Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1341250 | XP_003609606.2 | 94.751 | 743 | 13 | 2 | 1 | 741 | 1 | 719 | 0.0 | 1441 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1341250 | sp|Q75LJ4|ACBP6_ORYSJ | 34.772 | 417 | 238 | 7 | 27 | 437 | 115 | 503 | 5.47e-70 | 244 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1341250 | G7JJ54 | 94.751 | 743 | 13 | 2 | 1 | 741 | 1 | 719 | 0.0 | 1441 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1302220 | Msa1341250 | 0.838511 | 2.753363e-57 | -8.615850e-47 |
Msa0268060 | Msa1341250 | 0.860558 | 1.899743e-63 | -8.615850e-47 |
Msa1217360 | Msa1341250 | 0.860647 | 1.784800e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1341250 | MtrunA17_Chr4g0066851 | 94.751 | 743 | 13 | 2 | 1 | 741 | 1 | 719 | 0.0 | 1441 |
Msa1341250 | MtrunA17_Chr2g0286241 | 70.147 | 747 | 169 | 11 | 1 | 741 | 1 | 699 | 0.0 | 1022 |
Msa1341250 | MtrunA17_Chr7g0272641 | 33.077 | 390 | 230 | 4 | 27 | 415 | 121 | 480 | 6.19e-63 | 223 |
Msa1341250 | MtrunA17_Chr1g0197401 | 35.207 | 338 | 192 | 3 | 80 | 414 | 13 | 326 | 6.60e-62 | 216 |
Msa1341250 | MtrunA17_Chr1g0192821 | 26.471 | 272 | 169 | 5 | 82 | 353 | 65 | 305 | 1.47e-25 | 112 |
Msa1341250 | MtrunA17_Chr1g0192821 | 28.276 | 290 | 171 | 7 | 82 | 368 | 15 | 270 | 7.14e-24 | 107 |
Msa1341250 | MtrunA17_Chr1g0192821 | 33.023 | 215 | 136 | 6 | 205 | 416 | 55 | 264 | 1.86e-23 | 105 |
Msa1341250 | MtrunA17_Chr1g0192821 | 24.380 | 242 | 137 | 7 | 79 | 312 | 112 | 315 | 7.54e-17 | 84.7 |
Msa1341250 | MtrunA17_Chr1g0192821 | 32.484 | 157 | 97 | 4 | 262 | 416 | 11 | 160 | 1.08e-12 | 71.6 |
Msa1341250 | MtrunA17_Chr4g0061581 | 28.846 | 260 | 153 | 6 | 79 | 334 | 62 | 293 | 1.33e-23 | 106 |
Msa1341250 | MtrunA17_Chr4g0061581 | 24.917 | 301 | 180 | 10 | 89 | 377 | 19 | 285 | 1.23e-16 | 84.0 |
Msa1341250 | MtrunA17_Chr4g0061581 | 28.571 | 196 | 124 | 6 | 219 | 399 | 16 | 210 | 8.78e-16 | 81.3 |
Msa1341250 | MtrunA17_Chr1g0198221 | 26.032 | 315 | 171 | 12 | 88 | 376 | 13 | 291 | 1.31e-17 | 86.7 |
Msa1341250 | MtrunA17_Chr1g0198221 | 31.140 | 228 | 124 | 9 | 81 | 301 | 113 | 314 | 1.36e-11 | 67.8 |
Msa1341250 | MtrunA17_Chr2g0311721 | 27.143 | 210 | 131 | 7 | 208 | 410 | 53 | 247 | 3.68e-16 | 80.5 |
Msa1341250 | MtrunA17_Chr2g0311721 | 28.333 | 180 | 125 | 4 | 215 | 392 | 8 | 185 | 3.77e-14 | 74.3 |
Msa1341250 | MtrunA17_Chr2g0311721 | 23.684 | 266 | 154 | 8 | 82 | 334 | 60 | 289 | 1.71e-12 | 69.3 |
Msa1341250 | MtrunA17_Chr4g0074871 | 26.860 | 242 | 137 | 9 | 96 | 330 | 279 | 487 | 1.09e-15 | 81.6 |
Msa1341250 | MtrunA17_Chr4g0074871 | 25.483 | 259 | 157 | 7 | 92 | 349 | 333 | 556 | 1.76e-15 | 80.9 |
Msa1341250 | MtrunA17_Chr4g0074871 | 26.257 | 179 | 126 | 3 | 225 | 403 | 333 | 505 | 1.64e-11 | 68.2 |
Msa1341250 | MtrunA17_Chr1g0196221 | 25.701 | 214 | 122 | 8 | 139 | 330 | 7 | 205 | 4.43e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1341250 | AT5G18590.2 | 60.131 | 765 | 223 | 17 | 1 | 740 | 1 | 708 | 0.0 | 852 |
Msa1341250 | AT5G18590.1 | 60.131 | 765 | 223 | 17 | 1 | 740 | 1 | 708 | 0.0 | 852 |
Msa1341250 | AT3G05420.2 | 31.532 | 444 | 271 | 7 | 39 | 477 | 131 | 546 | 2.78e-66 | 232 |
Msa1341250 | AT3G05420.1 | 31.532 | 444 | 271 | 7 | 39 | 477 | 130 | 545 | 2.90e-66 | 232 |
Msa1341250 | AT5G27630.2 | 32.737 | 391 | 235 | 4 | 82 | 469 | 172 | 537 | 2.38e-63 | 222 |
Msa1341250 | AT5G27630.3 | 32.737 | 391 | 235 | 4 | 82 | 469 | 172 | 537 | 4.16e-63 | 223 |
Msa1341250 | AT5G27630.1 | 35.503 | 338 | 190 | 4 | 81 | 415 | 171 | 483 | 4.45e-63 | 223 |
Msa1341250 | AT5G27630.4 | 35.503 | 338 | 190 | 4 | 81 | 415 | 171 | 483 | 5.10e-63 | 223 |
Msa1341250 | AT5G04420.2 | 32.955 | 352 | 203 | 3 | 80 | 422 | 20 | 347 | 5.24e-57 | 203 |
Msa1341250 | AT5G04420.1 | 32.955 | 352 | 203 | 3 | 80 | 422 | 20 | 347 | 5.24e-57 | 203 |
Msa1341250 | AT5G04420.3 | 32.955 | 352 | 203 | 3 | 80 | 422 | 20 | 347 | 5.24e-57 | 203 |
Msa1341250 | AT1G18610.1 | 29.961 | 257 | 148 | 6 | 82 | 334 | 65 | 293 | 2.60e-26 | 114 |
Msa1341250 | AT1G18610.1 | 24.179 | 335 | 205 | 10 | 83 | 405 | 13 | 310 | 1.74e-16 | 84.0 |
Msa1341250 | AT1G18610.1 | 25.207 | 242 | 139 | 8 | 79 | 310 | 112 | 321 | 5.29e-14 | 75.9 |
Msa1341250 | AT1G18610.2 | 29.961 | 257 | 148 | 6 | 82 | 334 | 65 | 293 | 2.60e-26 | 114 |
Msa1341250 | AT1G18610.2 | 24.179 | 335 | 205 | 10 | 83 | 405 | 13 | 310 | 1.74e-16 | 84.0 |
Msa1341250 | AT1G18610.2 | 25.207 | 242 | 139 | 8 | 79 | 310 | 112 | 321 | 5.29e-14 | 75.9 |
Msa1341250 | AT1G74150.4 | 27.333 | 300 | 181 | 7 | 58 | 350 | 22 | 291 | 9.19e-24 | 106 |
Msa1341250 | AT1G74150.1 | 27.899 | 276 | 162 | 7 | 82 | 350 | 62 | 307 | 1.25e-23 | 106 |
Msa1341250 | AT1G74150.1 | 38.971 | 136 | 75 | 3 | 201 | 330 | 48 | 181 | 3.29e-17 | 86.3 |
Msa1341250 | AT1G74150.1 | 27.468 | 233 | 145 | 9 | 225 | 441 | 19 | 243 | 5.25e-16 | 82.4 |
Msa1341250 | AT1G74150.2 | 27.899 | 276 | 162 | 7 | 82 | 350 | 62 | 307 | 1.33e-23 | 106 |
Msa1341250 | AT1G74150.2 | 38.971 | 136 | 75 | 3 | 201 | 330 | 48 | 181 | 3.30e-17 | 86.3 |
Msa1341250 | AT1G74150.2 | 27.468 | 233 | 145 | 9 | 225 | 441 | 19 | 243 | 5.36e-16 | 82.4 |
