AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657340 MtrunA17_Chr8g0379561 95.556 225 9 1 1 225 2 225 3.18e-158 437
Msa0657340 MtrunA17_Chr8g0379581 63.839 224 80 1 1 224 1 223 1.94e-95 278
Msa0657340 MtrunA17_Chr6g0483141 52.885 208 95 2 5 211 3 208 1.28e-71 217
Msa0657340 MtrunA17_Chr7g0240681 48.113 212 106 3 2 211 4 213 1.03e-63 197
Msa0657340 MtrunA17_Chr4g0008781 49.048 210 106 1 2 211 5 213 1.56e-62 194
Msa0657340 MtrunA17_Chr7g0240691 43.111 225 124 3 2 224 34 256 4.56e-61 192
Msa0657340 MtrunA17_Chr1g0196771 46.330 218 113 3 4 219 2 217 5.68e-60 188
Msa0657340 MtrunA17_Chr3g0132581 46.890 209 110 1 1 209 1 208 7.75e-60 187
Msa0657340 MtrunA17_Chr7g0240561 45.370 216 115 3 1 215 3 216 1.03e-59 187
Msa0657340 MtrunA17_Chr7g0240641 44.651 215 115 4 3 215 4 216 2.39e-59 186
Msa0657340 MtrunA17_Chr4g0008791 45.249 221 118 3 5 224 7 225 3.24e-59 186
Msa0657340 MtrunA17_Chr7g0240631 44.186 215 116 4 3 215 4 216 9.20e-59 185
Msa0657340 MtrunA17_Chr7g0240581 46.512 215 112 3 2 215 4 216 1.25e-57 182
Msa0657340 MtrunA17_Chr1g0212301 45.413 218 115 3 5 219 3 219 2.45e-56 178
Msa0657340 MtrunA17_Chr7g0240611 41.892 222 122 4 4 224 6 221 7.01e-56 177
Msa0657340 MtrunA17_Chr7g0240551 45.540 213 113 3 4 215 6 216 8.65e-56 177
Msa0657340 MtrunA17_Chr7g0240511 44.091 220 115 4 4 222 6 218 2.62e-54 173
Msa0657340 MtrunA17_Chr1g0196661 43.636 220 121 2 5 222 3 221 1.24e-53 172
Msa0657340 MtrunA17_Chr7g0240531 44.037 218 117 5 4 219 6 220 3.98e-53 170
Msa0657340 MtrunA17_Chr7g0240671 44.444 207 108 4 6 211 5 205 9.72e-53 169
Msa0657340 MtrunA17_Chr7g0240541 43.318 217 120 3 4 219 6 220 2.13e-51 166
Msa0657340 MtrunA17_Chr7g0240651 38.117 223 131 4 3 224 5 221 7.64e-51 164
Msa0657340 MtrunA17_Chr5g0417011 41.315 213 118 3 3 209 5 216 1.46e-50 164
Msa0657340 MtrunA17_Chr1g0196691 43.602 211 115 3 5 212 28 237 1.86e-50 164
Msa0657340 MtrunA17_Chr2g0312771 44.878 205 109 3 5 208 4 205 2.40e-50 163
Msa0657340 MtrunA17_Chr7g0240521 45.701 221 107 5 4 218 13 226 3.78e-50 163
Msa0657340 MtrunA17_Chr4g0029341 43.172 227 111 5 1 218 1 218 7.92e-50 162
Msa0657340 MtrunA17_Chr2g0312751 44.390 205 110 3 5 208 4 205 2.52e-49 160
Msa0657340 MtrunA17_Chr2g0312721 43.694 222 117 4 5 225 4 218 6.60e-49 159
Msa0657340 MtrunA17_Chr2g0312781 44.118 204 110 3 6 208 22 222 8.03e-48 157
Msa0657340 MtrunA17_Chr2g0312791 39.815 216 126 3 5 218 4 217 4.42e-47 155
Msa0657340 MtrunA17_Chr1g0196711 40.278 216 126 2 5 218 3 217 6.85e-46 152
Msa0657340 MtrunA17_Chr1g0196721 42.788 208 116 2 6 211 3 209 7.76e-46 151
Msa0657340 MtrunA17_Chr7g0240661 42.927 205 110 4 4 207 6 204 1.80e-45 150
Msa0657340 MtrunA17_Chr2g0312731 40.488 205 118 3 5 208 4 205 3.51e-45 150
Msa0657340 MtrunA17_Chr5g0415411 38.182 220 127 4 1 212 1 219 1.32e-44 149
Msa0657340 MtrunA17_Chr2g0312811 44.385 187 97 5 5 187 4 187 3.54e-43 145
Msa0657340 MtrunA17_Chr3g0107731 45.109 184 98 2 5 187 9 190 3.94e-43 145
Msa0657340 MtrunA17_Chr2g0312681 41.935 186 103 4 4 187 3 185 4.42e-42 142
Msa0657340 MtrunA17_Chr8g0363751 41.014 217 119 6 1 209 1 216 7.08e-42 142
Msa0657340 MtrunA17_Chr4g0069471 45.902 183 93 3 5 185 25 203 9.64e-42 140
Msa0657340 MtrunA17_Chr8g0357241 42.021 188 106 2 4 190 3 188 1.43e-41 140
Msa0657340 MtrunA17_Chr8g0357211 48.387 155 79 1 4 157 3 157 3.65e-41 139
Msa0657340 MtrunA17_Chr3g0107741 43.085 188 104 2 1 187 5 190 2.00e-39 135
Msa0657340 MtrunA17_Chr2g0312691 40.000 210 118 6 4 211 3 206 3.18e-37 129
Msa0657340 MtrunA17_Chr2g0312711 41.622 185 104 3 4 187 3 184 1.02e-36 128
Msa0657340 MtrunA17_Chr5g0433801 39.037 187 111 2 2 187 3 187 1.66e-36 127
Msa0657340 MtrunA17_Chr8g0391631 45.912 159 78 5 1 151 17 175 1.78e-33 118
Msa0657340 MtrunA17_Chr2g0313561 48.649 74 34 3 48 118 1 73 1.87e-17 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657340 AT2G29420.1 44.037 218 121 1 3 220 7 223 7.23e-64 198
Msa0657340 AT2G29460.1 46.188 223 116 3 2 222 4 224 1.99e-62 194
Msa0657340 AT2G29490.1 48.571 210 104 3 2 209 4 211 5.70e-62 193
Msa0657340 AT2G29480.1 45.740 223 117 3 2 222 4 224 5.76e-62 193
Msa0657340 AT2G29450.1 46.847 222 113 4 4 222 5 224 1.46e-60 189
Msa0657340 AT2G29440.1 45.740 223 117 3 2 222 3 223 7.23e-60 188
