AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565180 MtrunA17_Chr8g0379561 96.429 224 8 0 1 224 2 225 1.12e-160 443
Msa0565180 MtrunA17_Chr8g0379581 64.574 223 79 0 1 223 1 223 7.86e-98 284
Msa0565180 MtrunA17_Chr6g0483141 53.398 206 96 0 5 210 3 208 5.07e-74 223
Msa0565180 MtrunA17_Chr7g0240681 48.815 211 105 2 2 210 4 213 3.90e-66 203
Msa0565180 MtrunA17_Chr4g0008781 49.761 209 105 0 2 210 5 213 7.59e-65 200
Msa0565180 MtrunA17_Chr7g0240691 43.750 224 123 2 2 223 34 256 1.50e-63 198
Msa0565180 MtrunA17_Chr1g0196771 47.005 217 112 2 4 218 2 217 1.80e-62 194
Msa0565180 MtrunA17_Chr3g0132581 47.596 208 109 0 1 208 1 208 2.06e-62 194
Msa0565180 MtrunA17_Chr7g0240561 45.581 215 115 2 1 214 3 216 5.35e-62 193
Msa0565180 MtrunA17_Chr7g0240641 45.327 214 114 3 3 214 4 216 6.22e-62 192
Msa0565180 MtrunA17_Chr4g0008791 45.909 220 117 2 5 223 7 225 1.14e-61 192
Msa0565180 MtrunA17_Chr7g0240631 44.860 214 115 3 3 214 4 216 2.25e-61 191
Msa0565180 MtrunA17_Chr7g0240581 46.729 214 112 2 2 214 4 216 1.23e-59 187
Msa0565180 MtrunA17_Chr1g0212301 46.083 217 114 2 5 218 3 219 1.27e-58 184
Msa0565180 MtrunA17_Chr7g0240611 42.534 221 121 3 4 223 6 221 1.80e-58 184
Msa0565180 MtrunA17_Chr7g0240551 45.755 212 113 2 4 214 6 216 7.49e-58 182
Msa0565180 MtrunA17_Chr7g0240511 44.292 219 115 3 4 221 6 218 2.20e-56 178
Msa0565180 MtrunA17_Chr1g0196661 44.292 219 120 1 5 221 3 221 5.11e-56 177
Msa0565180 MtrunA17_Chr7g0240671 45.146 206 107 3 6 210 5 205 2.92e-55 176
Msa0565180 MtrunA17_Chr7g0240531 44.240 217 117 4 4 218 6 220 2.98e-55 176
Msa0565180 MtrunA17_Chr7g0240541 43.519 216 120 2 4 218 6 220 1.30e-53 171
Msa0565180 MtrunA17_Chr7g0240651 40.541 222 126 3 3 223 5 221 2.30e-53 171
Msa0565180 MtrunA17_Chr5g0417011 41.981 212 117 2 3 208 5 216 5.09e-53 170
Msa0565180 MtrunA17_Chr1g0196691 43.458 214 118 2 1 211 24 237 7.29e-53 170
Msa0565180 MtrunA17_Chr2g0312771 45.098 204 109 2 5 207 4 205 2.07e-52 168
Msa0565180 MtrunA17_Chr7g0240521 45.909 220 107 4 4 217 13 226 2.67e-52 168
Msa0565180 MtrunA17_Chr4g0029341 43.805 226 110 4 1 217 1 218 2.94e-52 168
Msa0565180 MtrunA17_Chr2g0312751 44.608 204 110 2 5 207 4 205 2.07e-51 166
Msa0565180 MtrunA17_Chr2g0312721 43.439 221 118 3 5 224 4 218 8.55e-51 164
Msa0565180 MtrunA17_Chr2g0312781 44.335 203 110 2 6 207 22 222 6.10e-50 162
Msa0565180 MtrunA17_Chr1g0196711 40.930 215 125 1 5 217 3 217 2.34e-48 158
Msa0565180 MtrunA17_Chr1g0196721 43.478 207 115 1 6 210 3 209 3.05e-48 157
Msa0565180 MtrunA17_Chr7g0240661 43.627 204 109 3 4 206 6 204 5.73e-48 157
Msa0565180 MtrunA17_Chr2g0312791 41.262 206 117 3 5 208 4 207 3.55e-47 155
Msa0565180 MtrunA17_Chr2g0312731 40.686 204 118 2 5 207 4 205 3.95e-47 155
Msa0565180 MtrunA17_Chr5g0415411 38.813 219 126 3 1 211 1 219 4.64e-47 155
Msa0565180 MtrunA17_Chr2g0312811 42.029 207 113 5 5 207 4 207 3.45e-45 150
Msa0565180 MtrunA17_Chr3g0107731 43.216 199 110 2 5 202 9 205 1.54e-44 148
Msa0565180 MtrunA17_Chr8g0363751 41.667 216 118 5 1 208 1 216 2.66e-44 148
Msa0565180 MtrunA17_Chr2g0312681 39.901 203 117 4 4 204 3 202 1.04e-43 146
Msa0565180 MtrunA17_Chr8g0357241 42.553 188 105 2 4 190 3 188 2.58e-42 142
Msa0565180 MtrunA17_Chr4g0069471 46.448 183 92 3 5 185 25 203 2.88e-42 142
Msa0565180 MtrunA17_Chr8g0357211 49.032 155 78 1 4 157 3 157 8.72e-42 141
Msa0565180 MtrunA17_Chr3g0107741 41.379 203 116 2 1 202 5 205 9.21e-41 139