Msa1341250 | AT1G74150.3 | 27.899 | 276 | 162 | 7 | 82 | 350 | 62 | 307 | 1.36e-23 | 106 |
Msa1341250 | AT1G74150.3 | 38.971 | 136 | 75 | 3 | 201 | 330 | 48 | 181 | 3.32e-17 | 86.3 |
Msa1341250 | AT1G74150.3 | 27.468 | 233 | 145 | 9 | 225 | 441 | 19 | 243 | 5.30e-16 | 82.4 |
Msa1341250 | AT4G04670.1 | 25.287 | 261 | 159 | 6 | 90 | 349 | 320 | 545 | 1.81e-17 | 87.8 |
Msa1341250 | AT4G04670.1 | 23.729 | 236 | 147 | 4 | 139 | 367 | 304 | 513 | 1.61e-11 | 68.6 |
Msa1341250 | AT4G04670.1 | 26.846 | 149 | 108 | 1 | 225 | 373 | 322 | 469 | 8.23e-11 | 66.2 |
Msa1341250 | AT3G07720.1 | 30.588 | 170 | 102 | 4 | 205 | 367 | 52 | 212 | 2.14e-17 | 84.7 |
Msa1341250 | AT3G07720.1 | 27.885 | 208 | 142 | 6 | 215 | 420 | 10 | 211 | 1.73e-13 | 72.8 |
Msa1341250 | AT2G36360.2 | 25.806 | 310 | 174 | 11 | 81 | 367 | 3 | 279 | 3.70e-17 | 85.5 |
Msa1341250 | AT2G36360.2 | 32.121 | 165 | 99 | 6 | 222 | 375 | 14 | 176 | 1.56e-14 | 77.4 |
Msa1341250 | AT2G36360.2 | 31.092 | 238 | 128 | 10 | 81 | 310 | 113 | 322 | 5.67e-12 | 69.3 |
Msa1341250 | AT2G36360.1 | 25.806 | 310 | 174 | 11 | 81 | 367 | 3 | 279 | 3.70e-17 | 85.5 |
Msa1341250 | AT2G36360.1 | 32.121 | 165 | 99 | 6 | 222 | 375 | 14 | 176 | 1.56e-14 | 77.4 |
Msa1341250 | AT2G36360.1 | 31.092 | 238 | 128 | 10 | 81 | 310 | 113 | 322 | 5.67e-12 | 69.3 |
Msa1341250 | AT2G36360.3 | 25.806 | 310 | 174 | 11 | 81 | 367 | 3 | 279 | 5.06e-17 | 85.1 |
Msa1341250 | AT2G36360.3 | 32.121 | 165 | 99 | 6 | 222 | 375 | 14 | 176 | 1.82e-14 | 77.4 |
Msa1341250 | AT2G36360.3 | 31.092 | 238 | 128 | 10 | 81 | 310 | 113 | 322 | 6.18e-12 | 69.3 |
Msa1341250 | AT2G36360.4 | 25.806 | 310 | 174 | 11 | 81 | 367 | 3 | 279 | 6.57e-17 | 85.1 |
Msa1341250 | AT2G36360.4 | 32.121 | 165 | 99 | 6 | 222 | 375 | 14 | 176 | 2.35e-14 | 77.0 |
Msa1341250 | AT2G36360.4 | 31.092 | 238 | 128 | 10 | 81 | 310 | 113 | 322 | 7.69e-12 | 68.9 |
Msa1341250 | AT2G36360.5 | 25.806 | 310 | 183 | 12 | 81 | 367 | 3 | 288 | 2.51e-16 | 83.2 |
Msa1341250 | AT1G74150.6 | 33.333 | 141 | 88 | 3 | 215 | 350 | 2 | 141 | 2.89e-15 | 79.0 |
Msa1341250 | AT1G74150.5 | 33.333 | 141 | 88 | 3 | 215 | 350 | 2 | 141 | 2.89e-15 | 79.0 |
Msa1341250 | AT3G16410.1 | 28.492 | 179 | 126 | 2 | 215 | 392 | 302 | 479 | 5.27e-13 | 72.8 |
Msa1341250 | AT3G16410.1 | 24.436 | 266 | 168 | 5 | 82 | 347 | 302 | 534 | 1.20e-11 | 68.6 |
Msa1341250 | AT1G03445.1 | 25.743 | 202 | 125 | 5 | 151 | 339 | 30 | 219 | 1.67e-12 | 71.6 |
Msa1341250 | AT3G16400.2 | 29.050 | 179 | 125 | 2 | 215 | 392 | 153 | 330 | 1.70e-12 | 70.9 |
Msa1341250 | AT3G16400.2 | 23.684 | 266 | 170 | 5 | 82 | 347 | 153 | 385 | 2.52e-11 | 67.0 |
Msa1341250 | AT3G16400.1 | 29.050 | 179 | 125 | 2 | 215 | 392 | 153 | 330 | 1.70e-12 | 70.9 |
Msa1341250 | AT3G16400.1 | 23.684 | 266 | 170 | 5 | 82 | 347 | 153 | 385 | 2.52e-11 | 67.0 |
Msa1341250 | AT1G03445.2 | 25.743 | 202 | 125 | 5 | 151 | 339 | 30 | 219 | 2.32e-12 | 71.2 |
Msa1341250 | AT2G33070.1 | 28.492 | 179 | 126 | 2 | 215 | 392 | 154 | 331 | 6.41e-12 | 68.9 |
Msa1341250 | AT2G33070.1 | 23.308 | 266 | 171 | 5 | 82 | 347 | 154 | 386 | 4.20e-11 | 66.6 |
Msa1341250 | AT2G33070.2 | 28.492 | 179 | 126 | 2 | 215 | 392 | 154 | 331 | 6.41e-12 | 68.9 |
Msa1341250 | AT2G33070.2 | 23.308 | 266 | 171 | 5 | 82 | 347 | 154 | 386 | 4.20e-11 | 66.6 |
Msa1341250 | AT5G50310.1 | 30.178 | 169 | 101 | 6 | 206 | 359 | 159 | 325 | 2.32e-11 | 67.8 |
Msa1341250 | AT5G50310.1 | 28.054 | 221 | 126 | 10 | 205 | 402 | 103 | 313 | 7.05e-11 | 66.2 |
Msa1341250 | AT2G33070.3 | 28.249 | 177 | 125 | 2 | 217 | 392 | 158 | 333 | 2.52e-11 | 67.0 |
Msa1341250 | AT5G48180.1 | 26.852 | 216 | 123 | 10 | 205 | 407 | 50 | 243 | 5.57e-11 | 65.1 |
Find 202 sgRNAs with CRISPR-Local
Find 491 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGTATTGTTGTCAATTTC+TGG | 0.133127 | tig0004809:-10542 | Msa1341250:CDS |
CCTTGCATGCAGGAATCTTT+AGG | 0.146868 | tig0004809:+10067 | None:intergenic |
TAGAAATTACCTTCCGAATT+TGG | 0.154916 | tig0004809:+10938 | None:intergenic |
GATAAAGTTCTTTATATATT+TGG | 0.156026 | tig0004809:-8516 | Msa1341250:CDS |
AAGTGAATATAAATCATTTA+AGG | 0.191129 | tig0004809:+8473 | None:intergenic |
ATTACATTGAGAATGGAATT+TGG | 0.204283 | tig0004809:+10779 | None:intergenic |
AGCTCTTATTTGATATTGTT+TGG | 0.210664 | tig0004809:-8792 | Msa1341250:CDS |
TGTAAACTTCAGAATCTTCT+AGG | 0.211311 | tig0004809:-11081 | Msa1341250:intron |
CCCGGAAGTGACAGAATTTC+AGG | 0.221004 | tig0004809:-9485 | Msa1341250:CDS |
ATATAAATCATTTAAGGTTT+TGG | 0.224898 | tig0004809:+8479 | None:intergenic |
CCAGGTATCTTATGGGAAAA+AGG | 0.239592 | tig0004809:-9534 | Msa1341250:intron |
ATAAGTTGTTGGCCTCTTCT+TGG | 0.244634 | tig0004809:+5030 | None:intergenic |
GCTCTTATTTGATATTGTTT+GGG | 0.245557 | tig0004809:-8791 | Msa1341250:CDS |
TAGCATGCCGCTGCTGTTAT+TGG | 0.270408 | tig0004809:-10349 | Msa1341250:CDS |
AAGACTACCTTGTTGCATTT+GGG | 0.272272 | tig0004809:-6437 | Msa1341250:CDS |
TATAGATGCAGGACCTTTAC+TGG | 0.281962 | tig0004809:+6257 | None:intergenic |
AAAGACTACCTTGTTGCATT+TGG | 0.288100 | tig0004809:-6438 | Msa1341250:CDS |
GTAAAGTAGCAGCCCTAATA+AGG | 0.302289 | tig0004809:-5223 | Msa1341250:CDS |
CAAACAGAGATTGCAATCTA+TGG | 0.305635 | tig0004809:-4570 | Msa1341250:CDS |