Msa0657340 AT3G09270.1 46.667 210 109 3 2 209 3 211 2.12e-58 184
Msa0657340 AT2G29470.1 45.498 211 110 4 2 209 4 212 2.10e-55 176
Msa0657340 AT1G17170.1 42.791 215 118 4 5 218 4 214 1.94e-49 161
Msa0657340 AT1G59670.1 43.662 213 111 5 4 208 5 216 1.28e-47 157
Msa0657340 AT1G17180.1 41.148 209 119 3 5 212 4 209 2.28e-47 156
Msa0657340 AT1G10370.1 42.081 221 120 4 1 214 1 220 4.65e-47 155
Msa0657340 AT1G59700.1 43.564 202 106 4 4 197 5 206 6.38e-46 152
Msa0657340 AT1G78370.1 39.806 206 120 3 8 212 7 209 1.69e-45 151
Msa0657340 AT1G17190.1 40.359 223 129 3 1 222 1 220 4.02e-45 150
Msa0657340 AT1G78380.1 42.000 200 103 3 4 202 3 190 5.06e-45 150
Msa0657340 AT1G78340.1 43.169 183 101 3 5 186 4 184 3.26e-44 147
Msa0657340 AT1G53680.1 43.617 188 101 3 3 187 5 190 2.94e-43 145
Msa0657340 AT1G74590.1 38.164 207 122 3 13 214 15 220 2.78e-42 143
Msa0657340 AT1G78360.1 39.908 218 126 5 5 220 4 218 8.30e-42 141
Msa0657340 AT1G78320.1 38.426 216 127 4 4 216 3 215 1.02e-41 141
Msa0657340 AT3G43800.1 41.627 209 115 4 1 204 1 207 1.94e-41 141
Msa0657340 AT1G27130.1 37.500 224 131 6 2 217 3 225 2.12e-40 138
Msa0657340 AT5G62480.1 37.037 216 125 4 14 220 17 230 3.85e-40 138
Msa0657340 AT1G10360.1 38.725 204 118 3 1 197 1 204 2.84e-39 135
Msa0657340 AT1G69920.1 37.668 223 126 7 3 215 32 251 1.41e-38 134
Msa0657340 AT1G27140.1 35.841 226 135 5 2 218 3 227 8.01e-38 132
Msa0657340 AT1G69930.1 33.784 222 140 4 2 217 9 229 1.04e-37 131
Msa0657340 AT1G78320.2 32.558 215 114 4 4 216 3 188 6.59e-29 107
Msa0657340 AT5G62480.2 29.767 215 116 4 14 220 17 204 1.98e-25 99.4
Msa0657340 AT5G62480.3 29.767 215 115 4 14 220 17 203 3.65e-25 98.6

Find 65 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATTTGGGAAGAAAT+TGG 0.111299 4_3:+66978418 Msa0657340:CDS
GTGACTCTGCAATTGATTTC+TGG 0.174226 4_3:-66976949 None:intergenic
TTCAACTCATCGTGGTTAAT+TGG 0.238245 4_3:+66978588 Msa0657340:exon
AAAGTTAGAAGAGGAGATAA+AGG 0.273945 4_3:+66978327 Msa0657340:CDS
GACCCAATTTCTTCCCAAAT+TGG 0.274164 4_3:-66978421 None:intergenic
ATAAAGGGAAAGAAATTCTT+TGG 0.305857 4_3:+66978343 Msa0657340:CDS
AAAGTTCCGGTTCTTGTTCA+TGG 0.322486 4_3:+66976926 Msa0657340:CDS
AAAGATCTCAGGCTCGCTTT+TGG 0.326368 4_3:+66977038 Msa0657340:CDS
CAACGTTAAATAAATTAGTT+TGG 0.330613 4_3:+66978707 Msa0657340:three_prime_UTR
TATAGCTTGCGCTGGGTTCA+TGG 0.334296 4_3:+66978239 Msa0657340:intron
AATGTCCTTCCATCTCTTCA+TGG 0.338522 4_3:+66978467 Msa0657340:CDS
AGTTAAGCAGCTTCACATCT+TGG 0.361900 4_3:-66976775 None:intergenic
ACCGGAACTTTCTTATGAAT+CGG 0.380626 4_3:-66976914 None:intergenic
GAAAGATGCGGCGACACTTA+TGG 0.384795 4_3:+66978756 Msa0657340:three_prime_UTR
TTCCAATTTGGGAAGAAATT+GGG 0.398944 4_3:+66978419 Msa0657340:CDS
CCCGATTCATAAGAAAGTTC+CGG 0.414826 4_3:+66976913 Msa0657340:CDS
TTATTGCCACCGTCGCATAA+AGG 0.420018 4_3:+66978558 Msa0657340:CDS
ACCTTGATCTTGCTCTTGGA+TGG 0.423990 4_3:+66978383 Msa0657340:CDS
TTGGAAGCCTTGTAGATGAA+TGG 0.427376 4_3:+66978726 Msa0657340:three_prime_UTR
TAAAGAATCATTTCATCCCT+TGG 0.429286 4_3:-66978538 None:intergenic
CCGGAACTTTCTTATGAATC+GGG 0.433313 4_3:-66976913 None:intergenic
TTCTGGCCATGAACAAGAAC+CGG 0.434336 4_3:-66976932 None:intergenic
TGGATTGCATTGATTAAGAA+AGG 0.435401 4_3:+66978259 Msa0657340:CDS
GGCTAAGTTATCTGATGAAA+AGG 0.437582 4_3:+66977060 Msa0657340:CDS
CATTCAACTCTACGACCAAC+TGG 0.446242 4_3:-66976809 None:intergenic
GGGTACCTTGATCTTGCTCT+TGG 0.453072 4_3:+66978379 Msa0657340:CDS
TCTTTGGAGGGGACACTATC+GGG 0.454808 4_3:+66978359 Msa0657340:CDS
TAAATTATTATAGCTTGCGC+TGG 0.466026 4_3:+66978231 Msa0657340:intron
TGATTAAGAAAGGTGATGAA+TGG 0.474122 4_3:+66978269 Msa0657340:CDS
AAAGGAGGCAAGAGAAATCA+TGG 0.475218 4_3:+66978303 Msa0657340:CDS
TTCTTTGGAGGGGACACTAT+CGG 0.475345 4_3:+66978358 Msa0657340:CDS
GATTAAGAAAGGTGATGAAT+GGG 0.480475 4_3:+66978270 Msa0657340:CDS
AAGTTAGAAGAGGAGATAAA+GGG 0.491500 4_3:+66978328 Msa0657340:CDS
GAAAGGTGATGAATGGGAAA+AGG 0.495659 4_3:+66978276 Msa0657340:CDS
TGAGATCTTTGATAAGGATC+AGG 0.498359 4_3:-66977025 None:intergenic
AGTTGGTCGTAGAGTTGAAT+GGG 0.508405 4_3:+66976811 Msa0657340:CDS
CAGTTGGTCGTAGAGTTGAA+TGG 0.517051 4_3:+66976810 Msa0657340:CDS
TGATCCTTATCAAAGATCTC+AGG 0.520135 4_3:+66977027 Msa0657340:CDS
