Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581390 | AES92351.1 | 90.970 | 299 | 6 | 2 | 1 | 299 | 1 | 278 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581390 | sp|Q38857|XTH22_ARATH | 69.474 | 285 | 78 | 3 | 12 | 296 | 6 | 281 | 8.35e-153 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581390 | G7JD13 | 90.970 | 299 | 6 | 2 | 1 | 299 | 1 | 278 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0418300 | Msa0581390 | 0.824669 | 7.122217e-54 | -8.615850e-47 |
| Msa0510120 | Msa0581390 | 0.819777 | 9.719039e-53 | -8.615850e-47 |
| Msa0511820 | Msa0581390 | 0.800003 | 1.767214e-48 | -8.615850e-47 |
| Msa0581390 | Msa0731990 | 0.808481 | 3.032401e-50 | -8.615850e-47 |
| Msa0581390 | Msa0853250 | 0.803978 | 2.692578e-49 | -8.615850e-47 |
| Msa0581390 | Msa1221320 | 0.907180 | 6.690749e-81 | -8.615850e-47 |
| Msa0581390 | Msa1337470 | 0.912280 | 2.332440e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581390 | MtrunA17_Chr4g0072611 | 77.895 | 285 | 53 | 2 | 12 | 296 | 6 | 280 | 4.37e-165 | 459 |
| Msa0581390 | MtrunA17_Chr4g0072681 | 88.048 | 251 | 22 | 2 | 52 | 299 | 1 | 246 | 2.46e-164 | 456 |
| Msa0581390 | MtrunA17_Chr4g0072671 | 81.159 | 276 | 44 | 3 | 25 | 299 | 20 | 288 | 3.11e-162 | 452 |
| Msa0581390 | MtrunA17_Chr7g0258911 | 76.552 | 290 | 55 | 3 | 7 | 296 | 3 | 279 | 7.26e-162 | 451 |
| Msa0581390 | MtrunA17_Chr4g0071341 | 75.000 | 276 | 60 | 2 | 21 | 296 | 15 | 281 | 2.03e-153 | 430 |
| Msa0581390 | MtrunA17_Chr4g0072601 | 68.243 | 296 | 81 | 5 | 1 | 296 | 1 | 283 | 1.19e-145 | 410 |
| Msa0581390 | MtrunA17_Chr2g0299061 | 71.228 | 285 | 75 | 2 | 12 | 296 | 9 | 286 | 1.44e-144 | 408 |
| Msa0581390 | MtrunA17_Chr8g0377841 | 67.003 | 297 | 80 | 3 | 2 | 298 | 5 | 283 | 2.05e-143 | 405 |
| Msa0581390 | MtrunA17_Chr3g0122031 | 67.114 | 298 | 79 | 3 | 1 | 298 | 1 | 279 | 5.88e-142 | 401 |
| Msa0581390 | MtrunA17_Chr3g0122021 | 67.114 | 298 | 79 | 3 | 1 | 298 | 1 | 279 | 7.01e-142 | 401 |
| Msa0581390 | MtrunA17_Chr8g0389641 | 60.333 | 300 | 63 | 4 | 1 | 299 | 1 | 245 | 2.72e-122 | 350 |
| Msa0581390 | MtrunA17_Chr6g0486581 | 51.370 | 292 | 128 | 4 | 8 | 296 | 3 | 283 | 4.94e-103 | 302 |
| Msa0581390 | MtrunA17_Chr3g0096651 | 52.788 | 269 | 114 | 2 | 28 | 296 | 27 | 282 | 6.48e-100 | 295 |
| Msa0581390 | MtrunA17_Chr7g0252631 | 49.664 | 298 | 138 | 4 | 3 | 298 | 2 | 289 | 1.25e-99 | 294 |
| Msa0581390 | MtrunA17_Chr5g0443391 | 49.662 | 296 | 131 | 4 | 1 | 296 | 1 | 278 | 5.03e-99 | 292 |
| Msa0581390 | MtrunA17_Chr7g0252621 | 54.406 | 261 | 109 | 3 | 38 | 298 | 39 | 289 | 6.61e-99 | 292 |
| Msa0581390 | MtrunA17_Chr7g0252601 | 53.788 | 264 | 106 | 4 | 38 | 298 | 39 | 289 | 6.59e-98 | 290 |
| Msa0581390 | MtrunA17_Chr6g0461731 | 49.329 | 298 | 139 | 4 | 1 | 296 | 23 | 310 | 1.80e-97 | 289 |
| Msa0581390 | MtrunA17_Chr6g0461761 | 49.662 | 296 | 132 | 4 | 8 | 296 | 2 | 287 | 2.69e-97 | 288 |
| Msa0581390 | MtrunA17_Chr4g0054451 | 46.575 | 292 | 144 | 6 | 5 | 296 | 10 | 289 | 2.81e-92 | 275 |
| Msa0581390 | MtrunA17_Chr4g0054431 | 46.416 | 293 | 143 | 6 | 4 | 296 | 9 | 287 | 7.84e-92 | 274 |
| Msa0581390 | MtrunA17_Chr2g0323161 | 46.599 | 294 | 136 | 4 | 7 | 296 | 10 | 286 | 1.59e-91 | 273 |
| Msa0581390 | MtrunA17_Chr1g0206681 | 44.702 | 302 | 145 | 5 | 5 | 296 | 2 | 291 | 5.62e-91 | 272 |
| Msa0581390 | MtrunA17_Chr4g0023961 | 44.898 | 294 | 150 | 4 | 9 | 298 | 5 | 290 | 1.99e-90 | 271 |
| Msa0581390 | MtrunA17_Chr1g0206081 | 44.407 | 295 | 156 | 4 | 7 | 299 | 9 | 297 | 1.18e-87 | 264 |
| Msa0581390 | MtrunA17_Chr8g0390201 | 55.276 | 199 | 88 | 1 | 98 | 296 | 12 | 209 | 1.50e-77 | 235 |
| Msa0581390 | MtrunA17_Chr8g0340001 | 45.763 | 236 | 115 | 5 | 62 | 296 | 8 | 231 | 2.24e-66 | 207 |
| Msa0581390 | MtrunA17_Chr4g0028221 | 38.486 | 317 | 156 | 10 | 3 | 296 | 4 | 304 | 3.70e-62 | 199 |
| Msa0581390 | MtrunA17_Chr2g0327411 | 41.176 | 272 | 140 | 9 | 30 | 296 | 53 | 309 | 4.29e-60 | 194 |
| Msa0581390 | MtrunA17_Chr7g0264731 | 37.906 | 277 | 151 | 7 | 26 | 297 | 32 | 292 | 2.57e-58 | 189 |
| Msa0581390 | MtrunA17_Chr4g0072641 | 66.667 | 135 | 26 | 2 | 165 | 299 | 36 | 151 | 5.75e-58 | 183 |
| Msa0581390 | MtrunA17_Chr1g0180451 | 39.544 | 263 | 138 | 7 | 39 | 296 | 48 | 294 | 1.65e-57 | 186 |
| Msa0581390 | MtrunA17_Chr8g0375981 | 35.333 | 300 | 175 | 7 | 1 | 296 | 6 | 290 | 6.16e-56 | 184 |
| Msa0581390 | MtrunA17_Chr8g0365231 | 35.125 | 279 | 172 | 6 | 22 | 296 | 37 | 310 | 9.28e-56 | 182 |