ACCTGAAATTCTGTCACTTC+CGG | 0.311291 | tig0004809:+9484 | None:intergenic |
CTTGCATGCAGGAATCTTTA+GGG | 0.318925 | tig0004809:+10068 | None:intergenic |
CGTGCAGTGAAGTAGATAAT+TGG | 0.321646 | tig0004809:-4510 | Msa1341250:exon |
TCTCGTAGACGCACCAAATT+CGG | 0.323781 | tig0004809:-10951 | Msa1341250:CDS |
GGATAATGTTTACCAAACTA+TGG | 0.327359 | tig0004809:+10043 | None:intergenic |
CCTGAAATTCTGTCACTTCC+GGG | 0.334087 | tig0004809:+9485 | None:intergenic |
GCTCAGGCGGTTCCGAGAAT+TGG | 0.334965 | tig0004809:-10562 | Msa1341250:CDS |
AATCTTTAGGGGCAGACTAC+TGG | 0.343382 | tig0004809:+10080 | None:intergenic |
CTACTTCACTGCACGTGAAA+TGG | 0.348878 | tig0004809:+4518 | None:intergenic |
CCATAAAAGCAGACAGGAAA+TGG | 0.356365 | tig0004809:-5123 | Msa1341250:CDS |
TAAGTTGTTGGCCTCTTCTT+GGG | 0.360114 | tig0004809:+5031 | None:intergenic |
AATGGAATTTGGAATTCGTT+TGG | 0.360327 | tig0004809:+10790 | None:intergenic |
GGTACTAAATGGTATATTAC+AGG | 0.362413 | tig0004809:-7890 | Msa1341250:CDS |
TTGGGATGCCTAACAGTAAC+TGG | 0.362709 | tig0004809:+10809 | None:intergenic |
CATTATCAATTTCATGAGAA+TGG | 0.366750 | tig0004809:+10618 | None:intergenic |
CTGCACGTGAAATGGTTTCC+TGG | 0.376171 | tig0004809:+4526 | None:intergenic |
CTACTTTACTTTCATAGTAT+TGG | 0.380126 | tig0004809:+5237 | None:intergenic |
TTAATTAATTACATTGAGAA+TGG | 0.381803 | tig0004809:+10772 | None:intergenic |
TCAAAGCTGTTTGTAGAGTA+AGG | 0.387921 | tig0004809:+11007 | None:intergenic |
TCTGCAGTTGAACATGGTTC+TGG | 0.388697 | tig0004809:-6138 | Msa1341250:CDS |
GTTGCTACATGGTTCAATCT+TGG | 0.394586 | tig0004809:+8549 | None:intergenic |
TCAGGTGGAAGTGTTGGAAT+TGG | 0.395673 | tig0004809:-6316 | Msa1341250:intron |
ATGGAATTTGGAATTCGTTT+GGG | 0.396792 | tig0004809:+10791 | None:intergenic |
CTCTCTGTCTCTGTTTATCC+AGG | 0.401604 | tig0004809:-11420 | Msa1341250:five_prime_UTR |
TGCATGCAAGGGCCATAGTT+TGG | 0.402210 | tig0004809:-10055 | Msa1341250:intron |
GATCCTGATTTATCATTCTC+AGG | 0.407816 | tig0004809:+5281 | None:intergenic |
GAAGATGGGGATGCAGTTAC+CGG | 0.409349 | tig0004809:-10650 | Msa1341250:CDS |
ACTTCTTAATATGTTATTAG+TGG | 0.410388 | tig0004809:+4320 | None:intergenic |
AGCATGCCGCTGCTGTTATT+GGG | 0.410438 | tig0004809:-10348 | Msa1341250:CDS |
GTGCATCACTTTCAAATACT+TGG | 0.411735 | tig0004809:+5327 | None:intergenic |
TTTCCTGAGAATGATAAATC+AGG | 0.412257 | tig0004809:-5284 | Msa1341250:CDS |
GACACAGAATAAAATAATAA+TGG | 0.413226 | tig0004809:+11297 | None:intergenic |
GGCCGATGCATTGAAGGAAA+TGG | 0.413822 | tig0004809:-5090 | Msa1341250:CDS |
AGTTGTAAAGTGAAGATGTT+TGG | 0.415894 | tig0004809:-10978 | Msa1341250:exon |
CTCAGGCGGTTCCGAGAATT+GGG | 0.419891 | tig0004809:-10561 | Msa1341250:CDS |
GCAATGGTCACAGTGTTGTC+AGG | 0.422481 | tig0004809:-8818 | Msa1341250:CDS |
TGGAATGTTGGAGGGTCAAC+TGG | 0.425176 | tig0004809:-5195 | Msa1341250:CDS |
TGCAGCTTCTCTGCTTGCCA+TGG | 0.428507 | tig0004809:+5166 | None:intergenic |
AGGGAGAAGGAGAAGAAGAT+GGG | 0.429455 | tig0004809:-10664 | Msa1341250:CDS |
ACTGCTGCTTCGGTTCAAGC+TGG | 0.430933 | tig0004809:-11181 | Msa1341250:five_prime_UTR |
CAGGGAGAAGGAGAAGAAGA+TGG | 0.431384 | tig0004809:-10665 | Msa1341250:CDS |
GAATAGAAGTACTGCTGCTT+CGG | 0.431494 | tig0004809:-11191 | Msa1341250:five_prime_UTR |
GAAGGACAAGTGTTGTTGTC+CGG | 0.435488 | tig0004809:-5368 | Msa1341250:CDS |
GACTTATCAGGTGGAAGTGT+TGG | 0.441862 | tig0004809:-6322 | Msa1341250:intron |
AATACACTGTTACTAATTGA+AGG | 0.447013 | tig0004809:+4351 | None:intergenic |
CTAGAAGTCCAGTTACTGTT+AGG | 0.451050 | tig0004809:-10817 | Msa1341250:CDS |
AGCAGAGAAGCTGCAGAGAA+AGG | 0.455687 | tig0004809:-5158 | Msa1341250:CDS |
TGACAACAATACCCAATTCT+CGG | 0.457202 | tig0004809:+10550 | None:intergenic |
CGTAAACTGATGAACATTAG+TGG | 0.459962 | tig0004809:-5407 | Msa1341250:CDS |
CTCTTATTTGATATTGTTTG+GGG | 0.460011 | tig0004809:-8790 | Msa1341250:CDS |
GAGATGTATACATTGAATCT+AGG | 0.462702 | tig0004809:+10506 | None:intergenic |
TGAGCTACAAGTACTGATAT+TGG | 0.463782 | tig0004809:+10580 | None:intergenic |
AAAATTGGCCGATGCATTGA+AGG | 0.464098 | tig0004809:-5096 | Msa1341250:CDS |
GGTGATGGTACTGCTGGTCC+TGG | 0.464502 | tig0004809:+11402 | None:intergenic |
GTTGTAAAGTGAAGATGTTT+GGG | 0.464609 | tig0004809:-10977 | Msa1341250:exon |
AAAAGGAATGAGCACCTTGT+TGG | 0.466619 | tig0004809:+7193 | None:intergenic |
TTACGAAGGGAGACATTGCT+TGG | 0.466763 | tig0004809:+6075 | None:intergenic |
GGGTCAACTGGCAGCTTCCA+TGG | 0.467509 | tig0004809:-5183 | Msa1341250:CDS |
CCTAAAGATTCCTGCATGCA+AGG | 0.471695 | tig0004809:-10067 | Msa1341250:CDS |
TTGTTGTTGTCTTAGATTGA+AGG | 0.472704 | tig0004809:-10861 | Msa1341250:intron |
ATGAGAATGGCCACTTGAGC+CGG | 0.473523 | tig0004809:+10631 | None:intergenic |
TTGTCCACTCTGACAACGTT+CGG | 0.473655 | tig0004809:-5001 | Msa1341250:CDS |
TACGAAGGGAGACATTGCTT+GGG | 0.475811 | tig0004809:+6076 | None:intergenic |
TTCCATTTCCTTCAATGCAT+CGG | 0.477323 | tig0004809:+5088 | None:intergenic |
ATCTTTAGGGGCAGACTACT+GGG | 0.480997 | tig0004809:+10081 | None:intergenic |
AACATAGAGTAATTAAATGT+GGG | 0.483555 | tig0004809:+11264 | None:intergenic |
GATGTAGCCGTACCTGTAGT+TGG | 0.486165 | tig0004809:+4796 | None:intergenic |