CGAGCCTGAGATCTTTGATA+AGG 0.520914 4_3:-66977031 None:intergenic
AAACACTCCTTGATGATGAT+AGG 0.524604 4_3:-66978511 None:intergenic
ATAATTTCCATTCATCTACA+AGG 0.525093 4_3:-66978733 None:intergenic
AATCATGGAAAAGTTAGAAG+AGG 0.531445 4_3:+66978318 Msa0657340:CDS
AGGGAAAGAAATTCTTTGGA+GGG 0.536580 4_3:+66978347 Msa0657340:CDS
ATTGATCTTCCATGAAGAGA+TGG 0.543546 4_3:-66978476 None:intergenic
TGAATGGGAAAAGGCTCTAA+AGG 0.545680 4_3:+66978285 Msa0657340:CDS
TCCATCCAAGAGCAAGATCA+AGG 0.557485 4_3:-66978384 None:intergenic
TAAGGATCAGGAGGCAGCAA+TGG 0.562517 4_3:-66977013 None:intergenic
CAAGGAGTGTTTGCCACCAA+GGG 0.564625 4_3:+66978522 Msa0657340:CDS
TGAATGGGCTCTAAAACTCA+AGG 0.568264 4_3:+66976826 Msa0657340:CDS
TCAAGGAGTGTTTGCCACCA+AGG 0.571195 4_3:+66978521 Msa0657340:CDS
ACTCCTTGATGATGATAGGA+TGG 0.572678 4_3:-66978507 None:intergenic
TTGAATACATTGATGAAACA+TGG 0.575829 4_3:+66976981 Msa0657340:CDS
AAGGGAAAGAAATTCTTTGG+AGG 0.576725 4_3:+66978346 Msa0657340:CDS
GAGCCATCCTATCATCATCA+AGG 0.581782 4_3:+66978504 Msa0657340:CDS
AAATTATTATAGCTTGCGCT+GGG 0.589664 4_3:+66978232 Msa0657340:intron
AAGAATACTCCTTTATGCGA+CGG 0.595491 4_3:-66978567 None:intergenic
AATGGAAATTATGAAAGATG+CGG 0.606272 4_3:+66978744 Msa0657340:three_prime_UTR
GGGAAAGAAATTCTTTGGAG+GGG 0.609810 4_3:+66978348 Msa0657340:CDS
ATCTTCCATGAAGAGATGGA+AGG 0.621011 4_3:-66978472 None:intergenic
AGAATCATTTCATCCCTTGG+TGG 0.643379 4_3:-66978535 None:intergenic
GAATGGGCTCTAAAACTCAA+GGG 0.646090 4_3:+66976827 Msa0657340:CDS
GATCTTTGATAAGGATCAGG+AGG 0.658191 4_3:-66977022 None:intergenic
ATGGGAAAAGGCTCTAAAGG+AGG 0.677413 4_3:+66978288 Msa0657340:CDS
AATACTCCTTTATGCGACGG+TGG 0.688837 4_3:-66978564 None:intergenic
GAGTATTCTTCAACTCATCG+TGG 0.696267 4_3:+66978580 Msa0657340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAAAAATATGTTTC+GGG - chr4_3:66977412-66977431 None:intergenic 10.0%
!!! CATATTTTTTTTTATATGTT+AGG + chr4_3:66977416-66977435 Msa0657340:intron 10.0%
!!! TCACAAAAAATTTAAATTTT+GGG - chr4_3:66977611-66977630 None:intergenic 10.0%
!!! TTCACAAAAAATTTAAATTT+TGG - chr4_3:66977612-66977631 None:intergenic 10.0%
!!! TCAATATAAAACTATTTTAA+AGG - chr4_3:66978009-66978028 None:intergenic 10.0%
!! TATAAAAAAAAATATGTTTC+GGG - chr4_3:66977412-66977431 None:intergenic 10.0%
!!! CATATTTTTTTTTATATGTT+AGG + chr4_3:66977416-66977435 Msa0657340:intron 10.0%
!!! TCACAAAAAATTTAAATTTT+GGG - chr4_3:66977611-66977630 None:intergenic 10.0%
!!! TTCACAAAAAATTTAAATTT+TGG - chr4_3:66977612-66977631 None:intergenic 10.0%
!!! TCAATATAAAACTATTTTAA+AGG - chr4_3:66978009-66978028 None:intergenic 10.0%
!!! AATAATTGTTTTATGAACTT+AGG + chr4_3:66977277-66977296 Msa0657340:intron 15.0%
!! AATCCTTAAAAATTTAAACA+GGG + chr4_3:66977630-66977649 Msa0657340:intron 15.0%
!! TAATTTACACATACAAAAAT+AGG - chr4_3:66978218-66978237 None:intergenic 15.0%
!!! AATAATTGTTTTATGAACTT+AGG + chr4_3:66977277-66977296 Msa0657340:intron 15.0%
!! AATCCTTAAAAATTTAAACA+GGG + chr4_3:66977630-66977649 Msa0657340:intron 15.0%
!! TAATTTACACATACAAAAAT+AGG - chr4_3:66978218-66978237 None:intergenic 15.0%
!! TATGTTGTTCAAATTTAACT+AGG + chr4_3:66977106-66977125 Msa0657340:intron 20.0%
!!! AAAATTATGTTTCCTTTTTG+AGG + chr4_3:66977176-66977195 Msa0657340:intron 20.0%
!!! TTCATTTTAGTGTCTTATTT+AGG + chr4_3:66977575-66977594 Msa0657340:intron 20.0%
!! GAATCCTTAAAAATTTAAAC+AGG + chr4_3:66977629-66977648 Msa0657340:intron 20.0%
!! TATCTCTTGAATTTATTAGA+TGG - chr4_3:66977800-66977819 None:intergenic 20.0%
!! CAACGTTAAATAAATTAGTT+TGG + chr4_3:66978707-66978726 Msa0657340:three_prime_UTR 20.0%
!! TATGTTGTTCAAATTTAACT+AGG + chr4_3:66977106-66977125 Msa0657340:intron 20.0%
!!! AAAATTATGTTTCCTTTTTG+AGG + chr4_3:66977176-66977195 Msa0657340:intron 20.0%
!!! TTCATTTTAGTGTCTTATTT+AGG + chr4_3:66977575-66977594 Msa0657340:intron 20.0%
!! GAATCCTTAAAAATTTAAAC+AGG + chr4_3:66977629-66977648 Msa0657340:intron 20.0%
!! TATCTCTTGAATTTATTAGA+TGG - chr4_3:66977800-66977819 None:intergenic 20.0%
!! CAACGTTAAATAAATTAGTT+TGG + chr4_3:66978707-66978726 Msa0657340:three_prime_UTR 20.0%
! TTGAATACATTGATGAAACA+TGG + chr4_3:66976981-66977000 Msa0657340:CDS 25.0%
! AAATACTACGTTTCTTTCAA+AGG + chr4_3:66977146-66977165 Msa0657340:intron 25.0%
