AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337540 MtrunA17_Chr4g0072751 97.429 350 8 1 1 349 1 350 0.0 692
Msa1337540 MtrunA17_Chr5g0400821 87.313 134 17 0 1 134 1 134 1.71e-84 258
Msa1337540 MtrunA17_Chr1g0152011 72.832 173 39 1 1 165 1 173 6.55e-84 258
Msa1337540 MtrunA17_Chr3g0135311 68.156 179 49 3 1 173 1 177 2.77e-80 248
Msa1337540 MtrunA17_Chr4g0028311 83.193 119 20 0 1 119 1 119 4.27e-73 229
Msa1337540 MtrunA17_Chr4g0054391 88.182 110 13 0 1 110 1 110 2.89e-71 223
Msa1337540 MtrunA17_Chr2g0327351 57.944 214 80 3 1 209 1 209 1.06e-70 223
Msa1337540 MtrunA17_Chr7g0264641 79.661 118 24 0 1 118 1 118 1.55e-70 221
Msa1337540 MtrunA17_Chr1g0151941 80.508 118 23 0 1 118 1 118 6.13e-70 219
Msa1337540 MtrunA17_Chr6g0487491 71.654 127 28 1 1 119 1 127 6.60e-63 201
Msa1337540 MtrunA17_Chr6g0452271 64.407 118 41 1 1 118 1 117 1.32e-53 179
Msa1337540 MtrunA17_Chr7g0217221 53.659 164 64 4 1 164 1 152 3.59e-52 174
Msa1337540 MtrunA17_Chr3g0103281 63.866 119 42 1 1 119 1 118 8.99e-51 172
Msa1337540 MtrunA17_Chr4g0039971 63.559 118 42 1 1 118 2 118 1.35e-50 172
Msa1337540 MtrunA17_Chr4g0060721 49.451 182 76 6 1 179 2 170 6.53e-50 170
Msa1337540 MtrunA17_Chr5g0410961 49.457 184 81 5 1 175 1 181 9.97e-50 169
Msa1337540 MtrunA17_Chr7g0261281 57.353 136 56 2 1 136 1 134 1.50e-49 167
Msa1337540 MtrunA17_Chr1g0203411 62.393 117 43 1 1 117 1 116 1.56e-49 167
Msa1337540 MtrunA17_Chr8g0346561 61.538 117 44 1 1 117 1 116 2.20e-49 167
Msa1337540 MtrunA17_Chr3g0115821 61.017 118 45 1 1 118 1 117 2.49e-49 168
Msa1337540 MtrunA17_Chr6g0453471 62.393 117 43 1 1 117 1 116 3.54e-49 168
Msa1337540 MtrunA17_Chr1g0187761 64.957 117 40 1 1 117 1 116 4.56e-49 165
Msa1337540 MtrunA17_Chr7g0275911 60.684 117 45 1 1 117 1 116 6.26e-49 165
Msa1337540 MtrunA17_Chr4g0037141 49.697 165 63 3 1 163 1 147 6.75e-49 166
Msa1337540 MtrunA17_Chr4g0042671 45.894 207 90 5 1 186 1 206 7.21e-49 169
Msa1337540 MtrunA17_Chr1g0167691 62.712 118 43 1 1 118 1 117 1.15e-48 164
Msa1337540 MtrunA17_Chr7g0217741 62.393 117 43 1 1 117 1 116 1.26e-48 166
Msa1337540 MtrunA17_Chr2g0323411 62.712 118 43 1 1 118 1 117 2.36e-48 165
Msa1337540 MtrunA17_Chr1g0167661 51.299 154 72 2 1 152 1 153 2.78e-48 163
Msa1337540 MtrunA17_Chr7g0274581 46.893 177 83 4 1 173 1 170 3.39e-48 161
Msa1337540 MtrunA17_Chr8g0349261 60.504 119 46 1 1 118 1 119 5.98e-48 163
Msa1337540 MtrunA17_Chr3g0092401 48.876 178 77 5 1 176 2 167 2.46e-47 162
Msa1337540 MtrunA17_Chr3g0131121 58.333 120 49 1 1 120 1 119 5.75e-47 161
Msa1337540 MtrunA17_Chr7g0254411 61.538 117 44 1 1 117 1 116 7.68e-47 162
Msa1337540 MtrunA17_Chr4g0048511 60.504 119 45 2 1 118 1 118 1.34e-46 162
Msa1337540 MtrunA17_Chr4g0057031 60.169 118 46 1 1 118 1 117 1.78e-46 159
Msa1337540 MtrunA17_Chr2g0281071 60.504 119 45 2 1 118 1 118 2.01e-46 161
Msa1337540 MtrunA17_Chr6g0453211 51.744 172 72 4 1 169 1 164 3.90e-46 159
Msa1337540 MtrunA17_Chr7g0228891 58.974 117 47 1 1 117 1 116 5.22e-46 157
Msa1337540 MtrunA17_Chr4g0070611 52.985 134 62 1 1 134 1 133 6.54e-46 158
Msa1337540 MtrunA17_Chr8g0385321 59.167 120 48 1 1 120 1 119 1.02e-45 158
Msa1337540 MtrunA17_Chr4g0070641 52.985 134 62 1 1 134 1 133 1.76e-45 153
Msa1337540 MtrunA17_Chr5g0395281 46.995 183 87 4 1 175 1 181 5.02e-45 156
Msa1337540 MtrunA17_Chr4g0058631 58.475 118 48 1 1 118 1 117 7.46e-45 157
Msa1337540 MtrunA17_Chr4g0068061 57.265 117 49 1 1 117 1 116 7.60e-45 156
Msa1337540 MtrunA17_Chr8g0387421 58.120 117 48 1 1 117 1 116 1.17e-44 155
Msa1337540 MtrunA17_Chr5g0435101 52.800 125 58 1 3 127 2 125 1.39e-44 152
Msa1337540 MtrunA17_Chr1g0193371 58.974 117 47 1 1 117 1 116 1.51e-44 156
Msa1337540 MtrunA17_Chr3g0110351 58.974 117 47 1 1 117 1 116 1.75e-44 155
Msa1337540 MtrunA17_Chr1g0193801 58.333 120 49 1 1 120 1 119 2.28e-44 156
Msa1337540 MtrunA17_Chr2g0323351 52.555 137 62 2 1 137 1 134 2.42e-44 152
Msa1337540 MtrunA17_Chr2g0311221 59.459 111 44 1 2 112 4 113 4.13e-44 154
Msa1337540 MtrunA17_Chr5g0434571 58.974 117 47 1 1 117 37 152 4.42e-44 155
Msa1337540 MtrunA17_Chr7g0270891 59.167 120 48 1 1 120 1 119 4.73e-44 155
Msa1337540 MtrunA17_Chr3g0121241 56.140 114 49 1 5 118 35 147 1.37e-43 152
Msa1337540 MtrunA17_Chr4g0022931 57.627 118 48 2 1 117 1 117 1.75e-43 151
Msa1337540 MtrunA17_Chr3g0117091 56.780 118 50 1 1 118 1 117 2.03e-43 153
Msa1337540 MtrunA17_Chr5g0397231 59.459 111 44 1 1 111 1 110 7.10e-43 151
Msa1337540 MtrunA17_Chr4g0022901 56.303 119 50 2 1 118 1 118 1.23e-42 149
Msa1337540 MtrunA17_Chr8g0342541 55.085 118 52 1 1 118 1 117 3.52e-42 150
Msa1337540 MtrunA17_Chr2g0330041 55.000 120 53 1 1 120 1 119 3.97e-42 151
Msa1337540 MtrunA17_Chr4g0022891 58.772 114 46 1 1 114 1 113 4.24e-42 146
Msa1337540 MtrunA17_Chr1g0211161 55.172 116 51 1 3 118 4 118 8.18e-42 145
Msa1337540 MtrunA17_Chr8g0342521 55.085 118 52 1 1 118 1 117 1.43e-41 148
Msa1337540 MtrunA17_Chr1g0194951 53.846 117 53 1 1 117 1 116 1.48e-41 149
Msa1337540 MtrunA17_Chr8g0342481 52.941 119 56 0 1 119 1 119 1.79e-41 149
Msa1337540 MtrunA17_Chr2g0309911 54.783 115 51 1 6 120 5 118 2.24e-41 147
Msa1337540 MtrunA17_Chr7g0269831 55.039 129 57 1 1 129 1 128 2.73e-41 147
Msa1337540 MtrunA17_Chr7g0271241 60.000 110 43 1 1 110 1 109 3.14e-41 148
Msa1337540 MtrunA17_Chr4g0022911 53.782 119 53 2 1 118 1 118 8.39e-41 144
Msa1337540 MtrunA17_Chr4g0022881 55.652 115 50 1 1 115 1 114 2.24e-39 139
Msa1337540 MtrunA17_Chr4g0044421 50.376 133 62 3 3 134 2 131 4.61e-39 137
Msa1337540 MtrunA17_Chr8g0354661 58.095 105 43 1 12 116 37 140 2.45e-38 143
Msa1337540 MtrunA17_Chr3g0099131 56.075 107 46 1 10 116 39 144 3.47e-37 140
Msa1337540 MtrunA17_Chr3g0088461 55.046 109 48 1 9 117 19 126 4.47e-37 136