AAGGACAAGTGTTGTTGTCC+GGG | 0.487114 | tig0004809:-5367 | Msa1341250:CDS |
TTGATCTCAAGTCGTTGACT+TGG | 0.492787 | tig0004809:-8725 | Msa1341250:CDS |
TCGACACGAGGAGTTATTGC+AGG | 0.493083 | tig0004809:-4837 | Msa1341250:CDS |
AACAGAGTCAACTAAGCGTT+GGG | 0.493230 | tig0004809:+6179 | None:intergenic |
TTTACCTCATTTCAGGGAGA+AGG | 0.493393 | tig0004809:-10677 | Msa1341250:intron |
AGAGTAATTAAATGTGGGGC+AGG | 0.494334 | tig0004809:+11269 | None:intergenic |
ATATTCACTTGACTTTGAAA+CGG | 0.495952 | tig0004809:-8460 | Msa1341250:intron |
GAATTACCAGGGTTTCAGCT+TGG | 0.497187 | tig0004809:-6481 | Msa1341250:intron |
CATCATAGAGAGTTGCTACA+TGG | 0.497357 | tig0004809:+8538 | None:intergenic |
GTAAACTTCAGAATCTTCTA+GGG | 0.497740 | tig0004809:-11080 | Msa1341250:intron |
AAAGTTCTTTATATATTTGG+AGG | 0.498508 | tig0004809:-8513 | Msa1341250:CDS |
GACAATGTTTGATAAGTTGT+TGG | 0.502003 | tig0004809:+5019 | None:intergenic |
AGATGGAAGTTCTTTACCTC+AGG | 0.503667 | tig0004809:-5998 | Msa1341250:intron |
GGAGCCAAGGTTAATATTGA+AGG | 0.505831 | tig0004809:-5386 | Msa1341250:CDS |
CTTGGTGCTTGTGCAATACA+AGG | 0.512632 | tig0004809:-6463 | Msa1341250:CDS |
AATATCAGTACTTGTAGCTC+AGG | 0.512794 | tig0004809:-10578 | Msa1341250:CDS |
TTATTGCAGGGGAAAGAGCT+AGG | 0.513791 | tig0004809:-4824 | Msa1341250:CDS |
AAGTGAGTGCTGGTCACTCA+TGG | 0.520749 | tig0004809:-9372 | Msa1341250:CDS |
TTCCATCCATCACCTAGAGC+TGG | 0.522075 | tig0004809:-7932 | Msa1341250:CDS |
CTGGTCACTCATGGAGGCAA+AGG | 0.527028 | tig0004809:-9363 | Msa1341250:CDS |
GTAATTGGGATCTATAGATT+CGG | 0.527362 | tig0004809:+6101 | None:intergenic |
ATCACTTACGTGTAGTGAAG+TGG | 0.527387 | tig0004809:+8699 | None:intergenic |
GTTGGCGGTGAGTCTGCTAC+TGG | 0.528913 | tig0004809:-10310 | Msa1341250:CDS |
TCTATTAACGTGAGCTGAGG+TGG | 0.529972 | tig0004809:-4256 | Msa1341250:three_prime_UTR |
CAACAGAGTCAACTAAGCGT+TGG | 0.530123 | tig0004809:+6178 | None:intergenic |
GGAGGCAAAGGGAGACATAC+CGG | 0.532282 | tig0004809:-9351 | Msa1341250:intron |
CGCGATCAAATTGCTTACGA+AGG | 0.532290 | tig0004809:+6061 | None:intergenic |
CTGAAGCAAGCAAGCAAGCA+AGG | 0.533769 | tig0004809:+11213 | None:intergenic |
TCTTGATAGGTTGCTCGCAA+TGG | 0.536277 | tig0004809:-8834 | Msa1341250:intron |
ATCGATTCGAACGTTACGTT+AGG | 0.536783 | tig0004809:+11445 | None:intergenic |
GCATGACGTGGCCTTCCTCA+AGG | 0.542257 | tig0004809:-4973 | Msa1341250:CDS |
TCTGATTAGTGTAGATAATG+AGG | 0.542929 | tig0004809:-4433 | Msa1341250:three_prime_UTR |
ATCTGTCCATAAAAGCAGAC+AGG | 0.543682 | tig0004809:-5129 | Msa1341250:CDS |
AAACTATGGCCCTTGCATGC+AGG | 0.544560 | tig0004809:+10057 | None:intergenic |
TGCACGTGAAATGGTTTCCT+GGG | 0.544565 | tig0004809:+4527 | None:intergenic |
AGCTAGGGCATTCCAACTAC+AGG | 0.545831 | tig0004809:-4808 | Msa1341250:intron |
AAGGTTCAGCAGCTTTCTGA+TGG | 0.547869 | tig0004809:-10842 | Msa1341250:CDS |
GACTACCTTGTTGCATTTGG+GGG | 0.548558 | tig0004809:-6435 | Msa1341250:CDS |
AGACGTTCAACTCCCAGTAA+AGG | 0.548803 | tig0004809:-6270 | Msa1341250:CDS |
AGACTACCTTGTTGCATTTG+GGG | 0.550546 | tig0004809:-6436 | Msa1341250:CDS |
CTGCTGCTTCGGTTCAAGCT+GGG | 0.551961 | tig0004809:-11180 | Msa1341250:intron |
CAAAGCTGTTTGTAGAGTAA+GGG | 0.552495 | tig0004809:+11008 | None:intergenic |
TCACCTAGAGCTGGTTGTTG+TGG | 0.552879 | tig0004809:-7923 | Msa1341250:CDS |
GGGAGAAGGAGAAGAAGATG+GGG | 0.552987 | tig0004809:-10663 | Msa1341250:CDS |
TAACATAGAGTAATTAAATG+TGG | 0.553933 | tig0004809:+11263 | None:intergenic |
TAATTACTCCTATTAGCTTG+AGG | 0.554771 | tig0004809:+11369 | None:intergenic |
TTCTTGGGCCAACTCTAGAC+CGG | 0.555005 | tig0004809:+5046 | None:intergenic |
GATGCAGTTACCGGCTCAAG+TGG | 0.556942 | tig0004809:-10641 | Msa1341250:CDS |
TTGTCCTTCAATATTAACCT+TGG | 0.557383 | tig0004809:+5382 | None:intergenic |
CTTTGTCAAACCTGATTAGA+CGG | 0.559990 | tig0004809:+6399 | None:intergenic |
AAGATGGACAAGAACTCAGA+TGG | 0.560785 | tig0004809:-6015 | Msa1341250:CDS |
TTGTTGGTAGTGATAGAAGA+TGG | 0.561523 | tig0004809:+7209 | None:intergenic |
ACGCCACAACAACCAGCTCT+AGG | 0.562219 | tig0004809:+7920 | None:intergenic |
GGGAATAAGATCATAGTGGT+TGG | 0.563677 | tig0004809:-10328 | Msa1341250:CDS |
GAAGCTAGCCGGTCTAGAGT+TGG | 0.567033 | tig0004809:-5054 | Msa1341250:CDS |
TGGTCAAGAGTAAAGGTTCG+AGG | 0.567595 | tig0004809:-7956 | Msa1341250:CDS |
GATGGCATGGTCAAGAGTAA+AGG | 0.568782 | tig0004809:-7963 | Msa1341250:CDS |
AACCAGCTCTAGGTGATGGA+TGG | 0.570411 | tig0004809:+7930 | None:intergenic |
GAAGGGAGACATTGCTTGGG+GGG | 0.571244 | tig0004809:+6079 | None:intergenic |
TATACATTGAATCTAGGAGC+GGG | 0.571927 | tig0004809:+10512 | None:intergenic |
TCTAGAGTTGGCCCAAGAAG+AGG | 0.572395 | tig0004809:-5042 | Msa1341250:CDS |
ATTGGAGGGAAAACAGATCC+CGG | 0.572579 | tig0004809:-9503 | Msa1341250:CDS |
GAAGGATAGATAGAACTAAG+AGG | 0.573056 | tig0004809:+4369 | None:intergenic |
CTAAAGATTCCTGCATGCAA+GGG | 0.575942 | tig0004809:-10066 | Msa1341250:CDS |
TGGATTGTTAGATGATGTGC+AGG | 0.577622 | tig0004809:-10290 | Msa1341250:intron |
TTACTCCTATTAGCTTGAGG+TGG | 0.583113 | tig0004809:+11372 | None:intergenic |
CAACAACCAGCTCTAGGTGA+TGG | 0.583967 | tig0004809:+7926 | None:intergenic |
ATCTAAAACAGCCTTGAGGA+AGG | 0.584324 | tig0004809:+4962 | None:intergenic |
