221320 |
| chr8_1 | mRNA | 84869313 | 84870658 | 84869313 | ID=Msa1221320-mRNA-1;Parent=Msa1221320;Name=Msa1221320-mRNA-1;_AED=0.40;_eAED=0.40;_QI=74|0.5|0.66|1|1|1|3|166|266 |
| chr8_1 | exon | 84869313 | 84869675 | 84869313 | ID=Msa1221320-mRNA-1:exon:30471;Parent=Msa1221320-mRNA-1 |
| chr8_1 | exon | 84869881 | 84869986 | 84869881 | ID=Msa1221320-mRNA-1:exon:30472;Parent=Msa1221320-mRNA-1 |
| chr8_1 | exon | 84870087 | 84870658 | 84870087 | ID=Msa1221320-mRNA-1:exon:30473;Parent=Msa1221320-mRNA-1 |
| chr8_1 | five_prime_UTR | 84869313 | 84869386 | 84869313 | ID=Msa1221320-mRNA-1:five_prime_utr;Parent=Msa1221320-mRNA-1 |
| chr8_1 | CDS | 84869387 | 84869675 | 84869387 | ID=Msa1221320-mRNA-1:cds;Parent=Msa1221320-mRNA-1 |
| chr8_1 | CDS | 84869881 | 84869986 | 84869881 | ID=Msa1221320-mRNA-1:cds;Parent=Msa1221320-mRNA-1 |
| chr8_1 | CDS | 84870087 | 84870492 | 84870087 | ID=Msa1221320-mRNA-1:cds;Parent=Msa1221320-mRNA-1 |
| chr8_1 | three_prime_UTR | 84870493 | 84870658 | 84870493 | ID=Msa1221320-mRNA-1:three_prime_utr;Parent=Msa1221320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