Msa1337540 MtrunA17_Chr3g0080861 57.143 105 44 1 12 116 37 140 5.35e-37 139
Msa1337540 MtrunA17_Chr5g0434931 55.046 109 48 1 12 120 35 142 1.17e-36 133
Msa1337540 MtrunA17_Chr2g0328771 54.717 106 47 1 12 117 20 124 1.78e-36 134
Msa1337540 MtrunA17_Chr1g0203441 52.542 118 54 2 1 117 1 117 2.10e-36 132
Msa1337540 MtrunA17_Chr8g0343831 54.701 117 48 2 1 117 1 112 2.51e-36 132
Msa1337540 MtrunA17_Chr5g0417821 54.206 107 48 1 12 118 7 112 3.18e-36 132
Msa1337540 MtrunA17_Chr5g0434911 51.754 114 54 1 7 120 16 128 1.11e-35 130
Msa1337540 MtrunA17_Chr4g0032401 54.717 106 47 1 12 117 17 121 1.13e-35 132
Msa1337540 MtrunA17_Chr6g0450101 52.101 119 54 2 1 117 1 118 1.18e-35 129
Msa1337540 MtrunA17_Chr7g0228231 53.846 117 49 2 11 127 13 124 1.48e-35 128
Msa1337540 MtrunA17_Chr1g0194301 55.046 109 48 1 8 116 29 136 1.81e-35 130
Msa1337540 MtrunA17_Chr6g0470971 53.097 113 52 1 4 116 6 117 5.05e-35 129
Msa1337540 MtrunA17_Chr7g0240821 59.406 101 40 1 17 117 6 105 9.13e-35 127
Msa1337540 MtrunA17_Chr5g0440781 53.271 107 48 2 10 115 10 115 2.01e-34 125
Msa1337540 MtrunA17_Chr7g0228991 54.128 109 49 1 12 120 29 136 2.13e-34 127
Msa1337540 MtrunA17_Chr7g0220341 53.509 114 50 2 12 123 25 137 2.80e-34 127
Msa1337540 MtrunA17_Chr4g0055981 53.704 108 49 1 9 116 52 158 3.00e-34 125
Msa1337540 MtrunA17_Chr1g0186061 54.808 104 46 1 13 116 21 123 4.39e-34 126
Msa1337540 MtrunA17_Chr1g0168661 55.769 104 45 1 13 116 22 124 4.54e-34 126
Msa1337540 MtrunA17_Chr1g0209661 55.238 105 46 1 12 116 27 130 4.81e-34 127
Msa1337540 MtrunA17_Chr1g0192411 52.294 109 51 1 8 116 8 115 1.47e-33 128
Msa1337540 MtrunA17_Chr2g0322521 54.630 108 48 1 9 116 26 132 1.59e-33 128
Msa1337540 MtrunA17_Chr1g0194291 53.704 108 49 1 9 116 18 124 1.66e-33 124
Msa1337540 MtrunA17_Chr5g0440761 53.271 107 48 2 10 115 10 115 1.73e-33 124
Msa1337540 MtrunA17_Chr5g0441141 53.271 107 48 2 10 115 10 115 1.81e-33 125
Msa1337540 MtrunA17_Chr8g0360111 56.863 102 43 1 12 113 25 125 2.68e-33 124
Msa1337540 MtrunA17_Chr4g0042611 58.427 89 36 1 1 89 1 88 3.67e-33 118
Msa1337540 MtrunA17_Chr1g0180391 53.704 108 49 1 10 117 17 123 3.81e-33 123
Msa1337540 MtrunA17_Chr4g0068921 55.556 108 47 1 8 115 20 126 1.10e-32 120
Msa1337540 MtrunA17_Chr1g0154031 51.429 105 50 1 12 116 76 179 2.91e-32 124
Msa1337540 MtrunA17_Chr5g0434841 51.376 109 52 1 12 120 20 127 3.47e-32 122
Msa1337540 MtrunA17_Chr5g0434831 50.459 109 53 1 12 120 7 114 4.33e-32 119
Msa1337540 MtrunA17_Chr2g0327821 40.268 149 86 2 12 158 6 153 1.08e-31 119
Msa1337540 MtrunA17_Chr5g0441131 51.402 107 50 2 10 115 7 112 1.20e-31 117
Msa1337540 MtrunA17_Chr7g0247131 66.667 72 24 0 46 117 11 82 3.55e-30 116
Msa1337540 MtrunA17_Chr2g0293911 53.704 108 49 1 8 115 20 126 5.07e-30 117
Msa1337540 MtrunA17_Chr2g0294811 53.763 93 42 1 1 93 1 92 7.60e-30 110
Msa1337540 MtrunA17_Chr8g0334881 48.624 109 54 2 8 115 6 113 2.52e-28 112
Msa1337540 MtrunA17_Chr3g0099141 53.409 88 40 1 8 95 36 122 7.99e-28 106
Msa1337540 MtrunA17_Chr4g0030881 43.697 119 59 2 13 124 8 125 9.96e-28 109
Msa1337540 MtrunA17_Chr4g0008551 48.214 112 56 2 14 125 38 147 1.85e-27 110
Msa1337540 MtrunA17_Chr5g0401731 50.485 103 49 2 14 116 15 115 2.95e-27 109
Msa1337540 MtrunA17_Chr8g0342461 51.111 90 44 0 1 90 1 90 8.62e-27 103
Msa1337540 MtrunA17_Chr4g0053431 50.485 103 49 2 14 116 5 105 8.96e-27 107
Msa1337540 MtrunA17_Chr8g0342511 52.874 87 40 1 1 87 1 86 9.36e-27 102
Msa1337540 MtrunA17_Chr8g0342471 51.111 90 44 0 1 90 1 90 1.18e-26 103
Msa1337540 MtrunA17_Chr6g0454921 49.515 103 50 2 14 116 15 115 2.39e-26 104
Msa1337540 MtrunA17_Chr4g0013361 45.872 109 57 2 8 115 6 113 5.39e-26 105
Msa1337540 MtrunA17_Chr8g0342531 51.111 90 43 1 1 90 1 89 5.43e-26 102
Msa1337540 MtrunA17_Chr3g0133601 47.573 103 52 2 14 116 37 137 2.90e-25 101
Msa1337540 MtrunA17_Chr5g0434901 62.857 70 26 0 45 114 5 74 9.60e-25 97.1
Msa1337540 MtrunA17_Chr2g0323321 47.312 93 47 2 1 93 1 91 3.55e-24 95.5
Msa1337540 MtrunA17_Chr3g0093811 56.627 83 33 1 38 117 4 86 5.39e-24 99.4
Msa1337540 MtrunA17_Chr5g0395221 49.438 89 44 1 1 89 1 88 1.03e-23 93.6
Msa1337540 MtrunA17_Chr6g0480581 27.039 233 148 6 14 246 4 214 4.26e-23 96.3
Msa1337540 MtrunA17_Chr7g0229101 57.971 69 29 0 46 114 5 73 3.88e-22 92.8
Msa1337540 MtrunA17_Chr5g0429661 39.535 129 75 3 14 142 122 247 4.07e-22 95.9
Msa1337540 MtrunA17_Chr7g0229131 53.425 73 34 0 46 118 5 77 6.73e-22 91.3
Msa1337540 MtrunA17_Chr5g0437321 48.000 100 50 2 14 113 19 116 8.08e-22 94.0
Msa1337540 MtrunA17_Chr4g0058991 43.363 113 61 3 9 121 204 313 2.59e-21 94.7
Msa1337540 MtrunA17_Chr5g0417621 41.964 112 60 3 14 125 134 240 6.12e-21 93.2
Msa1337540 MtrunA17_Chr3g0117511 42.982 114 62 3 9 122 178 288 7.97e-21 93.2
Msa1337540 MtrunA17_Chr6g0460661 39.815 108 60 3 14 118 16 121 6.11e-20 85.5
Msa1337540 MtrunA17_Chr3g0125801 37.342 158 82 5 8 150 10 165 6.46e-20 88.6
Msa1337540 MtrunA17_Chr7g0238651 36.957 138 76 4 17 152 10 138 7.77e-20 89.4
Msa1337540 MtrunA17_Chr5g0425591 48.276 87 43 2 11 96 8 93 1.10e-19 82.8
Msa1337540 MtrunA17_Chr4g0042501 34.615 130 81 3 14 143 105 230 2.51e-19 88.6
Msa1337540 MtrunA17_Chr3g0139671 43.269 104 57 2 14 117 85 186 4.36e-19 88.6
Msa1337540 MtrunA17_Chr7g0238631 42.748 131 62 4 14 136 113 238 6.35e-19 87.8
Msa1337540 MtrunA17_Chr6g0453751 41.935 93 46 2 12 96 20 112 1.14e-18 81.3
Msa1337540 MtrunA17_Chr6g0460671 40.777 103 59 2 14 116 99 199 4.08e-18 84.3
Msa1337540 MtrunA17_Chr7g0228531 36.364 121 74 3 11 131 217 334 1.70e-17 83.2
Msa1337540 MtrunA17_Chr1g0157731 41.346 104 59 2 14 117 91 192 2.51e-17 83.6
Msa1337540 MtrunA17_Chr5g0397841 44.000 100 54 2 11 110 107 204 4.55e-17 82.0