CGACACGAGGAGTTATTGCA+GGG | 0.588443 | tig0004809:-4836 | Msa1341250:CDS |
TGGTCACTCATGGAGGCAAA+GGG | 0.590172 | tig0004809:-9362 | Msa1341250:CDS |
TTGATACAGAAAGTGAGTGC+TGG | 0.592237 | tig0004809:-9382 | Msa1341250:CDS |
CAATGGTCACAGTGTTGTCA+GGG | 0.593372 | tig0004809:-8817 | Msa1341250:CDS |
GTAAAGCTTTGATGTTGCCA+TGG | 0.593853 | tig0004809:+10110 | None:intergenic |
ACATGGTTCAATCTTGGAGA+AGG | 0.593948 | tig0004809:+8555 | None:intergenic |
TTAGCATCTGCAGTTGAACA+TGG | 0.594598 | tig0004809:-6144 | Msa1341250:CDS |
TATTGGGAATAAGATCATAG+TGG | 0.595128 | tig0004809:-10332 | Msa1341250:CDS |
GTACTAAATGGTATATTACA+GGG | 0.598606 | tig0004809:-7889 | Msa1341250:CDS |
GATGAACATTAGTGGAGCCA+AGG | 0.598955 | tig0004809:-5399 | Msa1341250:CDS |
ATTCGAACGTTACGTTAGGT+AGG | 0.605733 | tig0004809:+11449 | None:intergenic |
TTACTGCGAGAGAAGCTAGC+CGG | 0.609620 | tig0004809:-5065 | Msa1341250:CDS |
TTGCATGCAGGAATCTTTAG+GGG | 0.610352 | tig0004809:+10069 | None:intergenic |
ATACAATGCAGATGTCAAGA+TGG | 0.612562 | tig0004809:-6031 | Msa1341250:CDS |
ATCAGTACTTGTAGCTCAGG+CGG | 0.612630 | tig0004809:-10575 | Msa1341250:CDS |
AAGCTGAGAGGCTAATCTAG+TGG | 0.613975 | tig0004809:+6212 | None:intergenic |
AATAAGATCATAGTGGTTGG+CGG | 0.614289 | tig0004809:-10325 | Msa1341250:CDS |
GCGATCAAATTGCTTACGAA+GGG | 0.614392 | tig0004809:+6062 | None:intergenic |
AAAAGGCACTTCTCATTGGA+GGG | 0.617797 | tig0004809:-9517 | Msa1341250:CDS |
ATAGATGCAGGACCTTTACT+GGG | 0.619077 | tig0004809:+6258 | None:intergenic |
CGAAGGGAGACATTGCTTGG+GGG | 0.620540 | tig0004809:+6078 | None:intergenic |
TATTGCAGGGGAAAGAGCTA+GGG | 0.628345 | tig0004809:-4823 | Msa1341250:CDS |
CTGTCTATTAACGTGAGCTG+AGG | 0.628586 | tig0004809:-4259 | Msa1341250:three_prime_UTR |
ACGAAGGGAGACATTGCTTG+GGG | 0.632300 | tig0004809:+6077 | None:intergenic |
CAGTTGAACATGGTTCTGGA+AGG | 0.632339 | tig0004809:-6134 | Msa1341250:CDS |
ACAGAATAAAATAATAATGG+TGG | 0.633432 | tig0004809:+11300 | None:intergenic |
CGAGCCGAACGTTGTCAGAG+TGG | 0.638950 | tig0004809:+4997 | None:intergenic |
ACGTTAGGTAGGTAGCAAGA+TGG | 0.644922 | tig0004809:+11460 | None:intergenic |
CTTATTCCCAATAACAGCAG+CGG | 0.650581 | tig0004809:+10342 | None:intergenic |
CGTTCGGCTCGAGCATGACG+TGG | 0.650902 | tig0004809:-4985 | Msa1341250:CDS |
TCTTATTTGATATTGTTTGG+GGG | 0.654743 | tig0004809:-8789 | Msa1341250:CDS |
TAGGAGTTGCACTCGACACG+AGG | 0.657321 | tig0004809:-4849 | Msa1341250:CDS |
ATCGAACTTCTACTACACCC+AGG | 0.658471 | tig0004809:-4544 | Msa1341250:CDS |
ATCTTCTATCACTACCAACA+AGG | 0.664353 | tig0004809:-7207 | Msa1341250:intron |
ACATAGAGTAATTAAATGTG+GGG | 0.664772 | tig0004809:+11265 | None:intergenic |
GTATACATTGAATCTAGGAG+CGG | 0.665030 | tig0004809:+10511 | None:intergenic |
TTGGTAGTGATAGAAGATGG+AGG | 0.668670 | tig0004809:+7212 | None:intergenic |
GATTAGTGTAGATAATGAGG+AGG | 0.671629 | tig0004809:-4430 | Msa1341250:three_prime_UTR |
CTGGATAAACAGAGACAGAG+AGG | 0.674018 | tig0004809:+11421 | None:intergenic |
TACTAAATGGTATATTACAG+GGG | 0.679666 | tig0004809:-7888 | Msa1341250:CDS |
GTAGACGCACCAAATTCGGA+AGG | 0.687181 | tig0004809:-10947 | Msa1341250:intron |
TGAGTGCTGGTCACTCATGG+AGG | 0.691926 | tig0004809:-9369 | Msa1341250:CDS |
AGTGATGCACTAGAAAGTGA+AGG | 0.692132 | tig0004809:-5314 | Msa1341250:CDS |
TATCATCTAAAACAGCCTTG+AGG | 0.698493 | tig0004809:+4958 | None:intergenic |
ACTAAATGGTATATTACAGG+GGG | 0.704681 | tig0004809:-7887 | Msa1341250:CDS |
TAATGTTCATCAGTTTACGA+CGG | 0.715221 | tig0004809:+5411 | None:intergenic |
GGAACAGTGATTAAGCTGAG+AGG | 0.722001 | tig0004809:+6200 | None:intergenic |
GACACGAGGAGTTATTGCAG+GGG | 0.745141 | tig0004809:-4835 | Msa1341250:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATCATTCAAATATTTT+GGG | - | tig0004809:8079-8098 | Msa1341250:intron | 10.0% |
!!! | AAATAATATTGTTATTACTA+AGG | + | tig0004809:9148-9167 | None:intergenic | 10.0% |
!! | AATTAAAGACAAAACAAAAT+TGG | + | tig0004809:4568-4587 | None:intergenic | 15.0% |
!! | TTAATTAATTACATTGAGAA+TGG | + | tig0004809:4937-4956 | None:intergenic | 15.0% |
!!! | ACTAATTGTTATTGTAAAAT+TGG | - | tig0004809:4987-5006 | Msa1341250:CDS | 15.0% |
!!! | TAATTTTCTCTTATATAACT+TGG | + | tig0004809:5917-5936 | None:intergenic | 15.0% |
!! | AAAATTAAAAGAAAATGACT+GGG | - | tig0004809:5930-5949 | Msa1341250:intron | 15.0% |
!!! | ACATTTTAAAAAAGTTAACT+AGG | - | tig0004809:6556-6575 | Msa1341250:intron | 15.0% |
!!! | ATTTGAATTTTGAAAAGAAA+AGG | - | tig0004809:7051-7070 | Msa1341250:intron | 15.0% |
!! | GATAAAGTTCTTTATATATT+TGG | - | tig0004809:7190-7209 | Msa1341250:intron | 15.0% |
!!! | ATATAAATCATTTAAGGTTT+TGG | + | tig0004809:7230-7249 | None:intergenic | 15.0% |
!! | AAGTGAATATAAATCATTTA+AGG | + | tig0004809:7236-7255 | None:intergenic | 15.0% |
!! | ATCAAATAATATATAGTGAA+GGG | + | tig0004809:7699-7718 | None:intergenic | 15.0% |
!! | TATCAAATAATATATAGTGA+AGG | + | tig0004809:7700-7719 | None:intergenic | 15.0% |
!! | TATTTGAATGATTAAAGAAA+TGG | + | tig0004809:8075-8094 | None:intergenic | 15.0% |
!!! | CTTTAATCATTCAAATATTT+TGG | - | tig0004809:8078-8097 | Msa1341250:intron | 15.0% |
!!! | TGGAGAAATAATATTTTTAA+AGG | - | tig0004809:8130-8149 | Msa1341250:intron | 15.0% |
