Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337960 | XP_003610264.1 | 96.386 | 498 | 16 | 1 | 1 | 498 | 1 | 496 | 0.0 | 990 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337960 | G7JFH8 | 96.386 | 498 | 16 | 1 | 1 | 498 | 1 | 496 | 0.0 | 990 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110500 | Msa1337960 | -0.810387 | 1.182101e-50 | -8.615850e-47 |
| Msa1264660 | Msa1337960 | 0.817094 | 3.940625e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337960 | MtrunA17_Chr4g0073561 | 96.386 | 498 | 16 | 1 | 1 | 498 | 1 | 496 | 0.0 | 990 |
| Msa1337960 | MtrunA17_Chr4g0001981 | 48.361 | 488 | 184 | 11 | 51 | 498 | 60 | 519 | 4.20e-131 | 390 |
| Msa1337960 | MtrunA17_Chr1g0192751 | 42.396 | 217 | 109 | 5 | 56 | 267 | 42 | 247 | 2.10e-44 | 160 |
| Msa1337960 | MtrunA17_Chr4g0073591 | 81.690 | 71 | 13 | 0 | 120 | 190 | 14 | 84 | 1.58e-36 | 131 |
| Msa1337960 | MtrunA17_Chr6g0453721 | 38.926 | 149 | 80 | 3 | 110 | 256 | 50 | 189 | 1.10e-25 | 104 |
| Msa1337960 | MtrunA17_Chr6g0453841 | 34.756 | 164 | 81 | 4 | 110 | 256 | 50 | 204 | 2.65e-19 | 87.0 |
| Msa1337960 | MtrunA17_Chr4g0073601 | 66.038 | 53 | 18 | 0 | 446 | 498 | 6 | 58 | 2.19e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337960 | AT2G24100.1 | 46.863 | 510 | 214 | 10 | 1 | 498 | 1 | 465 | 1.34e-130 | 387 |
| Msa1337960 | AT4G30780.1 | 50.990 | 404 | 139 | 12 | 1 | 360 | 1 | 389 | 1.06e-110 | 340 |
| Msa1337960 | AT4G30780.1 | 41.975 | 162 | 78 | 2 | 342 | 498 | 432 | 582 | 7.42e-20 | 93.2 |
| Msa1337960 | AT3G05770.2 | 41.364 | 220 | 114 | 6 | 48 | 257 | 17 | 231 | 1.14e-33 | 132 |
| Msa1337960 | AT3G05770.1 | 41.364 | 220 | 114 | 6 | 48 | 257 | 17 | 231 | 1.59e-33 | 131 |
| Msa1337960 | AT1G54300.1 | 43.671 | 158 | 79 | 4 | 109 | 257 | 2 | 158 | 1.06e-28 | 116 |
Find 130 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATCCTCGATCTCAAATT+TGG | 0.170910 | tig0001530:-59667 | None:intergenic |
| GATATGTCAAACAAGAATTT+TGG | 0.184107 | tig0001530:-64134 | None:intergenic |
| TCATGTGAATTGGGCACTGC+TGG | 0.262746 | tig0001530:-63945 | None:intergenic |
| ATCCCCTGAAGCCATTTCTT+TGG | 0.263985 | tig0001530:-63769 | None:intergenic |
| TGCCACAATGTGTGCTTTCT+AGG | 0.293917 | tig0001530:-60657 | None:intergenic |
| TAAACTATGTTTACTTGTTA+AGG | 0.295871 | tig0001530:+64368 | Msa1337960:three_prime_UTR |
| TCAGAAGATTAGTCCCGATT+TGG | 0.304438 | tig0001530:+64155 | Msa1337960:exon |
| GAGGACTCGAGAGATGTTTA+TGG | 0.319905 | tig0001530:+64032 | Msa1337960:CDS |
| TTGCCAAACAGAAGCTTGTT+TGG | 0.321183 | tig0001530:+60397 | Msa1337960:CDS |
| CTTAATGAGCCTAGCCCTTT+GGG | 0.327280 | tig0001530:+60050 | Msa1337960:CDS |
| TAATGCCATCCATCATTTCT+TGG | 0.333114 | tig0001530:-63821 | None:intergenic |
| GGATCCTCGATCTCAAATTT+GGG | 0.347298 | tig0001530:-59666 | None:intergenic |
| ACTATCAACGAGACTCAAAA+TGG | 0.348746 | tig0001530:-64331 | None:intergenic |
| GACACTTTGTCAAGAGAATT+CGG | 0.351718 | tig0001530:+60118 | Msa1337960:CDS |
| TCATAGGAGGCACTAGCATT+TGG | 0.352538 | tig0001530:+64228 | Msa1337960:three_prime_UTR |
| GCCCTTTGGGTTTAAGTCTC+AGG | 0.361134 | tig0001530:+60063 | Msa1337960:CDS |
| GCCCGTGTTGTCATGTGAAT+TGG | 0.371557 | tig0001530:-63955 | None:intergenic |
| ACTTAATGAGCCTAGCCCTT+TGG | 0.380538 | tig0001530:+60049 | Msa1337960:CDS |
| AGTTCTTATATTACCTGAAC+TGG | 0.384241 | tig0001530:-63016 | None:intergenic |
| TTCCCAAACAAGCTTCTGTT+TGG | 0.391805 | tig0001530:-60400 | None:intergenic |
| AAGCCAACAGCCAGAGATAA+TGG | 0.395009 | tig0001530:+62777 | Msa1337960:CDS |
| CAGAAGATTAGTCCCGATTT+GGG | 0.396073 | tig0001530:+64156 | Msa1337960:exon |
| CTCCAATCTTTCAGCAGAAA+AGG | 0.396852 | tig0001530:-63796 | None:intergenic |
| GCATCACATTTCCAAAGAAA+TGG | 0.397833 | tig0001530:+63758 | Msa1337960:CDS |
| ATTTCCAAAGAAATGGCTTC+AGG | 0.408201 | tig0001530:+63765 | Msa1337960:CDS |
| AGACGATTCCCATTGAGAAC+GGG | 0.414818 | tig0001530:-59622 | None:intergenic |
| TTCGCAGGGCACACTATCTA+AGG | 0.416227 | tig0001530:-62983 | None:intergenic |
| TGCCAAACAGAAGCTTGTTT+GGG | 0.418118 | tig0001530:+60398 | Msa1337960:CDS |
| TTCCTCGACATGCCTGGTGC+CGG | 0.420662 | tig0001530:-64062 | None:intergenic |
| ACATTCTGAAATTCCCAAAT+CGG | 0.428571 | tig0001530:-64169 | None:intergenic |
| AAATCGCTCATTGACATAGA+AGG | 0.430459 | tig0001530:-63720 | None:intergenic |
| CCTAAAGAAAAGAGGCTGTC+TGG | 0.437486 | tig0001530:-60619 | None:intergenic |
| AAAGATTGTGATTTGCATCA+AGG | 0.438860 | tig0001530:+62856 | Msa1337960:CDS |
| CATGTGAATTGGGCACTGCT+GGG | 0.440357 | tig0001530:-63944 | None:intergenic |
| GAAGCACCTTCCTCCAGTTC+AGG | 0.441844 | tig0001530:+63003 | Msa1337960:CDS |
| ACTGGAGGAAGGTGCTTCGC+AGG | 0.443629 | tig0001530:-62998 | None:intergenic |
| CTAAGAATCCCCGTTCTCAA+TGG | 0.462290 | tig0001530:+59613 | Msa1337960:CDS |
| CGGTCGTAAATGATGGAGAC+AGG | 0.464032 | tig0001530:-62936 | None:intergenic |
| GAAATATGAAGGTGACTTAG+TGG | 0.465278 | tig0001530:+60362 | Msa1337960:CDS |
| CTTGTTTGGGAAGTTCTTGA+GGG | 0.466937 | tig0001530:+60411 | Msa1337960:CDS |
| TGGGATCAAATAAAACTGCC+TGG | 0.467087 | tig0001530:+63690 | Msa1337960:CDS |
| GACAACACGGGCTCTATTGA+AGG | 0.467111 | tig0001530:+63966 | Msa1337960:CDS |
| AGAGAATTAAATTACCACTA+AGG | 0.468718 | tig0001530:-60520 | None:intergenic |
| TAATTCCGAAGCTGATTCAA+TGG | 0.472623 | tig0001530:+63656 | Msa1337960:CDS |