Msa1337540 MtrunA17_Chr7g0254261 41.748 103 58 2 14 116 89 189 1.07e-16 80.1
Msa1337540 MtrunA17_Chr7g0228401 35.211 142 68 4 11 130 252 391 1.16e-16 80.9
Msa1337540 MtrunA17_Chr1g0177901 43.158 95 52 1 34 128 12 104 2.15e-16 77.0
Msa1337540 MtrunA17_Chr5g0416341 39.000 100 59 2 17 116 29 126 9.78e-16 78.2
Msa1337540 MtrunA17_Chr8g0362231 41.000 100 57 2 17 116 25 122 1.50e-15 77.4
Msa1337540 MtrunA17_Chr7g0233061 36.134 119 71 3 10 128 176 289 3.46e-15 75.9
Msa1337540 MtrunA17_Chr7g0228481 33.562 146 86 5 11 149 217 358 1.32e-14 74.3
Msa1337540 MtrunA17_Chr7g0247141 55.319 47 21 0 1 47 1 47 1.75e-14 67.4
Msa1337540 MtrunA17_Chr1g0193901 52.542 59 26 2 12 69 11 68 3.23e-13 65.5
Msa1337540 MtrunA17_Chr1g0193891 52.542 59 26 2 12 69 11 68 3.23e-13 65.5
Msa1337540 MtrunA17_Chr1g0193871 52.542 59 26 2 12 69 11 68 3.23e-13 65.5
Msa1337540 MtrunA17_Chr1g0193881 52.542 59 26 2 12 69 11 68 3.23e-13 65.5
Msa1337540 MtrunA17_Chr5g0434871 54.545 44 20 0 75 118 2 45 2.59e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337540 AT5G57620.1 63.900 241 74 4 1 239 1 230 1.42e-99 298
Msa1337540 AT3G49690.1 90.244 123 12 0 1 123 1 123 1.06e-81 251
Msa1337540 AT5G65790.1 89.431 123 13 0 1 123 1 123 2.34e-80 250
Msa1337540 AT4G37780.1 83.871 124 20 0 1 124 1 124 2.25e-76 237
Msa1337540 AT2G36890.1 84.034 119 19 0 1 119 1 119 7.02e-72 226
Msa1337540 AT2G36890.2 84.034 119 19 0 1 119 42 160 1.02e-71 226
Msa1337540 AT5G23000.1 78.814 118 25 0 1 118 1 118 1.16e-66 213
Msa1337540 AT5G56110.1 65.546 119 40 1 1 119 1 118 9.14e-53 177
Msa1337540 AT2G31180.1 58.741 143 52 2 1 143 1 136 4.09e-52 173
Msa1337540 AT3G01140.2 64.407 118 41 1 1 118 1 117 2.13e-51 174
Msa1337540 AT3G47600.1 50.000 192 87 5 1 184 1 191 5.32e-51 173
Msa1337540 AT5G15310.4 62.712 118 43 1 1 118 1 117 2.52e-50 168
Msa1337540 AT3G61250.1 62.712 118 43 1 1 118 1 117 4.17e-50 169
Msa1337540 AT3G23250.1 63.248 117 42 1 1 117 1 116 5.18e-50 169
Msa1337540 AT5G15310.1 62.712 118 43 1 1 118 1 117 8.72e-50 169
Msa1337540 AT5G15310.2 62.712 118 43 1 1 118 1 117 9.83e-50 169
Msa1337540 AT1G22640.1 57.143 133 55 2 1 133 1 131 2.29e-49 166
Msa1337540 AT5G62470.2 48.538 171 87 1 1 171 1 170 3.08e-49 169
Msa1337540 AT3G02940.2 61.017 118 45 1 1 118 1 117 3.44e-49 167
Msa1337540 AT1G74650.1 56.643 143 57 2 1 143 1 138 5.33e-49 167
Msa1337540 AT5G16770.4 62.712 118 43 1 1 118 1 117 5.45e-49 167
Msa1337540 AT5G16770.3 62.712 118 43 1 1 118 1 117 5.45e-49 167
Msa1337540 AT3G62610.1 56.818 132 56 1 1 132 1 131 8.11e-49 167
Msa1337540 AT3G02940.1 61.017 118 45 1 1 118 1 117 8.46e-49 167
Msa1337540 AT3G02940.3 61.017 118 45 1 1 118 1 117 8.46e-49 167
Msa1337540 AT5G16770.1 62.712 118 43 1 1 118 1 117 1.29e-48 167
Msa1337540 AT5G16770.2 62.712 118 43 1 1 118 1 117 1.29e-48 167
Msa1337540 AT2G16720.1 60.000 120 47 1 1 120 1 119 1.66e-48 164
Msa1337540 AT4G28110.1 61.017 118 45 1 1 118 1 117 3.62e-48 164
Msa1337540 AT4G21440.1 48.276 174 83 3 1 168 1 173 3.93e-48 166
Msa1337540 AT3G01140.1 63.478 115 41 1 4 118 47 160 4.45e-48 167
Msa1337540 AT4G05100.1 62.185 119 43 2 1 118 1 118 4.68e-48 165
Msa1337540 AT1G35515.1 52.555 137 64 1 1 137 1 136 4.93e-48 161
Msa1337540 AT1G79180.1 62.931 116 42 1 2 117 4 118 4.99e-48 164
Msa1337540 AT1G16490.1 61.207 116 44 1 2 117 4 118 5.06e-48 163
Msa1337540 AT1G06180.1 60.800 125 48 1 1 125 1 124 7.12e-48 162
Msa1337540 AT3G28910.1 64.103 117 41 1 1 117 1 116 8.00e-48 164
Msa1337540 AT4G38620.1 59.322 118 47 1 1 118 1 117 8.94e-48 163
Msa1337540 AT4G09460.1 60.169 118 46 1 1 118 1 117 9.83e-48 161
Msa1337540 AT1G08810.1 62.393 117 43 1 1 117 1 116 1.41e-47 162
Msa1337540 AT5G62470.1 48.538 171 86 2 1 171 1 169 3.33e-47 163
Msa1337540 AT4G34990.1 60.000 120 47 1 1 120 1 119 3.87e-47 161
Msa1337540 AT5G49330.1 50.658 152 67 2 1 152 1 144 5.51e-47 162
Msa1337540 AT4G17785.2 61.345 119 44 2 1 118 1 118 9.33e-47 162
Msa1337540 AT4G17785.1 61.345 119 44 2 1 118 1 118 1.56e-46 162
Msa1337540 AT1G56160.1 59.483 116 46 1 2 117 4 118 1.81e-46 160
Msa1337540 AT3G28470.1 61.261 111 42 1 1 111 1 110 1.84e-46 160
Msa1337540 AT4G12350.1 61.017 118 45 1 1 118 1 117 2.47e-46 159
Msa1337540 AT5G61420.2 61.017 118 45 1 1 118 1 117 2.53e-46 161
Msa1337540 AT5G07690.1 60.833 120 46 1 1 120 1 119 3.40e-46 160
Msa1337540 AT1G34670.1 60.169 118 46 1 1 118 1 117 4.60e-46 161
Msa1337540 AT5G65230.1 59.322 118 47 1 1 118 1 117 8.94e-46 159
Msa1337540 AT5G60890.1 59.829 117 46 1 1 117 1 116 1.18e-45 158
Msa1337540 AT2G47460.1 58.120 117 48 1 1 117 1 116 1.51e-45 159
Msa1337540 AT3G13540.1 58.261 115 47 1 4 118 15 128 1.52e-45 156
Msa1337540 AT4G22680.1 59.322 118 47 1 1 118 1 117 1.53e-45 157
Msa1337540 AT1G57560.2 51.333 150 69 2 1 150 1 146 3.21e-45 156
Msa1337540 AT4G01680.3 59.829 117 46 1 1 117 1 116 3.52e-45 155
Msa1337540 AT3G12820.1 59.322 118 47 1 3 120 5 121 5.26e-45 154
Msa1337540 AT5G10280.1 57.627 118 49 1 1 118 1 117 5.50e-45 157
Msa1337540 AT1G18570.1 61.157 121 45 2 1 120 1 120 6.05e-45 157
Msa1337540 AT4G01680.1 59.829 117 46 1 1 117 1 116 1.10e-44 156
Msa1337540 AT1G63910.1 58.120 117 48 1 1 117 1 116 2.57e-44 156
Msa1337540 AT5G26660.1 56.667 120 51 1 1 120 1 119 2.64e-44 156
Msa1337540 AT5G16600.1 59.829 117 46 1 1 117 1 116 4.35e-44 154
Msa1337540 AT1G57560.1 50.667 150 73 1 1 150 1 149 5.16e-44 154
Msa1337540 AT5G62320.1 50.360 139 63 1 2 134 3 141 9.99e-44 151
Msa1337540 AT5G54230.1 59.322 118 47 1 1 118 1 117 1.75e-43 153
Msa1337540 AT1G66230.1 58.120 117 48 1 1 117 1 116 1.99e-43 152
Msa1337540 AT5G07700.1 57.627 118 49 1 1 118 1 117 4.73e-43 152
Msa1337540 AT5G07700.2 57.627 118 49 1 1 118 1 117 4.73e-43 152