! AAAATATTCTTGCCTCAAAA+AGG - chr4_3:66977191-66977210 None:intergenic 25.0%
!!! TTGAGGCAAGAATATTTTTT+TGG + chr4_3:66977193-66977212 Msa0657340:intron 25.0%
!!! TTTTTTTGGTGTTAATCATC+CGG + chr4_3:66977207-66977226 Msa0657340:intron 25.0%
! TTAACAAAAATCACCTTAGT+GGG - chr4_3:66977550-66977569 None:intergenic 25.0%
! ATTAACAAAAATCACCTTAG+TGG - chr4_3:66977551-66977570 None:intergenic 25.0%
!!! AGTGTCTTATTTAGGTTTTT+TGG + chr4_3:66977583-66977602 Msa0657340:intron 25.0%
!!! GTGTCTTATTTAGGTTTTTT+GGG + chr4_3:66977584-66977603 Msa0657340:intron 25.0%
!!! TGTCTTATTTAGGTTTTTTG+GGG + chr4_3:66977585-66977604 Msa0657340:intron 25.0%
! ATAAAGGGAAAGAAATTCTT+TGG + chr4_3:66978343-66978362 Msa0657340:CDS 25.0%
! ATAATTTCCATTCATCTACA+AGG - chr4_3:66978736-66978755 None:intergenic 25.0%
! AATGGAAATTATGAAAGATG+CGG + chr4_3:66978744-66978763 Msa0657340:three_prime_UTR 25.0%
! TTGAATACATTGATGAAACA+TGG + chr4_3:66976981-66977000 Msa0657340:CDS 25.0%
! AAATACTACGTTTCTTTCAA+AGG + chr4_3:66977146-66977165 Msa0657340:intron 25.0%
! AAAATATTCTTGCCTCAAAA+AGG - chr4_3:66977191-66977210 None:intergenic 25.0%
!!! TTGAGGCAAGAATATTTTTT+TGG + chr4_3:66977193-66977212 Msa0657340:intron 25.0%
!!! TTTTTTTGGTGTTAATCATC+CGG + chr4_3:66977207-66977226 Msa0657340:intron 25.0%
! TTAACAAAAATCACCTTAGT+GGG - chr4_3:66977550-66977569 None:intergenic 25.0%
! ATTAACAAAAATCACCTTAG+TGG - chr4_3:66977551-66977570 None:intergenic 25.0%
!!! AGTGTCTTATTTAGGTTTTT+TGG + chr4_3:66977583-66977602 Msa0657340:intron 25.0%
!!! GTGTCTTATTTAGGTTTTTT+GGG + chr4_3:66977584-66977603 Msa0657340:intron 25.0%
!!! TGTCTTATTTAGGTTTTTTG+GGG + chr4_3:66977585-66977604 Msa0657340:intron 25.0%
! ATAAAGGGAAAGAAATTCTT+TGG + chr4_3:66978343-66978362 Msa0657340:CDS 25.0%
! ATAATTTCCATTCATCTACA+AGG - chr4_3:66978736-66978755 None:intergenic 25.0%
! AATGGAAATTATGAAAGATG+CGG + chr4_3:66978744-66978763 Msa0657340:three_prime_UTR 25.0%
! AACTTTTTATTGAGTCCAGT+TGG + chr4_3:66976794-66976813 Msa0657340:CDS 30.0%
ATTTAACTAGGCTTATTCTG+AGG + chr4_3:66977118-66977137 Msa0657340:intron 30.0%
TGTTAATCATCCGGTTAATA+GGG + chr4_3:66977216-66977235 Msa0657340:intron 30.0%
CATGATCAATATGTGTTTAG+TGG + chr4_3:66977304-66977323 Msa0657340:intron 30.0%
TCATTACTTGAGTACAATCA+GGG + chr4_3:66977330-66977349 Msa0657340:intron 30.0%
ATAAGATTTCAAACAAGAGC+CGG + chr4_3:66977472-66977491 Msa0657340:intron 30.0%
! TGGCCCTGTTTAAATTTTTA+AGG - chr4_3:66977636-66977655 None:intergenic 30.0%
TAACCAAACAATTGTACTCA+GGG - chr4_3:66977677-66977696 None:intergenic 30.0%
GATGTTAATTATTCCATTCC+AGG + chr4_3:66977889-66977908 Msa0657340:intron 30.0%
! GCCTAATATGTTGATAGAAA+CGG + chr4_3:66978064-66978083 Msa0657340:intron 30.0%
ACCGTTTCTATCAACATATT+AGG - chr4_3:66978068-66978087 None:intergenic 30.0%
! TAAATTATTATAGCTTGCGC+TGG + chr4_3:66978231-66978250 Msa0657340:intron 30.0%
! AAATTATTATAGCTTGCGCT+GGG + chr4_3:66978232-66978251 Msa0657340:intron 30.0%
!! TGGATTGCATTGATTAAGAA+AGG + chr4_3:66978259-66978278 Msa0657340:CDS 30.0%
TGATTAAGAAAGGTGATGAA+TGG + chr4_3:66978269-66978288 Msa0657340:CDS 30.0%
GATTAAGAAAGGTGATGAAT+GGG + chr4_3:66978270-66978289 Msa0657340:CDS 30.0%
AATCATGGAAAAGTTAGAAG+AGG + chr4_3:66978318-66978337 Msa0657340:CDS 30.0%
AAAGTTAGAAGAGGAGATAA+AGG + chr4_3:66978327-66978346 Msa0657340:CDS 30.0%
AAGTTAGAAGAGGAGATAAA+GGG + chr4_3:66978328-66978347 Msa0657340:CDS 30.0%
!! TCACTTGTTTTCTTCCAATT+TGG + chr4_3:66978407-66978426 Msa0657340:CDS 30.0%
!! CACTTGTTTTCTTCCAATTT+GGG + chr4_3:66978408-66978427 Msa0657340:CDS 30.0%
TTCCAATTTGGGAAGAAATT+GGG + chr4_3:66978419-66978438 Msa0657340:CDS 30.0%
!! AGATGGAAGGACATTTTAAT+GGG - chr4_3:66978462-66978481 None:intergenic 30.0%
TAAAGAATCATTTCATCCCT+TGG - chr4_3:66978541-66978560 None:intergenic 30.0%
! AACTTTTTATTGAGTCCAGT+TGG + chr4_3:66976794-66976813 Msa0657340:CDS 30.0%
ATTTAACTAGGCTTATTCTG+AGG + chr4_3:66977118-66977137 Msa0657340:intron 30.0%
TGTTAATCATCCGGTTAATA+GGG + chr4_3:66977216-66977235 Msa0657340:intron 30.0%
CATGATCAATATGTGTTTAG+TGG + chr4_3:66977304-66977323 Msa0657340:intron 30.0%
TCATTACTTGAGTACAATCA+GGG + chr4_3:66977330-66977349 Msa0657340:intron 30.0%
ATAAGATTTCAAACAAGAGC+CGG + chr4_3:66977472-66977491 Msa0657340:intron 30.0%