Msa0565180 MtrunA17_Chr2g0312691 40.191 209 118 5 4 210 3 206 2.08e-39 135
Msa0565180 MtrunA17_Chr5g0433801 38.614 202 121 2 2 202 3 202 1.15e-38 133
Msa0565180 MtrunA17_Chr2g0312711 38.942 208 123 3 4 210 3 207 6.82e-38 131
Msa0565180 MtrunA17_Chr8g0391631 46.541 159 77 5 1 151 17 175 4.18e-34 120
Msa0565180 MtrunA17_Chr2g0313561 48.649 74 34 3 48 118 1 73 1.75e-17 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565180 AT2G29420.1 44.700 217 120 0 3 219 7 223 3.36e-66 204
Msa0565180 AT2G29460.1 46.396 222 116 2 2 221 4 224 3.98e-64 199
Msa0565180 AT2G29490.1 48.804 209 104 2 2 208 4 211 2.04e-63 197
Msa0565180 AT2G29480.1 45.946 222 117 2 2 221 4 224 3.14e-63 196
Msa0565180 AT2G29450.1 49.519 208 101 3 4 208 5 211 2.57e-62 194
Msa0565180 AT3G09270.1 47.368 209 108 2 2 208 3 211 7.66e-61 190
Msa0565180 AT2G29440.1 45.946 222 117 2 2 221 3 223 1.03e-60 190
Msa0565180 AT2G29470.1 45.714 210 110 3 2 208 4 212 4.24e-57 181
Msa0565180 AT1G17170.1 42.991 214 118 3 5 217 4 214 3.48e-51 166
Msa0565180 AT1G59670.1 44.340 212 110 4 4 207 5 216 4.87e-50 163
Msa0565180 AT1G10370.1 42.727 220 119 3 1 213 1 220 1.97e-49 161
Msa0565180 AT1G17180.1 41.346 208 119 2 5 211 4 209 2.93e-49 160
Msa0565180 AT1G59700.1 43.961 207 108 4 4 202 5 211 4.19e-48 158
Msa0565180 AT1G78370.1 40.000 205 120 2 8 211 7 209 1.33e-47 156
Msa0565180 AT1G78380.1 39.815 216 127 2 4 218 3 216 1.66e-46 154
Msa0565180 AT1G17190.1 40.090 222 130 2 1 221 1 220 5.50e-46 152
Msa0565180 AT1G78340.1 39.070 215 128 3 5 218 4 216 1.39e-45 151
Msa0565180 AT1G53680.1 40.865 208 118 3 3 207 5 210 9.80e-45 149
Msa0565180 AT1G78360.1 40.092 217 126 4 5 219 4 218 1.02e-43 146
Msa0565180 AT1G78320.1 38.605 215 127 3 4 215 3 215 1.47e-43 146
Msa0565180 AT3G43800.1 42.512 207 112 4 1 202 1 205 4.37e-43 145
Msa0565180 AT1G27130.1 38.117 223 130 5 2 216 3 225 7.17e-43 144
Msa0565180 AT1G74590.1 37.379 206 124 2 13 213 15 220 1.43e-42 144
Msa0565180 AT1G10360.1 39.234 209 120 3 1 202 1 209 1.64e-41 141
Msa0565180 AT1G69920.1 37.668 223 127 6 3 215 32 252 1.04e-40 140
Msa0565180 AT1G27140.1 36.444 225 134 4 2 217 3 227 3.59e-40 138
Msa0565180 AT1G69930.1 34.649 228 141 4 2 223 9 234 3.82e-40 137
Msa0565180 AT5G62480.1 37.209 215 125 3 14 219 17 230 9.92e-40 137
Msa0565180 AT1G78320.2 32.710 214 114 3 4 215 3 188 9.61e-31 112
Msa0565180 AT5G62480.2 29.907 214 116 3 14 219 17 204 5.86e-25 98.2
Msa0565180 AT5G62480.3 29.907 214 115 3 14 219 17 203 1.19e-24 97.1

Find 67 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATTTGGGAAGAAAT+TGG 0.111299 4_1:+66102518 Msa0565180:CDS
GTGACTCTGCAATTGATTTC+TGG 0.174226 4_1:-66101386 None:intergenic
CAACAAAAGTAGTCTTCTTT+TGG 0.223951 4_1:+66101320 Msa0565180:CDS
TTCAACTCATCGTGGTTAAT+TGG 0.238245 4_1:+66102685 Msa0565180:exon
AAAGTTAGAAGAGGAGATAA+AGG 0.273945 4_1:+66102427 Msa0565180:CDS
GACCCAATTTCTTCCCAAAT+TGG 0.274164 4_1:-66102521 None:intergenic
TAACGTTAAATAAATTAGTT+TGG 0.303112 4_1:+66102804 Msa0565180:three_prime_UTR
AAAGTTCCGGTTCTTGTTCA+TGG 0.322486 4_1:+66101363 Msa0565180:CDS
AAAGATCTCAGGCTCGCTTT+TGG 0.326368 4_1:+66101475 Msa0565180:CDS
TATAGCTTGCGCTGGGTTCA+TGG 0.334296 4_1:+66102339 Msa0565180:intron
AATGTCCTTCCATCTCTTCA+TGG 0.338522 4_1:+66102567 Msa0565180:CDS
ATAAAGGGGAAGAAATTCTT+TGG 0.342108 4_1:+66102443 Msa0565180:CDS
AGTTAAGCAGCTTCACATCT+TGG 0.361900 4_1:-66101212 None:intergenic