| AGGTCCATCATCAGGACAAT+TGG | 0.475804 | tig0001530:-60487 | None:intergenic |
| AAAAGTCAACATAGATATCA+AGG | 0.479802 | tig0001530:+64001 | Msa1337960:CDS |
| CTGTGCTCGGTCGTAAATGA+TGG | 0.481540 | tig0001530:-62943 | None:intergenic |
| TCTACGCTGTCTCTTACAAA+TGG | 0.481679 | tig0001530:+63917 | Msa1337960:CDS |
| AGGAGCATGTTGATCTTGAA+TGG | 0.481866 | tig0001530:-59688 | None:intergenic |
| CCCGTGTTGTCATGTGAATT+GGG | 0.482809 | tig0001530:-63954 | None:intergenic |
| TAAGAATCCCCGTTCTCAAT+GGG | 0.488381 | tig0001530:+59614 | Msa1337960:CDS |
| TGATCCCATTGAATCAGCTT+CGG | 0.488505 | tig0001530:-63661 | None:intergenic |
| ATGTGAATTGGGCACTGCTG+GGG | 0.492111 | tig0001530:-63943 | None:intergenic |
| ATGCAAAACCCTAACGGAAA+AGG | 0.495498 | tig0001530:-59528 | None:intergenic |
| ACCTAGCACATTGACCTTAG+TGG | 0.495667 | tig0001530:+60506 | Msa1337960:CDS |
| AGACTTAAACCCAAAGGGCT+AGG | 0.496309 | tig0001530:-60059 | None:intergenic |
| ACATCTGCTTAACGACAATC+AGG | 0.501367 | tig0001530:+63848 | Msa1337960:CDS |
| AGATGTTTATGGTGGCAATC+CGG | 0.504171 | tig0001530:+64043 | Msa1337960:CDS |
| TTTCCAAAGAAATGGCTTCA+GGG | 0.505175 | tig0001530:+63766 | Msa1337960:CDS |
| AGTGAATCAACCATTATCTC+TGG | 0.506506 | tig0001530:-62787 | None:intergenic |
| TTTATTGGTAATGTTAAGGA+TGG | 0.508236 | tig0001530:+64415 | Msa1337960:three_prime_UTR |
| AAAGCCAATTGTCCTGATGA+TGG | 0.508417 | tig0001530:+60483 | Msa1337960:CDS |
| CTATGTTTACTTGTTAAGGA+TGG | 0.510914 | tig0001530:+64372 | Msa1337960:three_prime_UTR |
| AGTAAACATAGTTTACTTGA+AGG | 0.511690 | tig0001530:-64360 | None:intergenic |
| GAGTCTTTCCTCGACATGCC+TGG | 0.511707 | tig0001530:-64068 | None:intergenic |
| CATTCTGAAATTCCCAAATC+GGG | 0.512987 | tig0001530:-64168 | None:intergenic |
| GCTTGTTTGGGAAGTTCTTG+AGG | 0.513290 | tig0001530:+60410 | Msa1337960:CDS |
| GACATAGAAGGACGGAGCCC+AGG | 0.513305 | tig0001530:-63708 | None:intergenic |
| TGTGAATTGGGCACTGCTGG+GGG | 0.513353 | tig0001530:-63942 | None:intergenic |
| ATGTCGAGGAAAGACTCATT+TGG | 0.515569 | tig0001530:+64074 | Msa1337960:CDS |
| ATTGGAGTACCAAGAAATGA+TGG | 0.518306 | tig0001530:+63812 | Msa1337960:CDS |
| AAAGTAAAATAGAAATTCAA+TGG | 0.521653 | tig0001530:+60442 | Msa1337960:CDS |
| TCCTGAGACTTAAACCCAAA+GGG | 0.525740 | tig0001530:-60064 | None:intergenic |
| AATTCCGAAGCTGATTCAAT+GGG | 0.530308 | tig0001530:+63657 | Msa1337960:CDS |
| TTGCATCAAGGCAAGGGCAA+TGG | 0.532360 | tig0001530:+62868 | Msa1337960:CDS |
| AATGTGTGCTTTCTAGGTTG+AGG | 0.532693 | tig0001530:-60651 | None:intergenic |
| CAGTATAAATCGAAATATGA+AGG | 0.533390 | tig0001530:+60351 | Msa1337960:intron |
| AAGAATATACCTATGTGTGC+TGG | 0.533619 | tig0001530:-60709 | None:intergenic |
| ATTCAATGGGATCAAGACAC+TGG | 0.534654 | tig0001530:+63670 | Msa1337960:CDS |
| TTTGGAAGAGATGCAATTCG+AGG | 0.535660 | tig0001530:-64116 | None:intergenic |
| ACTTAAGTCGGTCGTTACAC+TGG | 0.536403 | tig0001530:-62750 | None:intergenic |
| TTGTGATTTGCATCAAGGCA+AGG | 0.538238 | tig0001530:+62861 | Msa1337960:CDS |
| GGAGCATGTTGATCTTGAAT+GGG | 0.540041 | tig0001530:-59687 | None:intergenic |
| TGCTTCAGTTGAAAAGCTGA+AGG | 0.545025 | tig0001530:+60196 | Msa1337960:CDS |
| GATGGAGACAGGGATGAATG+AGG | 0.546725 | tig0001530:-62925 | None:intergenic |
| TATGGTGGCAATCCGGCACC+AGG | 0.548784 | tig0001530:+64050 | Msa1337960:CDS |
| CAACCATTATCTCTGGCTGT+TGG | 0.549994 | tig0001530:-62780 | None:intergenic |
| TTCCAAAGAAATGGCTTCAG+GGG | 0.550738 | tig0001530:+63767 | Msa1337960:CDS |
| TGTGATTTGCATCAAGGCAA+GGG | 0.551177 | tig0001530:+62862 | Msa1337960:CDS |
| ATGTGTGCTGGCCTGTCCAC+CGG | 0.553837 | tig0001530:-60697 | None:intergenic |
| AATGTGCTAGGTCCATCATC+AGG | 0.555133 | tig0001530:-60495 | None:intergenic |
| TGTATCAAATCTAACAGCGA+AGG | 0.555578 | tig0001530:-60092 | None:intergenic |
| TTAGTCTCCCTAAAGAAAAG+AGG | 0.560643 | tig0001530:-60627 | None:intergenic |
| AGCAGAAGGATCACTGTGCT+CGG | 0.561280 | tig0001530:-62956 | None:intergenic |
| CCATCAAAATTTAGAGTCAA+CGG | 0.566227 | tig0001530:-59575 | None:intergenic |
| GGGATCAAATAAAACTGCCT+GGG | 0.569804 | tig0001530:+63691 | Msa1337960:CDS |
| AAGACGATTCCCATTGAGAA+CGG | 0.569958 | tig0001530:-59623 | None:intergenic |
| GGAAAAGGACGTGAAGGAGA+AGG | 0.573747 | tig0001530:-59513 | None:intergenic |
| CTGGAGGAAGGTGCTTCGCA+GGG | 0.580583 | tig0001530:-62997 | None:intergenic |
| TCTTATATTACCTGAACTGG+AGG | 0.586999 | tig0001530:-63013 | None:intergenic |
| TTCTCAATAGCAGCGGATCG+TGG | 0.587619 | tig0001530:-62820 | None:intergenic |
| ATATTACCTGAACTGGAGGA+AGG | 0.594740 | tig0001530:-63009 | None:intergenic |
| AATCTTTCAGCAGAAAAGGA+AGG | 0.598358 | tig0001530:-63792 | None:intergenic |
| ACCACTAAGGTCAATGTGCT+AGG | 0.600691 | tig0001530:-60507 | None:intergenic |
| GCCCAATTCACATGACAACA+CGG | 0.601317 | tig0001530:+63953 | Msa1337960:CDS |
| GAAAAGGACGTGAAGGAGAA+GGG | 0.601910 | tig0001530:-59512 | None:intergenic |
| GACGATTCCCATTGAGAACG+GGG | 0.602790 | tig0001530:-59621 | None:intergenic |
| GATCCTCGATCTCAAATTTG+GGG | 0.605147 | tig0001530:-59665 | None:intergenic |
| ACTTTGTGACGCTTGTTGAG+AGG | 0.605272 | tig0001530:-59708 | None:intergenic |
| TTCCTGAGACTTAAACCCAA+AGG | 0.606349 | tig0001530:-60065 | None:intergenic |
| AGATATCAAGGCTACTGAAG+AGG | 0.606877 | tig0001530:+64013 | Msa1337960:CDS |
| AACAGAATGCAAAACCCTAA+CGG | 0.610835 | tig0001530:-59534 | None:intergenic |