Msa1337540 AT1G09540.1 58.120 117 48 1 1 117 1 116 5.25e-43 153
Msa1337540 AT5G14340.1 51.429 140 64 3 1 137 13 151 6.80e-43 150
Msa1337540 AT3G13890.2 54.237 118 53 1 1 118 1 117 8.28e-42 149
Msa1337540 AT1G74080.1 55.000 120 53 1 1 120 1 119 1.08e-41 148
Msa1337540 AT4G01680.2 54.264 129 46 2 1 117 1 128 1.49e-41 148
Msa1337540 AT3G12720.1 50.388 129 63 1 6 134 16 143 1.93e-41 147
Msa1337540 AT1G79180.2 48.993 149 42 2 2 117 4 151 2.31e-41 147
Msa1337540 AT3G27920.1 41.885 191 99 3 13 203 15 193 2.39e-40 142
Msa1337540 AT5G14750.1 54.310 116 52 1 13 128 17 131 4.98e-40 140
Msa1337540 AT5G52600.1 56.034 116 50 1 9 124 9 123 6.39e-40 140
Msa1337540 AT3G13890.1 50.394 127 53 2 1 118 1 126 8.72e-39 142
Msa1337540 AT5G40330.1 57.143 105 44 1 13 117 13 116 1.51e-38 137
Msa1337540 AT1G74430.1 54.167 120 54 1 1 120 1 119 3.99e-38 137
Msa1337540 AT5G55020.1 58.491 106 43 1 12 117 26 130 4.80e-38 142
Msa1337540 AT2G32460.2 57.143 105 44 1 12 116 6 109 3.06e-37 140
Msa1337540 AT2G32460.1 57.143 105 44 1 12 116 18 121 3.34e-37 140
Msa1337540 AT4G26930.1 57.692 104 43 1 12 115 19 121 4.60e-37 137
Msa1337540 AT5G12870.1 55.660 106 46 1 12 117 18 122 6.65e-37 134
Msa1337540 AT5G06100.1 55.046 109 48 1 8 116 28 135 2.54e-36 137
Msa1337540 AT1G18710.1 51.282 117 56 1 1 117 1 116 3.87e-36 132
Msa1337540 AT3G27810.1 55.963 109 47 1 9 117 17 124 3.98e-36 131
Msa1337540 AT5G35550.1 53.211 109 50 1 9 117 11 118 5.88e-36 131
Msa1337540 AT1G25340.1 47.059 153 74 2 10 156 16 167 6.04e-36 132
Msa1337540 AT5G06100.5 55.046 109 48 1 8 116 28 135 7.06e-36 136
Msa1337540 AT5G06100.2 55.046 109 48 1 8 116 28 135 7.06e-36 136
Msa1337540 AT5G06100.3 55.046 109 48 1 8 116 28 135 7.06e-36 136
Msa1337540 AT5G06100.4 55.046 109 48 1 8 116 28 135 7.06e-36 136
Msa1337540 AT3G01530.1 51.818 110 52 1 8 117 21 129 8.24e-36 129
Msa1337540 AT3G08500.1 55.046 109 48 1 9 117 27 134 9.96e-36 133
Msa1337540 AT3G11440.2 50.926 108 52 1 9 116 38 144 2.50e-35 134
Msa1337540 AT5G40350.1 54.128 109 49 1 10 118 15 122 3.44e-35 128
Msa1337540 AT3G11440.3 50.926 108 52 1 9 116 38 144 1.15e-34 134
Msa1337540 AT3G11440.4 50.926 108 52 1 9 116 38 144 1.15e-34 134
Msa1337540 AT3G11440.1 50.926 108 52 1 9 116 38 144 1.15e-34 134
Msa1337540 AT5G52260.1 54.783 115 51 1 9 123 9 122 4.63e-34 126
Msa1337540 AT2G47190.1 48.413 126 62 2 8 133 16 138 1.04e-33 125
Msa1337540 AT2G26960.1 43.243 148 81 3 9 154 17 163 1.41e-33 129
Msa1337540 AT4G25560.1 54.717 106 47 1 13 118 11 115 2.36e-33 125
Msa1337540 AT1G48000.1 55.963 109 45 2 12 118 32 139 2.44e-33 124
Msa1337540 AT3G48920.1 48.333 120 61 1 9 128 15 133 2.59e-33 124
Msa1337540 AT4G13480.1 55.769 104 45 1 13 116 7 109 2.94e-33 124
Msa1337540 AT3G24310.1 55.769 104 45 1 13 116 19 121 5.05e-33 124
Msa1337540 AT1G66370.1 50.000 116 53 2 1 116 1 111 5.69e-33 123
Msa1337540 AT1G68320.1 54.286 105 47 1 12 116 19 122 2.89e-32 122
Msa1337540 AT3G06490.1 56.481 108 46 1 8 115 15 121 9.52e-32 122
Msa1337540 AT3G30210.1 48.739 119 60 1 12 130 27 144 1.73e-31 120
Msa1337540 AT1G25340.2 45.098 153 72 3 10 156 16 162 2.86e-31 119
Msa1337540 AT1G25340.3 45.098 153 72 3 10 156 16 162 4.46e-31 119
Msa1337540 AT1G66380.1 53.333 105 48 1 12 116 8 111 5.22e-31 114
Msa1337540 AT5G26660.2 58.537 82 34 0 39 120 7 88 3.33e-30 117
Msa1337540 AT5G14750.3 55.556 90 37 1 39 128 11 97 3.34e-30 113
Msa1337540 AT1G66390.1 52.381 105 49 1 12 116 8 111 8.52e-30 115
Msa1337540 AT5G49620.1 53.704 108 49 1 8 115 22 128 1.51e-29 115
Msa1337540 AT1G56650.1 52.381 105 49 1 12 116 8 111 1.53e-29 114
Msa1337540 AT5G59780.3 46.364 110 58 1 13 122 9 117 4.83e-29 112
Msa1337540 AT3G46130.1 46.364 110 58 1 13 122 10 118 4.93e-29 113
Msa1337540 AT3G47600.2 46.622 148 71 4 45 184 38 185 5.14e-29 114
Msa1337540 AT3G53200.1 51.429 105 50 1 12 116 9 112 2.32e-28 110
Msa1337540 AT2G26950.1 43.750 112 61 2 9 120 13 122 2.53e-27 111
Msa1337540 AT3G27810.2 63.014 73 27 0 45 117 3 75 4.61e-27 105
Msa1337540 AT1G18960.1 46.154 104 52 2 14 117 10 109 6.77e-27 108
Msa1337540 AT5G35550.2 59.494 79 32 0 39 117 43 121 9.86e-27 107
Msa1337540 AT3G60460.1 46.296 108 56 2 9 115 8 114 1.75e-26 107
Msa1337540 AT3G12820.2 61.111 72 28 0 49 120 2 73 2.84e-26 103
Msa1337540 AT2G23290.1 51.456 103 48 2 14 116 13 113 2.99e-26 106
Msa1337540 AT5G49620.2 47.541 122 49 2 8 115 22 142 4.78e-26 106
Msa1337540 AT5G40350.2 59.459 74 30 0 45 118 4 77 4.88e-26 102
Msa1337540 AT3G53200.2 60.274 73 29 0 44 116 7 79 8.71e-25 100
Msa1337540 AT3G27785.1 47.222 108 55 2 9 116 184 289 1.07e-24 104
Msa1337540 AT5G67300.1 46.364 110 57 2 10 119 2 109 1.27e-24 102
Msa1337540 AT5G59780.2 54.430 79 36 0 44 122 18 96 1.28e-24 100
Msa1337540 AT3G50060.1 47.273 110 56 2 10 119 2 109 2.00e-24 101
Msa1337540 AT3G46130.4 54.430 79 36 0 44 122 18 96 2.22e-24 100
Msa1337540 AT4G37260.1 47.573 103 52 2 14 116 13 113 3.08e-24 101
Msa1337540 AT1G66380.3 61.111 72 28 0 45 116 7 78 6.29e-24 95.1
Msa1337540 AT5G40360.1 32.447 188 103 4 12 181 156 337 7.59e-24 101
Msa1337540 AT3G46130.3 54.545 77 35 0 46 122 10 86 8.78e-24 98.2
Msa1337540 AT3G09230.1 38.298 141 79 3 14 154 55 187 1.22e-23 100
Msa1337540 AT2G39880.1 47.573 103 52 2 14 116 50 150 5.45e-23 99.0
Msa1337540 AT3G55730.1 48.544 103 51 2 14 116 56 156 7.30e-23 99.0
Msa1337540 AT1G69560.1 31.050 219 104 7 9 219 102 281 7.84e-23 97.8
Msa1337540 AT1G69560.2 31.050 219 104 7 9 219 118 297 1.30e-22 97.4
Msa1337540 AT5G58850.1 39.683 126 73 3 11 136 102 224 2.09e-22 97.8
Msa1337540 AT4G18770.1 42.982 114 62 3 9 122 212 322 2.94e-22 97.4
Msa1337540 AT1G17950.1 44.660 103 55 2 14 116 5 105 3.11e-22 94.4
Msa1337540 AT2G25230.1 43.363 113 61 3 9 121 21 130 5.78e-22 93.6