ACCGGAACTTTCTTATGAAT+CGG 0.380626 4_1:-66101351 None:intergenic
GAAAGATGCGGCGACACTTA+TGG 0.384795 4_1:+66102853 Msa0565180:three_prime_UTR
TTCCAATTTGGGAAGAAATT+GGG 0.398944 4_1:+66102519 Msa0565180:CDS
CCCGATTCATAAGAAAGTTC+CGG 0.414826 4_1:+66101350 Msa0565180:CDS
TTATTGCCACCGTCGCATAA+AGG 0.420018 4_1:+66102655 Msa0565180:CDS
ACCTTGATCTTGCTCTTGGA+TGG 0.423990 4_1:+66102483 Msa0565180:CDS
AAGTTAGAAGAGGAGATAAA+GGG 0.426487 4_1:+66102428 Msa0565180:CDS
TTGGAAGCCTTGTAGATGAA+TGG 0.427376 4_1:+66102823 Msa0565180:three_prime_UTR
TAAAGAATCATTTCATCCCT+TGG 0.429286 4_1:-66102635 None:intergenic
CCGGAACTTTCTTATGAATC+GGG 0.433313 4_1:-66101350 None:intergenic
TTCTGGCCATGAACAAGAAC+CGG 0.434336 4_1:-66101369 None:intergenic
TGGATTGCATTGATTAAGAA+AGG 0.435401 4_1:+66102359 Msa0565180:CDS
GGCTAAGTTATCTGATGAAA+AGG 0.437582 4_1:+66101497 Msa0565180:CDS
CATTCAACTCTACGACCAAC+TGG 0.446242 4_1:-66101246 None:intergenic
GGGTACCTTGATCTTGCTCT+TGG 0.453072 4_1:+66102479 Msa0565180:CDS
TCTTTGGAGGGGACACTATC+GGG 0.454808 4_1:+66102459 Msa0565180:CDS
TAAATTATTATAGCTTGCGC+TGG 0.466026 4_1:+66102331 Msa0565180:intron
TGATTAAGAAAGGTGATGAA+TGG 0.474122 4_1:+66102369 Msa0565180:CDS
AAAGGAGGCAAGAGAAATCA+TGG 0.475218 4_1:+66102403 Msa0565180:CDS
TTCTTTGGAGGGGACACTAT+CGG 0.475345 4_1:+66102458 Msa0565180:CDS
GATTAAGAAAGGTGATGAAT+GGG 0.480475 4_1:+66102370 Msa0565180:CDS
GAAAGGTGATGAATGGGAAA+AGG 0.495659 4_1:+66102376 Msa0565180:CDS
TGAGATCTTTGATAAGGATC+AGG 0.498359 4_1:-66101462 None:intergenic
AGTTGGTCGTAGAGTTGAAT+GGG 0.508405 4_1:+66101248 Msa0565180:CDS
AGTTAGAAGAGGAGATAAAG+GGG 0.516164 4_1:+66102429 Msa0565180:CDS
CAGTTGGTCGTAGAGTTGAA+TGG 0.517051 4_1:+66101247 Msa0565180:CDS
TGATCCTTATCAAAGATCTC+AGG 0.520135 4_1:+66101464 Msa0565180:CDS
CGAGCCTGAGATCTTTGATA+AGG 0.520914 4_1:-66101468 None:intergenic
ATAATTTCCATTCATCTACA+AGG 0.525093 4_1:-66102830 None:intergenic
AATCATGGAAAAGTTAGAAG+AGG 0.531445 4_1:+66102418 Msa0565180:CDS
GGCAAACACTCCTTGATGAT+AGG 0.532292 4_1:-66102611 None:intergenic
TCTGAGCCATCCTATCATCA+AGG 0.538678 4_1:+66102601 Msa0565180:CDS
ATTGATCTTCCATGAAGAGA+TGG 0.543546 4_1:-66102576 None:intergenic
TGAATGGGAAAAGGCTCTAA+AGG 0.545680 4_1:+66102385 Msa0565180:CDS
TCCATCCAAGAGCAAGATCA+AGG 0.557485 4_1:-66102484 None:intergenic
AACACTCCTTGATGATAGGA+TGG 0.559759 4_1:-66102607 None:intergenic
TAAGGATCAGGAGGCAGCAA+TGG 0.562517 4_1:-66101450 None:intergenic
CAAGGAGTGTTTGCCACCAA+GGG 0.564625 4_1:+66102619 Msa0565180:CDS
TGAATGGGCTCTAAAACTCA+AGG 0.568264 4_1:+66101263 Msa0565180:CDS
TCAAGGAGTGTTTGCCACCA+AGG 0.571195 4_1:+66102618 Msa0565180:CDS
AGGGGAAGAAATTCTTTGGA+GGG 0.575626 4_1:+66102447 Msa0565180:CDS
TTGAATACATTGATGAAACA+TGG 0.575829 4_1:+66101418 Msa0565180:CDS
AAATTATTATAGCTTGCGCT+GGG 0.589664 4_1:+66102332 Msa0565180:intron
AAGAATACTCCTTTATGCGA+CGG 0.595491 4_1:-66102664 None:intergenic
AAGGGGAAGAAATTCTTTGG+AGG 0.602521 4_1:+66102446 Msa0565180:CDS
AATGGAAATTATGAAAGATG+CGG 0.606272 4_1:+66102841 Msa0565180:three_prime_UTR
ATCTTCCATGAAGAGATGGA+AGG 0.621011 4_1:-66102572 None:intergenic
AGAATCATTTCATCCCTTGG+TGG 0.643379 4_1:-66102632 None:intergenic
GAATGGGCTCTAAAACTCAA+GGG 0.646090 4_1:+66101264 Msa0565180:CDS
GATCTTTGATAAGGATCAGG+AGG 0.658191 4_1:-66101459 None:intergenic
GGGGAAGAAATTCTTTGGAG+GGG 0.670163 4_1:+66102448 Msa0565180:CDS
ATGGGAAAAGGCTCTAAAGG+AGG 0.677413 4_1:+66102388 Msa0565180:CDS