| CTATCTAAGGTAATAGCAGA+AGG | 0.611346 | tig0001530:-62970 | None:intergenic |
| GTATCAAATCTAACAGCGAA+GGG | 0.619004 | tig0001530:-60091 | None:intergenic |
| CGCTCATTGACATAGAAGGA+CGG | 0.621047 | tig0001530:-63716 | None:intergenic |
| TTCAATGGGATCAAGACACT+GGG | 0.626122 | tig0001530:+63671 | Msa1337960:CDS |
| GAGTACCAAGAAATGATGGA+TGG | 0.630044 | tig0001530:+63816 | Msa1337960:CDS |
| CCTAACGGAAAAGGACGTGA+AGG | 0.637569 | tig0001530:-59519 | None:intergenic |
| TCCCATGTTCTGAAAACGAG+AGG | 0.639975 | tig0001530:-62899 | None:intergenic |
| TTTAAACTCTAAAGCAAACA+AGG | 0.644174 | tig0001530:+60166 | Msa1337960:CDS |
| GTTGGCTTAAGAACTTAAGT+CGG | 0.644282 | tig0001530:-62762 | None:intergenic |
| GTCAACGGAGAAGAAATCGA+AGG | 0.648412 | tig0001530:-59560 | None:intergenic |
| GGTCGTAAATGATGGAGACA+GGG | 0.654834 | tig0001530:-62935 | None:intergenic |
| GTGGACAGGCCAGCACACAT+AGG | 0.655241 | tig0001530:+60700 | Msa1337960:CDS |
| GACTCGAGAGATGTTTATGG+TGG | 0.656722 | tig0001530:+64035 | Msa1337960:CDS |
| CCCAATTCACATGACAACAC+GGG | 0.664172 | tig0001530:+63954 | Msa1337960:CDS |
| ATCCTCGATCTCAAATTTGG+GGG | 0.664332 | tig0001530:-59664 | None:intergenic |
| GTGAGGGTTCTCAATAGCAG+CGG | 0.669144 | tig0001530:-62827 | None:intergenic |
| AACCTAGAAAGCACACATTG+TGG | 0.694172 | tig0001530:+60655 | Msa1337960:CDS |
| TGGAAATGTGATGCTCAATG+TGG | 0.744777 | tig0001530:-63749 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATGTTTACTTTTATTT+TGG | + | tig0001530:59968-59987 | Msa1337960:intron | 10.0% |
| !!! | ATAATGTTTACTTTTATTTT+GGG | + | tig0001530:59969-59988 | Msa1337960:intron | 10.0% |
| !! | TTCTATTAAGATTTATTTAT+TGG | + | tig0001530:61030-61049 | Msa1337960:intron | 10.0% |
| !! | TCTATTAAGATTTATTTATT+GGG | + | tig0001530:61031-61050 | Msa1337960:intron | 10.0% |
| !! | TTTCATTTAAATGTAAAAAA+AGG | + | tig0001530:61519-61538 | Msa1337960:intron | 10.0% |
| !! | AAATTATCATTAGAAAAAAT+TGG | + | tig0001530:61972-61991 | Msa1337960:intron | 10.0% |
| !! | AATTATCATTAGAAAAAATT+GGG | + | tig0001530:61973-61992 | Msa1337960:intron | 10.0% |
| !!! | CTTTTTATTTATAGTTTAAT+AGG | + | tig0001530:62438-62457 | Msa1337960:intron | 10.0% |
| !! | AAAGTAAAATAGAAATTCAA+TGG | + | tig0001530:60442-60461 | Msa1337960:CDS | 15.0% |
| !! | TAAATCTATATGATTATGAA+TGG | - | tig0001530:60779-60798 | None:intergenic | 15.0% |
| !!! | TAAAAGTACATTAATTTTGT+TGG | + | tig0001530:60797-60816 | Msa1337960:intron | 15.0% |
| !!! | AATCTCTAATATTTTACATA+GGG | - | tig0001530:60859-60878 | None:intergenic | 15.0% |
| !! | ACCTTAAAAAAAATTACAAA+AGG | + | tig0001530:61125-61144 | Msa1337960:intron | 15.0% |
| !!! | ACCTTTTGTAATTTTTTTTA+AGG | - | tig0001530:61129-61148 | None:intergenic | 15.0% |
| !! | TGAATTAAAATTAATGTTCA+GGG | - | tig0001530:61406-61425 | None:intergenic | 15.0% |
| !! | TAAAATAACAGAAATTAGTT+GGG | - | tig0001530:61492-61511 | None:intergenic | 15.0% |
| !! | TTAAAATAACAGAAATTAGT+TGG | - | tig0001530:61493-61512 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTTACTAAACTT+AGG | + | tig0001530:61721-61740 | Msa1337960:intron | 15.0% |
| !!! | TTCAATTTTTACTAAACTTA+GGG | + | tig0001530:61722-61741 | Msa1337960:intron | 15.0% |
| !!! | AATTGATAATACTTTTAATG+CGG | + | tig0001530:62105-62124 | Msa1337960:intron | 15.0% |
| !!! | TATTTTACTGATATTTTACT+TGG | - | tig0001530:63316-63335 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTTCTTCTTCAT+AGG | + | tig0001530:64212-64231 | Msa1337960:three_prime_UTR | 15.0% |
| !!! | ATTATTTTAATGAAGAATCT+TGG | + | tig0001530:64253-64272 | Msa1337960:three_prime_UTR | 15.0% |
| !!! | TTTTTTTATTGGTAATGTTA+AGG | + | tig0001530:64411-64430 | Msa1337960:three_prime_UTR | 15.0% |
| !! | ACCATAATTAATGAGAAAAA+GGG | - | tig0001530:59999-60018 | None:intergenic | 20.0% |
| !! | AACCATAATTAATGAGAAAA+AGG | - | tig0001530:60000-60019 | None:intergenic | 20.0% |
| !!! | ACATTTAAAAATTGGTTCAT+GGG | + | tig0001530:60238-60257 | Msa1337960:CDS | 20.0% |
| !!! | ATCTCTAATATTTTACATAG+GGG | - | tig0001530:60858-60877 | None:intergenic | 20.0% |
| !!! | CAATCTCTAATATTTTACAT+AGG | - | tig0001530:60860-60879 | None:intergenic | 20.0% |
| !!! | ATTAGAGATTGATTTTCAAA+TGG | + | tig0001530:60869-60888 | Msa1337960:intron | 20.0% |
| !!! | TTAGAGATTGATTTTCAAAT+GGG | + | tig0001530:60870-60889 | Msa1337960:intron | 20.0% |
| !!! | ACTTATTTCTTCTTCTTTTT+CGG | + | tig0001530:61365-61384 | Msa1337960:intron | 20.0% |
| !! | GTGAATTAAAATTAATGTTC+AGG | - | tig0001530:61407-61426 | None:intergenic | 20.0% |
| !! | AAACTTGACCAAATAAATAA+GGG | - | tig0001530:61820-61839 | None:intergenic | 20.0% |
| !! | TAAACTTGACCAAATAAATA+AGG | - | tig0001530:61821-61840 | None:intergenic | 20.0% |
| !!! | ATTTTTTACTTTGCATTGTT+TGG | + | tig0001530:61843-61862 | Msa1337960:intron | 20.0% |
| !! | TTTATAGTTTAATAGGGTTA+TGG | + | tig0001530:62445-62464 | Msa1337960:intron | 20.0% |
| !!! | TCATATTTTCAATAATGCTA+TGG | + | tig0001530:62481-62500 | Msa1337960:intron | 20.0% |
| !!! | ATTTTGATTGTGTTACATAA+GGG | + | tig0001530:63047-63066 | Msa1337960:intron | 20.0% |
| !! | AATGATTGAAAACTTATCAA+TGG | + | tig0001530:63153-63172 | Msa1337960:intron | 20.0% |
| !!! | TCTTCTAAAATTTGTCAAAT+GGG | + | tig0001530:63382-63401 | Msa1337960:intron | 20.0% |
| !! | CCAAAACACATTAATAAATA+AGG | - | tig0001530:63591-63610 | None:intergenic | 20.0% |
| !!! | CCTTATTTATTAATGTGTTT+TGG | + | tig0001530:63588-63607 | Msa1337960:intron | 20.0% |