Msa1337540 AT1G22640.3 56.000 75 32 1 59 133 1 74 7.51e-22 92.4
Msa1337540 AT1G26780.1 41.748 103 58 2 14 116 98 198 1.52e-20 90.5
Msa1337540 AT1G26780.2 41.748 103 58 2 14 116 98 198 2.96e-20 90.9
Msa1337540 AT5G17800.1 39.091 110 65 2 14 123 93 200 4.85e-20 89.7
Msa1337540 AT5G14750.4 52.857 70 33 0 59 128 1 70 6.56e-20 85.1
Msa1337540 AT5G14750.2 52.857 70 33 0 59 128 1 70 6.56e-20 85.1
Msa1337540 AT4G33450.1 40.171 117 63 3 9 125 14 123 8.50e-20 87.8
Msa1337540 AT5G11050.1 34.395 157 90 4 11 167 102 245 9.48e-20 90.1
Msa1337540 AT3G23250.2 62.712 59 22 0 59 117 1 59 1.39e-19 86.7
Msa1337540 AT1G73410.1 45.631 103 54 2 14 116 6 106 1.55e-19 87.0
Msa1337540 AT3G09370.2 44.660 103 55 2 14 116 135 235 1.80e-19 89.7
Msa1337540 AT3G09370.2 27.778 180 115 4 14 180 83 260 9.05e-12 66.6
Msa1337540 AT3G09370.1 44.660 103 55 2 14 116 130 230 2.22e-19 89.4
Msa1337540 AT3G09370.1 27.778 180 115 4 14 180 78 255 1.04e-11 66.2
Msa1337540 AT3G09370.3 44.660 103 55 2 14 116 143 243 2.53e-19 89.4
Msa1337540 AT3G09370.3 27.778 180 115 4 14 180 91 268 8.29e-12 66.6
Msa1337540 AT1G73410.2 45.631 103 54 2 14 116 6 106 3.87e-19 84.7
Msa1337540 AT1G71030.2 50.746 67 33 0 52 118 5 71 4.37e-19 84.3
Msa1337540 AT1G71030.1 50.746 67 33 0 52 118 19 85 5.23e-19 84.3
Msa1337540 AT5G02320.3 42.308 104 58 2 14 117 67 168 1.51e-18 87.0
Msa1337540 AT5G02320.3 29.070 172 107 4 14 172 15 184 6.70e-13 70.1
Msa1337540 AT5G02320.1 42.308 104 58 2 14 117 127 228 1.58e-18 87.0
Msa1337540 AT5G02320.1 29.070 172 107 4 14 172 75 244 6.75e-13 70.1
Msa1337540 AT5G02320.2 42.308 104 58 2 14 117 127 228 1.58e-18 87.0
Msa1337540 AT5G02320.2 29.070 172 107 4 14 172 75 244 6.75e-13 70.1
Msa1337540 AT2G37630.1 36.957 138 75 4 17 152 7 134 2.14e-18 85.9
Msa1337540 AT4G32730.1 42.308 104 58 2 14 117 87 188 4.65e-18 85.9
Msa1337540 AT4G32730.5 42.308 104 58 2 14 117 87 188 5.61e-18 85.9
Msa1337540 AT4G32730.4 42.308 104 58 2 14 117 87 188 5.61e-18 85.9
Msa1337540 AT4G32730.3 42.308 104 58 2 14 117 87 188 5.61e-18 85.9
Msa1337540 AT4G32730.2 42.308 104 58 2 14 117 87 188 5.61e-18 85.9
Msa1337540 AT2G02820.3 42.000 100 56 2 17 116 33 130 7.43e-18 83.6
Msa1337540 AT2G02820.1 42.000 100 56 2 17 116 33 130 1.55e-17 84.0
Msa1337540 AT5G40430.1 36.449 107 65 2 9 115 49 152 2.01e-17 81.3
Msa1337540 AT2G02820.2 42.000 100 56 2 17 116 33 130 2.34e-17 83.6
Msa1337540 AT5G11510.2 40.385 104 60 2 14 117 81 182 3.06e-17 83.6
Msa1337540 AT5G11510.3 40.385 104 60 2 14 117 81 182 3.17e-17 83.6
Msa1337540 AT5G11510.1 40.385 104 60 2 14 117 81 182 3.17e-17 83.6
Msa1337540 AT5G11510.4 40.385 104 60 2 14 117 81 182 3.17e-17 83.6
Msa1337540 AT5G11510.5 40.385 104 60 2 14 117 81 182 3.33e-17 83.6
Msa1337540 AT3G29020.1 32.000 150 95 4 14 163 65 207 6.97e-17 79.3
Msa1337540 AT1G14350.2 36.585 123 76 2 17 139 28 148 9.58e-17 81.3
Msa1337540 AT1G14350.1 36.585 123 76 2 17 139 28 148 9.58e-17 81.3
Msa1337540 AT3G29020.2 31.655 139 82 3 14 141 67 203 1.06e-16 80.1
Msa1337540 AT1G66380.2 43.902 82 45 1 12 93 8 88 2.67e-16 74.3
Msa1337540 AT4G00540.2 36.111 144 69 4 11 136 100 238 8.79e-16 78.2
Msa1337540 AT4G00540.1 36.111 144 69 4 11 136 98 236 1.23e-15 78.2
Msa1337540 AT5G39700.1 35.345 116 70 3 9 124 51 161 1.93e-13 68.6
Msa1337540 AT1G74650.3 50.000 66 29 1 78 143 1 62 8.52e-11 62.0
Msa1337540 AT5G59780.1 48.077 52 27 0 71 122 1 52 9.49e-11 60.5
Msa1337540 AT1G22640.2 46.032 63 27 2 71 133 4 59 9.71e-11 60.8

Find 60 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCACAGGTTGATCTTT+TGG 0.226254 tig0001526:+193442 Msa1337540:CDS
AATCCACCATGTTTGATATT+AGG 0.227994 tig0001526:-192867 None:intergenic
TCAGTTACCTTCAATGCTTC+TGG 0.240988 tig0001526:+193497 Msa1337540:CDS
GAGAAAGCACTTTGCATCAT+AGG 0.280556 tig0001526:-193419 None:intergenic
ATGTCATTGTCTGTTCTTCC+AGG 0.285868 tig0001526:-193104 None:intergenic
TTTGGAGACTATTATTCCTT+TGG 0.323714 tig0001526:+193460 Msa1337540:CDS
CAAATGGAACTGGAGGAAAT+TGG 0.340815 tig0001526:+192468 Msa1337540:CDS
TTCTCAACAGCTTCTCCTCT+TGG 0.342126 tig0001526:-193566 None:intergenic
CAAAGGATCAAAACTTGATA+TGG 0.348542 tig0001526:+193726 Msa1337540:CDS
AGGTAACTGAGCAGCAATAA+TGG 0.351596 tig0001526:-193084 None:intergenic
TTGAGTGTAGCATCTTCTTC+AGG 0.353099 tig0001526:-192431 None:intergenic
TACTAACAATGAAGGAATTC+AGG 0.353154 tig0001526:+193592 Msa1337540:CDS
CAAGATTATGAACTAGGTTA+TGG 0.365764 tig0001526:+193833 Msa1337540:CDS
ATAACCCTGCTGCACTAGTT+TGG 0.369985 tig0001526:+193333 Msa1337540:CDS
TACATTGAAACAAATGGAAC+TGG 0.413107 tig0001526:+192458 Msa1337540:CDS
GCTATTTCCAGAAGCATTGA+AGG 0.415074 tig0001526:-193504 None:intergenic
TCTTGAGAAGGATGCAACTT+TGG 0.415428 tig0001526:-193356 None:intergenic
AAATCCTACATTGAAACAAA+TGG 0.425709 tig0001526:+192452 Msa1337540:CDS
CATAACCTAGTTCATAATCT+TGG 0.426322 tig0001526:-193832 None:intergenic
TGATGAATCCCATGAGTTTG+AGG 0.428809 tig0001526:-193783 None:intergenic
ATATGGTGGTCAAATGATTC+AGG 0.431167 tig0001526:+193743 Msa1337540:CDS
ATTATTGCTGCTCAGTTACC+TGG 0.434957 tig0001526:+193086 Msa1337540:CDS
AGTTCCATTTGTTTCAATGT+AGG 0.437388 tig0001526:-192456 None:intergenic
GATTCAGGTGATACTAAATC+AGG 0.438934 tig0001526:+193758 Msa1337540:CDS
ATGAATCAAAAGGACACAAA+TGG 0.442409 tig0001526:+193203 Msa1337540:CDS
CAATGAAGGAATTCAGGAAC+TGG 0.460259 tig0001526:+193598 Msa1337540:CDS
TTTGGCCAAACTAGTGCAGC+AGG 0.466216 tig0001526:-193338 None:intergenic
ATGTTCCAAGATTATGAACT+AGG 0.478325 tig0001526:+193827 Msa1337540:CDS
AATCAGGATCCTCAAACTCA+TGG 0.482426 tig0001526:+193774 Msa1337540:CDS
CAACAACTTGATGAATCAAA+AGG 0.482715 tig0001526:+193193 Msa1337540:CDS
AAGTGCTTTCTCTTCACCAC+AGG 0.493710 tig0001526:+193430 Msa1337540:CDS