! TGGCCCTGTTTAAATTTTTA+AGG - chr4_3:66977636-66977655 None:intergenic 30.0%
TAACCAAACAATTGTACTCA+GGG - chr4_3:66977677-66977696 None:intergenic 30.0%
GATGTTAATTATTCCATTCC+AGG + chr4_3:66977889-66977908 Msa0657340:intron 30.0%
! GCCTAATATGTTGATAGAAA+CGG + chr4_3:66978064-66978083 Msa0657340:intron 30.0%
ACCGTTTCTATCAACATATT+AGG - chr4_3:66978068-66978087 None:intergenic 30.0%
! TAAATTATTATAGCTTGCGC+TGG + chr4_3:66978231-66978250 Msa0657340:intron 30.0%
! AAATTATTATAGCTTGCGCT+GGG + chr4_3:66978232-66978251 Msa0657340:intron 30.0%
!! TGGATTGCATTGATTAAGAA+AGG + chr4_3:66978259-66978278 Msa0657340:CDS 30.0%
TGATTAAGAAAGGTGATGAA+TGG + chr4_3:66978269-66978288 Msa0657340:CDS 30.0%
GATTAAGAAAGGTGATGAAT+GGG + chr4_3:66978270-66978289 Msa0657340:CDS 30.0%
AATCATGGAAAAGTTAGAAG+AGG + chr4_3:66978318-66978337 Msa0657340:CDS 30.0%
AAAGTTAGAAGAGGAGATAA+AGG + chr4_3:66978327-66978346 Msa0657340:CDS 30.0%
AAGTTAGAAGAGGAGATAAA+GGG + chr4_3:66978328-66978347 Msa0657340:CDS 30.0%
!! TCACTTGTTTTCTTCCAATT+TGG + chr4_3:66978407-66978426 Msa0657340:CDS 30.0%
!! CACTTGTTTTCTTCCAATTT+GGG + chr4_3:66978408-66978427 Msa0657340:CDS 30.0%
TTCCAATTTGGGAAGAAATT+GGG + chr4_3:66978419-66978438 Msa0657340:CDS 30.0%
!! AGATGGAAGGACATTTTAAT+GGG - chr4_3:66978462-66978481 None:intergenic 30.0%
TAAAGAATCATTTCATCCCT+TGG - chr4_3:66978541-66978560 None:intergenic 30.0%
ACCGGAACTTTCTTATGAAT+CGG - chr4_3:66976917-66976936 None:intergenic 35.0%
TGAGATCTTTGATAAGGATC+AGG - chr4_3:66977028-66977047 None:intergenic 35.0%
TGATCCTTATCAAAGATCTC+AGG + chr4_3:66977027-66977046 Msa0657340:CDS 35.0%
GGCTAAGTTATCTGATGAAA+AGG + chr4_3:66977060-66977079 Msa0657340:CDS 35.0%
GTGTTAATCATCCGGTTAAT+AGG + chr4_3:66977215-66977234 Msa0657340:intron 35.0%
GTTAATCATCCGGTTAATAG+GGG + chr4_3:66977217-66977236 Msa0657340:intron 35.0%
CTCATTACTTGAGTACAATC+AGG + chr4_3:66977329-66977348 Msa0657340:intron 35.0%
!! GGCCAACAAATTTGTTAAGA+CGG + chr4_3:66977651-66977670 Msa0657340:intron 35.0%
CTAACCAAACAATTGTACTC+AGG - chr4_3:66977678-66977697 None:intergenic 35.0%
ACAATACTTGAATGTATGCC+TGG - chr4_3:66977910-66977929 None:intergenic 35.0%
AAGGGAAAGAAATTCTTTGG+AGG + chr4_3:66978346-66978365 Msa0657340:CDS 35.0%
AGGGAAAGAAATTCTTTGGA+GGG + chr4_3:66978347-66978366 Msa0657340:CDS 35.0%
CTTCCAATTTGGGAAGAAAT+TGG + chr4_3:66978418-66978437 Msa0657340:CDS 35.0%
! GAGATGGAAGGACATTTTAA+TGG - chr4_3:66978463-66978482 None:intergenic 35.0%
ATTGATCTTCCATGAAGAGA+TGG - chr4_3:66978479-66978498 None:intergenic 35.0%
!! AAACACTCCTTGATGATGAT+AGG - chr4_3:66978514-66978533 None:intergenic 35.0%
AAGAATACTCCTTTATGCGA+CGG - chr4_3:66978570-66978589 None:intergenic 35.0%
TTCAACTCATCGTGGTTAAT+TGG + chr4_3:66978588-66978607 Msa0657340:exon 35.0%
ACCGGAACTTTCTTATGAAT+CGG - chr4_3:66976917-66976936 None:intergenic 35.0%
TGAGATCTTTGATAAGGATC+AGG - chr4_3:66977028-66977047 None:intergenic 35.0%
TGATCCTTATCAAAGATCTC+AGG + chr4_3:66977027-66977046 Msa0657340:CDS 35.0%
GGCTAAGTTATCTGATGAAA+AGG + chr4_3:66977060-66977079 Msa0657340:CDS 35.0%
GTGTTAATCATCCGGTTAAT+AGG + chr4_3:66977215-66977234 Msa0657340:intron 35.0%
GTTAATCATCCGGTTAATAG+GGG + chr4_3:66977217-66977236 Msa0657340:intron 35.0%
CTCATTACTTGAGTACAATC+AGG + chr4_3:66977329-66977348 Msa0657340:intron 35.0%
!! GGCCAACAAATTTGTTAAGA+CGG + chr4_3:66977651-66977670 Msa0657340:intron 35.0%
CTAACCAAACAATTGTACTC+AGG - chr4_3:66977678-66977697 None:intergenic 35.0%
ACAATACTTGAATGTATGCC+TGG - chr4_3:66977910-66977929 None:intergenic 35.0%
AAGGGAAAGAAATTCTTTGG+AGG + chr4_3:66978346-66978365 Msa0657340:CDS 35.0%
AGGGAAAGAAATTCTTTGGA+GGG + chr4_3:66978347-66978366 Msa0657340:CDS 35.0%
CTTCCAATTTGGGAAGAAAT+TGG + chr4_3:66978418-66978437 Msa0657340:CDS 35.0%
! GAGATGGAAGGACATTTTAA+TGG - chr4_3:66978463-66978482 None:intergenic 35.0%
ATTGATCTTCCATGAAGAGA+TGG - chr4_3:66978479-66978498 None:intergenic 35.0%
!! AAACACTCCTTGATGATGAT+AGG - chr4_3:66978514-66978533 None:intergenic 35.0%
AAGAATACTCCTTTATGCGA+CGG - chr4_3:66978570-66978589 None:intergenic 35.0%
TTCAACTCATCGTGGTTAAT+TGG + chr4_3:66978588-66978607 Msa0657340:exon 35.0%
AGTTAAGCAGCTTCACATCT+TGG - chr4_3:66976778-66976797 None:intergenic 40.0%
AGTTGGTCGTAGAGTTGAAT+GGG + chr4_3:66976811-66976830 Msa0657340:CDS 40.0%
