AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0110500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110500 MtrunA17_Chr1g0168471 96.850 127 4 0 1 127 1 127 3.12e-89 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110500 AT2G05620.2 75.940 133 23 4 2 127 3 133 9.08e-66 196
Msa0110500 AT2G05620.1 75.940 133 23 4 2 127 3 133 9.08e-66 196

Find 52 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAACGTTATAAAATTTA+AGG 0.148269 1_3:-23359931 Msa0110500:three_prime_UTR
TCATCAATGGTTCACATAAA+AGG 0.199695 1_3:+23359840 None:intergenic
AGAGATTGAAGTGGCCATTT+TGG 0.254711 1_3:+23361613 None:intergenic
ATCAAGGAAATATGTTAAAC+TGG 0.280664 1_3:+23359805 None:intergenic
ATATTTCCTTGATTCCTCTT+TGG 0.290466 1_3:-23359795 Msa0110500:three_prime_UTR
TTTGTGAATGTAAAAGAATA+AGG 0.314488 1_3:+23361669 None:intergenic
AAACGTTTCAATCAGCTTAG+AGG 0.319386 1_3:-23361377 Msa0110500:CDS
TCATTAACATTCTTCATCAT+AGG 0.355579 1_3:+23361455 None:intergenic
AAACATCATAGTAACCAAAA+TGG 0.374163 1_3:-23361627 Msa0110500:exon
ACCAGTGGTTTAGATGTATT+AGG 0.380542 1_3:+23361796 None:intergenic
ACTGAATTCTGCAAATCAAT+AGG 0.397917 1_3:-23360201 Msa0110500:CDS
AACAGAGACAAGGGCTGATT+AGG 0.411490 1_3:-23360167 Msa0110500:CDS
TGTGTTGGTTCATCATTCTA+TGG 0.416628 1_3:-23361581 Msa0110500:CDS
GCCACTTCAATCTCTGCAAC+AGG 0.418962 1_3:-23361605 Msa0110500:CDS
ATCTCTGCAACAGGTTGTGT+TGG 0.422671 1_3:-23361596 Msa0110500:CDS
GCTTCAATGCATGGTTGTAA+TGG 0.427377 1_3:+23361722 None:intergenic
TTACGAGTAACCACAACAAT+TGG 0.430918 1_3:+23361413 None:intergenic
AGCCATTGCTTTACACTCTC+AGG 0.432190 1_3:-23361351 Msa0110500:intron
GTTCATCATTCTATGGAAGC+TGG 0.445752 1_3:-23361574 Msa0110500:CDS
GTTTCTTCGCAAGTTCGTAT+TGG 0.470806 1_3:-23361506 Msa0110500:CDS
GTGGTTACTCGTAATATTGT+TGG 0.474864 1_3:-23361404 Msa0110500:CDS
TAATATTTGTATGTGAAGGA+AGG 0.478965 1_3:+23361749 None:intergenic
ATCATAGGTTGCAACCTCAC+TGG 0.491055 1_3:+23361470 None:intergenic
TTCATCATTCTATGGAAGCT+GGG 0.491238 1_3:-23361573 Msa0110500:CDS
ATTAGGTTGGCTAAGAAGAA+TGG 0.501313 1_3:-23360150 Msa0110500:CDS
ATGATGAAGAATGTTAATGA+AGG 0.502442 1_3:-23361452 Msa0110500:CDS
AACACACCAAAGAGGAATCA+AGG 0.503447 1_3:+23359789 None:intergenic
AAAAGATTAGCTTCAATGCA+TGG 0.504944 1_3:+23361713 None:intergenic
ATGGTTCACATAAAAGGCTA+TGG 0.508728 1_3:+23359846 None:intergenic
GACATTGTAATTACAAAATG+TGG 0.509248 1_3:+23360085 None:intergenic
TCCTAATACATCTAAACCAC+TGG 0.519171 1_3:-23361797 Msa0110500:five_prime_UTR
AGCTGGGGAACATCTATAGT+TGG 0.521344 1_3:-23361557 Msa0110500:CDS
AATATTTGTATGTGAAGGAA+GGG 0.541782 1_3:+23361750 None:intergenic
AAGAAGAATGGAGAATGGCT+TGG 0.545873 1_3:-23360138 Msa0110500:CDS
AGAAATACATCAATGTTACT+TGG 0.548139 1_3:-23359895 Msa0110500:three_prime_UTR
TTGACAGCAGAATGTAAACT+AGG 0.551181 1_3:-23360026 Msa0110500:three_prime_UTR
TTTATAATATTTGTATGTGA+AGG 0.558690 1_3:+23361745 None:intergenic
AAGAATGTTAATGAAGGGAA+AGG 0.566696 1_3:-23361446 Msa0110500:CDS
GGTGTAAATTGGAGAACCAG+TGG 0.587293 1_3:+23361781 None:intergenic
GAGACAAGGGCTGATTAGGT+TGG 0.587941 1_3:-23360163 Msa0110500:CDS