| Msa0581390 | MtrunA17_Chr2g0303861 | 37.037 | 297 | 152 | 9 | 15 | 296 | 1 | 277 | 1.53e-55 | 181 |
| Msa0581390 | MtrunA17_Chr5g0410621 | 35.793 | 271 | 164 | 6 | 31 | 297 | 42 | 306 | 3.49e-52 | 174 |
| Msa0581390 | MtrunA17_Chr1g0161951 | 37.692 | 260 | 151 | 5 | 39 | 296 | 41 | 291 | 4.47e-52 | 173 |
| Msa0581390 | MtrunA17_Chr2g0303721 | 35.517 | 290 | 153 | 9 | 10 | 293 | 13 | 274 | 9.17e-51 | 169 |
| Msa0581390 | MtrunA17_Chr7g0235541 | 42.009 | 219 | 115 | 6 | 78 | 296 | 1 | 207 | 7.03e-50 | 164 |
| Msa0581390 | MtrunA17_Chr8g0382041 | 33.955 | 268 | 160 | 7 | 35 | 296 | 38 | 294 | 1.38e-45 | 157 |
| Msa0581390 | MtrunA17_Chr4g0072631 | 68.354 | 79 | 23 | 2 | 1 | 78 | 1 | 78 | 2.82e-28 | 105 |
| Msa0581390 | MtrunA17_Chr8g0374231 | 44.444 | 108 | 56 | 2 | 192 | 299 | 1 | 104 | 2.95e-25 | 97.1 |
| Msa0581390 | MtrunA17_Chr8g0390181 | 46.067 | 89 | 45 | 2 | 11 | 98 | 7 | 93 | 3.80e-18 | 78.2 |
| Msa0581390 | MtrunA17_Chr8g0350711 | 31.638 | 177 | 112 | 5 | 53 | 229 | 54 | 221 | 5.41e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0581390 | AT5G57560.1 | 69.474 | 285 | 78 | 3 | 12 | 296 | 6 | 281 | 8.49e-154 | 431 |
| Msa0581390 | AT4G25810.1 | 71.579 | 285 | 71 | 3 | 12 | 296 | 9 | 283 | 3.55e-153 | 430 |
| Msa0581390 | AT5G57550.1 | 66.096 | 292 | 86 | 2 | 7 | 298 | 6 | 284 | 4.34e-149 | 419 |
| Msa0581390 | AT3G23730.1 | 65.529 | 293 | 93 | 4 | 7 | 299 | 5 | 289 | 1.44e-141 | 400 |
| Msa0581390 | AT4G30270.1 | 63.140 | 293 | 80 | 3 | 7 | 299 | 4 | 268 | 1.39e-138 | 392 |
| Msa0581390 | AT5G48070.1 | 65.314 | 271 | 79 | 3 | 28 | 297 | 26 | 282 | 5.50e-138 | 391 |
| Msa0581390 | AT4G14130.1 | 63.880 | 299 | 96 | 4 | 1 | 299 | 1 | 287 | 9.47e-138 | 391 |
| Msa0581390 | AT5G57530.1 | 66.423 | 274 | 76 | 3 | 27 | 297 | 23 | 283 | 2.45e-132 | 377 |
| Msa0581390 | AT5G57540.1 | 65.568 | 273 | 78 | 3 | 28 | 297 | 23 | 282 | 5.00e-131 | 374 |
| Msa0581390 | AT2G18800.1 | 58.553 | 304 | 110 | 5 | 1 | 296 | 1 | 296 | 5.88e-129 | 369 |
| Msa0581390 | AT4G30280.1 | 58.389 | 298 | 105 | 4 | 1 | 297 | 3 | 282 | 1.82e-125 | 360 |
| Msa0581390 | AT4G30290.1 | 60.274 | 292 | 97 | 4 | 7 | 297 | 4 | 277 | 2.39e-125 | 359 |
| Msa0581390 | AT4G25820.1 | 63.971 | 272 | 88 | 2 | 25 | 296 | 24 | 285 | 1.00e-123 | 355 |
| Msa0581390 | AT1G65310.2 | 62.963 | 270 | 85 | 3 | 28 | 296 | 48 | 303 | 2.67e-123 | 355 |
| Msa0581390 | AT1G65310.1 | 62.963 | 270 | 85 | 3 | 28 | 296 | 26 | 281 | 3.94e-123 | 353 |
| Msa0581390 | AT5G13870.2 | 55.985 | 259 | 104 | 3 | 38 | 296 | 39 | 287 | 4.73e-98 | 290 |
| Msa0581390 | AT5G13870.1 | 55.985 | 259 | 104 | 3 | 38 | 296 | 39 | 287 | 4.73e-98 | 290 |
| Msa0581390 | AT5G13870.3 | 55.985 | 259 | 104 | 3 | 38 | 296 | 39 | 287 | 4.73e-98 | 290 |
| Msa0581390 | AT4G28850.1 | 46.392 | 291 | 140 | 5 | 12 | 297 | 9 | 288 | 3.02e-94 | 281 |
| Msa0581390 | AT2G06850.1 | 49.488 | 293 | 134 | 4 | 10 | 298 | 10 | 292 | 2.78e-93 | 278 |
| Msa0581390 | AT4G03210.1 | 46.333 | 300 | 145 | 6 | 1 | 298 | 1 | 286 | 4.06e-90 | 270 |
| Msa0581390 | AT5G65730.1 | 42.907 | 289 | 155 | 4 | 9 | 297 | 13 | 291 | 9.39e-90 | 269 |
| Msa0581390 | AT4G37800.1 | 45.455 | 297 | 150 | 6 | 1 | 297 | 6 | 290 | 9.80e-90 | 269 |
| Msa0581390 | AT1G11545.1 | 46.233 | 292 | 142 | 6 | 15 | 299 | 19 | 302 | 2.07e-88 | 266 |
| Msa0581390 | AT2G14620.1 | 43.813 | 299 | 151 | 4 | 4 | 296 | 7 | 294 | 4.01e-87 | 263 |
| Msa0581390 | AT2G06850.2 | 53.361 | 238 | 101 | 3 | 61 | 298 | 5 | 232 | 5.87e-86 | 258 |
| Msa0581390 | AT4G03210.2 | 51.210 | 248 | 106 | 5 | 53 | 298 | 24 | 258 | 1.77e-83 | 252 |
| Msa0581390 | AT4G13090.1 | 47.119 | 295 | 126 | 9 | 16 | 296 | 10 | 288 | 1.01e-78 | 241 |
| Msa0581390 | AT2G14620.2 | 47.899 | 238 | 110 | 3 | 62 | 296 | 18 | 244 | 5.80e-78 | 238 |
| Msa0581390 | AT2G14620.3 | 48.472 | 229 | 104 | 3 | 71 | 296 | 16 | 233 | 3.44e-76 | 233 |
| Msa0581390 | AT4G13080.1 | 44.322 | 273 | 125 | 7 | 31 | 296 | 39 | 291 | 1.58e-73 | 228 |
| Msa0581390 | AT3G25050.1 | 41.729 | 266 | 144 | 5 | 31 | 296 | 35 | 289 | 3.00e-70 | 219 |
| Msa0581390 | AT3G44990.1 | 40.441 | 272 | 139 | 9 | 31 | 296 | 39 | 293 | 7.86e-58 | 187 |
| Msa0581390 | AT2G36870.1 | 39.706 | 272 | 143 | 7 | 30 | 296 | 42 | 297 | 1.23e-57 | 187 |
| Msa0581390 | AT1G32170.1 | 34.354 | 294 | 174 | 7 | 13 | 296 | 9 | 293 | 6.67e-53 | 176 |