!! TGAATGGGCTCTAAAACTCA+AGG + chr4_3:66976826-66976845 Msa0657340:CDS 40.0%
!! GAATGGGCTCTAAAACTCAA+GGG + chr4_3:66976827-66976846 Msa0657340:CDS 40.0%
CCGGAACTTTCTTATGAATC+GGG - chr4_3:66976916-66976935 None:intergenic 40.0%
CCCGATTCATAAGAAAGTTC+CGG + chr4_3:66976913-66976932 Msa0657340:CDS 40.0%
AAAGTTCCGGTTCTTGTTCA+TGG + chr4_3:66976926-66976945 Msa0657340:CDS 40.0%
! GTGACTCTGCAATTGATTTC+TGG - chr4_3:66976952-66976971 None:intergenic 40.0%
GATCTTTGATAAGGATCAGG+AGG - chr4_3:66977025-66977044 None:intergenic 40.0%
TTTGCTTGTGTTTGTGGTTG+TGG + chr4_3:66977516-66977535 Msa0657340:intron 40.0%
TTGCTTGTGTTTGTGGTTGT+GGG + chr4_3:66977517-66977536 Msa0657340:intron 40.0%
GGCCGTCTTAACAAATTTGT+TGG - chr4_3:66977656-66977675 None:intergenic 40.0%
ACTTGAATGTATGCCTGGAA+TGG - chr4_3:66977905-66977924 None:intergenic 40.0%
GAAAGGTGATGAATGGGAAA+AGG + chr4_3:66978276-66978295 Msa0657340:CDS 40.0%
! TGAATGGGAAAAGGCTCTAA+AGG + chr4_3:66978285-66978304 Msa0657340:CDS 40.0%
AAAGGAGGCAAGAGAAATCA+TGG + chr4_3:66978303-66978322 Msa0657340:CDS 40.0%
! GGGAAAGAAATTCTTTGGAG+GGG + chr4_3:66978348-66978367 Msa0657340:CDS 40.0%
GACCCAATTTCTTCCCAAAT+TGG - chr4_3:66978424-66978443 None:intergenic 40.0%
AATGTCCTTCCATCTCTTCA+TGG + chr4_3:66978467-66978486 Msa0657340:CDS 40.0%
ATCTTCCATGAAGAGATGGA+AGG - chr4_3:66978475-66978494 None:intergenic 40.0%
!! ACTCCTTGATGATGATAGGA+TGG - chr4_3:66978510-66978529 None:intergenic 40.0%
AGAATCATTTCATCCCTTGG+TGG - chr4_3:66978538-66978557 None:intergenic 40.0%
GAGTATTCTTCAACTCATCG+TGG + chr4_3:66978580-66978599 Msa0657340:CDS 40.0%
! TTGGAAGCCTTGTAGATGAA+TGG + chr4_3:66978726-66978745 Msa0657340:three_prime_UTR 40.0%
AGTTAAGCAGCTTCACATCT+TGG - chr4_3:66976778-66976797 None:intergenic 40.0%
AGTTGGTCGTAGAGTTGAAT+GGG + chr4_3:66976811-66976830 Msa0657340:CDS 40.0%
!! TGAATGGGCTCTAAAACTCA+AGG + chr4_3:66976826-66976845 Msa0657340:CDS 40.0%
!! GAATGGGCTCTAAAACTCAA+GGG + chr4_3:66976827-66976846 Msa0657340:CDS 40.0%
CCGGAACTTTCTTATGAATC+GGG - chr4_3:66976916-66976935 None:intergenic 40.0%
CCCGATTCATAAGAAAGTTC+CGG + chr4_3:66976913-66976932 Msa0657340:CDS 40.0%
AAAGTTCCGGTTCTTGTTCA+TGG + chr4_3:66976926-66976945 Msa0657340:CDS 40.0%
! GTGACTCTGCAATTGATTTC+TGG - chr4_3:66976952-66976971 None:intergenic 40.0%
GATCTTTGATAAGGATCAGG+AGG - chr4_3:66977025-66977044 None:intergenic 40.0%
TTTGCTTGTGTTTGTGGTTG+TGG + chr4_3:66977516-66977535 Msa0657340:intron 40.0%
TTGCTTGTGTTTGTGGTTGT+GGG + chr4_3:66977517-66977536 Msa0657340:intron 40.0%
GGCCGTCTTAACAAATTTGT+TGG - chr4_3:66977656-66977675 None:intergenic 40.0%
ACTTGAATGTATGCCTGGAA+TGG - chr4_3:66977905-66977924 None:intergenic 40.0%
GAAAGGTGATGAATGGGAAA+AGG + chr4_3:66978276-66978295 Msa0657340:CDS 40.0%
! TGAATGGGAAAAGGCTCTAA+AGG + chr4_3:66978285-66978304 Msa0657340:CDS 40.0%
AAAGGAGGCAAGAGAAATCA+TGG + chr4_3:66978303-66978322 Msa0657340:CDS 40.0%
! GGGAAAGAAATTCTTTGGAG+GGG + chr4_3:66978348-66978367 Msa0657340:CDS 40.0%
GACCCAATTTCTTCCCAAAT+TGG - chr4_3:66978424-66978443 None:intergenic 40.0%
AATGTCCTTCCATCTCTTCA+TGG + chr4_3:66978467-66978486 Msa0657340:CDS 40.0%
ATCTTCCATGAAGAGATGGA+AGG - chr4_3:66978475-66978494 None:intergenic 40.0%
!! ACTCCTTGATGATGATAGGA+TGG - chr4_3:66978510-66978529 None:intergenic 40.0%
AGAATCATTTCATCCCTTGG+TGG - chr4_3:66978538-66978557 None:intergenic 40.0%
GAGTATTCTTCAACTCATCG+TGG + chr4_3:66978580-66978599 Msa0657340:CDS 40.0%
! TTGGAAGCCTTGTAGATGAA+TGG + chr4_3:66978726-66978745 Msa0657340:three_prime_UTR 40.0%
CATTCAACTCTACGACCAAC+TGG - chr4_3:66976812-66976831 None:intergenic 45.0%
CAGTTGGTCGTAGAGTTGAA+TGG + chr4_3:66976810-66976829 Msa0657340:CDS 45.0%
TTCTGGCCATGAACAAGAAC+CGG - chr4_3:66976935-66976954 None:intergenic 45.0%
CGAGCCTGAGATCTTTGATA+AGG - chr4_3:66977034-66977053 None:intergenic 45.0%
! AAAGATCTCAGGCTCGCTTT+TGG + chr4_3:66977038-66977057 Msa0657340:CDS 45.0%
!! AAGATCTCAGGCTCGCTTTT+GGG + chr4_3:66977039-66977058 Msa0657340:CDS 45.0%
ATCATCCGGTTAATAGGGGA+AGG + chr4_3:66977221-66977240 Msa0657340:intron 45.0%
ACTCTCCTTCCCCTATTAAC+CGG - chr4_3:66977229-66977248 None:intergenic 45.0%
TACTTGAGTACAATCAGGGC+CGG + chr4_3:66977334-66977353 Msa0657340:intron 45.0%