TGGTGAAGATTACAGCATGT+TGG 0.600796 1_3:-23361537 Msa0110500:CDS
TGGCTAAGAAGAATGGAGAA+TGG 0.601122 1_3:-23360143 Msa0110500:CDS
TGATGAAGAATGTTAATGAA+GGG 0.601637 1_3:-23361451 Msa0110500:CDS
CACCTGAGAGTGTAAAGCAA+TGG 0.607087 1_3:+23361349 None:intergenic
ACCTGTTGCAGAGATTGAAG+TGG 0.616422 1_3:+23361604 None:intergenic
TCATCATTCTATGGAAGCTG+GGG 0.629743 1_3:-23361572 Msa0110500:CDS
TCAAGGAAATATGTTAAACT+GGG 0.633217 1_3:+23359806 None:intergenic
GCAGATGCAAAACAGAGACA+AGG 0.641927 1_3:-23360177 Msa0110500:CDS
CAGATGCAAAACAGAGACAA+GGG 0.659781 1_3:-23360176 Msa0110500:CDS
GAAGAGTTAGTAAGCCAGTG+AGG 0.661265 1_3:-23361484 Msa0110500:CDS
CGGGAGGTAACACACCAAAG+AGG 0.693548 1_3:+23359781 None:intergenic
GAACTCCGGATTATCACGGG+AGG 0.757287 1_3:+23359765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTTATTTAAAAAATTTG+TGG - chr1_3:23360499-23360518 Msa0110500:intron 10.0%
!! TACTTATTTAAAAAATTTGT+GGG - chr1_3:23360500-23360519 Msa0110500:intron 10.0%
!! TTACTTATTTAAAAAATTTG+TGG - chr1_3:23360499-23360518 Msa0110500:intron 10.0%
!! TACTTATTTAAAAAATTTGT+GGG - chr1_3:23360500-23360519 Msa0110500:intron 10.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_3:23359840-23359859 None:intergenic 15.0%
!! ATGAAACGTTATAAAATTTA+AGG - chr1_3:23361651-23361670 Msa0110500:five_prime_UTR 15.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_3:23359840-23359859 None:intergenic 15.0%
!! ATGAAACGTTATAAAATTTA+AGG - chr1_3:23361651-23361670 Msa0110500:five_prime_UTR 15.0%
!! TTTGTGAATGTAAAAGAATA+AGG + chr1_3:23359916-23359935 None:intergenic 20.0%
!!! TTATATGATTCTCTAGAATT+AGG - chr1_3:23360364-23360383 Msa0110500:intron 20.0%
!! TTCAAGTACAATATATCAAA+AGG - chr1_3:23360457-23360476 Msa0110500:intron 20.0%
!! TCAAGTACAATATATCAAAA+GGG - chr1_3:23360458-23360477 Msa0110500:intron 20.0%
!! TTGTTAATTAAAGTGATACT+AGG - chr1_3:23360536-23360555 Msa0110500:intron 20.0%
!!! AAACTAAATTTTTTCTCTCA+AGG - chr1_3:23360560-23360579 Msa0110500:intron 20.0%
!! ATTCAAAAAAACACATTTCT+AGG - chr1_3:23360642-23360661 Msa0110500:intron 20.0%
!! TTCAAAAAAACACATTTCTA+GGG - chr1_3:23360643-23360662 Msa0110500:intron 20.0%
!! TAAAACTAAAGAATTTGAGA+TGG - chr1_3:23360684-23360703 Msa0110500:intron 20.0%
!!! TAGTTTATAGTTGATATTTG+CGG - chr1_3:23360743-23360762 Msa0110500:intron 20.0%
!! ATTTGTGTGAATAAAATTGA+TGG - chr1_3:23361299-23361318 Msa0110500:intron 20.0%
!!! TTTCATATTTTGAAATCTGT+AGG - chr1_3:23361353-23361372 Msa0110500:CDS 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_3:23361526-23361545 Msa0110500:CDS 20.0%
!! TTTGTGAATGTAAAAGAATA+AGG + chr1_3:23359916-23359935 None:intergenic 20.0%
!!! TTATATGATTCTCTAGAATT+AGG - chr1_3:23360364-23360383 Msa0110500:intron 20.0%
!! TTCAAGTACAATATATCAAA+AGG - chr1_3:23360457-23360476 Msa0110500:intron 20.0%
!! TCAAGTACAATATATCAAAA+GGG - chr1_3:23360458-23360477 Msa0110500:intron 20.0%
!! TTGTTAATTAAAGTGATACT+AGG - chr1_3:23360536-23360555 Msa0110500:intron 20.0%
!!! AAACTAAATTTTTTCTCTCA+AGG - chr1_3:23360560-23360579 Msa0110500:intron 20.0%