!! | TTACCAAAAAAAGATATTAT+TGG | - | tig0004809:8255-8274 | Msa1341250:intron | 15.0% |
!! | TACCAAAAAAAGATATTATT+GGG | - | tig0004809:8256-8275 | Msa1341250:intron | 15.0% |
!! | AAAATCTACTTCAATAATAT+TGG | + | tig0004809:8331-8350 | None:intergenic | 15.0% |
!! | TTGATATTGTAAAAAATGAA+TGG | - | tig0004809:8453-8472 | Msa1341250:intron | 15.0% |
!! | ACAGAATAAAATAATAATGG+TGG | + | tig0004809:4409-4428 | None:intergenic | 20.0% |
!! | GACACAGAATAAAATAATAA+TGG | + | tig0004809:4412-4431 | None:intergenic | 20.0% |
!! | AACATAGAGTAATTAAATGT+GGG | + | tig0004809:4445-4464 | None:intergenic | 20.0% |
!! | TAACATAGAGTAATTAAATG+TGG | + | tig0004809:4446-4465 | None:intergenic | 20.0% |
!! | ACAATAACAATTAGTAAAGT+TGG | + | tig0004809:4982-5001 | None:intergenic | 20.0% |
!!! | TATGAGTTGAGAAATTTAAT+GGG | + | tig0004809:5793-5812 | None:intergenic | 20.0% |
!!! | TTATGAGTTGAGAAATTTAA+TGG | + | tig0004809:5794-5813 | None:intergenic | 20.0% |
!! | GAAAATTAAAAGAAAATGAC+TGG | - | tig0004809:5929-5948 | Msa1341250:intron | 20.0% |
!! | AAAGTTCTTTATATATTTGG+AGG | - | tig0004809:7193-7212 | Msa1341250:intron | 20.0% |
!! | TTGTATCTTTACTATATTAG+TGG | - | tig0004809:7295-7314 | Msa1341250:intron | 20.0% |
!! | TCAAATAATATATAGTGAAG+GGG | + | tig0004809:7698-7717 | None:intergenic | 20.0% |
!!! | TATTATTTCTCCAATTCTAA+AGG | + | tig0004809:8123-8142 | None:intergenic | 20.0% |
!! | TTTAAAGGAAAATTAGTTAC+AGG | - | tig0004809:8145-8164 | Msa1341250:intron | 20.0% |
!! | TTAAAGGAAAATTAGTTACA+GGG | - | tig0004809:8146-8165 | Msa1341250:intron | 20.0% |
!!! | TTGGGAAGTAAAATTTTATT+GGG | - | tig0004809:8229-8248 | Msa1341250:intron | 20.0% |
!!! | GATTTTATTTTAGTCAGTAT+TGG | - | tig0004809:8345-8364 | Msa1341250:intron | 20.0% |
!! | TTTGTTTATAAATTGTGCTA+TGG | - | tig0004809:8371-8390 | Msa1341250:intron | 20.0% |
!! | TTAGTTATTGTGTTAATTGA+TGG | - | tig0004809:8570-8589 | Msa1341250:intron | 20.0% |
!! | AACTAAAGAGTTATATTTGA+AGG | + | tig0004809:8644-8663 | None:intergenic | 20.0% |
!! | TTATTCATTTACTACAATAG+AGG | - | tig0004809:8678-8697 | Msa1341250:intron | 20.0% |
!! | ACATCATATTGTAAAAATGA+GGG | + | tig0004809:9052-9071 | None:intergenic | 20.0% |
!! | AACATCATATTGTAAAAATG+AGG | + | tig0004809:9053-9072 | None:intergenic | 20.0% |
!! | CTAACATCAATAAAGAAAAA+AGG | + | tig0004809:9741-9760 | None:intergenic | 20.0% |
!! | ACATGCATAAATATTAGATA+AGG | - | tig0004809:9897-9916 | Msa1341250:intron | 20.0% |
!! | ATGACCAAAAAAATGAAAAA+AGG | - | tig0004809:9980-9999 | Msa1341250:intron | 20.0% |
!! | GAATCCTATTAAAGAAAATA+CGG | + | tig0004809:10092-10111 | None:intergenic | 20.0% |
!! | ACTTCTTAATATGTTATTAG+TGG | + | tig0004809:11389-11408 | None:intergenic | 20.0% |
! | ACATAGAGTAATTAAATGTG+GGG | + | tig0004809:4444-4463 | None:intergenic | 25.0% |
! | ATTACATTGAGAATGGAATT+TGG | + | tig0004809:4930-4949 | None:intergenic | 25.0% |
! | CATTATCAATTTCATGAGAA+TGG | + | tig0004809:5091-5110 | None:intergenic | 25.0% |
! | TCAGATCAAACAATAATAGT+TGG | + | tig0004809:5241-5260 | None:intergenic | 25.0% |
! | ATAATGTGGTTATTCACATA+AGG | + | tig0004809:5827-5846 | None:intergenic | 25.0% |
! | TCACTAATTGATGAATAATG+TGG | + | tig0004809:5841-5860 | None:intergenic | 25.0% |
! | TGTGCATGATATAGATATTA+TGG | - | tig0004809:5861-5880 | Msa1341250:intron | 25.0% |
! | GTGCATGATATAGATATTAT+GGG | - | tig0004809:5862-5881 | Msa1341250:intron | 25.0% |
!!! | TAACGATTTTAACATGTTTG+GGG | + | tig0004809:5889-5908 | None:intergenic | 25.0% |
!!! | CTAACGATTTTAACATGTTT+GGG | + | tig0004809:5890-5909 | None:intergenic | 25.0% |
!!! | TCTAACGATTTTAACATGTT+TGG | + | tig0004809:5891-5910 | None:intergenic | 25.0% |
!! | TAATTTTACCAGGTATCTTA+TGG | - | tig0004809:6164-6183 | Msa1341250:CDS | 25.0% |
!! | AATTTTACCAGGTATCTTAT+GGG | - | tig0004809:6165-6184 | Msa1341250:CDS | 25.0% |
!! | ATATTTTTCACACATGACAA+AGG | - | tig0004809:6633-6652 | Msa1341250:intron | 25.0% |
!! | AGCTCTTATTTGATATTGTT+TGG | - | tig0004809:6914-6933 | Msa1341250:intron | 25.0% |
!! | GCTCTTATTTGATATTGTTT+GGG | - | tig0004809:6915-6934 | Msa1341250:intron | 25.0% |
!! | CTCTTATTTGATATTGTTTG+GGG | - | tig0004809:6916-6935 | Msa1341250:intron | 25.0% |
!! | TCTTATTTGATATTGTTTGG+GGG | - | tig0004809:6917-6936 | Msa1341250:intron | 25.0% |
!!! | GAATTTTGAAAAGAAAAGGT+TGG | - | tig0004809:7055-7074 | Msa1341250:intron | 25.0% |
!! | ATTCCTTTTGATCTACTATA+TGG | - | tig0004809:7111-7130 | Msa1341250:intron | 25.0% |
! | AATCCATATAGTAGATCAAA+AGG | + | tig0004809:7117-7136 | None:intergenic | 25.0% |
!!! | ATTTAAGGTTTTGGATTTTG+AGG | + | tig0004809:7221-7240 | None:intergenic | 25.0% |
!! | ATATTCACTTGACTTTGAAA+CGG | - | tig0004809:7246-7265 | Msa1341250:CDS | 25.0% |
!! | ATATGTTTCTTTTCTTCAGA+TGG | - | tig0004809:7725-7744 | Msa1341250:intron | 25.0% |
! | GTACTAAATGGTATATTACA+GGG | - | tig0004809:7817-7836 | Msa1341250:intron | 25.0% |
! | TACTAAATGGTATATTACAG+GGG | - | tig0004809:7818-7837 | Msa1341250:intron | 25.0% |
!!! | AAATAAAGAGCCTTTAGAAT+TGG | - | tig0004809:8110-8129 | Msa1341250:intron | 25.0% |
!! | GTTGGGAAGTAAAATTTTAT+TGG | - | tig0004809:8228-8247 | Msa1341250:intron | 25.0% |