| Msa0581390 | AT1G10550.1 | 36.364 | 264 | 155 | 7 | 42 | 297 | 52 | 310 | 1.55e-51 | 172 |
| Msa0581390 | AT1G14720.1 | 32.770 | 296 | 181 | 7 | 8 | 296 | 6 | 290 | 2.57e-51 | 172 |
| Msa0581390 | AT2G01850.1 | 32.313 | 294 | 185 | 7 | 8 | 296 | 6 | 290 | 4.76e-49 | 166 |
| Msa0581390 | AT4G18990.1 | 33.688 | 282 | 158 | 7 | 37 | 296 | 38 | 312 | 1.29e-45 | 158 |
| Msa0581390 | AT3G48580.1 | 33.846 | 260 | 144 | 9 | 38 | 296 | 41 | 273 | 2.66e-40 | 142 |
| Msa0581390 | AT4G18990.2 | 33.617 | 235 | 133 | 6 | 80 | 296 | 9 | 238 | 4.86e-40 | 141 |
| Msa0581390 | AT3G48580.3 | 32.489 | 237 | 133 | 8 | 61 | 296 | 4 | 214 | 9.66e-35 | 125 |
| Msa0581390 | AT2G36870.2 | 41.135 | 141 | 74 | 3 | 30 | 165 | 42 | 178 | 4.84e-28 | 107 |
| Msa0581390 | AT3G48580.2 | 29.615 | 260 | 135 | 10 | 38 | 296 | 41 | 253 | 5.08e-24 | 98.6 |
Find 84 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATTGGTTGGCTCTT+TGG | 0.217423 | 4_1:-86767801 | None:intergenic |
| CAGGCTTGCATCTGGTCTTC+TGG | 0.231062 | 4_1:+86767930 | Msa0581390:CDS |
| TTCTCATTGGTTGGCTCTTT+GGG | 0.238486 | 4_1:-86767800 | None:intergenic |
| TGCTAGAATTGTACTGATAA+TGG | 0.255287 | 4_1:-86768179 | None:intergenic |
| TCAGCCAAGGCAAAGGAAAT+AGG | 0.272614 | 4_1:+86767534 | Msa0581390:CDS |
| TCAAAGAATGAGTATCTCTT+TGG | 0.281236 | 4_1:+86767242 | Msa0581390:CDS |
| GGGAACAACAATTCTATCTA+TGG | 0.295441 | 4_1:+86767555 | Msa0581390:CDS |
| TTGTTCAGATTCTCAGTTGA+TGG | 0.305775 | 4_1:+86767729 | Msa0581390:intron |
| TTCACACTTATTCTATCATA+TGG | 0.312027 | 4_1:+86767597 | Msa0581390:CDS |
| CAAAGGCATTCATTACCATT+AGG | 0.322287 | 4_1:-86767100 | None:intergenic |
| GCTAGAATTGTACTGATAAT+GGG | 0.323162 | 4_1:-86768178 | None:intergenic |
| AGAGATACTCATTCTTTGAT+TGG | 0.324085 | 4_1:-86767238 | None:intergenic |
| GTTTGTGGAATGCAGATAAC+TGG | 0.328198 | 4_1:+86767832 | Msa0581390:CDS |
| TGAGTTCTTGAACTCTCTAA+TGG | 0.332319 | 4_1:-86767757 | None:intergenic |
| GAGATAGACTATGAATTTCT+AGG | 0.342269 | 4_1:+86767470 | Msa0581390:CDS |
| CTTGACAAAGCATCTGGTTC+AGG | 0.349485 | 4_1:+86767212 | Msa0581390:CDS |
| TGAGAATATATTCAAGTTTG+TGG | 0.357681 | 4_1:+86767817 | Msa0581390:CDS |
| TCTTCTTGTTAGCTCCCTAA+TGG | 0.360536 | 4_1:+86767085 | Msa0581390:CDS |
| CTGGTCAAGGGAGGTTGAAA+TGG | 0.362354 | 4_1:+86768033 | Msa0581390:CDS |
| AAAGGCATTCATTACCATTA+GGG | 0.373219 | 4_1:-86767099 | None:intergenic |
| CAGCCAAGGCAAAGGAAATA+GGG | 0.382115 | 4_1:+86767535 | Msa0581390:CDS |
| CATTGGTTGGCTCTTTGGGA+AGG | 0.395358 | 4_1:-86767796 | None:intergenic |
| AAACTTGAATATATTCTCAT+TGG | 0.404968 | 4_1:-86767813 | None:intergenic |
| GTTCCCTATTTCCTTTGCCT+TGG | 0.412829 | 4_1:-86767538 | None:intergenic |
| CAAAGAATGAGTATCTCTTT+GGG | 0.422787 | 4_1:+86767243 | Msa0581390:CDS |
| AGGACTCTGCCAGAGGTTCA+TGG | 0.427318 | 4_1:+86767988 | Msa0581390:CDS |
| GATGTTACACATTTGATGAA+TGG | 0.438457 | 4_1:-86768270 | None:intergenic |
| TTCATGGCTTTCACATGAGT+TGG | 0.444610 | 4_1:+86768004 | Msa0581390:CDS |
| TTAATGCTCAGGCTTGCATC+TGG | 0.449779 | 4_1:+86767922 | Msa0581390:CDS |
| ATGTGAAAGCCATGAACCTC+TGG | 0.450904 | 4_1:-86767997 | None:intergenic |
| ACAGTGCCAGCAGAGTTTCC+AGG | 0.451981 | 4_1:-86767293 | None:intergenic |
| ATTGGTTGGCTCTTTGGGAA+GGG | 0.452250 | 4_1:-86767795 | None:intergenic |
| GAGAAACTTACATAATCCTC+TGG | 0.455201 | 4_1:-86767625 | None:intergenic |
| TCACATGAGTTGGATGCTAC+TGG | 0.471235 | 4_1:+86768014 | Msa0581390:CDS |
| GAGTTCTTGAACTCTCTAAT+GGG | 0.471628 | 4_1:-86767756 | None:intergenic |
| TTGAATATATTCTCATTGGT+TGG | 0.473138 | 4_1:-86767809 | None:intergenic |
| TGTTTGCAGTTATCTTCAAA+AGG | 0.475341 | 4_1:+86767434 | Msa0581390:intron |
| CTATCACTTGACAAAGCATC+TGG | 0.476052 | 4_1:+86767206 | Msa0581390:CDS |
| ACATTAGTGTGAAGGATGTA+TGG | 0.498460 | 4_1:-86767509 | None:intergenic |
| GAGTTGGATGCTACTGGTCA+AGG | 0.502874 | 4_1:+86768020 | Msa0581390:CDS |
| CTTGTCCCTGGAAACTCTGC+TGG | 0.507742 | 4_1:+86767287 | Msa0581390:CDS |
| AAGTGTGAAAATCAGCTGTT+GGG | 0.511857 | 4_1:-86767583 | None:intergenic |
| TTCAAGAACTCAGAGACTAT+TGG | 0.514298 | 4_1:+86767768 | Msa0581390:CDS |
| TTTCTGTAGGAAGCTGTGAA+TGG | 0.517237 | 4_1:-86767897 | None:intergenic |
| TATCTTCAAAAGGATCAACT+TGG | 0.519769 | 4_1:+86767444 | Msa0581390:CDS |
| TAAGTGTGAAAATCAGCTGT+TGG | 0.524540 | 4_1:-86767584 | None:intergenic |
| GTGGACTAGTCAAGACAGAT+TGG | 0.526498 | 4_1:+86767865 | Msa0581390:CDS |