AATACTCCTTTATGCGACGG+TGG 0.688837 4_1:-66102661 None:intergenic
GAGTATTCTTCAACTCATCG+TGG 0.696267 4_1:+66102677 Msa0565180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATATAAAACTATTTTAA+AGG - chr4_1:66102108-66102127 None:intergenic 10.0%
!!! TCAATATAAAACTATTTTAA+AGG - chr4_1:66102108-66102127 None:intergenic 10.0%
!!! AAAATTATGTTTTCTTTTTG+AGG + chr4_1:66101614-66101633 Msa0565180:intron 15.0%
!!! AATAATTGTTTTATGAACTT+AGG + chr4_1:66101715-66101734 Msa0565180:intron 15.0%
!! TAATTTACACATACAAAAAT+AGG - chr4_1:66102318-66102337 None:intergenic 15.0%
!! TAACGTTAAATAAATTAGTT+TGG + chr4_1:66102804-66102823 Msa0565180:three_prime_UTR 15.0%
!!! AAAATTATGTTTTCTTTTTG+AGG + chr4_1:66101614-66101633 Msa0565180:intron 15.0%
!!! AATAATTGTTTTATGAACTT+AGG + chr4_1:66101715-66101734 Msa0565180:intron 15.0%
!! TAATTTACACATACAAAAAT+AGG - chr4_1:66102318-66102337 None:intergenic 15.0%
!! TAACGTTAAATAAATTAGTT+TGG + chr4_1:66102804-66102823 Msa0565180:three_prime_UTR 15.0%
!! TATGTTGTTCAAATTTAACT+AGG + chr4_1:66101543-66101562 Msa0565180:intron 20.0%
!! GAATATTTAATGTTACATAG+AGG + chr4_1:66101803-66101822 Msa0565180:intron 20.0%
!! TATCTCTTGAATTTATTAGA+TGG - chr4_1:66101899-66101918 None:intergenic 20.0%
!! TATGTTGTTCAAATTTAACT+AGG + chr4_1:66101543-66101562 Msa0565180:intron 20.0%
!! GAATATTTAATGTTACATAG+AGG + chr4_1:66101803-66101822 Msa0565180:intron 20.0%
!! TATCTCTTGAATTTATTAGA+TGG - chr4_1:66101899-66101918 None:intergenic 20.0%
! TTGAATACATTGATGAAACA+TGG + chr4_1:66101418-66101437 Msa0565180:CDS 25.0%
! AAATACTACGTTTCTTTCAA+AGG + chr4_1:66101583-66101602 Msa0565180:intron 25.0%
!!! TTGAGGCAAGAATATTTTTT+TGG + chr4_1:66101631-66101650 Msa0565180:intron 25.0%
!!! TTTTTTTGGTGTTAATCATC+CGG + chr4_1:66101645-66101664 Msa0565180:intron 25.0%
! TATGATCAATATGTCTTTAG+TGG + chr4_1:66101742-66101761 Msa0565180:intron 25.0%
! ATTACTTGAGTACAATTGTT+TGG + chr4_1:66101770-66101789 Msa0565180:intron 25.0%
! ATAATTTCCATTCATCTACA+AGG - chr4_1:66102833-66102852 None:intergenic 25.0%
! AATGGAAATTATGAAAGATG+CGG + chr4_1:66102841-66102860 Msa0565180:three_prime_UTR 25.0%
! TTGAATACATTGATGAAACA+TGG + chr4_1:66101418-66101437 Msa0565180:CDS 25.0%
! AAATACTACGTTTCTTTCAA+AGG + chr4_1:66101583-66101602 Msa0565180:intron 25.0%
!!! TTGAGGCAAGAATATTTTTT+TGG + chr4_1:66101631-66101650 Msa0565180:intron 25.0%
!!! TTTTTTTGGTGTTAATCATC+CGG + chr4_1:66101645-66101664 Msa0565180:intron 25.0%
! TATGATCAATATGTCTTTAG+TGG + chr4_1:66101742-66101761 Msa0565180:intron 25.0%
! ATTACTTGAGTACAATTGTT+TGG + chr4_1:66101770-66101789 Msa0565180:intron 25.0%
! ATAATTTCCATTCATCTACA+AGG - chr4_1:66102833-66102852 None:intergenic 25.0%
! AATGGAAATTATGAAAGATG+CGG + chr4_1:66102841-66102860 Msa0565180:three_prime_UTR 25.0%
! AACTTTTTATTGAGTCCAGT+TGG + chr4_1:66101231-66101250 Msa0565180:CDS 30.0%
! CAACAAAAGTAGTCTTCTTT+TGG + chr4_1:66101320-66101339 Msa0565180:CDS 30.0%
ATTTAACTAGGCTTATTCTG+AGG + chr4_1:66101555-66101574 Msa0565180:intron 30.0%
TGTTAATCATCCGGTTAATA+GGG + chr4_1:66101654-66101673 Msa0565180:intron 30.0%
GATGTTAATTATTCCATTCC+AGG + chr4_1:66101988-66102007 Msa0565180:intron 30.0%
ACAATATTTGAATGTATGCC+TGG - chr4_1:66102009-66102028 None:intergenic 30.0%
! GCCTAATATGTTGATAGAAA+CGG + chr4_1:66102163-66102182 Msa0565180:intron 30.0%
ACCGTTTCTATCAACATATT+AGG - chr4_1:66102167-66102186 None:intergenic 30.0%