| !!! | TAAACTATGTTTACTTGTTA+AGG | + | tig0001530:64368-64387 | Msa1337960:three_prime_UTR | 20.0% |
| !! | TCCCTTTTTCTCATTAATTA+TGG | + | tig0001530:59995-60014 | Msa1337960:intron | 25.0% |
| !!! | TTTAAACTCTAAAGCAAACA+AGG | + | tig0001530:60166-60185 | Msa1337960:CDS | 25.0% |
| !! | CAATTTTTAAATGTGTAGCT+GGG | - | tig0001530:60232-60251 | None:intergenic | 25.0% |
| !! | CACATTTAAAAATTGGTTCA+TGG | + | tig0001530:60237-60256 | Msa1337960:CDS | 25.0% |
| ! | CAGTATAAATCGAAATATGA+AGG | + | tig0001530:60351-60370 | Msa1337960:intron | 25.0% |
| ! | AGAGAATTAAATTACCACTA+AGG | - | tig0001530:60523-60542 | None:intergenic | 25.0% |
| ! | ATTCATAAATCATTGAACAC+AGG | - | tig0001530:60578-60597 | None:intergenic | 25.0% |
| !!! | TAATTTGCTTATAGTATCTG+TGG | + | tig0001530:60964-60983 | Msa1337960:intron | 25.0% |
| ! | TTATAGTATCTGTGGAATTT+AGG | + | tig0001530:60972-60991 | Msa1337960:intron | 25.0% |
| !!! | TATTTTTAGGGTCCATATTA+GGG | - | tig0001530:61060-61079 | None:intergenic | 25.0% |
| !!! | TTATTTTTAGGGTCCATATT+AGG | - | tig0001530:61061-61080 | None:intergenic | 25.0% |
| ! | AATATGGACCCTAAAAATAA+AGG | + | tig0001530:61061-61080 | Msa1337960:intron | 25.0% |
| !! | TCTATGTAGAAAATTTTCGA+TGG | - | tig0001530:61265-61284 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAAATGCAA+TGG | - | tig0001530:61321-61340 | None:intergenic | 25.0% |
| !! | TTTTGCACATAAATTTTCTC+TGG | + | tig0001530:61326-61345 | Msa1337960:intron | 25.0% |
| ! | AATATGGACCTCAAAAATAA+AGG | - | tig0001530:61790-61809 | None:intergenic | 25.0% |
| !!! | TTATTTTTGAGGTCCATATT+AGG | + | tig0001530:61790-61809 | Msa1337960:intron | 25.0% |
| !!! | TATTTTTGAGGTCCATATTA+GGG | + | tig0001530:61791-61810 | Msa1337960:intron | 25.0% |
| ! | GAGTTCCTAATAAAATTCAA+CGG | + | tig0001530:62147-62166 | Msa1337960:intron | 25.0% |
| !! | TAGTACCGTTGAATTTTATT+AGG | - | tig0001530:62155-62174 | None:intergenic | 25.0% |
| ! | TAATAAAATTCAACGGTACT+AGG | + | tig0001530:62154-62173 | Msa1337960:intron | 25.0% |
| !! | GTTTTTGCAATACAATGATT+TGG | + | tig0001530:62253-62272 | Msa1337960:intron | 25.0% |
| !!! | AGTTGAGTTTAGTCTTTTTA+AGG | + | tig0001530:62320-62339 | Msa1337960:intron | 25.0% |
| ! | GAAGTTATAAAATCACAAGA+TGG | - | tig0001530:62670-62689 | None:intergenic | 25.0% |
| !! | CTTGTGATTTTATAACTTCT+AGG | + | tig0001530:62671-62690 | Msa1337960:intron | 25.0% |
| !!! | GATTTTGATTGTGTTACATA+AGG | + | tig0001530:63046-63065 | Msa1337960:intron | 25.0% |
| !!! | TTTTGATTGTGTTACATAAG+GGG | + | tig0001530:63048-63067 | Msa1337960:intron | 25.0% |
| ! | AAAATTTCTTCTTTGCTTGT+TGG | + | tig0001530:63128-63147 | Msa1337960:intron | 25.0% |
| ! | ATTAGTTCAGTTGAAGTTTA+TGG | - | tig0001530:63275-63294 | None:intergenic | 25.0% |
| ! | ATTTCATAATCTATGCTTCT+TGG | - | tig0001530:63360-63379 | None:intergenic | 25.0% |
| !!! | CTCTTCTAAAATTTGTCAAA+TGG | + | tig0001530:63381-63400 | Msa1337960:intron | 25.0% |
| !! | TGACATAAGTGATTTTTCAT+CGG | - | tig0001530:63886-63905 | None:intergenic | 25.0% |
| ! | ATGAAAAATCACTTATGTCA+AGG | + | tig0001530:63886-63905 | Msa1337960:CDS | 25.0% |
| ! | TGAAAAATCACTTATGTCAA+GGG | + | tig0001530:63887-63906 | Msa1337960:CDS | 25.0% |
| ! | AAAAGTCAACATAGATATCA+AGG | + | tig0001530:64001-64020 | Msa1337960:CDS | 25.0% |
| !! | GATATGTCAAACAAGAATTT+TGG | - | tig0001530:64137-64156 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCTTCTTCATAGG+AGG | + | tig0001530:64215-64234 | Msa1337960:three_prime_UTR | 25.0% |
| ! | AGTAAACATAGTTTACTTGA+AGG | - | tig0001530:64363-64382 | None:intergenic | 25.0% |
| !!! | TTTATTGGTAATGTTAAGGA+TGG | + | tig0001530:64415-64434 | Msa1337960:three_prime_UTR | 25.0% |
| ! | CCATCAAAATTTAGAGTCAA+CGG | - | tig0001530:59578-59597 | None:intergenic | 30.0% |
| !! | GACTCTAAATTTTGATGGTT+CGG | + | tig0001530:59580-59599 | Msa1337960:exon | 30.0% |
| !!! | AATTTTGATGGTTCGGTTTA+TGG | + | tig0001530:59587-59606 | Msa1337960:exon | 30.0% |
| !!! | ATTTTGATGGTTCGGTTTAT+GGG | + | tig0001530:59588-59607 | Msa1337960:exon | 30.0% |
| !!! | TATGGTTTTGCGTTTTGTTT+AGG | + | tig0001530:60013-60032 | Msa1337960:intron | 30.0% |
| ! | CCAATTTTTAAATGTGTAGC+TGG | - | tig0001530:60233-60252 | None:intergenic | 30.0% |
| CCAGCTACACATTTAAAAAT+TGG | + | tig0001530:60230-60249 | Msa1337960:CDS | 30.0% | |
| ! | TTTAAAAATTGGTTCATGGG+AGG | + | tig0001530:60241-60260 | Msa1337960:CDS | 30.0% |
| TGAATGATATTGTGAATTGC+AGG | + | tig0001530:60593-60612 | Msa1337960:intron | 30.0% | |
| !! | ATAACTTGTTGAAATCGTTG+AGG | + | tig0001530:60925-60944 | Msa1337960:intron | 30.0% |
| GAAATGCTTGTGTACAAAAA+AGG | - | tig0001530:61003-61022 | None:intergenic | 30.0% | |
| TTGTAGTAGGTAATATGTAC+AGG | - | tig0001530:61099-61118 | None:intergenic | 30.0% | |
| TACATATTACCTACTACAAC+AGG | + | tig0001530:61100-61119 | Msa1337960:intron | 30.0% | |
| AATTACAAAAGGTTAGAGCA+AGG | + | tig0001530:61136-61155 | Msa1337960:intron | 30.0% | |
| TCTACATAGATCTATGATGT+TGG | + | tig0001530:61275-61294 | Msa1337960:intron | 30.0% | |
| TTATGTTGTTAATTCTCCCT+GGG | - | tig0001530:61549-61568 | None:intergenic | 30.0% | |
| TTTATGTTGTTAATTCTCCC+TGG | - | tig0001530:61550-61569 | None:intergenic | 30.0% | |
| AACAACAACTAAGTGACATT+GGG | - | tig0001530:61580-61599 | None:intergenic | 30.0% | |
| TAACAACAACTAAGTGACAT+TGG | - | tig0001530:61581-61600 | None:intergenic | 30.0% | |