!! ATTCAAAAAAACACATTTCT+AGG - chr1_3:23360642-23360661 Msa0110500:intron 20.0%
!! TTCAAAAAAACACATTTCTA+GGG - chr1_3:23360643-23360662 Msa0110500:intron 20.0%
!! TAAAACTAAAGAATTTGAGA+TGG - chr1_3:23360684-23360703 Msa0110500:intron 20.0%
!!! TAGTTTATAGTTGATATTTG+CGG - chr1_3:23360743-23360762 Msa0110500:intron 20.0%
!! ATTTGTGTGAATAAAATTGA+TGG - chr1_3:23361299-23361318 Msa0110500:intron 20.0%
!!! TTTCATATTTTGAAATCTGT+AGG - chr1_3:23361353-23361372 Msa0110500:CDS 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_3:23361526-23361545 Msa0110500:CDS 20.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_3:23359835-23359854 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_3:23359836-23359855 None:intergenic 25.0%
! AAACATCATAGTAACCAAAA+TGG - chr1_3:23359955-23359974 Msa0110500:three_prime_UTR 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_3:23360130-23360149 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_3:23360130-23360149 Msa0110500:CDS 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_3:23360131-23360150 Msa0110500:CDS 25.0%
!!! GCATAGCTTTTTTTTTTTTG+AGG - chr1_3:23360302-23360321 Msa0110500:intron 25.0%
! GAAATTTATTGTCACAACTT+AGG - chr1_3:23360330-23360349 Msa0110500:intron 25.0%
!! TCTAGAATTAGGATTATATG+TGG - chr1_3:23360375-23360394 Msa0110500:intron 25.0%
! ATGTGGTTTATATGTTTCAA+TGG - chr1_3:23360392-23360411 Msa0110500:intron 25.0%
! TGATGAAATATGTTGAAAAG+AGG - chr1_3:23360434-23360453 Msa0110500:intron 25.0%
!!! TTTTTTCTCTCAAGGTTATA+AGG - chr1_3:23360568-23360587 Msa0110500:intron 25.0%
!! TCAAAAAAACACATTTCTAG+GGG - chr1_3:23360644-23360663 Msa0110500:intron 25.0%
!!! ATAATTAGTGCTTTCTAGTT+GGG + chr1_3:23361091-23361110 None:intergenic 25.0%
! TCTAACATATGATAAGAGAT+TGG - chr1_3:23361110-23361129 Msa0110500:intron 25.0%
! CTAACATATGATAAGAGATT+GGG - chr1_3:23361111-23361130 Msa0110500:intron 25.0%
! TAACATATGATAAGAGATTG+GGG - chr1_3:23361112-23361131 Msa0110500:intron 25.0%
! GAATAAAATTGATGGAAGAA+TGG - chr1_3:23361307-23361326 Msa0110500:intron 25.0%
! GACATTGTAATTACAAAATG+TGG + chr1_3:23361500-23361519 None:intergenic 25.0%
! AGAAATACATCAATGTTACT+TGG - chr1_3:23361687-23361706 Msa0110500:five_prime_UTR 25.0%
! TCAAGGAAATATGTTAAACT+GGG + chr1_3:23361779-23361798 None:intergenic 25.0%
! ATCAAGGAAATATGTTAAAC+TGG + chr1_3:23361780-23361799 None:intergenic 25.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_3:23359835-23359854 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_3:23359836-23359855 None:intergenic 25.0%
! AAACATCATAGTAACCAAAA+TGG - chr1_3:23359955-23359974 Msa0110500:three_prime_UTR 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_3:23360130-23360149 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_3:23360130-23360149 Msa0110500:CDS 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_3:23360131-23360150 Msa0110500:CDS 25.0%
!!! GCATAGCTTTTTTTTTTTTG+AGG - chr1_3:23360302-23360321 Msa0110500:intron 25.0%
! GAAATTTATTGTCACAACTT+AGG - chr1_3:23360330-23360349 Msa0110500:intron 25.0%