! TAAATTATTATAGCTTGCGC+TGG + chr4_1:66102331-66102350 Msa0565180:intron 30.0%
! AAATTATTATAGCTTGCGCT+GGG + chr4_1:66102332-66102351 Msa0565180:intron 30.0%
!! TGGATTGCATTGATTAAGAA+AGG + chr4_1:66102359-66102378 Msa0565180:CDS 30.0%
TGATTAAGAAAGGTGATGAA+TGG + chr4_1:66102369-66102388 Msa0565180:CDS 30.0%
GATTAAGAAAGGTGATGAAT+GGG + chr4_1:66102370-66102389 Msa0565180:CDS 30.0%
AATCATGGAAAAGTTAGAAG+AGG + chr4_1:66102418-66102437 Msa0565180:CDS 30.0%
AAAGTTAGAAGAGGAGATAA+AGG + chr4_1:66102427-66102446 Msa0565180:CDS 30.0%
AAGTTAGAAGAGGAGATAAA+GGG + chr4_1:66102428-66102447 Msa0565180:CDS 30.0%
ATAAAGGGGAAGAAATTCTT+TGG + chr4_1:66102443-66102462 Msa0565180:CDS 30.0%
!! TCACTTGTTTTCTTCCAATT+TGG + chr4_1:66102507-66102526 Msa0565180:CDS 30.0%
!! CACTTGTTTTCTTCCAATTT+GGG + chr4_1:66102508-66102527 Msa0565180:CDS 30.0%
TTCCAATTTGGGAAGAAATT+GGG + chr4_1:66102519-66102538 Msa0565180:CDS 30.0%
!! AGATGGAAGGACATTTTAAT+GGG - chr4_1:66102562-66102581 None:intergenic 30.0%
TAAAGAATCATTTCATCCCT+TGG - chr4_1:66102638-66102657 None:intergenic 30.0%
! AACTTTTTATTGAGTCCAGT+TGG + chr4_1:66101231-66101250 Msa0565180:CDS 30.0%
! CAACAAAAGTAGTCTTCTTT+TGG + chr4_1:66101320-66101339 Msa0565180:CDS 30.0%
ATTTAACTAGGCTTATTCTG+AGG + chr4_1:66101555-66101574 Msa0565180:intron 30.0%
TGTTAATCATCCGGTTAATA+GGG + chr4_1:66101654-66101673 Msa0565180:intron 30.0%
GATGTTAATTATTCCATTCC+AGG + chr4_1:66101988-66102007 Msa0565180:intron 30.0%
ACAATATTTGAATGTATGCC+TGG - chr4_1:66102009-66102028 None:intergenic 30.0%
! GCCTAATATGTTGATAGAAA+CGG + chr4_1:66102163-66102182 Msa0565180:intron 30.0%
ACCGTTTCTATCAACATATT+AGG - chr4_1:66102167-66102186 None:intergenic 30.0%
! TAAATTATTATAGCTTGCGC+TGG + chr4_1:66102331-66102350 Msa0565180:intron 30.0%
! AAATTATTATAGCTTGCGCT+GGG + chr4_1:66102332-66102351 Msa0565180:intron 30.0%
!! TGGATTGCATTGATTAAGAA+AGG + chr4_1:66102359-66102378 Msa0565180:CDS 30.0%
TGATTAAGAAAGGTGATGAA+TGG + chr4_1:66102369-66102388 Msa0565180:CDS 30.0%
GATTAAGAAAGGTGATGAAT+GGG + chr4_1:66102370-66102389 Msa0565180:CDS 30.0%
AATCATGGAAAAGTTAGAAG+AGG + chr4_1:66102418-66102437 Msa0565180:CDS 30.0%
AAAGTTAGAAGAGGAGATAA+AGG + chr4_1:66102427-66102446 Msa0565180:CDS 30.0%
AAGTTAGAAGAGGAGATAAA+GGG + chr4_1:66102428-66102447 Msa0565180:CDS 30.0%
ATAAAGGGGAAGAAATTCTT+TGG + chr4_1:66102443-66102462 Msa0565180:CDS 30.0%
!! TCACTTGTTTTCTTCCAATT+TGG + chr4_1:66102507-66102526 Msa0565180:CDS 30.0%
!! CACTTGTTTTCTTCCAATTT+GGG + chr4_1:66102508-66102527 Msa0565180:CDS 30.0%
TTCCAATTTGGGAAGAAATT+GGG + chr4_1:66102519-66102538 Msa0565180:CDS 30.0%
!! AGATGGAAGGACATTTTAAT+GGG - chr4_1:66102562-66102581 None:intergenic 30.0%
TAAAGAATCATTTCATCCCT+TGG - chr4_1:66102638-66102657 None:intergenic 30.0%
ACCGGAACTTTCTTATGAAT+CGG - chr4_1:66101354-66101373 None:intergenic 35.0%
TGAGATCTTTGATAAGGATC+AGG - chr4_1:66101465-66101484 None:intergenic 35.0%
TGATCCTTATCAAAGATCTC+AGG + chr4_1:66101464-66101483 Msa0565180:CDS 35.0%
GGCTAAGTTATCTGATGAAA+AGG + chr4_1:66101497-66101516 Msa0565180:CDS 35.0%
GTGTTAATCATCCGGTTAAT+AGG + chr4_1:66101653-66101672 Msa0565180:intron 35.0%
GTTAATCATCCGGTTAATAG+GGG + chr4_1:66101655-66101674 Msa0565180:intron 35.0%
ATTTGAATGTATGCCTGGAA+TGG - chr4_1:66102004-66102023 None:intergenic 35.0%
AGTTAGAAGAGGAGATAAAG+GGG + chr4_1:66102429-66102448 Msa0565180:CDS 35.0%
CTTCCAATTTGGGAAGAAAT+TGG + chr4_1:66102518-66102537 Msa0565180:CDS 35.0%