!!! | GACCCAATAATATCTTTTTT+TGG | + | tig0004809:8261-8280 | None:intergenic | 25.0% |
! | TTACTAATAACATTACACCA+AGG | + | tig0004809:8708-8727 | None:intergenic | 25.0% |
! | TTGGTGTAATGTTATTAGTA+AGG | - | tig0004809:8707-8726 | Msa1341250:intron | 25.0% |
! | AGTAAATGAATGAAAAAGGT+CGG | + | tig0004809:8858-8877 | None:intergenic | 25.0% |
! | TTGCAGTAAATGAATGAAAA+AGG | + | tig0004809:8862-8881 | None:intergenic | 25.0% |
! | CATCATATTGTAAAAATGAG+GGG | + | tig0004809:9051-9070 | None:intergenic | 25.0% |
!!! | ATTTTGTTTCTTGACTTATC+AGG | - | tig0004809:9372-9391 | Msa1341250:CDS | 25.0% |
!!! | GAGACCTTTTTTCATTTTTT+TGG | + | tig0004809:9987-10006 | None:intergenic | 25.0% |
! | ATATCATCTCAAAAGAAACT+GGG | + | tig0004809:10144-10163 | None:intergenic | 25.0% |
! | AATATCATCTCAAAAGAAAC+TGG | + | tig0004809:10145-10164 | None:intergenic | 25.0% |
! | CTACTTTACTTTCATAGTAT+TGG | + | tig0004809:10472-10491 | None:intergenic | 25.0% |
!!! | CATTCCATTTTTCCTTATTA+GGG | + | tig0004809:10498-10517 | None:intergenic | 25.0% |
!!! | ACATTCCATTTTTCCTTATT+AGG | + | tig0004809:10499-10518 | None:intergenic | 25.0% |
! | AATAAGGAAAAATGGAATGT+TGG | - | tig0004809:10499-10518 | Msa1341250:intron | 25.0% |
! | AATACACTGTTACTAATTGA+AGG | + | tig0004809:11358-11377 | None:intergenic | 25.0% |
! | TAATTACTCCTATTAGCTTG+AGG | + | tig0004809:4340-4359 | None:intergenic | 30.0% |
TGTAAACTTCAGAATCTTCT+AGG | - | tig0004809:4625-4644 | Msa1341250:intron | 30.0% | |
GTAAACTTCAGAATCTTCTA+GGG | - | tig0004809:4626-4645 | Msa1341250:intron | 30.0% | |
AGTTGTAAAGTGAAGATGTT+TGG | - | tig0004809:4728-4747 | Msa1341250:intron | 30.0% | |
GTTGTAAAGTGAAGATGTTT+GGG | - | tig0004809:4729-4748 | Msa1341250:intron | 30.0% | |
TAGAAATTACCTTCCGAATT+TGG | + | tig0004809:4771-4790 | None:intergenic | 30.0% | |
!! | AATGAAGTGTTGCATTAATG+TGG | + | tig0004809:4817-4836 | None:intergenic | 30.0% |
! | TTGTTGTTGTCTTAGATTGA+AGG | - | tig0004809:4845-4864 | Msa1341250:CDS | 30.0% |
! | ATGGAATTTGGAATTCGTTT+GGG | + | tig0004809:4918-4937 | None:intergenic | 30.0% |
! | AATGGAATTTGGAATTCGTT+TGG | + | tig0004809:4919-4938 | None:intergenic | 30.0% |
! | TCAAGTTTTTACCTCATTTC+AGG | - | tig0004809:5022-5041 | Msa1341250:CDS | 30.0% |
! | CAAGTTTTTACCTCATTTCA+GGG | - | tig0004809:5023-5042 | Msa1341250:CDS | 30.0% |
GAGATGTATACATTGAATCT+AGG | + | tig0004809:5203-5222 | None:intergenic | 30.0% | |
TATTGGGAATAAGATCATAG+TGG | - | tig0004809:5374-5393 | Msa1341250:CDS | 30.0% | |
TTAGTGTCAATGTGTAATTG+TGG | + | tig0004809:5481-5500 | None:intergenic | 30.0% | |
!! | TGAATTTTGACACATTTTCG+TGG | - | tig0004809:5572-5591 | Msa1341250:intron | 30.0% |
GGATAATGTTTACCAAACTA+TGG | + | tig0004809:5666-5685 | None:intergenic | 30.0% | |
!! | GAGCTTTTTGTTATGGTAAT+TGG | + | tig0004809:5687-5706 | None:intergenic | 30.0% |
TCGACAATGAGGAATAAAAT+TGG | - | tig0004809:6020-6039 | Msa1341250:CDS | 30.0% | |
! | AGTTGATATTTATGTGTGTC+TGG | - | tig0004809:6112-6131 | Msa1341250:CDS | 30.0% |
TACCTGGTAAAATTATCATC+AGG | + | tig0004809:6159-6178 | None:intergenic | 30.0% | |
! | TGTTGCTCTGATTATCTTTT+TGG | - | tig0004809:6283-6302 | Msa1341250:CDS | 30.0% |
CTACAAACAAAAATTCCTAC+CGG | + | tig0004809:6377-6396 | None:intergenic | 30.0% | |
TGGAAATAGAAATTGCTCTA+GGG | - | tig0004809:6415-6434 | Msa1341250:CDS | 30.0% | |
TGATATAAAGAACAACCACT+AGG | - | tig0004809:6458-6477 | Msa1341250:CDS | 30.0% | |
AGTTAACTAGGTTACAATTG+AGG | - | tig0004809:6568-6587 | Msa1341250:intron | 30.0% | |
! | TTACAAAGCTTTTCATCTAC+TGG | + | tig0004809:6599-6618 | None:intergenic | 30.0% |
! | AGATGAAAAGCTTTGTAAGT+TGG | - | tig0004809:6601-6620 | Msa1341250:intron | 30.0% |
!!! | TCCATACTGATTTTGATACT+TGG | - | tig0004809:6805-6824 | Msa1341250:intron | 30.0% |
TCCAAGTATCAAAATCAGTA+TGG | + | tig0004809:6809-6828 | None:intergenic | 30.0% | |
GAGCTTTACATCATATAACT+AGG | - | tig0004809:6827-6846 | Msa1341250:intron | 30.0% | |
GTAAAGATACAAGACATATG+AGG | + | tig0004809:7287-7306 | None:intergenic | 30.0% | |
TAGTGGTAGAATTCAGTAAA+TGG | - | tig0004809:7312-7331 | Msa1341250:intron | 30.0% | |
ATTCAGTAAATGGATGAAGA+AGG | - | tig0004809:7322-7341 | Msa1341250:intron | 30.0% | |
AAAACTATCGTATTAGCTAC+TGG | - | tig0004809:7350-7369 | Msa1341250:intron | 30.0% | |
AATATGGTTATGTGGAAAGA+GGG | + | tig0004809:7481-7500 | None:intergenic | 30.0% | |
ACTTAATCAATTCAGCATCT+CGG | + | tig0004809:7674-7693 | None:intergenic | 30.0% | |
GGTACTAAATGGTATATTAC+AGG | - | tig0004809:7816-7835 | Msa1341250:intron | 30.0% | |
ACTAAATGGTATATTACAGG+GGG | - | tig0004809:7819-7838 | Msa1341250:intron | 30.0% | |
! | ACCTACTACTTTCTTTCTTT+TGG | - | tig0004809:7904-7923 | Msa1341250:CDS | 30.0% |
ACCAAAAGAAAGAAAGTAGT+AGG | + | tig0004809:7908-7927 | None:intergenic | 30.0% | |
AACTACTACTTTCTTTCTCT+TGG | - | tig0004809:7928-7947 | Msa1341250:CDS | 30.0% | |
! | TGTTGTTATGCTTCATTTTC+TGG | - | tig0004809:7964-7983 | Msa1341250:CDS | 30.0% |
! | GTTGTTATGCTTCATTTTCT+GGG | - | tig0004809:7965-7984 | Msa1341250:CDS | 30.0% |
TGATCTGGCTAAAATTTAGT+TGG | - | tig0004809:8210-8229 | Msa1341250:intron | 30.0% | |
GATCTGGCTAAAATTTAGTT+GGG | - | tig0004809:8211-8230 | Msa1341250:intron | 30.0% | |