!! TCTAGAATTAGGATTATATG+TGG - chr1_3:23360375-23360394 Msa0110500:intron 25.0%
! ATGTGGTTTATATGTTTCAA+TGG - chr1_3:23360392-23360411 Msa0110500:intron 25.0%
! TGATGAAATATGTTGAAAAG+AGG - chr1_3:23360434-23360453 Msa0110500:intron 25.0%
!!! TTTTTTCTCTCAAGGTTATA+AGG - chr1_3:23360568-23360587 Msa0110500:intron 25.0%
!! TCAAAAAAACACATTTCTAG+GGG - chr1_3:23360644-23360663 Msa0110500:intron 25.0%
!!! ATAATTAGTGCTTTCTAGTT+GGG + chr1_3:23361091-23361110 None:intergenic 25.0%
! TCTAACATATGATAAGAGAT+TGG - chr1_3:23361110-23361129 Msa0110500:intron 25.0%
! CTAACATATGATAAGAGATT+GGG - chr1_3:23361111-23361130 Msa0110500:intron 25.0%
! TAACATATGATAAGAGATTG+GGG - chr1_3:23361112-23361131 Msa0110500:intron 25.0%
! GAATAAAATTGATGGAAGAA+TGG - chr1_3:23361307-23361326 Msa0110500:intron 25.0%
! GACATTGTAATTACAAAATG+TGG + chr1_3:23361500-23361519 None:intergenic 25.0%
! AGAAATACATCAATGTTACT+TGG - chr1_3:23361687-23361706 Msa0110500:five_prime_UTR 25.0%
! TCAAGGAAATATGTTAAACT+GGG + chr1_3:23361779-23361798 None:intergenic 25.0%
! ATCAAGGAAATATGTTAAAC+TGG + chr1_3:23361780-23361799 None:intergenic 25.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_3:23359815-23359834 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_3:23359872-23359891 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_3:23360136-23360155 Msa0110500:CDS 30.0%
!! TATTTTTGCTCCAATTGTTG+TGG - chr1_3:23360159-23360178 Msa0110500:CDS 30.0%
!! TCAATGGTTTGTTAGATTGA+AGG - chr1_3:23360408-23360427 Msa0110500:intron 30.0%
!!! TTTGAGATGGTTTTGAATCA+AGG - chr1_3:23360697-23360716 Msa0110500:intron 30.0%
TTGATATTTGCGGAGAATTA+TGG - chr1_3:23360753-23360772 Msa0110500:intron 30.0%
TGTGGTTGTTTAAAGATTGA+TGG - chr1_3:23360843-23360862 Msa0110500:intron 30.0%
GTTTAAAGATTGATGGAAGA+TGG - chr1_3:23360850-23360869 Msa0110500:intron 30.0%
!! TAATTAGTGCTTTCTAGTTG+GGG + chr1_3:23361090-23361109 None:intergenic 30.0%
! GATAATTAGTGCTTTCTAGT+TGG + chr1_3:23361092-23361111 None:intergenic 30.0%
GATTTGAACTTCATCTCTTA+AGG + chr1_3:23361217-23361236 None:intergenic 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_3:23361381-23361400 Msa0110500:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_3:23361745-23361764 None:intergenic 30.0%
!!! GGATCAACTTTTTTCATCAA+TGG + chr1_3:23361758-23361777 None:intergenic 30.0%
ATATTTCCTTGATTCCTCTT+TGG - chr1_3:23361787-23361806 Msa0110500:five_prime_UTR 30.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_3:23359815-23359834 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_3:23359872-23359891 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_3:23360136-23360155 Msa0110500:CDS 30.0%
!! TATTTTTGCTCCAATTGTTG+TGG - chr1_3:23360159-23360178 Msa0110500:CDS 30.0%
!! TCAATGGTTTGTTAGATTGA+AGG - chr1_3:23360408-23360427 Msa0110500:intron 30.0%
!!! TTTGAGATGGTTTTGAATCA+AGG - chr1_3:23360697-23360716 Msa0110500:intron 30.0%
TTGATATTTGCGGAGAATTA+TGG - chr1_3:23360753-23360772 Msa0110500:intron 30.0%
TGTGGTTGTTTAAAGATTGA+TGG - chr1_3:23360843-23360862 Msa0110500:intron 30.0%