| TTCAACTAGTTCTGCATCAA+AGG | 0.528786 | 4_1:+86767968 | Msa0581390:CDS |
| ATGCAGCTCAAACTTGTCCC+TGG | 0.530798 | 4_1:+86767275 | Msa0581390:CDS |
| TGGTCAAGGGAGGTTGAAAT+GGG | 0.531256 | 4_1:+86768034 | Msa0581390:CDS |
| CTGAGCATTAAAATTTCTGT+AGG | 0.531432 | 4_1:-86767910 | None:intergenic |
| ACCAACACTTTGATATAACA+TGG | 0.533163 | 4_1:+86767138 | Msa0581390:CDS |
| GTAATGAATGCCTTTGCTGC+TGG | 0.536304 | 4_1:+86767107 | Msa0581390:CDS |
| CCCATGTTATATCAAAGTGT+TGG | 0.546049 | 4_1:-86767139 | None:intergenic |
| AGATACAAAACGATTTCCAC+AGG | 0.547822 | 4_1:+86768091 | Msa0581390:CDS |
| GTTCAAGTTACCAGCAGCAA+AGG | 0.548175 | 4_1:-86767117 | None:intergenic |
| AGAAACTTACATAATCCTCT+GGG | 0.548931 | 4_1:-86767624 | None:intergenic |
| TAAGAGTGGTTGCACTCTGG+AGG | 0.577789 | 4_1:-86768119 | None:intergenic |
| ATCTTCAAAAGGATCAACTT+GGG | 0.581399 | 4_1:+86767445 | Msa0581390:CDS |
| CAGTGCCAGCAGAGTTTCCA+GGG | 0.583065 | 4_1:-86767292 | None:intergenic |
| CTAGAATTGTACTGATAATG+GGG | 0.583912 | 4_1:-86768177 | None:intergenic |
| TTTGATATAACATGGGGAGA+TGG | 0.584508 | 4_1:+86767146 | Msa0581390:CDS |
| TGCAGAACTAGTTGAACCAC+AGG | 0.589225 | 4_1:-86767961 | None:intergenic |
| ATTAGGGAGCTAACAAGAAG+AGG | 0.592984 | 4_1:-86767083 | None:intergenic |
| GATAACTGGGCAACAAGAGG+TGG | 0.595641 | 4_1:+86767846 | Msa0581390:CDS |
| AGTTGGATGCTACTGGTCAA+GGG | 0.605563 | 4_1:+86768021 | Msa0581390:CDS |
| TAATGGGGAAATATTACAGA+GGG | 0.617567 | 4_1:-86768162 | None:intergenic |
| GGCTGAAAACATTAGTGTGA+AGG | 0.617871 | 4_1:-86767517 | None:intergenic |
| TTTGTGGAATGCAGATAACT+GGG | 0.620067 | 4_1:+86767833 | Msa0581390:CDS |
| CCAACACTTTGATATAACAT+GGG | 0.626993 | 4_1:+86767139 | Msa0581390:CDS |
| GCAGATAACTGGGCAACAAG+AGG | 0.630081 | 4_1:+86767843 | Msa0581390:CDS |
| TCTTCTGGAGCATCATCCTG+TGG | 0.630255 | 4_1:+86767945 | Msa0581390:CDS |
| GCATCAAAGGACTCTGCCAG+AGG | 0.647601 | 4_1:+86767981 | Msa0581390:CDS |
| GAATTTCTAGGAAATGTAAG+TGG | 0.651069 | 4_1:+86767482 | Msa0581390:CDS |
| CACTCTGGAGGTAAACCCTG+TGG | 0.651377 | 4_1:-86768107 | None:intergenic |
| AAACTTACATAATCCTCTGG+GGG | 0.667478 | 4_1:-86767622 | None:intergenic |
| CGAGCAAAGATACTAAACAA+TGG | 0.670646 | 4_1:+86767170 | Msa0581390:CDS |
| CAACACTTTGATATAACATG+GGG | 0.672613 | 4_1:+86767140 | Msa0581390:CDS |
| GATACAAAACGATTTCCACA+GGG | 0.673697 | 4_1:+86768092 | Msa0581390:CDS |
| TGGATGCTACTGGTCAAGGG+AGG | 0.687088 | 4_1:+86768024 | Msa0581390:CDS |
| ATAATGGGGAAATATTACAG+AGG | 0.692034 | 4_1:-86768163 | None:intergenic |
| GAAACTTACATAATCCTCTG+GGG | 0.703471 | 4_1:-86767623 | None:intergenic |
| AGTCAAGACAGATTGGACAA+AGG | 0.729558 | 4_1:+86767872 | Msa0581390:CDS |
| AATGGGGAAATATTACAGAG+GGG | 0.760579 | 4_1:-86768161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTATTCAATATAAAACA+TGG | - | chr4_1:86767384-86767403 | None:intergenic | 15.0% |
| !! | AATGTATTCAATATAAAACA+TGG | - | chr4_1:86767384-86767403 | None:intergenic | 15.0% |
| !! | AAAAAAACCAACTCTTTAAT+AGG | - | chr4_1:86767358-86767377 | None:intergenic | 20.0% |
| !! | AAACTTGAATATATTCTCAT+TGG | - | chr4_1:86767816-86767835 | None:intergenic | 20.0% |
| !! | AAAAAAACCAACTCTTTAAT+AGG | - | chr4_1:86767358-86767377 | None:intergenic | 20.0% |
| !! | AAACTTGAATATATTCTCAT+TGG | - | chr4_1:86767816-86767835 | None:intergenic | 20.0% |
| ! | TTGTTAACCTATTAAAGAGT+TGG | + | chr4_1:86767348-86767367 | Msa0581390:intron | 25.0% |
| ! | TTCACACTTATTCTATCATA+TGG | + | chr4_1:86767597-86767616 | Msa0581390:CDS | 25.0% |
| !! | GGTATTTAAGATGTAGAATA+AGG | - | chr4_1:86767670-86767689 | None:intergenic | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | - | chr4_1:86767812-86767831 | None:intergenic | 25.0% |
| !! | TGAGAATATATTCAAGTTTG+TGG | + | chr4_1:86767817-86767836 | Msa0581390:CDS | 25.0% |
| !!! | TAGTTTTCTCTTTTTAAGAG+TGG | - | chr4_1:86768136-86768155 | None:intergenic | 25.0% |
| ! | TTGTTAACCTATTAAAGAGT+TGG | + | chr4_1:86767348-86767367 | Msa0581390:intron | 25.0% |
| ! | TTCACACTTATTCTATCATA+TGG | + | chr4_1:86767597-86767616 | Msa0581390:CDS | 25.0% |
| !! | GGTATTTAAGATGTAGAATA+AGG | - | chr4_1:86767670-86767689 | None:intergenic | 25.0% |
| ! | TTGAATATATTCTCATTGGT+TGG | - | chr4_1:86767812-86767831 | None:intergenic | 25.0% |
| !! | TGAGAATATATTCAAGTTTG+TGG | + | chr4_1:86767817-86767836 | Msa0581390:CDS | 25.0% |
| !!! | TAGTTTTCTCTTTTTAAGAG+TGG | - | chr4_1:86768136-86768155 | None:intergenic | 25.0% |