| AGATTTGATAAGCAAGCTTA+TGG | - | tig0001530:61612-61631 | None:intergenic | 30.0% | |
| !!! | ATTTTTGAGGTCCATATTAG+GGG | + | tig0001530:61792-61811 | Msa1337960:intron | 30.0% |
| CTACACTAAACAAATGGAAT+AGG | - | tig0001530:61885-61904 | None:intergenic | 30.0% | |
| GTTTCTCTACACTAAACAAA+TGG | - | tig0001530:61891-61910 | None:intergenic | 30.0% | |
| TTGCTCTTCCTAGAAAAAAT+CGG | + | tig0001530:61929-61948 | Msa1337960:intron | 30.0% | |
| !! | ATTTTGACCCGATTTTTTCT+AGG | - | tig0001530:61940-61959 | None:intergenic | 30.0% |
| GAGAAGAAGCAAAAAAAACA+TGG | - | tig0001530:62056-62075 | None:intergenic | 30.0% | |
| ! | ATTTGAAGTAAAATAGCTGC+TGG | + | tig0001530:62078-62097 | Msa1337960:intron | 30.0% |
| CACATGATTATTTGCGTATT+TGG | + | tig0001530:62213-62232 | Msa1337960:intron | 30.0% | |
| !!! | GTTTGTTTGCTTTTGAGTTA+GGG | - | tig0001530:62285-62304 | None:intergenic | 30.0% |
| !!! | AGTTTGTTTGCTTTTGAGTT+AGG | - | tig0001530:62286-62305 | None:intergenic | 30.0% |
| ! | AATTGATAATCACAATACGC+AGG | - | tig0001530:62573-62592 | None:intergenic | 30.0% |
| ! | CACAATCTTTTAGATTGTGA+GGG | - | tig0001530:62846-62865 | None:intergenic | 30.0% |
| ! | TCACAATCTTTTAGATTGTG+AGG | - | tig0001530:62847-62866 | None:intergenic | 30.0% |
| ! | AAAGATTGTGATTTGCATCA+AGG | + | tig0001530:62856-62875 | Msa1337960:CDS | 30.0% |
| AGTTCTTATATTACCTGAAC+TGG | - | tig0001530:63019-63038 | None:intergenic | 30.0% | |
| GTTCAGGTAATATAAGAACT+TGG | + | tig0001530:63019-63038 | Msa1337960:intron | 30.0% | |
| AACTTATCAATGGAAAGATG+AGG | + | tig0001530:63163-63182 | Msa1337960:intron | 30.0% | |
| TTAAACATGATGATCCTAAG+AGG | - | tig0001530:63243-63262 | None:intergenic | 30.0% | |
| !! | ACATTCTGAAATTCCCAAAT+CGG | - | tig0001530:64172-64191 | None:intergenic | 30.0% |
| !! | ACCTAGAAATGTTTTTACAC+GGG | - | tig0001530:64284-64303 | None:intergenic | 30.0% |
| !! | CACCTAGAAATGTTTTTACA+CGG | - | tig0001530:64285-64304 | None:intergenic | 30.0% |
| ! | CTATGTTTACTTGTTAAGGA+TGG | + | tig0001530:64372-64391 | Msa1337960:three_prime_UTR | 30.0% |
| AACAGAATGCAAAACCCTAA+CGG | - | tig0001530:59537-59556 | None:intergenic | 35.0% | |
| !!! | CCGTTGACTCTAAATTTTGA+TGG | + | tig0001530:59575-59594 | Msa1337960:exon | 35.0% |
| GTATCAAATCTAACAGCGAA+GGG | - | tig0001530:60094-60113 | None:intergenic | 35.0% | |
| TGTATCAAATCTAACAGCGA+AGG | - | tig0001530:60095-60114 | None:intergenic | 35.0% | |
| GACACTTTGTCAAGAGAATT+CGG | + | tig0001530:60118-60137 | Msa1337960:CDS | 35.0% | |
| ! | TGCATGTGGTTTTTCGTTTT+GGG | + | tig0001530:60278-60297 | Msa1337960:intron | 35.0% |
| GAAATATGAAGGTGACTTAG+TGG | + | tig0001530:60362-60381 | Msa1337960:CDS | 35.0% | |
| AACACACATGTAATTACGTG+TGG | + | tig0001530:60544-60563 | Msa1337960:intron | 35.0% | |
| TTAGTCTCCCTAAAGAAAAG+AGG | - | tig0001530:60630-60649 | None:intergenic | 35.0% | |
| ! | CAATCAACGACAGATTTTAC+CGG | + | tig0001530:60678-60697 | Msa1337960:CDS | 35.0% |
| AAGAATATACCTATGTGTGC+TGG | - | tig0001530:60712-60731 | None:intergenic | 35.0% | |
| AGCAAACATCCACATATCAA+AGG | - | tig0001530:60746-60765 | None:intergenic | 35.0% | |
| ! | TGGTTTGTCATAAACTGTGT+AGG | + | tig0001530:60817-60836 | Msa1337960:intron | 35.0% |
| TTTATTGGGAGTCCCTAATA+TGG | + | tig0001530:61045-61064 | Msa1337960:intron | 35.0% | |
| !!! | TGGGTGGACCTTTATTTTTA+GGG | - | tig0001530:61072-61091 | None:intergenic | 35.0% |
| !!! | ATGGGTGGACCTTTATTTTT+AGG | - | tig0001530:61073-61092 | None:intergenic | 35.0% |
| TAAAAATAAAGGTCCACCCA+TGG | + | tig0001530:61072-61091 | Msa1337960:intron | 35.0% | |
| TTAAGGTAACCTGTTGTAGT+AGG | - | tig0001530:61112-61131 | None:intergenic | 35.0% | |
| GAATTGAAAGAGAGTTGGAA+AGG | + | tig0001530:61209-61228 | Msa1337960:intron | 35.0% | |
| GAGAGTTGGAAAGGAATATT+TGG | + | tig0001530:61218-61237 | Msa1337960:intron | 35.0% | |
| GTTGGAAAGGAATATTTGGT+TGG | + | tig0001530:61222-61241 | Msa1337960:intron | 35.0% | |
| ACACAAGGCAGGATAATAAA+AGG | - | tig0001530:61440-61459 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGTTTCTGTTATGC+AGG | - | tig0001530:61471-61490 | None:intergenic | 35.0% |
| ATGTAAAAAAAGGATTCCCC+AGG | + | tig0001530:61529-61548 | Msa1337960:intron | 35.0% | |
| TGTAAAAAAAGGATTCCCCA+GGG | + | tig0001530:61530-61549 | Msa1337960:intron | 35.0% | |
| TATGTTGTTAATTCTCCCTG+GGG | - | tig0001530:61548-61567 | None:intergenic | 35.0% | |
| CTATAGCAGGTAATATGCAT+GGG | + | tig0001530:61752-61771 | Msa1337960:intron | 35.0% | |
| CAAAAATAAAGGTCCACCAA+TGG | - | tig0001530:61779-61798 | None:intergenic | 35.0% | |
| !!! | TTGGTGGACCTTTATTTTTG+AGG | + | tig0001530:61779-61798 | Msa1337960:intron | 35.0% |
| TGCTCTTCCTAGAAAAAATC+GGG | + | tig0001530:61930-61949 | Msa1337960:intron | 35.0% | |
| TAATGATAAAACCAGCAGCA+GGG | - | tig0001530:62545-62564 | None:intergenic | 35.0% | |
| TTAATGATAAAACCAGCAGC+AGG | - | tig0001530:62546-62565 | None:intergenic | 35.0% | |
| ! | CATGTTTTGCAATGTGAACA+AGG | + | tig0001530:62697-62716 | Msa1337960:CDS | 35.0% |
| ! | GTTGGCTTAAGAACTTAAGT+CGG | - | tig0001530:62765-62784 | None:intergenic | 35.0% |
| AGTGAATCAACCATTATCTC+TGG | - | tig0001530:62790-62809 | None:intergenic | 35.0% | |
| ! | CTATCTAAGGTAATAGCAGA+AGG | - | tig0001530:62973-62992 | None:intergenic | 35.0% |
| TCTTATATTACCTGAACTGG+AGG | - | tig0001530:63016-63035 | None:intergenic | 35.0% | |