GTTTAAAGATTGATGGAAGA+TGG - chr1_3:23360850-23360869 Msa0110500:intron 30.0%
!! TAATTAGTGCTTTCTAGTTG+GGG + chr1_3:23361090-23361109 None:intergenic 30.0%
! GATAATTAGTGCTTTCTAGT+TGG + chr1_3:23361092-23361111 None:intergenic 30.0%
GATTTGAACTTCATCTCTTA+AGG + chr1_3:23361217-23361236 None:intergenic 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_3:23361381-23361400 Msa0110500:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_3:23361745-23361764 None:intergenic 30.0%
!!! GGATCAACTTTTTTCATCAA+TGG + chr1_3:23361758-23361777 None:intergenic 30.0%
ATATTTCCTTGATTCCTCTT+TGG - chr1_3:23361787-23361806 Msa0110500:five_prime_UTR 30.0%
TCCTAATACATCTAAACCAC+TGG - chr1_3:23359785-23359804 Msa0110500:three_prime_UTR 35.0%
ACCAGTGGTTTAGATGTATT+AGG + chr1_3:23359789-23359808 None:intergenic 35.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_3:23359825-23359844 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_3:23360001-23360020 Msa0110500:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_3:23360009-23360028 Msa0110500:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_3:23360172-23360191 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_3:23360178-23360197 Msa0110500:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_3:23360205-23360224 Msa0110500:CDS 35.0%
TCTATGAGATGTCATCTCAA+TGG + chr1_3:23360605-23360624 None:intergenic 35.0%
TTGAGATGACATCTCATAGA+TGG - chr1_3:23360605-23360624 Msa0110500:intron 35.0%
AGTTGGGGAAATACTTGATT+GGG + chr1_3:23361075-23361094 None:intergenic 35.0%
TAGTTGGGGAAATACTTGAT+TGG + chr1_3:23361076-23361095 None:intergenic 35.0%
TCGGGATGTTTCAAAATGTT+CGG - chr1_3:23361143-23361162 Msa0110500:intron 35.0%
ATGTTCGGTAATTATCCACA+AGG - chr1_3:23361158-23361177 Msa0110500:intron 35.0%
!! ATTAGGTTGGCTAAGAAGAA+TGG - chr1_3:23361432-23361451 Msa0110500:CDS 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_3:23361556-23361575 Msa0110500:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_3:23361739-23361758 None:intergenic 35.0%
TCCTAATACATCTAAACCAC+TGG - chr1_3:23359785-23359804 Msa0110500:three_prime_UTR 35.0%
ACCAGTGGTTTAGATGTATT+AGG + chr1_3:23359789-23359808 None:intergenic 35.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_3:23359825-23359844 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_3:23360001-23360020 Msa0110500:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_3:23360009-23360028 Msa0110500:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_3:23360172-23360191 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_3:23360178-23360197 Msa0110500:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_3:23360205-23360224 Msa0110500:CDS 35.0%
TCTATGAGATGTCATCTCAA+TGG + chr1_3:23360605-23360624 None:intergenic 35.0%
TTGAGATGACATCTCATAGA+TGG - chr1_3:23360605-23360624 Msa0110500:intron 35.0%
AGTTGGGGAAATACTTGATT+GGG + chr1_3:23361075-23361094 None:intergenic 35.0%
TAGTTGGGGAAATACTTGAT+TGG + chr1_3:23361076-23361095 None:intergenic 35.0%