!! CTGGCTTTTGCTTGTGTTTG+TGG + chr4_3:66977510-66977529 Msa0657340:intron 45.0%
!! ATGGGAAAAGGCTCTAAAGG+AGG + chr4_3:66978288-66978307 Msa0657340:CDS 45.0%
! TTCTTTGGAGGGGACACTAT+CGG + chr4_3:66978358-66978377 Msa0657340:CDS 45.0%
ACCTTGATCTTGCTCTTGGA+TGG + chr4_3:66978383-66978402 Msa0657340:CDS 45.0%
TCCATCCAAGAGCAAGATCA+AGG - chr4_3:66978387-66978406 None:intergenic 45.0%
GAGCCATCCTATCATCATCA+AGG + chr4_3:66978504-66978523 Msa0657340:CDS 45.0%
TTATTGCCACCGTCGCATAA+AGG + chr4_3:66978558-66978577 Msa0657340:CDS 45.0%
AATACTCCTTTATGCGACGG+TGG - chr4_3:66978567-66978586 None:intergenic 45.0%
CATTCAACTCTACGACCAAC+TGG - chr4_3:66976812-66976831 None:intergenic 45.0%
CAGTTGGTCGTAGAGTTGAA+TGG + chr4_3:66976810-66976829 Msa0657340:CDS 45.0%
TTCTGGCCATGAACAAGAAC+CGG - chr4_3:66976935-66976954 None:intergenic 45.0%
CGAGCCTGAGATCTTTGATA+AGG - chr4_3:66977034-66977053 None:intergenic 45.0%
! AAAGATCTCAGGCTCGCTTT+TGG + chr4_3:66977038-66977057 Msa0657340:CDS 45.0%
!! AAGATCTCAGGCTCGCTTTT+GGG + chr4_3:66977039-66977058 Msa0657340:CDS 45.0%
ATCATCCGGTTAATAGGGGA+AGG + chr4_3:66977221-66977240 Msa0657340:intron 45.0%
ACTCTCCTTCCCCTATTAAC+CGG - chr4_3:66977229-66977248 None:intergenic 45.0%
TACTTGAGTACAATCAGGGC+CGG + chr4_3:66977334-66977353 Msa0657340:intron 45.0%
!! CTGGCTTTTGCTTGTGTTTG+TGG + chr4_3:66977510-66977529 Msa0657340:intron 45.0%
!! ATGGGAAAAGGCTCTAAAGG+AGG + chr4_3:66978288-66978307 Msa0657340:CDS 45.0%
! TTCTTTGGAGGGGACACTAT+CGG + chr4_3:66978358-66978377 Msa0657340:CDS 45.0%
ACCTTGATCTTGCTCTTGGA+TGG + chr4_3:66978383-66978402 Msa0657340:CDS 45.0%
TCCATCCAAGAGCAAGATCA+AGG - chr4_3:66978387-66978406 None:intergenic 45.0%
GAGCCATCCTATCATCATCA+AGG + chr4_3:66978504-66978523 Msa0657340:CDS 45.0%
TTATTGCCACCGTCGCATAA+AGG + chr4_3:66978558-66978577 Msa0657340:CDS 45.0%
AATACTCCTTTATGCGACGG+TGG - chr4_3:66978567-66978586 None:intergenic 45.0%
!! ATATAAAAAAAAATATGTTT+CGG - chr4_3:66977413-66977432 None:intergenic 5.0%
!! ATATAAAAAAAAATATGTTT+CGG - chr4_3:66977413-66977432 None:intergenic 5.0%
TAAGGATCAGGAGGCAGCAA+TGG - chr4_3:66977016-66977035 None:intergenic 50.0%
GGAAGGAGAGTTCTCTCGAA+AGG + chr4_3:66977238-66977257 Msa0657340:intron 50.0%
!!! CACCGGGCCTCGATTTTTTT+GGG + chr4_3:66977385-66977404 Msa0657340:intron 50.0%
!!! ACCGGGCCTCGATTTTTTTG+GGG + chr4_3:66977386-66977405 Msa0657340:intron 50.0%
TTCGGGCCCCAAAAAAATCG+AGG - chr4_3:66977395-66977414 None:intergenic 50.0%
TGTGGGTTCAACTCCCACTA+AGG + chr4_3:66977534-66977553 Msa0657340:intron 50.0%
CGGCCCTGAGTACAATTGTT+TGG + chr4_3:66977671-66977690 Msa0657340:intron 50.0%
! TATAGCTTGCGCTGGGTTCA+TGG + chr4_3:66978239-66978258 Msa0657340:intron 50.0%
! TCTTTGGAGGGGACACTATC+GGG + chr4_3:66978359-66978378 Msa0657340:CDS 50.0%
GGGTACCTTGATCTTGCTCT+TGG + chr4_3:66978379-66978398 Msa0657340:CDS 50.0%
!! TCAAGGAGTGTTTGCCACCA+AGG + chr4_3:66978521-66978540 Msa0657340:CDS 50.0%
!! CAAGGAGTGTTTGCCACCAA+GGG + chr4_3:66978522-66978541 Msa0657340:CDS 50.0%
GAAAGATGCGGCGACACTTA+TGG + chr4_3:66978756-66978775 Msa0657340:three_prime_UTR 50.0%
TAAGGATCAGGAGGCAGCAA+TGG - chr4_3:66977016-66977035 None:intergenic 50.0%
GGAAGGAGAGTTCTCTCGAA+AGG + chr4_3:66977238-66977257 Msa0657340:intron 50.0%
!!! CACCGGGCCTCGATTTTTTT+GGG + chr4_3:66977385-66977404 Msa0657340:intron 50.0%
!!! ACCGGGCCTCGATTTTTTTG+GGG + chr4_3:66977386-66977405 Msa0657340:intron 50.0%
TTCGGGCCCCAAAAAAATCG+AGG - chr4_3:66977395-66977414 None:intergenic 50.0%
TGTGGGTTCAACTCCCACTA+AGG + chr4_3:66977534-66977553 Msa0657340:intron 50.0%
CGGCCCTGAGTACAATTGTT+TGG + chr4_3:66977671-66977690 Msa0657340:intron 50.0%
! TATAGCTTGCGCTGGGTTCA+TGG + chr4_3:66978239-66978258 Msa0657340:intron 50.0%
! TCTTTGGAGGGGACACTATC+GGG + chr4_3:66978359-66978378 Msa0657340:CDS 50.0%
GGGTACCTTGATCTTGCTCT+TGG + chr4_3:66978379-66978398 Msa0657340:CDS 50.0%
!! TCAAGGAGTGTTTGCCACCA+AGG + chr4_3:66978521-66978540 Msa0657340:CDS 50.0%
!! CAAGGAGTGTTTGCCACCAA+GGG + chr4_3:66978522-66978541 Msa0657340:CDS 50.0%
GAAAGATGCGGCGACACTTA+TGG + chr4_3:66978756-66978775 Msa0657340:three_prime_UTR 50.0%
CCAAAAAAATCGAGGCCCGG+TGG - chr4_3:66977387-66977406 None:intergenic 55.0%
!!! CCACCGGGCCTCGATTTTTT+TGG + chr4_3:66977384-66977403 Msa0657340:intron 55.0%
GCCCCAAAAAAATCGAGGCC+CGG - chr4_3:66977390-66977409 None:intergenic 55.0%
AACAAGAGCCGGAGCTTCAG+TGG + chr4_3:66977483-66977502 Msa0657340:intron 55.0%
CCAAAAAAATCGAGGCCCGG+TGG - chr4_3:66977387-66977406 None:intergenic 55.0%
!!! CCACCGGGCCTCGATTTTTT+TGG + chr4_3:66977384-66977403 Msa0657340:intron 55.0%
GCCCCAAAAAAATCGAGGCC+CGG - chr4_3:66977390-66977409 None:intergenic 55.0%
AACAAGAGCCGGAGCTTCAG+TGG + chr4_3:66977483-66977502 Msa0657340:intron 55.0%
TGGCATAGCCCAGCCTCGAC+GGG - chr4_3:66977367-66977386 None:intergenic 65.0%
GTGGCATAGCCCAGCCTCGA+CGG - chr4_3:66977368-66977387 None:intergenic 65.0%
TCGAGGCTGGGCTATGCCAC+CGG + chr4_3:66977368-66977387 Msa0657340:intron 65.0%
CCAGCGCACCACTGAAGCTC+CGG - chr4_3:66977494-66977513 None:intergenic 65.0%
TGGCATAGCCCAGCCTCGAC+GGG - chr4_3:66977367-66977386 None:intergenic 65.0%
GTGGCATAGCCCAGCCTCGA+CGG - chr4_3:66977368-66977387 None:intergenic 65.0%
TCGAGGCTGGGCTATGCCAC+CGG + chr4_3:66977368-66977387 Msa0657340:intron 65.0%
CCAGCGCACCACTGAAGCTC+CGG - chr4_3:66977494-66977513 None:intergenic 65.0%
!! AGCCTCGACGGGCTATGGGC+CGG - chr4_3:66977356-66977375 None:intergenic 70.0%
GCCCATAGCCCGTCGAGGCT+GGG + chr4_3:66977356-66977375 Msa0657340:intron 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG - chr4_3:66977360-66977379 None:intergenic 70.0%
!! AGCCCAGCCTCGACGGGCTA+TGG - chr4_3:66977361-66977380 None:intergenic 70.0%
CGAGGCTGGGCTATGCCACC+GGG + chr4_3:66977369-66977388 Msa0657340:intron 70.0%
CCGGAGCTTCAGTGGTGCGC+TGG + chr4_3:66977491-66977510 Msa0657340:intron 70.0%
!! AGCCTCGACGGGCTATGGGC+CGG - chr4_3:66977356-66977375 None:intergenic 70.0%
GCCCATAGCCCGTCGAGGCT+GGG + chr4_3:66977356-66977375 Msa0657340:intron 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG - chr4_3:66977360-66977379 None:intergenic 70.0%
!! AGCCCAGCCTCGACGGGCTA+TGG - chr4_3:66977361-66977380 None:intergenic 70.0%
CGAGGCTGGGCTATGCCACC+GGG + chr4_3:66977369-66977388 Msa0657340:intron 70.0%
CCGGAGCTTCAGTGGTGCGC+TGG + chr4_3:66977491-66977510 Msa0657340:intron 70.0%
GGCCCATAGCCCGTCGAGGC+TGG + chr4_3:66977355-66977374 Msa0657340:intron 75.0%
GGCCCATAGCCCGTCGAGGC+TGG + chr4_3:66977355-66977374 Msa0657340:intron 75.0%
! GGCCGGCCCATAGCCCGTCG+AGG + chr4_3:66977351-66977370 Msa0657340:intron 80.0%
! GGCCGGCCCATAGCCCGTCG+AGG + chr4_3:66977351-66977370 Msa0657340:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 66976741 66978794 66976741 ID=Msa0657340;Name=Msa0657340
chr4_3 mRNA 66976741 66978794 66976741 ID=Msa0657340-mRNA-1;Parent=Msa0657340;Name=Msa0657340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=26|1|1|1|1|1|2|188|225
chr4_3 exon 66976741 66977081 66976741 ID=Msa0657340-mRNA-1:exon:19231;Parent=Msa0657340-mRNA-1
chr4_3 exon 66978244 66978794 66978244 ID=Msa0657340-mRNA-1:exon:19232;Parent=Msa0657340-mRNA-1
chr4_3 five_prime_UTR 66976741 66976766 66976741 ID=Msa0657340-mRNA-1:five_prime_utr;Parent=Msa0657340-mRNA-1
chr4_3 CDS 66976767 66977081 66976767 ID=Msa0657340-mRNA-1:cds;Parent=Msa0657340-mRNA-1
chr4_3 CDS 66978244 66978606 66978244 ID=Msa0657340-mRNA-1:cds;Parent=Msa0657340-mRNA-1
chr4_3 three_prime_UTR 66978607 66978794 66978607 ID=Msa0657340-mRNA-1:three_prime_utr;Parent=Msa0657340-mRNA-1
Gene Sequence

>Msa0657340

ATGAGAAACCAAGATGTGAAGCTGCTTAACTTTTTATTGAGTCCAGTTGGTCGTAGAGTTGAATGGGCTCTAAAACTCAAGGGTGTTGAGTATGATTATATAGAAGAAGATATCTTCAACAAAAGTAGTCTTCTTTTCGAATTGAACCCGATTCATAAGAAAGTTCCGGTTCTTGTTCATGGCCAGAAATCAATTGCAGAGTCACTGATTATTCTTGAATACATTGATGAAACATGGAAGCAATATCCATTGCTGCCTCCTGATCCTTATCAAAGATCTCAGGCTCGCTTTTGGGCTAAGTTATCTGATGAAAAGCTTGCGCTGGGTTCATGGATTGCATTGATTAAGAAAGGTGATGAATGGGAAAAGGCTCTAAAGGAGGCAAGAGAAATCATGGAAAAGTTAGAAGAGGAGATAAAGGGAAAGAAATTCTTTGGAGGGGACACTATCGGGTACCTTGATCTTGCTCTTGGATGGATCACTTGTTTTCTTCCAATTTGGGAAGAAATTGGGTCAACGCAGATACTTGACCCATTAAAATGTCCTTCCATCTCTTCATGGAAGATCAATTTTCTGAGCCATCCTATCATCATCAAGGAGTGTTTGCCACCAAGGGATGAAATGATTCTTTATTGCCACCGTCGCATAAAGGAGTATTCTTCAACTCATCGTGGTTAA

Protein sequence

>Msa0657340

MRNQDVKLLNFLLSPVGRRVEWALKLKGVEYDYIEEDIFNKSSLLFELNPIHKKVPVLVHGQKSIAESLIILEYIDETWKQYPLLPPDPYQRSQARFWAKLSDEKLALGSWIALIKKGDEWEKALKEAREIMEKLEEEIKGKKFFGGDTIGYLDLALGWITCFLPIWEEIGSTQILDPLKCPSISSWKINFLSHPIIIKECLPPRDEMILYCHRRIKEYSSTHRG*