| !! | AAAGGCATTCATTACCATTA+GGG | - | chr4_1:86767102-86767121 | None:intergenic | 30.0% |
| ACCAACACTTTGATATAACA+TGG | + | chr4_1:86767138-86767157 | Msa0581390:CDS | 30.0% | |
| CCAACACTTTGATATAACAT+GGG | + | chr4_1:86767139-86767158 | Msa0581390:CDS | 30.0% | |
| CAACACTTTGATATAACATG+GGG | + | chr4_1:86767140-86767159 | Msa0581390:CDS | 30.0% | |
| AGAGATACTCATTCTTTGAT+TGG | - | chr4_1:86767241-86767260 | None:intergenic | 30.0% | |
| TCAAAGAATGAGTATCTCTT+TGG | + | chr4_1:86767242-86767261 | Msa0581390:CDS | 30.0% | |
| CAAAGAATGAGTATCTCTTT+GGG | + | chr4_1:86767243-86767262 | Msa0581390:CDS | 30.0% | |
| TGTTTGCAGTTATCTTCAAA+AGG | + | chr4_1:86767434-86767453 | Msa0581390:intron | 30.0% | |
| TATCTTCAAAAGGATCAACT+TGG | + | chr4_1:86767444-86767463 | Msa0581390:CDS | 30.0% | |
| ATCTTCAAAAGGATCAACTT+GGG | + | chr4_1:86767445-86767464 | Msa0581390:CDS | 30.0% | |
| GAGATAGACTATGAATTTCT+AGG | + | chr4_1:86767470-86767489 | Msa0581390:CDS | 30.0% | |
| ! | GAATTTCTAGGAAATGTAAG+TGG | + | chr4_1:86767482-86767501 | Msa0581390:CDS | 30.0% |
| AGAAACTTACATAATCCTCT+GGG | - | chr4_1:86767627-86767646 | None:intergenic | 30.0% | |
| AGATGTAGAATAAGGAAACA+CGG | - | chr4_1:86767662-86767681 | None:intergenic | 30.0% | |
| CTGAGCATTAAAATTTCTGT+AGG | - | chr4_1:86767913-86767932 | None:intergenic | 30.0% | |
| !! | CTACAGAAATTTTAATGCTC+AGG | + | chr4_1:86767911-86767930 | Msa0581390:CDS | 30.0% |
| TAATGGGGAAATATTACAGA+GGG | - | chr4_1:86768165-86768184 | None:intergenic | 30.0% | |
| ! | ATAATGGGGAAATATTACAG+AGG | - | chr4_1:86768166-86768185 | None:intergenic | 30.0% |
| ! | CTAGAATTGTACTGATAATG+GGG | - | chr4_1:86768180-86768199 | None:intergenic | 30.0% |
| ! | GCTAGAATTGTACTGATAAT+GGG | - | chr4_1:86768181-86768200 | None:intergenic | 30.0% |
| ! | TGCTAGAATTGTACTGATAA+TGG | - | chr4_1:86768182-86768201 | None:intergenic | 30.0% |
| GATGTTACACATTTGATGAA+TGG | - | chr4_1:86768273-86768292 | None:intergenic | 30.0% | |
| !! | AAAGGCATTCATTACCATTA+GGG | - | chr4_1:86767102-86767121 | None:intergenic | 30.0% |
| ACCAACACTTTGATATAACA+TGG | + | chr4_1:86767138-86767157 | Msa0581390:CDS | 30.0% | |
| CCAACACTTTGATATAACAT+GGG | + | chr4_1:86767139-86767158 | Msa0581390:CDS | 30.0% | |
| CAACACTTTGATATAACATG+GGG | + | chr4_1:86767140-86767159 | Msa0581390:CDS | 30.0% | |
| AGAGATACTCATTCTTTGAT+TGG | - | chr4_1:86767241-86767260 | None:intergenic | 30.0% | |
| TCAAAGAATGAGTATCTCTT+TGG | + | chr4_1:86767242-86767261 | Msa0581390:CDS | 30.0% | |
| CAAAGAATGAGTATCTCTTT+GGG | + | chr4_1:86767243-86767262 | Msa0581390:CDS | 30.0% | |
| TGTTTGCAGTTATCTTCAAA+AGG | + | chr4_1:86767434-86767453 | Msa0581390:intron | 30.0% | |
| TATCTTCAAAAGGATCAACT+TGG | + | chr4_1:86767444-86767463 | Msa0581390:CDS | 30.0% | |
| ATCTTCAAAAGGATCAACTT+GGG | + | chr4_1:86767445-86767464 | Msa0581390:CDS | 30.0% | |
| GAGATAGACTATGAATTTCT+AGG | + | chr4_1:86767470-86767489 | Msa0581390:CDS | 30.0% | |
| ! | GAATTTCTAGGAAATGTAAG+TGG | + | chr4_1:86767482-86767501 | Msa0581390:CDS | 30.0% |
| AGAAACTTACATAATCCTCT+GGG | - | chr4_1:86767627-86767646 | None:intergenic | 30.0% | |
| AGATGTAGAATAAGGAAACA+CGG | - | chr4_1:86767662-86767681 | None:intergenic | 30.0% | |
| CTGAGCATTAAAATTTCTGT+AGG | - | chr4_1:86767913-86767932 | None:intergenic | 30.0% | |
| !! | CTACAGAAATTTTAATGCTC+AGG | + | chr4_1:86767911-86767930 | Msa0581390:CDS | 30.0% |
| TAATGGGGAAATATTACAGA+GGG | - | chr4_1:86768165-86768184 | None:intergenic | 30.0% | |
| ! | ATAATGGGGAAATATTACAG+AGG | - | chr4_1:86768166-86768185 | None:intergenic | 30.0% |
| ! | CTAGAATTGTACTGATAATG+GGG | - | chr4_1:86768180-86768199 | None:intergenic | 30.0% |
| ! | GCTAGAATTGTACTGATAAT+GGG | - | chr4_1:86768181-86768200 | None:intergenic | 30.0% |
| ! | TGCTAGAATTGTACTGATAA+TGG | - | chr4_1:86768182-86768201 | None:intergenic | 30.0% |
| GATGTTACACATTTGATGAA+TGG | - | chr4_1:86768273-86768292 | None:intergenic | 30.0% | |
| !! | CAAAGGCATTCATTACCATT+AGG | - | chr4_1:86767103-86767122 | None:intergenic | 35.0% |
| CCCATGTTATATCAAAGTGT+TGG | - | chr4_1:86767142-86767161 | None:intergenic | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr4_1:86767146-86767165 | Msa0581390:CDS | 35.0% | |
| CGAGCAAAGATACTAAACAA+TGG | + | chr4_1:86767170-86767189 | Msa0581390:CDS | 35.0% | |
| ACATTAGTGTGAAGGATGTA+TGG | - | chr4_1:86767512-86767531 | None:intergenic | 35.0% | |