TCGGGATGTTTCAAAATGTT+CGG - chr1_3:23361143-23361162 Msa0110500:intron 35.0%
ATGTTCGGTAATTATCCACA+AGG - chr1_3:23361158-23361177 Msa0110500:intron 35.0%
!! ATTAGGTTGGCTAAGAAGAA+TGG - chr1_3:23361432-23361451 Msa0110500:CDS 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_3:23361556-23361575 Msa0110500:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_3:23361739-23361758 None:intergenic 35.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_3:23359863-23359882 None:intergenic 40.0%
! AGAGATTGAAGTGGCCATTT+TGG + chr1_3:23359972-23359991 None:intergenic 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_3:23360008-23360027 Msa0110500:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_3:23360010-23360029 Msa0110500:three_prime_UTR 40.0%
TGGTGAAGATTACAGCATGT+TGG - chr1_3:23360045-23360064 Msa0110500:three_prime_UTR 40.0%
GTTTCTTCGCAAGTTCGTAT+TGG - chr1_3:23360076-23360095 Msa0110500:three_prime_UTR 40.0%
AGATGACATCTCATAGATGG+AGG - chr1_3:23360608-23360627 Msa0110500:intron 40.0%
!!! ATGGTTTTGAATCAAGGACG+TGG - chr1_3:23360703-23360722 Msa0110500:intron 40.0%
CAAGGACGTGGTAATATTCA+TGG - chr1_3:23360715-23360734 Msa0110500:intron 40.0%
CTGCAATTATTGTCGTGTTG+CGG - chr1_3:23360786-23360805 Msa0110500:intron 40.0%
ACCTTGATGTCTCTTGTATG+TGG - chr1_3:23360825-23360844 Msa0110500:intron 40.0%
ACCACATACAAGAGACATCA+AGG + chr1_3:23360829-23360848 None:intergenic 40.0%
GCAAGACTTTCTCTTCTAGT+TGG + chr1_3:23360913-23360932 None:intergenic 40.0%
CTAGAAGAGAAAGTCTTGCT+TGG - chr1_3:23360914-23360933 Msa0110500:intron 40.0%
!! ACTTTTTGAGCACACCACTT+AGG - chr1_3:23360942-23360961 Msa0110500:intron 40.0%
TTTGTGTGTGAATGCCTAAG+TGG + chr1_3:23360959-23360978 None:intergenic 40.0%
AGTTCAAATCACCTCAGAGA+TGG - chr1_3:23361227-23361246 Msa0110500:intron 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_3:23361406-23361425 Msa0110500:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_3:23361439-23361458 Msa0110500:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_3:23361444-23361463 Msa0110500:CDS 40.0%
AACACACCAAAGAGGAATCA+AGG + chr1_3:23361796-23361815 None:intergenic 40.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_3:23359863-23359882 None:intergenic 40.0%
! AGAGATTGAAGTGGCCATTT+TGG + chr1_3:23359972-23359991 None:intergenic 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_3:23360008-23360027 Msa0110500:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_3:23360010-23360029 Msa0110500:three_prime_UTR 40.0%
TGGTGAAGATTACAGCATGT+TGG - chr1_3:23360045-23360064 Msa0110500:three_prime_UTR 40.0%
GTTTCTTCGCAAGTTCGTAT+TGG - chr1_3:23360076-23360095 Msa0110500:three_prime_UTR 40.0%
AGATGACATCTCATAGATGG+AGG - chr1_3:23360608-23360627 Msa0110500:intron 40.0%
!!! ATGGTTTTGAATCAAGGACG+TGG - chr1_3:23360703-23360722 Msa0110500:intron 40.0%
CAAGGACGTGGTAATATTCA+TGG - chr1_3:23360715-23360734 Msa0110500:intron 40.0%
CTGCAATTATTGTCGTGTTG+CGG - chr1_3:23360786-23360805 Msa0110500:intron 40.0%
ACCTTGATGTCTCTTGTATG+TGG - chr1_3:23360825-23360844 Msa0110500:intron 40.0%