TGCAGCCTTTACATAAGCAT+TGG 0.498062 tig0001526:+192915 Msa1337540:CDS
TTTACATAAGCATTGGAAGC+AGG 0.498797 tig0001526:+192922 Msa1337540:CDS
TCAACTAATCTTATGCAAGA+AGG 0.503672 tig0001526:+193803 Msa1337540:CDS
AGATTGAAGAAGAAATTACT+TGG 0.505847 tig0001526:+193146 Msa1337540:CDS
CAACTAATCTTATGCAAGAA+GGG 0.511092 tig0001526:+193804 Msa1337540:CDS
AGAAAGCACTTTGCATCATA+GGG 0.517317 tig0001526:-193418 None:intergenic
TGCTTCCAATGCTTATGTAA+AGG 0.518624 tig0001526:-192920 None:intergenic
TATGAATAACAATGGTTCAA+AGG 0.518828 tig0001526:+193709 Msa1337540:CDS
GTGGAAAGAGTTGCAGACTT+AGG 0.527362 tig0001526:+192826 Msa1337540:CDS
GAGAAGAGTACTAACAATGA+AGG 0.532789 tig0001526:+193584 Msa1337540:CDS
GAAGTATTGTTATTCTCCAA+AGG 0.545661 tig0001526:-193476 None:intergenic
ACGTTAGCCTTGTCACAACA+TGG 0.569415 tig0001526:-192389 None:intergenic
ATCAGGATCCTCAAACTCAT+GGG 0.570771 tig0001526:+193775 Msa1337540:CDS
GACAAGGCTAACGTGAAGAA+AGG 0.571971 tig0001526:+192398 Msa1337540:CDS
AGGATCAAAACTTGATATGG+TGG 0.573580 tig0001526:+193729 Msa1337540:CDS
TAACAGAAATATAATTACAC+TGG 0.576922 tig0001526:+193646 Msa1337540:CDS
TTCAGAGATATGAATAACAA+TGG 0.582081 tig0001526:+193701 Msa1337540:CDS
TTTACAGGGCTCAAGAGATG+TGG 0.587584 tig0001526:+192807 Msa1337540:intron
CTAACGTGAAGAAAGGACCT+TGG 0.601182 tig0001526:+192405 Msa1337540:CDS
GAAAGAGTTGCAGACTTAGG+TGG 0.603750 tig0001526:+192829 Msa1337540:CDS
ATTGAAACAAATGGAACTGG+AGG 0.607543 tig0001526:+192461 Msa1337540:CDS
CATTCAAGTGTTGCACCAAG+AGG 0.626324 tig0001526:+193551 Msa1337540:CDS
TAGAGCTCCATGTTGTGACA+AGG 0.654472 tig0001526:+192382 Msa1337540:CDS
TTGGCCAAACTAGTGCAGCA+GGG 0.663432 tig0001526:-193337 None:intergenic
GCATCTTCTTCAGGAGACCA+AGG 0.668102 tig0001526:-192422 None:intergenic
GTCTCCAAAAGATCAACCTG+TGG 0.671421 tig0001526:-193446 None:intergenic
TTGAGACCTAATATCAAACA+TGG 0.684201 tig0001526:+192861 Msa1337540:CDS
AGACCTAATATCAAACATGG+TGG 0.691846 tig0001526:+192864 Msa1337540:CDS
ACTGGAAGATGAATATCGTG+TGG 0.783497 tig0001526:+193664 Msa1337540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTACAAAAAATTTACA+GGG + tig0001526:192793-192812 Msa1337540:intron 10.0%
!! ATAATTACAAAAAATTTACA+GGG + tig0001526:192793-192812 Msa1337540:intron 10.0%
!! AATTATTATTTATCTCTTTG+TGG + tig0001526:192590-192609 Msa1337540:intron 15.0%
!! GATAATTACAAAAAATTTAC+AGG + tig0001526:192792-192811 Msa1337540:intron 15.0%
!! AATTGTATCTATATAACTAT+AGG + tig0001526:193057-193076 Msa1337540:intron 15.0%
!! TATTATTGTAAAAAGACAAA+GGG - tig0001526:193316-193335 None:intergenic 15.0%
!! TTATTATTGTAAAAAGACAA+AGG - tig0001526:193317-193336 None:intergenic 15.0%
!! AATTATTATTTATCTCTTTG+TGG + tig0001526:192590-192609 Msa1337540:intron 15.0%
!! GATAATTACAAAAAATTTAC+AGG + tig0001526:192792-192811 Msa1337540:intron 15.0%
!! AATTGTATCTATATAACTAT+AGG + tig0001526:193057-193076 Msa1337540:intron 15.0%
!! TATTATTGTAAAAAGACAAA+GGG - tig0001526:193316-193335 None:intergenic 15.0%
!! TTATTATTGTAAAAAGACAA+AGG - tig0001526:193317-193336 None:intergenic 15.0%
!!! AAGTAATTACCAATTTTTTG+AGG - tig0001526:192503-192522 None:intergenic 20.0%
!! ATTAGTGCAAACTAATTAAT+GGG + tig0001526:192770-192789 Msa1337540:intron 20.0%
!! TAACAGAAATATAATTACAC+TGG + tig0001526:193646-193665 Msa1337540:CDS 20.0%
!!! AAGTAATTACCAATTTTTTG+AGG - tig0001526:192503-192522 None:intergenic 20.0%
!! ATTAGTGCAAACTAATTAAT+GGG + tig0001526:192770-192789 Msa1337540:intron 20.0%
!! TAACAGAAATATAATTACAC+TGG + tig0001526:193646-193665 Msa1337540:CDS 20.0%
! AAATCCTACATTGAAACAAA+TGG + tig0001526:192452-192471 Msa1337540:CDS 25.0%
!!! TCTATCTCTAGTTTTGTATT+TGG + tig0001526:192710-192729 Msa1337540:intron 25.0%
! GATTAGTGCAAACTAATTAA+TGG + tig0001526:192769-192788 Msa1337540:intron 25.0%
! TGTATCTATATAACTATAGG+TGG + tig0001526:193060-193079 Msa1337540:intron 25.0%
! ACAATGACATCAAAAACTAT+TGG + tig0001526:193117-193136 Msa1337540:CDS 25.0%
! AGATTGAAGAAGAAATTACT+TGG + tig0001526:193146-193165 Msa1337540:CDS 25.0%
! TTCAGAGATATGAATAACAA+TGG + tig0001526:193701-193720 Msa1337540:CDS 25.0%
! TATGAATAACAATGGTTCAA+AGG + tig0001526:193709-193728 Msa1337540:CDS 25.0%
! AAATCCTACATTGAAACAAA+TGG + tig0001526:192452-192471 Msa1337540:CDS 25.0%
!!! TCTATCTCTAGTTTTGTATT+TGG + tig0001526:192710-192729 Msa1337540:intron 25.0%
! GATTAGTGCAAACTAATTAA+TGG + tig0001526:192769-192788 Msa1337540:intron 25.0%
! TGTATCTATATAACTATAGG+TGG + tig0001526:193060-193079 Msa1337540:intron 25.0%
! ACAATGACATCAAAAACTAT+TGG + tig0001526:193117-193136 Msa1337540:CDS 25.0%
! AGATTGAAGAAGAAATTACT+TGG + tig0001526:193146-193165 Msa1337540:CDS 25.0%
! TTCAGAGATATGAATAACAA+TGG + tig0001526:193701-193720 Msa1337540:CDS 25.0%
! TATGAATAACAATGGTTCAA+AGG + tig0001526:193709-193728 Msa1337540:CDS 25.0%
AGTTCCATTTGTTTCAATGT+AGG - tig0001526:192459-192478 None:intergenic 30.0%
TACATTGAAACAAATGGAAC+TGG + tig0001526:192458-192477 Msa1337540:CDS 30.0%
ATTGCTCTTCCTCAAAAAAT+TGG + tig0001526:192491-192510 Msa1337540:CDS 30.0%
! ATATGTATGTATTGATCACG+AGG + tig0001526:192566-192585 Msa1337540:intron 30.0%
!!! ACCTCTTGTACTTTTTTCAT+CGG + tig0001526:192620-192639 Msa1337540:intron 30.0%
TTGAGACCTAATATCAAACA+TGG + tig0001526:192861-192880 Msa1337540:CDS 30.0%
AATCCACCATGTTTGATATT+AGG - tig0001526:192870-192889 None:intergenic 30.0%
GAGAAGAAACAATTCTAACA+TGG - tig0001526:193024-193043 None:intergenic 30.0%
CAACAACTTGATGAATCAAA+AGG + tig0001526:193193-193212 Msa1337540:CDS 30.0%
ATGAATCAAAAGGACACAAA+TGG + tig0001526:193203-193222 Msa1337540:CDS 30.0%
!!! TGGATCATTTTTTCTTGAGA+AGG - tig0001526:193371-193390 None:intergenic 30.0%
!!! TAGAGTTTTGAAGGCTAATT+TGG - tig0001526:193391-193410 None:intergenic 30.0%