| TTGTTATAGATCTGCCTCTT+AGG | + | tig0001530:63226-63245 | Msa1337960:intron | 35.0% | |
| ! | TAATTCCGAAGCTGATTCAA+TGG | + | tig0001530:63656-63675 | Msa1337960:CDS | 35.0% |
| ! | AATTCCGAAGCTGATTCAAT+GGG | + | tig0001530:63657-63676 | Msa1337960:CDS | 35.0% |
| AAATCGCTCATTGACATAGA+AGG | - | tig0001530:63723-63742 | None:intergenic | 35.0% | |
| ! | ATGTCAATGAGCGATTTTCT+TGG | + | tig0001530:63726-63745 | Msa1337960:CDS | 35.0% |
| GCATCACATTTCCAAAGAAA+TGG | + | tig0001530:63758-63777 | Msa1337960:CDS | 35.0% | |
| ATTTCCAAAGAAATGGCTTC+AGG | + | tig0001530:63765-63784 | Msa1337960:CDS | 35.0% | |
| TTTCCAAAGAAATGGCTTCA+GGG | + | tig0001530:63766-63785 | Msa1337960:CDS | 35.0% | |
| AATCTTTCAGCAGAAAAGGA+AGG | - | tig0001530:63795-63814 | None:intergenic | 35.0% | |
| ! | TTCCTTTTCTGCTGAAAGAT+TGG | + | tig0001530:63794-63813 | Msa1337960:CDS | 35.0% |
| ! | ATTGGAGTACCAAGAAATGA+TGG | + | tig0001530:63812-63831 | Msa1337960:CDS | 35.0% |
| TAATGCCATCCATCATTTCT+TGG | - | tig0001530:63824-63843 | None:intergenic | 35.0% | |
| !! | CATTCTGAAATTCCCAAATC+GGG | - | tig0001530:64171-64190 | None:intergenic | 35.0% |
| ACTATCAACGAGACTCAAAA+TGG | - | tig0001530:64334-64353 | None:intergenic | 35.0% | |
| ATGCAAAACCCTAACGGAAA+AGG | - | tig0001530:59531-59550 | None:intergenic | 40.0% | |
| TAAGAATCCCCGTTCTCAAT+GGG | + | tig0001530:59614-59633 | Msa1337960:CDS | 40.0% | |
| AAGACGATTCCCATTGAGAA+CGG | - | tig0001530:59626-59645 | None:intergenic | 40.0% | |
| GATCTCAAATTTGGGGGAAA+TGG | - | tig0001530:59661-59680 | None:intergenic | 40.0% | |
| ATCCTCGATCTCAAATTTGG+GGG | - | tig0001530:59667-59686 | None:intergenic | 40.0% | |
| GATCCTCGATCTCAAATTTG+GGG | - | tig0001530:59668-59687 | None:intergenic | 40.0% | |
| GGATCCTCGATCTCAAATTT+GGG | - | tig0001530:59669-59688 | None:intergenic | 40.0% | |
| GGAGCATGTTGATCTTGAAT+GGG | - | tig0001530:59690-59709 | None:intergenic | 40.0% | |
| ! | AGGAGCATGTTGATCTTGAA+TGG | - | tig0001530:59691-59710 | None:intergenic | 40.0% |
| TCCTGAGACTTAAACCCAAA+GGG | - | tig0001530:60067-60086 | None:intergenic | 40.0% | |
| TTCCTGAGACTTAAACCCAA+AGG | - | tig0001530:60068-60087 | None:intergenic | 40.0% | |
| TGCTTCAGTTGAAAAGCTGA+AGG | + | tig0001530:60196-60215 | Msa1337960:CDS | 40.0% | |
| ! | CTGCATGTGGTTTTTCGTTT+TGG | + | tig0001530:60277-60296 | Msa1337960:intron | 40.0% |
| ! | TTGCCAAACAGAAGCTTGTT+TGG | + | tig0001530:60397-60416 | Msa1337960:CDS | 40.0% |
| ! | TGCCAAACAGAAGCTTGTTT+GGG | + | tig0001530:60398-60417 | Msa1337960:CDS | 40.0% |
| TTCCCAAACAAGCTTCTGTT+TGG | - | tig0001530:60403-60422 | None:intergenic | 40.0% | |
| CTTGTTTGGGAAGTTCTTGA+GGG | + | tig0001530:60411-60430 | Msa1337960:CDS | 40.0% | |
| AAAGCCAATTGTCCTGATGA+TGG | + | tig0001530:60483-60502 | Msa1337960:CDS | 40.0% | |
| ! | CAGACAGCCTCTTTTCTTTA+GGG | + | tig0001530:60620-60639 | Msa1337960:CDS | 40.0% |
| AATGTGTGCTTTCTAGGTTG+AGG | - | tig0001530:60654-60673 | None:intergenic | 40.0% | |
| ! | AACCTAGAAAGCACACATTG+TGG | + | tig0001530:60655-60674 | Msa1337960:CDS | 40.0% |
| TACAGCTGTCCTTTGATATG+TGG | + | tig0001530:60734-60753 | Msa1337960:intron | 40.0% | |
| ! | ACTTGTTGAAATCGTTGAGG+AGG | + | tig0001530:60928-60947 | Msa1337960:intron | 40.0% |
| GGTAATATGTACAGGTCCAT+GGG | - | tig0001530:61091-61110 | None:intergenic | 40.0% | |
| AGGTAATATGTACAGGTCCA+TGG | - | tig0001530:61092-61111 | None:intergenic | 40.0% | |
| ! | CAGTTTGGTAGTTTCACAGA+AGG | + | tig0001530:61170-61189 | Msa1337960:intron | 40.0% |
| GGAAGGAATTGAAAGAGAGT+TGG | + | tig0001530:61204-61223 | Msa1337960:intron | 40.0% | |
| TTCTCTGGATGTTGAGAACT+TGG | + | tig0001530:61341-61360 | Msa1337960:intron | 40.0% | |
| ATGCAGGAAGAGATTACACA+AGG | - | tig0001530:61455-61474 | None:intergenic | 40.0% | |
| TGCATATTACCTGCTATAGC+AGG | - | tig0001530:61751-61770 | None:intergenic | 40.0% | |
| GCTATAGCAGGTAATATGCA+TGG | + | tig0001530:61751-61770 | Msa1337960:intron | 40.0% | |
| AAATAAGGGAGCCCCTAATA+TGG | - | tig0001530:61806-61825 | None:intergenic | 40.0% | |
| ! | TAGGGGCTCCCTTATTTATT+TGG | + | tig0001530:61809-61828 | Msa1337960:intron | 40.0% |
| ATGTCCTGTTCCATCTTGTT+TGG | + | tig0001530:62639-62658 | Msa1337960:intron | 40.0% | |
| ! | TGTCCTGTTCCATCTTGTTT+GGG | + | tig0001530:62640-62659 | Msa1337960:intron | 40.0% |
| ! | TTGTGATTTGCATCAAGGCA+AGG | + | tig0001530:62861-62880 | Msa1337960:CDS | 40.0% |
| ! | TGTGATTTGCATCAAGGCAA+GGG | + | tig0001530:62862-62881 | Msa1337960:CDS | 40.0% |
| ATATTACCTGAACTGGAGGA+AGG | - | tig0001530:63012-63031 | None:intergenic | 40.0% | |
| TGATCCCATTGAATCAGCTT+CGG | - | tig0001530:63664-63683 | None:intergenic | 40.0% | |
| ATTCAATGGGATCAAGACAC+TGG | + | tig0001530:63670-63689 | Msa1337960:CDS | 40.0% | |
| TTCAATGGGATCAAGACACT+GGG | + | tig0001530:63671-63690 | Msa1337960:CDS | 40.0% | |
| TGGGATCAAATAAAACTGCC+TGG | + | tig0001530:63690-63709 | Msa1337960:CDS | 40.0% | |
| GGGATCAAATAAAACTGCCT+GGG | + | tig0001530:63691-63710 | Msa1337960:CDS | 40.0% | |
| TGGAAATGTGATGCTCAATG+TGG | - | tig0001530:63752-63771 | None:intergenic | 40.0% | |
| TTCCAAAGAAATGGCTTCAG+GGG | + | tig0001530:63767-63786 | Msa1337960:CDS | 40.0% | |
| CTCCAATCTTTCAGCAGAAA+AGG | - | tig0001530:63799-63818 | None:intergenic | 40.0% | |
| ! | GAGTACCAAGAAATGATGGA+TGG | + | tig0001530:63816-63835 | Msa1337960:CDS | 40.0% |