ACCACATACAAGAGACATCA+AGG + chr1_3:23360829-23360848 None:intergenic 40.0%
GCAAGACTTTCTCTTCTAGT+TGG + chr1_3:23360913-23360932 None:intergenic 40.0%
CTAGAAGAGAAAGTCTTGCT+TGG - chr1_3:23360914-23360933 Msa0110500:intron 40.0%
!! ACTTTTTGAGCACACCACTT+AGG - chr1_3:23360942-23360961 Msa0110500:intron 40.0%
TTTGTGTGTGAATGCCTAAG+TGG + chr1_3:23360959-23360978 None:intergenic 40.0%
AGTTCAAATCACCTCAGAGA+TGG - chr1_3:23361227-23361246 Msa0110500:intron 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_3:23361406-23361425 Msa0110500:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_3:23361439-23361458 Msa0110500:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_3:23361444-23361463 Msa0110500:CDS 40.0%
AACACACCAAAGAGGAATCA+AGG + chr1_3:23361796-23361815 None:intergenic 40.0%
GGTGTAAATTGGAGAACCAG+TGG + chr1_3:23359804-23359823 None:intergenic 45.0%
ACCTGTTGCAGAGATTGAAG+TGG + chr1_3:23359981-23360000 None:intergenic 45.0%
ATCTCTGCAACAGGTTGTGT+TGG - chr1_3:23359986-23360005 Msa0110500:three_prime_UTR 45.0%
AGCTGGGGAACATCTATAGT+TGG - chr1_3:23360025-23360044 Msa0110500:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_3:23360098-23360117 Msa0110500:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_3:23360115-23360134 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_3:23360231-23360250 Msa0110500:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_3:23360236-23360255 None:intergenic 45.0%
TGACATCTCATAGATGGAGG+AGG - chr1_3:23360611-23360630 Msa0110500:intron 45.0%
GACATCTCATAGATGGAGGA+GGG - chr1_3:23360612-23360631 Msa0110500:intron 45.0%
!! TTTCTAGGGGTGTTGAGACA+TGG - chr1_3:23360657-23360676 Msa0110500:intron 45.0%
GATAAGAGATTGGGGATGTG+TGG - chr1_3:23361120-23361139 Msa0110500:intron 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_3:23361405-23361424 Msa0110500:CDS 45.0%
AACAGAGACAAGGGCTGATT+AGG - chr1_3:23361415-23361434 Msa0110500:CDS 45.0%
GGTGTAAATTGGAGAACCAG+TGG + chr1_3:23359804-23359823 None:intergenic 45.0%
ACCTGTTGCAGAGATTGAAG+TGG + chr1_3:23359981-23360000 None:intergenic 45.0%
ATCTCTGCAACAGGTTGTGT+TGG - chr1_3:23359986-23360005 Msa0110500:three_prime_UTR 45.0%
AGCTGGGGAACATCTATAGT+TGG - chr1_3:23360025-23360044 Msa0110500:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_3:23360098-23360117 Msa0110500:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_3:23360115-23360134 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_3:23360231-23360250 Msa0110500:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_3:23360236-23360255 None:intergenic 45.0%
TGACATCTCATAGATGGAGG+AGG - chr1_3:23360611-23360630 Msa0110500:intron 45.0%
GACATCTCATAGATGGAGGA+GGG - chr1_3:23360612-23360631 Msa0110500:intron 45.0%
!! TTTCTAGGGGTGTTGAGACA+TGG - chr1_3:23360657-23360676 Msa0110500:intron 45.0%
GATAAGAGATTGGGGATGTG+TGG - chr1_3:23361120-23361139 Msa0110500:intron 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_3:23361405-23361424 Msa0110500:CDS 45.0%
AACAGAGACAAGGGCTGATT+AGG - chr1_3:23361415-23361434 Msa0110500:CDS 45.0%