!! GGTTGTTATTAGAGTTTTGA+AGG - tig0001526:193400-193419 None:intergenic 30.0%
TTTGGAGACTATTATTCCTT+TGG + tig0001526:193460-193479 Msa1337540:CDS 30.0%
!! GAAGTATTGTTATTCTCCAA+AGG - tig0001526:193479-193498 None:intergenic 30.0%
TACTAACAATGAAGGAATTC+AGG + tig0001526:193592-193611 Msa1337540:CDS 30.0%
CAAAGGATCAAAACTTGATA+TGG + tig0001526:193726-193745 Msa1337540:CDS 30.0%
TCAACTAATCTTATGCAAGA+AGG + tig0001526:193803-193822 Msa1337540:CDS 30.0%
CAACTAATCTTATGCAAGAA+GGG + tig0001526:193804-193823 Msa1337540:CDS 30.0%
ATGTTCCAAGATTATGAACT+AGG + tig0001526:193827-193846 Msa1337540:CDS 30.0%
CATAACCTAGTTCATAATCT+TGG - tig0001526:193835-193854 None:intergenic 30.0%
CAAGATTATGAACTAGGTTA+TGG + tig0001526:193833-193852 Msa1337540:CDS 30.0%
AGTTCCATTTGTTTCAATGT+AGG - tig0001526:192459-192478 None:intergenic 30.0%
TACATTGAAACAAATGGAAC+TGG + tig0001526:192458-192477 Msa1337540:CDS 30.0%
ATTGCTCTTCCTCAAAAAAT+TGG + tig0001526:192491-192510 Msa1337540:CDS 30.0%
! ATATGTATGTATTGATCACG+AGG + tig0001526:192566-192585 Msa1337540:intron 30.0%
!!! ACCTCTTGTACTTTTTTCAT+CGG + tig0001526:192620-192639 Msa1337540:intron 30.0%
TTGAGACCTAATATCAAACA+TGG + tig0001526:192861-192880 Msa1337540:CDS 30.0%
AATCCACCATGTTTGATATT+AGG - tig0001526:192870-192889 None:intergenic 30.0%
GAGAAGAAACAATTCTAACA+TGG - tig0001526:193024-193043 None:intergenic 30.0%
CAACAACTTGATGAATCAAA+AGG + tig0001526:193193-193212 Msa1337540:CDS 30.0%
ATGAATCAAAAGGACACAAA+TGG + tig0001526:193203-193222 Msa1337540:CDS 30.0%
!!! TGGATCATTTTTTCTTGAGA+AGG - tig0001526:193371-193390 None:intergenic 30.0%
!!! TAGAGTTTTGAAGGCTAATT+TGG - tig0001526:193391-193410 None:intergenic 30.0%
!! GGTTGTTATTAGAGTTTTGA+AGG - tig0001526:193400-193419 None:intergenic 30.0%
TTTGGAGACTATTATTCCTT+TGG + tig0001526:193460-193479 Msa1337540:CDS 30.0%
!! GAAGTATTGTTATTCTCCAA+AGG - tig0001526:193479-193498 None:intergenic 30.0%
TACTAACAATGAAGGAATTC+AGG + tig0001526:193592-193611 Msa1337540:CDS 30.0%
CAAAGGATCAAAACTTGATA+TGG + tig0001526:193726-193745 Msa1337540:CDS 30.0%
TCAACTAATCTTATGCAAGA+AGG + tig0001526:193803-193822 Msa1337540:CDS 30.0%
CAACTAATCTTATGCAAGAA+GGG + tig0001526:193804-193823 Msa1337540:CDS 30.0%
ATGTTCCAAGATTATGAACT+AGG + tig0001526:193827-193846 Msa1337540:CDS 30.0%
CATAACCTAGTTCATAATCT+TGG - tig0001526:193835-193854 None:intergenic 30.0%
CAAGATTATGAACTAGGTTA+TGG + tig0001526:193833-193852 Msa1337540:CDS 30.0%
ATTGAAACAAATGGAACTGG+AGG + tig0001526:192461-192480 Msa1337540:CDS 35.0%
!!! CCTCTTGTACTTTTTTCATC+GGG + tig0001526:192621-192640 Msa1337540:intron 35.0%
AGACCTAATATCAAACATGG+TGG + tig0001526:192864-192883 Msa1337540:CDS 35.0%
TGCTTCCAATGCTTATGTAA+AGG - tig0001526:192923-192942 None:intergenic 35.0%
!! TTTACATAAGCATTGGAAGC+AGG + tig0001526:192922-192941 Msa1337540:CDS 35.0%
GAGAAATTTGAGGATAGACA+AGG - tig0001526:192949-192968 None:intergenic 35.0%
TGTAGAGATGGAGAAATTTG+AGG - tig0001526:192959-192978 None:intergenic 35.0%
ACAGTAGTATGTTGTAGAGA+TGG - tig0001526:192971-192990 None:intergenic 35.0%
!! AGAAAGCACTTTGCATCATA+GGG - tig0001526:193421-193440 None:intergenic 35.0%
!! GAGAAGAGTACTAACAATGA+AGG + tig0001526:193584-193603 Msa1337540:CDS 35.0%
AGGATCAAAACTTGATATGG+TGG + tig0001526:193729-193748 Msa1337540:CDS 35.0%
ATATGGTGGTCAAATGATTC+AGG + tig0001526:193743-193762 Msa1337540:CDS 35.0%
GATTCAGGTGATACTAAATC+AGG + tig0001526:193758-193777 Msa1337540:CDS 35.0%
ATTGAAACAAATGGAACTGG+AGG + tig0001526:192461-192480 Msa1337540:CDS 35.0%
!!! CCTCTTGTACTTTTTTCATC+GGG + tig0001526:192621-192640 Msa1337540:intron 35.0%
AGACCTAATATCAAACATGG+TGG + tig0001526:192864-192883 Msa1337540:CDS 35.0%
TGCTTCCAATGCTTATGTAA+AGG - tig0001526:192923-192942 None:intergenic 35.0%
!! TTTACATAAGCATTGGAAGC+AGG + tig0001526:192922-192941 Msa1337540:CDS 35.0%
GAGAAATTTGAGGATAGACA+AGG - tig0001526:192949-192968 None:intergenic 35.0%
TGTAGAGATGGAGAAATTTG+AGG - tig0001526:192959-192978 None:intergenic 35.0%
ACAGTAGTATGTTGTAGAGA+TGG - tig0001526:192971-192990 None:intergenic 35.0%
!! AGAAAGCACTTTGCATCATA+GGG - tig0001526:193421-193440 None:intergenic 35.0%
!! GAGAAGAGTACTAACAATGA+AGG + tig0001526:193584-193603 Msa1337540:CDS 35.0%
AGGATCAAAACTTGATATGG+TGG + tig0001526:193729-193748 Msa1337540:CDS 35.0%
ATATGGTGGTCAAATGATTC+AGG + tig0001526:193743-193762 Msa1337540:CDS 35.0%
GATTCAGGTGATACTAAATC+AGG + tig0001526:193758-193777 Msa1337540:CDS 35.0%
TTGAGTGTAGCATCTTCTTC+AGG - tig0001526:192434-192453 None:intergenic 40.0%
CAAATGGAACTGGAGGAAAT+TGG + tig0001526:192468-192487 Msa1337540:CDS 40.0%
! CCCGATGAAAAAAGTACAAG+AGG - tig0001526:192624-192643 None:intergenic 40.0%
TGCAGCCTTTACATAAGCAT+TGG + tig0001526:192915-192934 Msa1337540:CDS 40.0%
AGGTAACTGAGCAGCAATAA+TGG - tig0001526:193087-193106 None:intergenic 40.0%
ATTATTGCTGCTCAGTTACC+TGG + tig0001526:193086-193105 Msa1337540:CDS 40.0%
ATGTCATTGTCTGTTCTTCC+AGG - tig0001526:193107-193126 None:intergenic 40.0%
TCTTGAGAAGGATGCAACTT+TGG - tig0001526:193359-193378 None:intergenic 40.0%
!! GAGAAAGCACTTTGCATCAT+AGG - tig0001526:193422-193441 None:intergenic 40.0%
!!! TTCACCACAGGTTGATCTTT+TGG + tig0001526:193442-193461 Msa1337540:CDS 40.0%
TCAGTTACCTTCAATGCTTC+TGG + tig0001526:193497-193516 Msa1337540:CDS 40.0%
!! GCTATTTCCAGAAGCATTGA+AGG - tig0001526:193507-193526 None:intergenic 40.0%
CAATGAAGGAATTCAGGAAC+TGG + tig0001526:193598-193617 Msa1337540:CDS 40.0%
ACTGGAAGATGAATATCGTG+TGG + tig0001526:193664-193683 Msa1337540:CDS 40.0%
AATCAGGATCCTCAAACTCA+TGG + tig0001526:193774-193793 Msa1337540:CDS 40.0%
ATCAGGATCCTCAAACTCAT+GGG + tig0001526:193775-193794 Msa1337540:CDS 40.0%
TGATGAATCCCATGAGTTTG+AGG - tig0001526:193786-193805 None:intergenic 40.0%