| GGGAACAACAATTCTATCTA+TGG | + | chr4_1:86767555-86767574 | Msa0581390:CDS | 35.0% | |
| AAGTGTGAAAATCAGCTGTT+GGG | - | chr4_1:86767586-86767605 | None:intergenic | 35.0% | |
| TAAGTGTGAAAATCAGCTGT+TGG | - | chr4_1:86767587-86767606 | None:intergenic | 35.0% | |
| AAACTTACATAATCCTCTGG+GGG | - | chr4_1:86767625-86767644 | None:intergenic | 35.0% | |
| GAAACTTACATAATCCTCTG+GGG | - | chr4_1:86767626-86767645 | None:intergenic | 35.0% | |
| GAGAAACTTACATAATCCTC+TGG | - | chr4_1:86767628-86767647 | None:intergenic | 35.0% | |
| ATGTAGAATAAGGAAACACG+GGG | - | chr4_1:86767660-86767679 | None:intergenic | 35.0% | |
| GATGTAGAATAAGGAAACAC+GGG | - | chr4_1:86767661-86767680 | None:intergenic | 35.0% | |
| TATAAGTCTATATGCCTGCA+GGG | - | chr4_1:86767691-86767710 | None:intergenic | 35.0% | |
| ATATAAGTCTATATGCCTGC+AGG | - | chr4_1:86767692-86767711 | None:intergenic | 35.0% | |
| TTGTTCAGATTCTCAGTTGA+TGG | + | chr4_1:86767729-86767748 | Msa0581390:intron | 35.0% | |
| GAGTTCTTGAACTCTCTAAT+GGG | - | chr4_1:86767759-86767778 | None:intergenic | 35.0% | |
| TGAGTTCTTGAACTCTCTAA+TGG | - | chr4_1:86767760-86767779 | None:intergenic | 35.0% | |
| TTCAAGAACTCAGAGACTAT+TGG | + | chr4_1:86767768-86767787 | Msa0581390:CDS | 35.0% | |
| TTTGTGGAATGCAGATAACT+GGG | + | chr4_1:86767833-86767852 | Msa0581390:CDS | 35.0% | |
| !! | TTCAACTAGTTCTGCATCAA+AGG | + | chr4_1:86767968-86767987 | Msa0581390:CDS | 35.0% |
| AGATACAAAACGATTTCCAC+AGG | + | chr4_1:86768091-86768110 | Msa0581390:CDS | 35.0% | |
| GATACAAAACGATTTCCACA+GGG | + | chr4_1:86768092-86768111 | Msa0581390:CDS | 35.0% | |
| AATGGGGAAATATTACAGAG+GGG | - | chr4_1:86768164-86768183 | None:intergenic | 35.0% | |
| ! | TTTTGATCTCTGTCATCACT+AGG | + | chr4_1:86768235-86768254 | Msa0581390:three_prime_UTR | 35.0% |
| !! | CAAAGGCATTCATTACCATT+AGG | - | chr4_1:86767103-86767122 | None:intergenic | 35.0% |
| CCCATGTTATATCAAAGTGT+TGG | - | chr4_1:86767142-86767161 | None:intergenic | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | + | chr4_1:86767146-86767165 | Msa0581390:CDS | 35.0% | |
| CGAGCAAAGATACTAAACAA+TGG | + | chr4_1:86767170-86767189 | Msa0581390:CDS | 35.0% | |
| ACATTAGTGTGAAGGATGTA+TGG | - | chr4_1:86767512-86767531 | None:intergenic | 35.0% | |
| GGGAACAACAATTCTATCTA+TGG | + | chr4_1:86767555-86767574 | Msa0581390:CDS | 35.0% | |
| AAGTGTGAAAATCAGCTGTT+GGG | - | chr4_1:86767586-86767605 | None:intergenic | 35.0% | |
| TAAGTGTGAAAATCAGCTGT+TGG | - | chr4_1:86767587-86767606 | None:intergenic | 35.0% | |
| AAACTTACATAATCCTCTGG+GGG | - | chr4_1:86767625-86767644 | None:intergenic | 35.0% | |
| GAAACTTACATAATCCTCTG+GGG | - | chr4_1:86767626-86767645 | None:intergenic | 35.0% | |
| GAGAAACTTACATAATCCTC+TGG | - | chr4_1:86767628-86767647 | None:intergenic | 35.0% | |
| ATGTAGAATAAGGAAACACG+GGG | - | chr4_1:86767660-86767679 | None:intergenic | 35.0% | |
| GATGTAGAATAAGGAAACAC+GGG | - | chr4_1:86767661-86767680 | None:intergenic | 35.0% | |
| TATAAGTCTATATGCCTGCA+GGG | - | chr4_1:86767691-86767710 | None:intergenic | 35.0% | |
| ATATAAGTCTATATGCCTGC+AGG | - | chr4_1:86767692-86767711 | None:intergenic | 35.0% | |
| TTGTTCAGATTCTCAGTTGA+TGG | + | chr4_1:86767729-86767748 | Msa0581390:intron | 35.0% | |
| GAGTTCTTGAACTCTCTAAT+GGG | - | chr4_1:86767759-86767778 | None:intergenic | 35.0% | |
| TGAGTTCTTGAACTCTCTAA+TGG | - | chr4_1:86767760-86767779 | None:intergenic | 35.0% | |
| TTCAAGAACTCAGAGACTAT+TGG | + | chr4_1:86767768-86767787 | Msa0581390:CDS | 35.0% | |
| TTTGTGGAATGCAGATAACT+GGG | + | chr4_1:86767833-86767852 | Msa0581390:CDS | 35.0% | |
| !! | TTCAACTAGTTCTGCATCAA+AGG | + | chr4_1:86767968-86767987 | Msa0581390:CDS | 35.0% |
| AGATACAAAACGATTTCCAC+AGG | + | chr4_1:86768091-86768110 | Msa0581390:CDS | 35.0% | |
| GATACAAAACGATTTCCACA+GGG | + | chr4_1:86768092-86768111 | Msa0581390:CDS | 35.0% | |
| AATGGGGAAATATTACAGAG+GGG | - | chr4_1:86768164-86768183 | None:intergenic | 35.0% | |
| ! | TTTTGATCTCTGTCATCACT+AGG | + | chr4_1:86768235-86768254 | Msa0581390:three_prime_UTR | 35.0% |
| ATTAGGGAGCTAACAAGAAG+AGG | - | chr4_1:86767086-86767105 | None:intergenic | 40.0% | |
| TCTTCTTGTTAGCTCCCTAA+TGG | + | chr4_1:86767085-86767104 | Msa0581390:CDS | 40.0% | |
| ! | CTATCACTTGACAAAGCATC+TGG | + | chr4_1:86767206-86767225 | Msa0581390:CDS | 40.0% |
| GGCTGAAAACATTAGTGTGA+AGG | - | chr4_1:86767520-86767539 | None:intergenic | 40.0% | |
| ! | CACACTAATGTTTTCAGCCA+AGG | + | chr4_1:86767521-86767540 | Msa0581390:CDS | 40.0% |
| ! | AATGTTTTCAGCCAAGGCAA+AGG | + | chr4_1:86767527-86767546 | Msa0581390:CDS | 40.0% |
| CTACATCTTAAATACCCTGC+AGG | + | chr4_1:86767674-86767693 | Msa0581390:intron | 40.0% | |
| ! | TTCTCATTGGTTGGCTCTTT+GGG | - | chr4_1:86767803-86767822 | None:intergenic | 40.0% |
| ! | ATTCTCATTGGTTGGCTCTT+TGG | - | chr4_1:86767804-86767823 | None:intergenic | 40.0% |
| GTTTGTGGAATGCAGATAAC+TGG | + | chr4_1:86767832-86767851 | Msa0581390:CDS | 40.0% | |
| AGTCAAGACAGATTGGACAA+AGG | + | chr4_1:86767872-86767891 | Msa0581390:CDS | 40.0% | |
| TTTCTGTAGGAAGCTGTGAA+TGG | - | chr4_1:86767900-86767919 | None:intergenic | 40.0% | |
| TTCATGGCTTTCACATGAGT+TGG | + | chr4_1:86768004-86768023 | Msa0581390:CDS | 40.0% | |
| !! | TTTTAAGAGTGGTTGCACTC+TGG | - | chr4_1:86768125-86768144 | None:intergenic | 40.0% |
| ATTAGGGAGCTAACAAGAAG+AGG | - | chr4_1:86767086-86767105 | None:intergenic | 40.0% | |
| TCTTCTTGTTAGCTCCCTAA+TGG | + | chr4_1:86767085-86767104 | Msa0581390:CDS | 40.0% | |
| ! | CTATCACTTGACAAAGCATC+TGG | + | chr4_1:86767206-86767225 | Msa0581390:CDS | 40.0% |
| GGCTGAAAACATTAGTGTGA+AGG | - | chr4_1:86767520-86767539 | None:intergenic | 40.0% | |
| ! | CACACTAATGTTTTCAGCCA+AGG | + | chr4_1:86767521-86767540 | Msa0581390:CDS | 40.0% |
| ! | AATGTTTTCAGCCAAGGCAA+AGG | + | chr4_1:86767527-86767546 | Msa0581390:CDS | 40.0% |
| CTACATCTTAAATACCCTGC+AGG | + | chr4_1:86767674-86767693 | Msa0581390:intron | 40.0% | |
| ! | TTCTCATTGGTTGGCTCTTT+GGG | - | chr4_1:86767803-86767822 | None:intergenic | 40.0% |
| ! | ATTCTCATTGGTTGGCTCTT+TGG | - | chr4_1:86767804-86767823 | None:intergenic | 40.0% |
| GTTTGTGGAATGCAGATAAC+TGG | + | chr4_1:86767832-86767851 | Msa0581390:CDS | 40.0% | |
| AGTCAAGACAGATTGGACAA+AGG | + | chr4_1:86767872-86767891 | Msa0581390:CDS | 40.0% | |
| TTTCTGTAGGAAGCTGTGAA+TGG | - | chr4_1:86767900-86767919 | None:intergenic | 40.0% | |
| TTCATGGCTTTCACATGAGT+TGG | + | chr4_1:86768004-86768023 | Msa0581390:CDS | 40.0% | |
| !! | TTTTAAGAGTGGTTGCACTC+TGG | - | chr4_1:86768125-86768144 | None:intergenic | 40.0% |
| GTAATGAATGCCTTTGCTGC+TGG | + | chr4_1:86767107-86767126 | Msa0581390:CDS | 45.0% | |
| ! | GTTCAAGTTACCAGCAGCAA+AGG | - | chr4_1:86767120-86767139 | None:intergenic | 45.0% |
| ! | CTTGACAAAGCATCTGGTTC+AGG | + | chr4_1:86767212-86767231 | Msa0581390:CDS | 45.0% |
| TCAGCCAAGGCAAAGGAAAT+AGG | + | chr4_1:86767534-86767553 | Msa0581390:CDS | 45.0% | |
| CAGCCAAGGCAAAGGAAATA+GGG | + | chr4_1:86767535-86767554 | Msa0581390:CDS | 45.0% | |
| GTTCCCTATTTCCTTTGCCT+TGG | - | chr4_1:86767541-86767560 | None:intergenic | 45.0% | |
| ! | ATTGGTTGGCTCTTTGGGAA+GGG | - | chr4_1:86767798-86767817 | None:intergenic | 45.0% |
| !! | GTGGACTAGTCAAGACAGAT+TGG | + | chr4_1:86767865-86767884 | Msa0581390:CDS | 45.0% |
| TTAATGCTCAGGCTTGCATC+TGG | + | chr4_1:86767922-86767941 | Msa0581390:CDS | 45.0% | |
| TGCAGAACTAGTTGAACCAC+AGG | - | chr4_1:86767964-86767983 | None:intergenic | 45.0% | |
| ATGTGAAAGCCATGAACCTC+TGG | - | chr4_1:86768000-86768019 | None:intergenic | 45.0% | |
| ! | TCACATGAGTTGGATGCTAC+TGG | + | chr4_1:86768014-86768033 | Msa0581390:CDS | 45.0% |
| AGTTGGATGCTACTGGTCAA+GGG | + | chr4_1:86768021-86768040 | Msa0581390:CDS | 45.0% | |
| TGGTCAAGGGAGGTTGAAAT+GGG | + | chr4_1:86768034-86768053 | Msa0581390:CDS | 45.0% | |
| GTAATGAATGCCTTTGCTGC+TGG | + | chr4_1:86767107-86767126 | Msa0581390:CDS | 45.0% | |
| ! | GTTCAAGTTACCAGCAGCAA+AGG | - | chr4_1:86767120-86767139 | None:intergenic | 45.0% |
| ! | CTTGACAAAGCATCTGGTTC+AGG | + | chr4_1:86767212-86767231 | Msa0581390:CDS | 45.0% |
| TCAGCCAAGGCAAAGGAAAT+AGG | + | chr4_1:86767534-86767553 | Msa0581390:CDS | 45.0% | |
| CAGCCAAGGCAAAGGAAATA+GGG | + | chr4_1:86767535-86767554 | Msa0581390:CDS | 45.0% | |
| GTTCCCTATTTCCTTTGCCT+TGG | - | chr4_1:86767541-86767560 | None:intergenic | 45.0% | |
| ! | ATTGGTTGGCTCTTTGGGAA+GGG | - | chr4_1:86767798-86767817 | None:intergenic | 45.0% |
| !! | GTGGACTAGTCAAGACAGAT+TGG | + | chr4_1:86767865-86767884 | Msa0581390:CDS | 45.0% |
| TTAATGCTCAGGCTTGCATC+TGG | + | chr4_1:86767922-86767941 | Msa0581390:CDS | 45.0% | |
| TGCAGAACTAGTTGAACCAC+AGG | - | chr4_1:86767964-86767983 | None:intergenic | 45.0% | |
| ATGTGAAAGCCATGAACCTC+TGG | - | chr4_1:86768000-86768019 | None:intergenic | 45.0% | |