GCCACTTCAATCTCTGCAAC+AGG - chr1_3:23359977-23359996 Msa0110500:three_prime_UTR 50.0%
AGAGATTGGGGATGTGTGGT+CGG - chr1_3:23361124-23361143 Msa0110500:intron 50.0%
CCATCATACGACCATCTCTG+AGG + chr1_3:23361241-23361260 None:intergenic 50.0%
CCTCAGAGATGGTCGTATGA+TGG - chr1_3:23361238-23361257 Msa0110500:intron 50.0%
GAGACAAGGGCTGATTAGGT+TGG - chr1_3:23361419-23361438 Msa0110500:CDS 50.0%
GCCACTTCAATCTCTGCAAC+AGG - chr1_3:23359977-23359996 Msa0110500:three_prime_UTR 50.0%
AGAGATTGGGGATGTGTGGT+CGG - chr1_3:23361124-23361143 Msa0110500:intron 50.0%
CCATCATACGACCATCTCTG+AGG + chr1_3:23361241-23361260 None:intergenic 50.0%
CCTCAGAGATGGTCGTATGA+TGG - chr1_3:23361238-23361257 Msa0110500:intron 50.0%
GAGACAAGGGCTGATTAGGT+TGG - chr1_3:23361419-23361438 Msa0110500:CDS 50.0%
!! CTAGGGGTGTTGAGACATGG+AGG - chr1_3:23360660-23360679 Msa0110500:intron 55.0%
GAGATTGGGGATGTGTGGTC+GGG - chr1_3:23361125-23361144 Msa0110500:intron 55.0%
! TCCACAAGGTGTCAGCTCAG+TGG - chr1_3:23361172-23361191 Msa0110500:intron 55.0%
ACCACTGAGCTGACACCTTG+TGG + chr1_3:23361176-23361195 None:intergenic 55.0%
CGGGAGGTAACACACCAAAG+AGG + chr1_3:23361804-23361823 None:intergenic 55.0%
!! CTAGGGGTGTTGAGACATGG+AGG - chr1_3:23360660-23360679 Msa0110500:intron 55.0%
GAGATTGGGGATGTGTGGTC+GGG - chr1_3:23361125-23361144 Msa0110500:intron 55.0%
! TCCACAAGGTGTCAGCTCAG+TGG - chr1_3:23361172-23361191 Msa0110500:intron 55.0%
ACCACTGAGCTGACACCTTG+TGG + chr1_3:23361176-23361195 None:intergenic 55.0%
CGGGAGGTAACACACCAAAG+AGG + chr1_3:23361804-23361823 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 23359780 23361824 23359780 ID=Msa0110500;Name=Msa0110500
chr1_3 mRNA 23359780 23361824 23359780 ID=Msa0110500-mRNA-1;Parent=Msa0110500;Name=Msa0110500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=194|1|1|1|1|1|2|345|127
chr1_3 exon 23359780 23360229 23359780 ID=Msa0110500-mRNA-1:exon:8180;Parent=Msa0110500-mRNA-1
chr1_3 exon 23361352 23361824 23361352 ID=Msa0110500-mRNA-1:exon:8179;Parent=Msa0110500-mRNA-1
chr1_3 five_prime_UTR 23361631 23361824 23361631 ID=Msa0110500-mRNA-1:five_prime_utr;Parent=Msa0110500-mRNA-1
chr1_3 CDS 23361352 23361630 23361352 ID=Msa0110500-mRNA-1:cds;Parent=Msa0110500-mRNA-1
chr1_3 CDS 23360125 23360229 23360125 ID=Msa0110500-mRNA-1:cds;Parent=Msa0110500-mRNA-1
chr1_3 three_prime_UTR 23359780 23360124 23359780 ID=Msa0110500-mRNA-1:three_prime_utr;Parent=Msa0110500-mRNA-1
Gene Sequence

>Msa0110500

ATGGCCACTTCAATCTCTGCAACAGGTTGTGTTGGTTCATCATTCTATGGAAGCTGGGGAACATCTATAGTTGGTGAAGATTACAGCATGTTGGCTAAGTCAGTTTCTTCGCAAGTTCGTATTGGAAGAGTTAGTAAGCCAGTGAGGTTGCAACCTATGATGAAGAATGTTAATGAAGGGAAAGGTATTTTTGCTCCAATTGTTGTGGTTACTCGTAATATTGTTGGAAAGAAACGTTTCAATCAGCTTAGAGGCAAAGCCATTGCTTTACACTCTCAGGTAATTACTGAATTCTGCAAATCAATAGGAGCAGATGCAAAACAGAGACAAGGGCTGATTAGGTTGGCTAAGAAGAATGGAGAATGGCTTGGTTTTCTTGCATGA

Protein sequence

>Msa0110500

MATSISATGCVGSSFYGSWGTSIVGEDYSMLAKSVSSQVRIGRVSKPVRLQPMMKNVNEGKGIFAPIVVVTRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGEWLGFLA*