AlfalfaGEDB | Msa0657340

M. sativa cultivar zhongmu-4 / Msa0657340

KEGG: K00799
GO: GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009506 GO:0009636 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0072341 GO:0098754 GO:1900750 GO:1901564 GO:1901681
PFAM: PF02798.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657340	XP_003629835.1	95.556	225	9	1	1	225	2	225	3.45e-154	437

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657340	sp\|P32110\|GSTX6_SOYBN	47.297	222	113	3	3	222	5	224	3.87e-65	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657340	G7L788	95.556	225	9	1	1	225	2	225	1.65e-154	437

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0657340	-0.806979	6.322523e-50	-8.615850e-47
Msa0000800	Msa0657340	0.854195	1.447191e-61	-8.615850e-47
Msa0004180	Msa0657340	-0.808887	2.483305e-50	-8.615850e-47
Msa0007810	Msa0657340	-0.801026	1.093521e-48	-8.615850e-47
Msa0010150	Msa0657340	0.828519	8.592564e-55	-8.615850e-47
Msa0011010	Msa0657340	0.820002	8.630672e-53	-8.615850e-47
Msa0011040	Msa0657340	0.811595	6.472382e-51	-8.615850e-47
Msa0011060	Msa0657340	-0.810468	1.135317e-50	-8.615850e-47
Msa0014280	Msa0657340	0.822107	2.827674e-53	-8.615850e-47
Msa0024490	Msa0657340	-0.820014	8.578798e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657340	MtrunA17_Chr8g0379561	95.556	225	9	1	1	225	2	225	3.18e-158	437
Msa0657340	MtrunA17_Chr8g0379581	63.839	224	80	1	1	224	1	223	1.94e-95	278
Msa0657340	MtrunA17_Chr6g0483141	52.885	208	95	2	5	211	3	208	1.28e-71	217
Msa0657340	MtrunA17_Chr7g0240681	48.113	212	106	3	2	211	4	213	1.03e-63	197
Msa0657340	MtrunA17_Chr4g0008781	49.048	210	106	1	2	211	5	213	1.56e-62	194
Msa0657340	MtrunA17_Chr7g0240691	43.111	225	124	3	2	224	34	256	4.56e-61	192
Msa0657340	MtrunA17_Chr1g0196771	46.330	218	113	3	4	219	2	217	5.68e-60	188
Msa0657340	MtrunA17_Chr3g0132581	46.890	209	110	1	1	209	1	208	7.75e-60	187
Msa0657340	MtrunA17_Chr7g0240561	45.370	216	115	3	1	215	3	216	1.03e-59	187
Msa0657340	MtrunA17_Chr7g0240641	44.651	215	115	4	3	215	4	216	2.39e-59	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657340	AT2G29420.1	44.037	218	121	1	3	220	7	223	7.23e-64	198
Msa0657340	AT2G29460.1	46.188	223	116	3	2	222	4	224	1.99e-62	194
Msa0657340	AT2G29490.1	48.571	210	104	3	2	209	4	211	5.70e-62	193
Msa0657340	AT2G29480.1	45.740	223	117	3	2	222	4	224	5.76e-62	193
Msa0657340	AT2G29450.1	46.847	222	113	4	4	222	5	224	1.46e-60	189
Msa0657340	AT2G29440.1	45.740	223	117	3	2	222	3	223	7.23e-60	188
Msa0657340	AT3G09270.1	46.667	210	109	3	2	209	3	211	2.12e-58	184
Msa0657340	AT2G29470.1	45.498	211	110	4	2	209	4	212	2.10e-55	176
Msa0657340	AT1G17170.1	42.791	215	118	4	5	218	4	214	1.94e-49	161
Msa0657340	AT1G59670.1	43.662	213	111	5	4	208	5	216	1.28e-47	157

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Find 65 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTCCTTGATGATGAT+AGG	0.524604	4_3:-66978511	None:intergenic
AAAGATCTCAGGCTCGCTTT+TGG	0.326368	4_3:+66977038	Msa0657340:CDS
AAAGGAGGCAAGAGAAATCA+TGG	0.475218	4_3:+66978303	Msa0657340:CDS
AAAGTTAGAAGAGGAGATAA+AGG	0.273945	4_3:+66978327	Msa0657340:CDS
AAAGTTCCGGTTCTTGTTCA+TGG	0.322486	4_3:+66976926	Msa0657340:CDS
AAATTATTATAGCTTGCGCT+GGG	0.589664	4_3:+66978232	Msa0657340:intron
AAGAATACTCCTTTATGCGA+CGG	0.595491	4_3:-66978567	None:intergenic
AAGGGAAAGAAATTCTTTGG+AGG	0.576725	4_3:+66978346	Msa0657340:CDS
AAGTTAGAAGAGGAGATAAA+GGG	0.491500	4_3:+66978328	Msa0657340:CDS
AATACTCCTTTATGCGACGG+TGG	0.688837	4_3:-66978564	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTAACTAGGCTTATTCTG+AGG	+	chr4_3:66977118-66977137	Msa0657340:intron	30.0%
TGTTAATCATCCGGTTAATA+GGG	+	chr4_3:66977216-66977235	Msa0657340:intron	30.0%
CATGATCAATATGTGTTTAG+TGG	+	chr4_3:66977304-66977323	Msa0657340:intron	30.0%
TCATTACTTGAGTACAATCA+GGG	+	chr4_3:66977330-66977349	Msa0657340:intron	30.0%
ATAAGATTTCAAACAAGAGC+CGG	+	chr4_3:66977472-66977491	Msa0657340:intron	30.0%
TAACCAAACAATTGTACTCA+GGG	-	chr4_3:66977677-66977696	None:intergenic	30.0%
GATGTTAATTATTCCATTCC+AGG	+	chr4_3:66977889-66977908	Msa0657340:intron	30.0%
ACCGTTTCTATCAACATATT+AGG	-	chr4_3:66978068-66978087	None:intergenic	30.0%
TGATTAAGAAAGGTGATGAA+TGG	+	chr4_3:66978269-66978288	Msa0657340:CDS	30.0%
GATTAAGAAAGGTGATGAAT+GGG	+	chr4_3:66978270-66978289	Msa0657340:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	66976741	66978794	66976741	ID=Msa0657340;Name=Msa0657340
chr4_3	mRNA	66976741	66978794	66976741	ID=Msa0657340-mRNA-1;Parent=Msa0657340;Name=Msa0657340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=26\|1\|1\|1\|1\|1\|2\|188\|225
chr4_3	exon	66976741	66977081	66976741	ID=Msa0657340-mRNA-1:exon:19231;Parent=Msa0657340-mRNA-1
chr4_3	exon	66978244	66978794	66978244	ID=Msa0657340-mRNA-1:exon:19232;Parent=Msa0657340-mRNA-1
chr4_3	five_prime_UTR	66976741	66976766	66976741	ID=Msa0657340-mRNA-1:five_prime_utr;Parent=Msa0657340-mRNA-1
chr4_3	CDS	66976767	66977081	66976767	ID=Msa0657340-mRNA-1:cds;Parent=Msa0657340-mRNA-1
chr4_3	CDS	66978244	66978606	66978244	ID=Msa0657340-mRNA-1:cds;Parent=Msa0657340-mRNA-1
chr4_3	three_prime_UTR	66978607	66978794	66978607	ID=Msa0657340-mRNA-1:three_prime_utr;Parent=Msa0657340-mRNA-1

Gene Sequence

>Msa0657340

ATGAGAAACCAAGATGTGAAGCTGCTTAACTTTTTATTGAGTCCAGTTGGTCGTAGAGTTGAATGGGCTCTAAAACTCAAGGGTGTTGAGTATGATTATATAGAAGAAGATATCTTCAACAAAAGTAGTCTTCTTTTCGAATTGAACCCGATTCATAAGAAAGTTCCGGTTCTTGTTCATGGCCAGAAATCAATTGCAGAGTCACTGATTATTCTTGAATACATTGATGAAACATGGAAGCAATATCCATTGCTGCCTCCTGATCCTTATCAAAGATCTCAGGCTCGCTTTTGGGCTAAGTTATCTGATGAAAAGCTTGCGCTGGGTTCATGGATTGCATTGATTAAGAAAGGTGATGAATGGGAAAAGGCTCTAAAGGAGGCAAGAGAAATCATGGAAAAGTTAGAAGAGGAGATAAAGGGAAAGAAATTCTTTGGAGGGGACACTATCGGGTACCTTGATCTTGCTCTTGGATGGATCACTTGTTTTCTTCCAATTTGGGAAGAAATTGGGTCAACGCAGATACTTGACCCATTAAAATGTCCTTCCATCTCTTCATGGAAGATCAATTTTCTGAGCCATCCTATCATCATCAAGGAGTGTTTGCCACCAAGGGATGAAATGATTCTTTATTGCCACCGTCGCATAAAGGAGTATTCTTCAACTCATCGTGGTTAA

Protein sequence

>Msa0657340

MRNQDVKLLNFLLSPVGRRVEWALKLKGVEYDYIEEDIFNKSSLLFELNPIHKKVPVLVHGQKSIAESLIILEYIDETWKQYPLLPPDPYQRSQARFWAKLSDEKLALGSWIALIKKGDEWEKALKEAREIMEKLEEEIKGKKFFGGDTIGYLDLALGWITCFLPIWEEIGSTQILDPLKCPSISSWKINFLSHPIIIKECLPPRDEMILYCHRRIKEYSSTHRG*