| ! | TCACATGAGTTGGATGCTAC+TGG | + | chr4_1:86768014-86768033 | Msa0581390:CDS | 45.0% |
| AGTTGGATGCTACTGGTCAA+GGG | + | chr4_1:86768021-86768040 | Msa0581390:CDS | 45.0% | |
| TGGTCAAGGGAGGTTGAAAT+GGG | + | chr4_1:86768034-86768053 | Msa0581390:CDS | 45.0% | |
| ATGCAGCTCAAACTTGTCCC+TGG | + | chr4_1:86767275-86767294 | Msa0581390:CDS | 50.0% | |
| CTATCATATGGAACCCCCAG+AGG | + | chr4_1:86767609-86767628 | Msa0581390:CDS | 50.0% | |
| ! | CATTGGTTGGCTCTTTGGGA+AGG | - | chr4_1:86767799-86767818 | None:intergenic | 50.0% |
| GCAGATAACTGGGCAACAAG+AGG | + | chr4_1:86767843-86767862 | Msa0581390:CDS | 50.0% | |
| GATAACTGGGCAACAAGAGG+TGG | + | chr4_1:86767846-86767865 | Msa0581390:CDS | 50.0% | |
| !! | TCTTCTGGAGCATCATCCTG+TGG | + | chr4_1:86767945-86767964 | Msa0581390:CDS | 50.0% |
| GAGTTGGATGCTACTGGTCA+AGG | + | chr4_1:86768020-86768039 | Msa0581390:CDS | 50.0% | |
| CTGGTCAAGGGAGGTTGAAA+TGG | + | chr4_1:86768033-86768052 | Msa0581390:CDS | 50.0% | |
| TAAGAGTGGTTGCACTCTGG+AGG | - | chr4_1:86768122-86768141 | None:intergenic | 50.0% | |
| ATGCAGCTCAAACTTGTCCC+TGG | + | chr4_1:86767275-86767294 | Msa0581390:CDS | 50.0% | |
| CTATCATATGGAACCCCCAG+AGG | + | chr4_1:86767609-86767628 | Msa0581390:CDS | 50.0% | |
| ! | CATTGGTTGGCTCTTTGGGA+AGG | - | chr4_1:86767799-86767818 | None:intergenic | 50.0% |
| GCAGATAACTGGGCAACAAG+AGG | + | chr4_1:86767843-86767862 | Msa0581390:CDS | 50.0% | |
| GATAACTGGGCAACAAGAGG+TGG | + | chr4_1:86767846-86767865 | Msa0581390:CDS | 50.0% | |
| !! | TCTTCTGGAGCATCATCCTG+TGG | + | chr4_1:86767945-86767964 | Msa0581390:CDS | 50.0% |
| GAGTTGGATGCTACTGGTCA+AGG | + | chr4_1:86768020-86768039 | Msa0581390:CDS | 50.0% | |
| CTGGTCAAGGGAGGTTGAAA+TGG | + | chr4_1:86768033-86768052 | Msa0581390:CDS | 50.0% | |
| TAAGAGTGGTTGCACTCTGG+AGG | - | chr4_1:86768122-86768141 | None:intergenic | 50.0% | |
| CTTGTCCCTGGAAACTCTGC+TGG | + | chr4_1:86767287-86767306 | Msa0581390:CDS | 55.0% | |
| CAGTGCCAGCAGAGTTTCCA+GGG | - | chr4_1:86767295-86767314 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTTCC+AGG | - | chr4_1:86767296-86767315 | None:intergenic | 55.0% | |
| ! | CAGGCTTGCATCTGGTCTTC+TGG | + | chr4_1:86767930-86767949 | Msa0581390:CDS | 55.0% |
| GCATCAAAGGACTCTGCCAG+AGG | + | chr4_1:86767981-86768000 | Msa0581390:CDS | 55.0% | |
| AGGACTCTGCCAGAGGTTCA+TGG | + | chr4_1:86767988-86768007 | Msa0581390:CDS | 55.0% | |
| TGGATGCTACTGGTCAAGGG+AGG | + | chr4_1:86768024-86768043 | Msa0581390:CDS | 55.0% | |
| ! | CACTCTGGAGGTAAACCCTG+TGG | - | chr4_1:86768110-86768129 | None:intergenic | 55.0% |
| CTTGTCCCTGGAAACTCTGC+TGG | + | chr4_1:86767287-86767306 | Msa0581390:CDS | 55.0% | |
| CAGTGCCAGCAGAGTTTCCA+GGG | - | chr4_1:86767295-86767314 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTTCC+AGG | - | chr4_1:86767296-86767315 | None:intergenic | 55.0% | |
| ! | CAGGCTTGCATCTGGTCTTC+TGG | + | chr4_1:86767930-86767949 | Msa0581390:CDS | 55.0% |
| GCATCAAAGGACTCTGCCAG+AGG | + | chr4_1:86767981-86768000 | Msa0581390:CDS | 55.0% | |
| AGGACTCTGCCAGAGGTTCA+TGG | + | chr4_1:86767988-86768007 | Msa0581390:CDS | 55.0% | |
| TGGATGCTACTGGTCAAGGG+AGG | + | chr4_1:86768024-86768043 | Msa0581390:CDS | 55.0% | |
| ! | CACTCTGGAGGTAAACCCTG+TGG | - | chr4_1:86768110-86768129 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86767044 | 86768308 | 86767044 | ID=Msa0581390;Name=Msa0581390 |
| chr4_1 | mRNA | 86767044 | 86768308 | 86767044 | ID=Msa0581390-mRNA-1;Parent=Msa0581390;Name=Msa0581390-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.5|0.66|1|1|1|3|166|299 |
| chr4_1 | exon | 86767044 | 86767343 | 86767044 | ID=Msa0581390-mRNA-1:exon:32102;Parent=Msa0581390-mRNA-1 |
| chr4_1 | exon | 86767443 | 86767636 | 86767443 | ID=Msa0581390-mRNA-1:exon:32103;Parent=Msa0581390-mRNA-1 |
| chr4_1 | exon | 86767737 | 86768308 | 86767737 | ID=Msa0581390-mRNA-1:exon:32104;Parent=Msa0581390-mRNA-1 |
| chr4_1 | CDS | 86767044 | 86767343 | 86767044 | ID=Msa0581390-mRNA-1:cds;Parent=Msa0581390-mRNA-1 |
| chr4_1 | CDS | 86767443 | 86767636 | 86767443 | ID=Msa0581390-mRNA-1:cds;Parent=Msa0581390-mRNA-1 |
| chr4_1 | CDS | 86767737 | 86768142 | 86767737 | ID=Msa0581390-mRNA-1:cds;Parent=Msa0581390-mRNA-1 |
| chr4_1 | three_prime_UTR | 86768143 | 86768308 | 86768143 | ID=Msa0581390-mRNA-1:three_prime_utr;Parent=Msa0581390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