| ACATCTGCTTAACGACAATC+AGG | + | tig0001530:63848-63867 | Msa1337960:CDS | 40.0% | |
| TCTACGCTGTCTCTTACAAA+TGG | + | tig0001530:63917-63936 | Msa1337960:CDS | 40.0% | |
| AGATATCAAGGCTACTGAAG+AGG | + | tig0001530:64013-64032 | Msa1337960:CDS | 40.0% | |
| AGATGTTTATGGTGGCAATC+CGG | + | tig0001530:64043-64062 | Msa1337960:CDS | 40.0% | |
| ATGTCGAGGAAAGACTCATT+TGG | + | tig0001530:64074-64093 | Msa1337960:CDS | 40.0% | |
| TTTGGAAGAGATGCAATTCG+AGG | - | tig0001530:64119-64138 | None:intergenic | 40.0% | |
| ! | TCAGAAGATTAGTCCCGATT+TGG | + | tig0001530:64155-64174 | Msa1337960:exon | 40.0% |
| ! | CAGAAGATTAGTCCCGATTT+GGG | + | tig0001530:64156-64175 | Msa1337960:exon | 40.0% |
| GCCCGTGTAAAAACATTTCT+AGG | + | tig0001530:64280-64299 | Msa1337960:three_prime_UTR | 40.0% | |
| GAAAAGGACGTGAAGGAGAA+GGG | - | tig0001530:59515-59534 | None:intergenic | 45.0% | |
| ! | CTTCACGTCCTTTTCCGTTA+GGG | + | tig0001530:59520-59539 | Msa1337960:five_prime_UTR | 45.0% |
| GTCAACGGAGAAGAAATCGA+AGG | - | tig0001530:59563-59582 | None:intergenic | 45.0% | |
| CTAAGAATCCCCGTTCTCAA+TGG | + | tig0001530:59613-59632 | Msa1337960:CDS | 45.0% | |
| AGACGATTCCCATTGAGAAC+GGG | - | tig0001530:59625-59644 | None:intergenic | 45.0% | |
| CTCAAATTTGGGGGAAATGG+AGG | - | tig0001530:59658-59677 | None:intergenic | 45.0% | |
| ! | TTCCCCCAAATTTGAGATCG+AGG | + | tig0001530:59662-59681 | Msa1337960:CDS | 45.0% |
| GGGATCCTCGATCTCAAATT+TGG | - | tig0001530:59670-59689 | None:intergenic | 45.0% | |
| ! | ACTTTGTGACGCTTGTTGAG+AGG | - | tig0001530:59711-59730 | None:intergenic | 45.0% |
| ACTTAATGAGCCTAGCCCTT+TGG | + | tig0001530:60049-60068 | Msa1337960:CDS | 45.0% | |
| CTTAATGAGCCTAGCCCTTT+GGG | + | tig0001530:60050-60069 | Msa1337960:CDS | 45.0% | |
| AGACTTAAACCCAAAGGGCT+AGG | - | tig0001530:60062-60081 | None:intergenic | 45.0% | |
| TACATTCGAGACTCTGCATG+TGG | + | tig0001530:60264-60283 | Msa1337960:intron | 45.0% | |
| GCTTGTTTGGGAAGTTCTTG+AGG | + | tig0001530:60410-60429 | Msa1337960:CDS | 45.0% | |
| AGGTCCATCATCAGGACAAT+TGG | - | tig0001530:60490-60509 | None:intergenic | 45.0% | |
| AATGTGCTAGGTCCATCATC+AGG | - | tig0001530:60498-60517 | None:intergenic | 45.0% | |
| ACCTAGCACATTGACCTTAG+TGG | + | tig0001530:60506-60525 | Msa1337960:CDS | 45.0% | |
| ACCACTAAGGTCAATGTGCT+AGG | - | tig0001530:60510-60529 | None:intergenic | 45.0% | |
| CCTAAAGAAAAGAGGCTGTC+TGG | - | tig0001530:60622-60641 | None:intergenic | 45.0% | |
| ! | CCAGACAGCCTCTTTTCTTT+AGG | + | tig0001530:60619-60638 | Msa1337960:CDS | 45.0% |
| TGCCACAATGTGTGCTTTCT+AGG | - | tig0001530:60660-60679 | None:intergenic | 45.0% | |
| ! | TCAACGACAGATTTTACCGG+TGG | + | tig0001530:60681-60700 | Msa1337960:CDS | 45.0% |
| TTGAAATCGTTGAGGAGGAG+TGG | + | tig0001530:60933-60952 | Msa1337960:intron | 45.0% | |
| AATATGTACAGGTCCATGGG+TGG | - | tig0001530:61088-61107 | None:intergenic | 45.0% | |
| AGGTTAGAGCAAGGAATGAG+AGG | + | tig0001530:61145-61164 | Msa1337960:intron | 45.0% | |
| GGTTAGAGCAAGGAATGAGA+GGG | + | tig0001530:61146-61165 | Msa1337960:intron | 45.0% | |
| AAGGAATGAGAGGGACAGTT+TGG | + | tig0001530:61155-61174 | Msa1337960:intron | 45.0% | |
| ! | GGTAGTTTCACAGAAGGCAT+TGG | + | tig0001530:61176-61195 | Msa1337960:intron | 45.0% |
| !! | GTTTCACAGAAGGCATTGGA+AGG | + | tig0001530:61180-61199 | Msa1337960:intron | 45.0% |
| AGGAAGAGATTACACAAGGC+AGG | - | tig0001530:61451-61470 | None:intergenic | 45.0% | |
| ATGTCATGCTAGCTAGTGCT+TGG | + | tig0001530:61654-61673 | Msa1337960:intron | 45.0% | |
| TTGGAGAAGAGTGAAGTGGT+TGG | + | tig0001530:61673-61692 | Msa1337960:intron | 45.0% | |
| TGGAGAAGAGTGAAGTGGTT+GGG | + | tig0001530:61674-61693 | Msa1337960:intron | 45.0% | |
| TTAGGGTAACCTGCTATAGC+AGG | + | tig0001530:61739-61758 | Msa1337960:intron | 45.0% | |
| GGTAATATGCATGGGTCCAT+TGG | + | tig0001530:61760-61779 | Msa1337960:intron | 45.0% | |
| AATATGCATGGGTCCATTGG+TGG | + | tig0001530:61763-61782 | Msa1337960:intron | 45.0% | |
| GTTCCCAAACAAGATGGAAC+AGG | - | tig0001530:62646-62665 | None:intergenic | 45.0% | |
| GATGGAGTTCCCAAACAAGA+TGG | - | tig0001530:62652-62671 | None:intergenic | 45.0% | |
| ACTTAAGTCGGTCGTTACAC+TGG | - | tig0001530:62753-62772 | None:intergenic | 45.0% | |
| AAGCCAACAGCCAGAGATAA+TGG | + | tig0001530:62777-62796 | Msa1337960:CDS | 45.0% | |
| CAACCATTATCTCTGGCTGT+TGG | - | tig0001530:62783-62802 | None:intergenic | 45.0% | |
| ! | TGCCTCTCGTTTTCAGAACA+TGG | + | tig0001530:62897-62916 | Msa1337960:CDS | 45.0% |
| ! | GCCTCTCGTTTTCAGAACAT+GGG | + | tig0001530:62898-62917 | Msa1337960:CDS | 45.0% |
| !! | TCCCATGTTCTGAAAACGAG+AGG | - | tig0001530:62902-62921 | None:intergenic | 45.0% |
| ! | GGTCGTAAATGATGGAGACA+GGG | - | tig0001530:62938-62957 | None:intergenic | 45.0% |
| TTGTCTGTGCAGCATCTACA+TGG | + | tig0001530:63521-63540 | Msa1337960:intron | 45.0% | |
| TACATCGCTTCTGTTGCATG+TGG | - | tig0001530:63636-63655 | None:intergenic | 45.0% | |
| CGCTCATTGACATAGAAGGA+CGG | - | tig0001530:63719-63738 | None:intergenic | 45.0% | |
| ATCCCCTGAAGCCATTTCTT+TGG | - | tig0001530:63772-63791 | None:intergenic | 45.0% | |
| GCCCAATTCACATGACAACA+CGG | + | tig0001530:63953-63972 | Msa1337960:CDS | 45.0% | |
| CCCGTGTTGTCATGTGAATT+GGG | - | tig0001530:63957-63976 | None:intergenic | 45.0% | |
| CCCAATTCACATGACAACAC+GGG | + | tig0001530:63954-63973 | Msa1337960:CDS | 45.0% | |