! GAGATGGAAGGACATTTTAA+TGG - chr4_1:66102563-66102582 None:intergenic 35.0%
ATTGATCTTCCATGAAGAGA+TGG - chr4_1:66102579-66102598 None:intergenic 35.0%
AAGAATACTCCTTTATGCGA+CGG - chr4_1:66102667-66102686 None:intergenic 35.0%
TTCAACTCATCGTGGTTAAT+TGG + chr4_1:66102685-66102704 Msa0565180:exon 35.0%
ACCGGAACTTTCTTATGAAT+CGG - chr4_1:66101354-66101373 None:intergenic 35.0%
TGAGATCTTTGATAAGGATC+AGG - chr4_1:66101465-66101484 None:intergenic 35.0%
TGATCCTTATCAAAGATCTC+AGG + chr4_1:66101464-66101483 Msa0565180:CDS 35.0%
GGCTAAGTTATCTGATGAAA+AGG + chr4_1:66101497-66101516 Msa0565180:CDS 35.0%
GTGTTAATCATCCGGTTAAT+AGG + chr4_1:66101653-66101672 Msa0565180:intron 35.0%
GTTAATCATCCGGTTAATAG+GGG + chr4_1:66101655-66101674 Msa0565180:intron 35.0%
ATTTGAATGTATGCCTGGAA+TGG - chr4_1:66102004-66102023 None:intergenic 35.0%
AGTTAGAAGAGGAGATAAAG+GGG + chr4_1:66102429-66102448 Msa0565180:CDS 35.0%
CTTCCAATTTGGGAAGAAAT+TGG + chr4_1:66102518-66102537 Msa0565180:CDS 35.0%
! GAGATGGAAGGACATTTTAA+TGG - chr4_1:66102563-66102582 None:intergenic 35.0%
ATTGATCTTCCATGAAGAGA+TGG - chr4_1:66102579-66102598 None:intergenic 35.0%
AAGAATACTCCTTTATGCGA+CGG - chr4_1:66102667-66102686 None:intergenic 35.0%
TTCAACTCATCGTGGTTAAT+TGG + chr4_1:66102685-66102704 Msa0565180:exon 35.0%
AGTTAAGCAGCTTCACATCT+TGG - chr4_1:66101215-66101234 None:intergenic 40.0%
AGTTGGTCGTAGAGTTGAAT+GGG + chr4_1:66101248-66101267 Msa0565180:CDS 40.0%
!! TGAATGGGCTCTAAAACTCA+AGG + chr4_1:66101263-66101282 Msa0565180:CDS 40.0%
!! GAATGGGCTCTAAAACTCAA+GGG + chr4_1:66101264-66101283 Msa0565180:CDS 40.0%
CCGGAACTTTCTTATGAATC+GGG - chr4_1:66101353-66101372 None:intergenic 40.0%
CCCGATTCATAAGAAAGTTC+CGG + chr4_1:66101350-66101369 Msa0565180:CDS 40.0%
AAAGTTCCGGTTCTTGTTCA+TGG + chr4_1:66101363-66101382 Msa0565180:CDS 40.0%
! GTGACTCTGCAATTGATTTC+TGG - chr4_1:66101389-66101408 None:intergenic 40.0%
GATCTTTGATAAGGATCAGG+AGG - chr4_1:66101462-66101481 None:intergenic 40.0%
GAAAGGTGATGAATGGGAAA+AGG + chr4_1:66102376-66102395 Msa0565180:CDS 40.0%
! TGAATGGGAAAAGGCTCTAA+AGG + chr4_1:66102385-66102404 Msa0565180:CDS 40.0%
AAAGGAGGCAAGAGAAATCA+TGG + chr4_1:66102403-66102422 Msa0565180:CDS 40.0%
AAGGGGAAGAAATTCTTTGG+AGG + chr4_1:66102446-66102465 Msa0565180:CDS 40.0%
AGGGGAAGAAATTCTTTGGA+GGG + chr4_1:66102447-66102466 Msa0565180:CDS 40.0%
GACCCAATTTCTTCCCAAAT+TGG - chr4_1:66102524-66102543 None:intergenic 40.0%
AATGTCCTTCCATCTCTTCA+TGG + chr4_1:66102567-66102586 Msa0565180:CDS 40.0%
ATCTTCCATGAAGAGATGGA+AGG - chr4_1:66102575-66102594 None:intergenic 40.0%
! AACACTCCTTGATGATAGGA+TGG - chr4_1:66102610-66102629 None:intergenic 40.0%
AGAATCATTTCATCCCTTGG+TGG - chr4_1:66102635-66102654 None:intergenic 40.0%
GAGTATTCTTCAACTCATCG+TGG + chr4_1:66102677-66102696 Msa0565180:CDS 40.0%
! TTGGAAGCCTTGTAGATGAA+TGG + chr4_1:66102823-66102842 Msa0565180:three_prime_UTR 40.0%
AGTTAAGCAGCTTCACATCT+TGG - chr4_1:66101215-66101234 None:intergenic 40.0%
AGTTGGTCGTAGAGTTGAAT+GGG + chr4_1:66101248-66101267 Msa0565180:CDS 40.0%
!! TGAATGGGCTCTAAAACTCA+AGG + chr4_1:66101263-66101282 Msa0565180:CDS 40.0%
!! GAATGGGCTCTAAAACTCAA+GGG + chr4_1:66101264-66101283 Msa0565180:CDS 40.0%
CCGGAACTTTCTTATGAATC+GGG - chr4_1:66101353-66101372 None:intergenic 40.0%
CCCGATTCATAAGAAAGTTC+CGG + chr4_1:66101350-66101369 Msa0565180:CDS 40.0%