TTGAGTGTAGCATCTTCTTC+AGG - tig0001526:192434-192453 None:intergenic 40.0%
CAAATGGAACTGGAGGAAAT+TGG + tig0001526:192468-192487 Msa1337540:CDS 40.0%
! CCCGATGAAAAAAGTACAAG+AGG - tig0001526:192624-192643 None:intergenic 40.0%
TGCAGCCTTTACATAAGCAT+TGG + tig0001526:192915-192934 Msa1337540:CDS 40.0%
AGGTAACTGAGCAGCAATAA+TGG - tig0001526:193087-193106 None:intergenic 40.0%
ATTATTGCTGCTCAGTTACC+TGG + tig0001526:193086-193105 Msa1337540:CDS 40.0%
ATGTCATTGTCTGTTCTTCC+AGG - tig0001526:193107-193126 None:intergenic 40.0%
TCTTGAGAAGGATGCAACTT+TGG - tig0001526:193359-193378 None:intergenic 40.0%
!! GAGAAAGCACTTTGCATCAT+AGG - tig0001526:193422-193441 None:intergenic 40.0%
!!! TTCACCACAGGTTGATCTTT+TGG + tig0001526:193442-193461 Msa1337540:CDS 40.0%
TCAGTTACCTTCAATGCTTC+TGG + tig0001526:193497-193516 Msa1337540:CDS 40.0%
!! GCTATTTCCAGAAGCATTGA+AGG - tig0001526:193507-193526 None:intergenic 40.0%
CAATGAAGGAATTCAGGAAC+TGG + tig0001526:193598-193617 Msa1337540:CDS 40.0%
ACTGGAAGATGAATATCGTG+TGG + tig0001526:193664-193683 Msa1337540:CDS 40.0%
AATCAGGATCCTCAAACTCA+TGG + tig0001526:193774-193793 Msa1337540:CDS 40.0%
ATCAGGATCCTCAAACTCAT+GGG + tig0001526:193775-193794 Msa1337540:CDS 40.0%
TGATGAATCCCATGAGTTTG+AGG - tig0001526:193786-193805 None:intergenic 40.0%
TAGAGCTCCATGTTGTGACA+AGG + tig0001526:192382-192401 Msa1337540:CDS 45.0%
!! ACGTTAGCCTTGTCACAACA+TGG - tig0001526:192392-192411 None:intergenic 45.0%
GACAAGGCTAACGTGAAGAA+AGG + tig0001526:192398-192417 Msa1337540:CDS 45.0%
CTAACGTGAAGAAAGGACCT+TGG + tig0001526:192405-192424 Msa1337540:CDS 45.0%
TTTACAGGGCTCAAGAGATG+TGG + tig0001526:192807-192826 Msa1337540:intron 45.0%
GTGGAAAGAGTTGCAGACTT+AGG + tig0001526:192826-192845 Msa1337540:CDS 45.0%
GAAAGAGTTGCAGACTTAGG+TGG + tig0001526:192829-192848 Msa1337540:CDS 45.0%
ATAACCCTGCTGCACTAGTT+TGG + tig0001526:193333-193352 Msa1337540:CDS 45.0%
AAGTGCTTTCTCTTCACCAC+AGG + tig0001526:193430-193449 Msa1337540:CDS 45.0%
GTCTCCAAAAGATCAACCTG+TGG - tig0001526:193449-193468 None:intergenic 45.0%
! CATTCAAGTGTTGCACCAAG+AGG + tig0001526:193551-193570 Msa1337540:CDS 45.0%
TTCTCAACAGCTTCTCCTCT+TGG - tig0001526:193569-193588 None:intergenic 45.0%
TAGAGCTCCATGTTGTGACA+AGG + tig0001526:192382-192401 Msa1337540:CDS 45.0%
!! ACGTTAGCCTTGTCACAACA+TGG - tig0001526:192392-192411 None:intergenic 45.0%
GACAAGGCTAACGTGAAGAA+AGG + tig0001526:192398-192417 Msa1337540:CDS 45.0%
CTAACGTGAAGAAAGGACCT+TGG + tig0001526:192405-192424 Msa1337540:CDS 45.0%
TTTACAGGGCTCAAGAGATG+TGG + tig0001526:192807-192826 Msa1337540:intron 45.0%
GTGGAAAGAGTTGCAGACTT+AGG + tig0001526:192826-192845 Msa1337540:CDS 45.0%
GAAAGAGTTGCAGACTTAGG+TGG + tig0001526:192829-192848 Msa1337540:CDS 45.0%
ATAACCCTGCTGCACTAGTT+TGG + tig0001526:193333-193352 Msa1337540:CDS 45.0%
AAGTGCTTTCTCTTCACCAC+AGG + tig0001526:193430-193449 Msa1337540:CDS 45.0%
GTCTCCAAAAGATCAACCTG+TGG - tig0001526:193449-193468 None:intergenic 45.0%
! CATTCAAGTGTTGCACCAAG+AGG + tig0001526:193551-193570 Msa1337540:CDS 45.0%
TTCTCAACAGCTTCTCCTCT+TGG - tig0001526:193569-193588 None:intergenic 45.0%
GCATCTTCTTCAGGAGACCA+AGG - tig0001526:192425-192444 None:intergenic 50.0%
TTGGCCAAACTAGTGCAGCA+GGG - tig0001526:193340-193359 None:intergenic 50.0%
TTTGGCCAAACTAGTGCAGC+AGG - tig0001526:193341-193360 None:intergenic 50.0%
GCATCTTCTTCAGGAGACCA+AGG - tig0001526:192425-192444 None:intergenic 50.0%
TTGGCCAAACTAGTGCAGCA+GGG - tig0001526:193340-193359 None:intergenic 50.0%
TTTGGCCAAACTAGTGCAGC+AGG - tig0001526:193341-193360 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
tig0001526 gene 192377 193862 192377 ID=Msa1337540;Name=Msa1337540
tig0001526 mRNA 192377 193862 192377 ID=Msa1337540-mRNA-1;Parent=Msa1337540;Name=Msa1337540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|349
tig0001526 exon 192377 192512 192377 ID=Msa1337540-mRNA-1:exon:1214;Parent=Msa1337540-mRNA-1
tig0001526 exon 192814 192943 192814 ID=Msa1337540-mRNA-1:exon:1215;Parent=Msa1337540-mRNA-1
tig0001526 exon 193079 193862 193079 ID=Msa1337540-mRNA-1:exon:1216;Parent=Msa1337540-mRNA-1
tig0001526 CDS 192377 192512 192377 ID=Msa1337540-mRNA-1:cds;Parent=Msa1337540-mRNA-1
tig0001526 CDS 192814 192943 192814 ID=Msa1337540-mRNA-1:cds;Parent=Msa1337540-mRNA-1
tig0001526 CDS 193079 193862 193079 ID=Msa1337540-mRNA-1:cds;Parent=Msa1337540-mRNA-1
Gene Sequence

>Msa1337540

ATGGGTAGAGCTCCATGTTGTGACAAGGCTAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACACTCAAATCCTACATTGAAACAAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATAAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACAGACAATGACATCAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTTGGAAAGCGAAAACAATCGAATAACAACAACAACTTGATGAATCAAAAGGACACAAATGGAATAGATGATAATTCTTATTCAAATTCATTAAGTAGCTCAGCTCTTGAGAGACTTCAACTTCATATGCAACTTCAAAGTCTTCAAAACCCTTTGTCTTTTTACAATAATAACCCTGCTGCACTAGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGCCTTCAAAACTCTAATAACAACCCTATGATGCAAAGTGCTTTCTCTTCACCACAGGTTGATCTTTTGGAGACTATTATTCCTTTGGAGAATAACAATACTTCAGTTACCTTCAATGCTTCTGGAAATAGCAGTAATAATAATAATTCAATCATGCATTCAAGTGTTGCACCAAGAGGAGAAGCTGTTGAGAAGAGTACTAACAATGAAGGAATTCAGGAACTGGAAAGTGAACTAGATGAAATTCTCAATAACAGAAATATAATTACACTGGAAGATGAATATCGTGTGGCTGAATTTGATTGTTTCAGAGATATGAATAACAATGGTTCAAAGGATCAAAACTTGATATGGTGGTCAAATGATTCAGGTGATACTAAATCAGGATCCTCAAACTCATGGGATTCATCAACTAATCTTATGCAAGAAGGGATGTTCCAAGATTATGAACTAGGTTATGGTCTGTAG
Protein sequence

>Msa1337540

MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSNNNNNLMNQKDTNGIDDNSYSNSLSSSALERLQLHMQLQSLQNPLSFYNNNPAALVWPKLHPSQEKMIQISLQNSNNNPMMQSAFSSPQVDLLETIIPLENNNTSVTFNASGNSSNNNNSIMHSSVAPRGEAVEKSTNNEGIQELESELDEILNNRNIITLEDEYRVAEFDCFRDMNNNGSKDQNLIWWSNDSGDTKSGSSNSWDSSTNLMQEGMFQDYELGYGL*