| GAGGACTCGAGAGATGTTTA+TGG | + | tig0001530:64032-64051 | Msa1337960:CDS | 45.0% | |
| GACTCGAGAGATGTTTATGG+TGG | + | tig0001530:64035-64054 | Msa1337960:CDS | 45.0% | |
| !! | TCATAGGAGGCACTAGCATT+TGG | + | tig0001530:64228-64247 | Msa1337960:three_prime_UTR | 45.0% |
| !!! | TTTTTATTTATAGTTTAATA+GGG | + | tig0001530:62439-62458 | Msa1337960:intron | 5.0% |
| !!! | TTTTTTAACTTTTTTTTTAT+TGG | + | tig0001530:64400-64419 | Msa1337960:three_prime_UTR | 5.0% |
| GGAAAAGGACGTGAAGGAGA+AGG | - | tig0001530:59516-59535 | None:intergenic | 50.0% | |
| CCTAACGGAAAAGGACGTGA+AGG | - | tig0001530:59522-59541 | None:intergenic | 50.0% | |
| ! | CCTTCACGTCCTTTTCCGTT+AGG | + | tig0001530:59519-59538 | Msa1337960:five_prime_UTR | 50.0% |
| GACGATTCCCATTGAGAACG+GGG | - | tig0001530:59624-59643 | None:intergenic | 50.0% | |
| ! | GCCCTTTGGGTTTAAGTCTC+AGG | + | tig0001530:60063-60082 | Msa1337960:CDS | 50.0% |
| ! | GACAGATTTTACCGGTGGAC+AGG | + | tig0001530:60686-60705 | Msa1337960:CDS | 50.0% |
| !! | TCACAGAAGGCATTGGAAGG+TGG | + | tig0001530:61183-61202 | Msa1337960:intron | 50.0% |
| !! | AGAAGGCATTGGAAGGTGGA+AGG | + | tig0001530:61187-61206 | Msa1337960:intron | 50.0% |
| GTGCTTGGAGAAGAGTGAAG+TGG | + | tig0001530:61669-61688 | Msa1337960:intron | 50.0% | |
| GATACATTCTTCCCTGCTGC+TGG | + | tig0001530:62531-62550 | Msa1337960:intron | 50.0% | |
| TTCTCAATAGCAGCGGATCG+TGG | - | tig0001530:62823-62842 | None:intergenic | 50.0% | |
| GTGAGGGTTCTCAATAGCAG+CGG | - | tig0001530:62830-62849 | None:intergenic | 50.0% | |
| TTGCATCAAGGCAAGGGCAA+TGG | + | tig0001530:62868-62887 | Msa1337960:CDS | 50.0% | |
| GATGGAGACAGGGATGAATG+AGG | - | tig0001530:62928-62947 | None:intergenic | 50.0% | |
| ! | CGGTCGTAAATGATGGAGAC+AGG | - | tig0001530:62939-62958 | None:intergenic | 50.0% |
| CTGTGCTCGGTCGTAAATGA+TGG | - | tig0001530:62946-62965 | None:intergenic | 50.0% | |
| AGCAGAAGGATCACTGTGCT+CGG | - | tig0001530:62959-62978 | None:intergenic | 50.0% | |
| TTCGCAGGGCACACTATCTA+AGG | - | tig0001530:62986-63005 | None:intergenic | 50.0% | |
| ! | ATGTGAATTGGGCACTGCTG+GGG | - | tig0001530:63946-63965 | None:intergenic | 50.0% |
| ! | CATGTGAATTGGGCACTGCT+GGG | - | tig0001530:63947-63966 | None:intergenic | 50.0% |
| ! | TCATGTGAATTGGGCACTGC+TGG | - | tig0001530:63948-63967 | None:intergenic | 50.0% |
| GCCCGTGTTGTCATGTGAAT+TGG | - | tig0001530:63958-63977 | None:intergenic | 50.0% | |
| GACAACACGGGCTCTATTGA+AGG | + | tig0001530:63966-63985 | Msa1337960:CDS | 50.0% | |
| ATCGTTGAGGAGGAGTGGTC+AGG | + | tig0001530:60938-60957 | Msa1337960:intron | 55.0% | |
| ! | GAAGCACCTTCCTCCAGTTC+AGG | + | tig0001530:63003-63022 | Msa1337960:CDS | 55.0% |
| ! | TGTGAATTGGGCACTGCTGG+GGG | - | tig0001530:63945-63964 | None:intergenic | 55.0% |
| GAGTCTTTCCTCGACATGCC+TGG | - | tig0001530:64071-64090 | None:intergenic | 55.0% | |
| ! | ATGTGTGCTGGCCTGTCCAC+CGG | - | tig0001530:60700-60719 | None:intergenic | 60.0% |
| GTGGACAGGCCAGCACACAT+AGG | + | tig0001530:60700-60719 | Msa1337960:CDS | 60.0% | |
| !! | CTGGAGGAAGGTGCTTCGCA+GGG | - | tig0001530:63000-63019 | None:intergenic | 60.0% |
| !! | ACTGGAGGAAGGTGCTTCGC+AGG | - | tig0001530:63001-63020 | None:intergenic | 60.0% |
| GACATAGAAGGACGGAGCCC+AGG | - | tig0001530:63711-63730 | None:intergenic | 60.0% | |
| TATGGTGGCAATCCGGCACC+AGG | + | tig0001530:64050-64069 | Msa1337960:CDS | 60.0% | |
| TTCCTCGACATGCCTGGTGC+CGG | - | tig0001530:64065-64084 | None:intergenic | 60.0% | |
| ATCCGGCACCAGGCATGTCG+AGG | + | tig0001530:64060-64079 | Msa1337960:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001530 | gene | 59499 | 64508 | 59499 | ID=Msa1337960;Name=Msa1337960 |
| tig0001530 | mRNA | 59499 | 64508 | 59499 | ID=Msa1337960-mRNA-1;Parent=Msa1337960;Name=Msa1337960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=95|1|1|1|1|1|6|342|498 |
| tig0001530 | exon | 59499 | 59728 | 59499 | ID=Msa1337960-mRNA-1:exon:1410;Parent=Msa1337960-mRNA-1 |
| tig0001530 | exon | 60035 | 60262 | 60035 | ID=Msa1337960-mRNA-1:exon:1411;Parent=Msa1337960-mRNA-1 |
| tig0001530 | exon | 60354 | 60527 | 60354 | ID=Msa1337960-mRNA-1:exon:1412;Parent=Msa1337960-mRNA-1 |
| tig0001530 | exon | 60615 | 60721 | 60615 | ID=Msa1337960-mRNA-1:exon:1413;Parent=Msa1337960-mRNA-1 |
| tig0001530 | exon | 62693 | 63024 | 62693 | ID=Msa1337960-mRNA-1:exon:1414;Parent=Msa1337960-mRNA-1 |
| tig0001530 | exon | 63646 | 64508 | 63646 | ID=Msa1337960-mRNA-1:exon:1415;Parent=Msa1337960-mRNA-1 |
| tig0001530 | five_prime_UTR | 59499 | 59593 | 59499 | ID=Msa1337960-mRNA-1:five_prime_utr;Parent=Msa1337960-mRNA-1 |
| tig0001530 | CDS | 59594 | 59728 | 59594 | ID=Msa1337960-mRNA-1:cds;Parent=Msa1337960-mRNA-1 |
| tig0001530 | CDS | 60035 | 60262 | 60035 | ID=Msa1337960-mRNA-1:cds;Parent=Msa1337960-mRNA-1 |
| tig0001530 | CDS | 60354 | 60527 | 60354 | ID=Msa1337960-mRNA-1:cds;Parent=Msa1337960-mRNA-1 |
| tig0001530 | CDS | 60615 | 60721 | 60615 | ID=Msa1337960-mRNA-1:cds;Parent=Msa1337960-mRNA-1 |
| tig0001530 | CDS | 62693 | 63024 | 62693 | ID=Msa1337960-mRNA-1:cds;Parent=Msa1337960-mRNA-1 |
| tig0001530 | CDS | 63646 | 64166 | 63646 | ID=Msa1337960-mRNA-1:cds;Parent=Msa1337960-mRNA-1 |
| tig0001530 | three_prime_UTR | 64167 | 64508 | 64167 | ID=Msa1337960-mRNA-1:three_prime_utr;Parent=Msa1337960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