AAAGTTCCGGTTCTTGTTCA+TGG + chr4_1:66101363-66101382 Msa0565180:CDS 40.0%
! GTGACTCTGCAATTGATTTC+TGG - chr4_1:66101389-66101408 None:intergenic 40.0%
GATCTTTGATAAGGATCAGG+AGG - chr4_1:66101462-66101481 None:intergenic 40.0%
GAAAGGTGATGAATGGGAAA+AGG + chr4_1:66102376-66102395 Msa0565180:CDS 40.0%
! TGAATGGGAAAAGGCTCTAA+AGG + chr4_1:66102385-66102404 Msa0565180:CDS 40.0%
AAAGGAGGCAAGAGAAATCA+TGG + chr4_1:66102403-66102422 Msa0565180:CDS 40.0%
AAGGGGAAGAAATTCTTTGG+AGG + chr4_1:66102446-66102465 Msa0565180:CDS 40.0%
AGGGGAAGAAATTCTTTGGA+GGG + chr4_1:66102447-66102466 Msa0565180:CDS 40.0%
GACCCAATTTCTTCCCAAAT+TGG - chr4_1:66102524-66102543 None:intergenic 40.0%
AATGTCCTTCCATCTCTTCA+TGG + chr4_1:66102567-66102586 Msa0565180:CDS 40.0%
ATCTTCCATGAAGAGATGGA+AGG - chr4_1:66102575-66102594 None:intergenic 40.0%
! AACACTCCTTGATGATAGGA+TGG - chr4_1:66102610-66102629 None:intergenic 40.0%
AGAATCATTTCATCCCTTGG+TGG - chr4_1:66102635-66102654 None:intergenic 40.0%
GAGTATTCTTCAACTCATCG+TGG + chr4_1:66102677-66102696 Msa0565180:CDS 40.0%
! TTGGAAGCCTTGTAGATGAA+TGG + chr4_1:66102823-66102842 Msa0565180:three_prime_UTR 40.0%
CATTCAACTCTACGACCAAC+TGG - chr4_1:66101249-66101268 None:intergenic 45.0%
CAGTTGGTCGTAGAGTTGAA+TGG + chr4_1:66101247-66101266 Msa0565180:CDS 45.0%
TTCTGGCCATGAACAAGAAC+CGG - chr4_1:66101372-66101391 None:intergenic 45.0%
CGAGCCTGAGATCTTTGATA+AGG - chr4_1:66101471-66101490 None:intergenic 45.0%
! AAAGATCTCAGGCTCGCTTT+TGG + chr4_1:66101475-66101494 Msa0565180:CDS 45.0%
!! AAGATCTCAGGCTCGCTTTT+GGG + chr4_1:66101476-66101495 Msa0565180:CDS 45.0%
ATCATCCGGTTAATAGGGGA+AGG + chr4_1:66101659-66101678 Msa0565180:intron 45.0%
ACTCTCCTTCCCCTATTAAC+CGG - chr4_1:66101667-66101686 None:intergenic 45.0%
!! ATGGGAAAAGGCTCTAAAGG+AGG + chr4_1:66102388-66102407 Msa0565180:CDS 45.0%
! GGGGAAGAAATTCTTTGGAG+GGG + chr4_1:66102448-66102467 Msa0565180:CDS 45.0%
! TTCTTTGGAGGGGACACTAT+CGG + chr4_1:66102458-66102477 Msa0565180:CDS 45.0%
ACCTTGATCTTGCTCTTGGA+TGG + chr4_1:66102483-66102502 Msa0565180:CDS 45.0%
TCCATCCAAGAGCAAGATCA+AGG - chr4_1:66102487-66102506 None:intergenic 45.0%
TCTGAGCCATCCTATCATCA+AGG + chr4_1:66102601-66102620 Msa0565180:CDS 45.0%
! GGCAAACACTCCTTGATGAT+AGG - chr4_1:66102614-66102633 None:intergenic 45.0%
TTATTGCCACCGTCGCATAA+AGG + chr4_1:66102655-66102674 Msa0565180:CDS 45.0%
AATACTCCTTTATGCGACGG+TGG - chr4_1:66102664-66102683 None:intergenic 45.0%
CATTCAACTCTACGACCAAC+TGG - chr4_1:66101249-66101268 None:intergenic 45.0%
CAGTTGGTCGTAGAGTTGAA+TGG + chr4_1:66101247-66101266 Msa0565180:CDS 45.0%
TTCTGGCCATGAACAAGAAC+CGG - chr4_1:66101372-66101391 None:intergenic 45.0%
CGAGCCTGAGATCTTTGATA+AGG - chr4_1:66101471-66101490 None:intergenic 45.0%
! AAAGATCTCAGGCTCGCTTT+TGG + chr4_1:66101475-66101494 Msa0565180:CDS 45.0%
!! AAGATCTCAGGCTCGCTTTT+GGG + chr4_1:66101476-66101495 Msa0565180:CDS 45.0%
ATCATCCGGTTAATAGGGGA+AGG + chr4_1:66101659-66101678 Msa0565180:intron 45.0%
ACTCTCCTTCCCCTATTAAC+CGG - chr4_1:66101667-66101686 None:intergenic 45.0%
!! ATGGGAAAAGGCTCTAAAGG+AGG + chr4_1:66102388-66102407 Msa0565180:CDS 45.0%
! GGGGAAGAAATTCTTTGGAG+GGG + chr4_1:66102448-66102467 Msa0565180:CDS 45.0%
! TTCTTTGGAGGGGACACTAT+CGG + chr4_1:66102458-66102477 Msa0565180:CDS 45.0%
ACCTTGATCTTGCTCTTGGA+TGG + chr4_1:66102483-66102502 Msa0565180:CDS 45.0%
TCCATCCAAGAGCAAGATCA+AGG - chr4_1:66102487-66102506 None:intergenic 45.0%
TCTGAGCCATCCTATCATCA+AGG + chr4_1:66102601-66102620 Msa0565180:CDS 45.0%
! GGCAAACACTCCTTGATGAT+AGG - chr4_1:66102614-66102633 None:intergenic 45.0%
TTATTGCCACCGTCGCATAA+AGG + chr4_1:66102655-66102674 Msa0565180:CDS 45.0%
AATACTCCTTTATGCGACGG+TGG - chr4_1:66102664-66102683 None:intergenic 45.0%
TAAGGATCAGGAGGCAGCAA+TGG - chr4_1:66101453-66101472 None:intergenic 50.0%
GGAAGGAGAGTTCTCTCGAA+AGG + chr4_1:66101676-66101695 Msa0565180:intron 50.0%
! TATAGCTTGCGCTGGGTTCA+TGG + chr4_1:66102339-66102358 Msa0565180:intron 50.0%
! TCTTTGGAGGGGACACTATC+GGG + chr4_1:66102459-66102478 Msa0565180:CDS 50.0%
GGGTACCTTGATCTTGCTCT+TGG + chr4_1:66102479-66102498 Msa0565180:CDS 50.0%
!! TCAAGGAGTGTTTGCCACCA+AGG + chr4_1:66102618-66102637 Msa0565180:CDS 50.0%
!! CAAGGAGTGTTTGCCACCAA+GGG + chr4_1:66102619-66102638 Msa0565180:CDS 50.0%
GAAAGATGCGGCGACACTTA+TGG + chr4_1:66102853-66102872 Msa0565180:three_prime_UTR 50.0%
TAAGGATCAGGAGGCAGCAA+TGG - chr4_1:66101453-66101472 None:intergenic 50.0%
GGAAGGAGAGTTCTCTCGAA+AGG + chr4_1:66101676-66101695 Msa0565180:intron 50.0%
! TATAGCTTGCGCTGGGTTCA+TGG + chr4_1:66102339-66102358 Msa0565180:intron 50.0%
! TCTTTGGAGGGGACACTATC+GGG + chr4_1:66102459-66102478 Msa0565180:CDS 50.0%
GGGTACCTTGATCTTGCTCT+TGG + chr4_1:66102479-66102498 Msa0565180:CDS 50.0%
!! TCAAGGAGTGTTTGCCACCA+AGG + chr4_1:66102618-66102637 Msa0565180:CDS 50.0%
!! CAAGGAGTGTTTGCCACCAA+GGG + chr4_1:66102619-66102638 Msa0565180:CDS 50.0%
GAAAGATGCGGCGACACTTA+TGG + chr4_1:66102853-66102872 Msa0565180:three_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66101178 66102891 66101178 ID=Msa0565180;Name=Msa0565180
chr4_1 mRNA 66101178 66102891 66101178 ID=Msa0565180-mRNA-1;Parent=Msa0565180;Name=Msa0565180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=26|1|1|1|1|1|2|188|224
chr4_1 exon 66101178 66101518 66101178 ID=Msa0565180-mRNA-1:exon:21356;Parent=Msa0565180-mRNA-1
chr4_1 exon 66102344 66102891 66102344 ID=Msa0565180-mRNA-1:exon:21357;Parent=Msa0565180-mRNA-1
chr4_1 five_prime_UTR 66101178 66101203 66101178 ID=Msa0565180-mRNA-1:five_prime_utr;Parent=Msa0565180-mRNA-1
chr4_1 CDS 66101204 66101518 66101204 ID=Msa0565180-mRNA-1:cds;Parent=Msa0565180-mRNA-1
chr4_1 CDS 66102344 66102703 66102344 ID=Msa0565180-mRNA-1:cds;Parent=Msa0565180-mRNA-1
chr4_1 three_prime_UTR 66102704 66102891 66102704 ID=Msa0565180-mRNA-1:three_prime_utr;Parent=Msa0565180-mRNA-1
Gene Sequence

>Msa0565180

ATGAGAAACCAAGATGTGAAGCTGCTTAACTTTTTATTGAGTCCAGTTGGTCGTAGAGTTGAATGGGCTCTAAAACTCAAGGGTGTTGAGTATGATTATATAGAAGAAGATATCTTCAACAAAAGTAGTCTTCTTTTGGAATTGAACCCGATTCATAAGAAAGTTCCGGTTCTTGTTCATGGCCAGAAATCAATTGCAGAGTCACTGATTATTCTTGAATACATTGATGAAACATGGAAGCAATATCCATTGCTGCCTCCTGATCCTTATCAAAGATCTCAGGCTCGCTTTTGGGCTAAGTTATCTGATGAAAAGCTTGCGCTGGGTTCATGGATTGCATTGATTAAGAAAGGTGATGAATGGGAAAAGGCTCTAAAGGAGGCAAGAGAAATCATGGAAAAGTTAGAAGAGGAGATAAAGGGGAAGAAATTCTTTGGAGGGGACACTATCGGGTACCTTGATCTTGCTCTTGGATGGATCACTTGTTTTCTTCCAATTTGGGAAGAAATTGGGTCAACGCAGATACTTGACCCATTAAAATGTCCTTCCATCTCTTCATGGAAGATCAATTTTCTGAGCCATCCTATCATCAAGGAGTGTTTGCCACCAAGGGATGAAATGATTCTTTATTGCCACCGTCGCATAAAGGAGTATTCTTCAACTCATCGTGGTTAA

Protein sequence

>Msa0565180

MRNQDVKLLNFLLSPVGRRVEWALKLKGVEYDYIEEDIFNKSSLLLELNPIHKKVPVLVHGQKSIAESLIILEYIDETWKQYPLLPPDPYQRSQARFWAKLSDEKLALGSWIALIKKGDEWEKALKEAREIMEKLEEEIKGKKFFGGDTIGYLDLALGWITCFLPIWEEIGSTQILDPLKCPSISSWKINFLSHPIIKECLPPRDEMILYCHRRIKEYSSTHRG*