ATTGCTTAAACAAAGCCTTA+GGG | - | tig0004809:8288-8307 | Msa1341250:intron | 30.0% | |
TGTAAAAAATGAATGGTCTG+TGG | - | tig0004809:8460-8479 | Msa1341250:intron | 30.0% | |
ACAATAGTCAATAGACATGT+TGG | + | tig0004809:8967-8986 | None:intergenic | 30.0% | |
! | AGTCTCATTTTCATAGTCAT+AGG | + | tig0004809:9093-9112 | None:intergenic | 30.0% |
!! | TTATTTCTAGATGTCTTGCA+TGG | - | tig0004809:9162-9181 | Msa1341250:intron | 30.0% |
AGAGCATAAAGTTAATGTTC+TGG | - | tig0004809:9328-9347 | Msa1341250:intron | 30.0% | |
!! | AATGTTCTGGTTCATTCTTA+TGG | - | tig0004809:9341-9360 | Msa1341250:intron | 30.0% |
GTAATTGGGATCTATAGATT+CGG | + | tig0004809:9608-9627 | None:intergenic | 30.0% | |
!! | TGCTTTAGAATGAGAATACA+CGG | + | tig0004809:9764-9783 | None:intergenic | 30.0% |
!!! | TGCCATGTGTTTTTAAAACA+TGG | - | tig0004809:9813-9832 | Msa1341250:intron | 30.0% |
!!! | CACCATGTTTTAAAAACACA+TGG | + | tig0004809:9818-9837 | None:intergenic | 30.0% |
AAAACACTAGGATATGTACA+GGG | + | tig0004809:9859-9878 | None:intergenic | 30.0% | |
AAAAACACTAGGATATGTAC+AGG | + | tig0004809:9860-9879 | None:intergenic | 30.0% | |
GCATGTATATTCAAACATAG+CGG | + | tig0004809:9883-9902 | None:intergenic | 30.0% | |
!!! | TTTTTTTGGTCATGAGATGT+GGG | + | tig0004809:9973-9992 | None:intergenic | 30.0% |
!!! | ATTTTTTTGGTCATGAGATG+TGG | + | tig0004809:9974-9993 | None:intergenic | 30.0% |
TCCTATTAAAGAAAATACGG+CGG | + | tig0004809:10089-10108 | None:intergenic | 30.0% | |
! | TTAATGTTCTGCGTAACTTT+TGG | - | tig0004809:10233-10252 | Msa1341250:intron | 30.0% |
TAATGTTCATCAGTTTACGA+CGG | + | tig0004809:10298-10317 | None:intergenic | 30.0% | |
TTGTCCTTCAATATTAACCT+TGG | + | tig0004809:10327-10346 | None:intergenic | 30.0% | |
!!! | GTTTTGTTGATTTGATATCC+CGG | + | tig0004809:10360-10379 | None:intergenic | 30.0% |
TTTCCTGAGAATGATAAATC+AGG | - | tig0004809:10422-10441 | Msa1341250:intron | 30.0% | |
ACAGGAAATGGAGAAAAAAT+TGG | - | tig0004809:10595-10614 | Msa1341250:CDS | 30.0% | |
GACAATGTTTGATAAGTTGT+TGG | + | tig0004809:10690-10709 | None:intergenic | 30.0% | |
!! | TGTTTTAGATGATACACAGA+AGG | - | tig0004809:10757-10776 | Msa1341250:intron | 30.0% |
GAGTGCTTCAAATGAATAAT+GGG | + | tig0004809:10792-10811 | None:intergenic | 30.0% | |
! | AGAGTGCTTCAAATGAATAA+TGG | + | tig0004809:10793-10812 | None:intergenic | 30.0% |
! | CTTTTATGCATGGTTATTGT+TGG | - | tig0004809:10817-10836 | Msa1341250:CDS | 30.0% |
!! | GGCTGATAAAATTTTGTTGT+AGG | - | tig0004809:10838-10857 | Msa1341250:CDS | 30.0% |
! | CAGATTGTGTTTGAGTTTAT+TGG | - | tig0004809:10985-11004 | Msa1341250:exon | 30.0% |
TCTGATTAGTGTAGATAATG+AGG | - | tig0004809:11273-11292 | Msa1341250:five_prime_UTR | 30.0% | |
! | TTAGCTTGAGGTGGAAAAAA+TGG | + | tig0004809:4328-4347 | None:intergenic | 35.0% |
! | TTTTTCCACCTCAAGCTAAT+AGG | - | tig0004809:4329-4348 | Msa1341250:three_prime_UTR | 35.0% |
CAAAGCTGTTTGTAGAGTAA+GGG | + | tig0004809:4701-4720 | None:intergenic | 35.0% | |
TCAAAGCTGTTTGTAGAGTA+AGG | + | tig0004809:4702-4721 | None:intergenic | 35.0% | |
AGTTGGAAGATGAGAAAGAA+AGG | + | tig0004809:4965-4984 | None:intergenic | 35.0% | |
!! | TGAGCTACAAGTACTGATAT+TGG | + | tig0004809:5129-5148 | None:intergenic | 35.0% |
AATATCAGTACTTGTAGCTC+AGG | - | tig0004809:5128-5147 | Msa1341250:CDS | 35.0% | |
TGACAACAATACCCAATTCT+CGG | + | tig0004809:5159-5178 | None:intergenic | 35.0% | |
! | TGGGTATTGTTGTCAATTTC+TGG | - | tig0004809:5164-5183 | Msa1341250:CDS | 35.0% |
TATACATTGAATCTAGGAGC+GGG | + | tig0004809:5197-5216 | None:intergenic | 35.0% | |
GTATACATTGAATCTAGGAG+CGG | + | tig0004809:5198-5217 | None:intergenic | 35.0% | |
AATAAGATCATAGTGGTTGG+CGG | - | tig0004809:5381-5400 | Msa1341250:CDS | 35.0% | |
AATTGTGGACGGTTCTATAT+TGG | + | tig0004809:5466-5485 | None:intergenic | 35.0% | |
TGTCAATGTGTAATTGTGGA+CGG | + | tig0004809:5477-5496 | None:intergenic | 35.0% | |
!!! | GTCACATCACAGTTTTAGAA+AGG | + | tig0004809:5514-5533 | None:intergenic | 35.0% |
! | TCTAAAACTGTGATGTGACA+TGG | - | tig0004809:5515-5534 | Msa1341250:intron | 35.0% |
! | TGCTTTTCGTTTTCATTCTC+AGG | - | tig0004809:5546-5565 | Msa1341250:intron | 35.0% |
! | AAGAGGAGAGCTTTTTGTTA+TGG | + | tig0004809:5694-5713 | None:intergenic | 35.0% |
! | TAAGGGTACATTGAAACAAG+AGG | + | tig0004809:5711-5730 | None:intergenic | 35.0% |
AAGGTTAACAAAAGTCAACC+AGG | - | tig0004809:5969-5988 | Msa1341250:intron | 35.0% | |
ACAAAAGTCAACCAGGAATA+TGG | - | tig0004809:5976-5995 | Msa1341250:intron | 35.0% | |
CAAATATGAACTCGACAATG+AGG | - | tig0004809:6009-6028 | Msa1341250:CDS | 35.0% | |
! | TGAGGAATAAAATTGGTGTC+AGG | - | tig0004809:6027-6046 | Msa1341250:CDS | 35.0% |
!! | GAGGAATAAAATTGGTGTCA+GGG | - | tig0004809:6028-6047 | Msa1341250:CDS | 35.0% |
!! | AGGAATAAAATTGGTGTCAG+GGG | - | tig0004809:6029-6048 | Msa1341250:CDS | 35.0% |
! | TGCCTGATGATAATTTTACC+AGG | - | tig0004809:6154-6173 | Msa1341250:CDS | 35.0% |
!!! | TCTTTTTGGTGTTTGCAGTA+TGG | - | tig0004809:6297-6316 | Msa1341250:CDS | 35.0% |
!!! | CTTTTTGGTGTTTGCAGTAT+GGG | - | tig0004809:6298-6317 | Msa1341250:CDS | 35.0% |
GTGGAAATAGAAATTGCTCT+AGG | - | tig0004809:6414-6433 | Msa1341250:CDS | 35.0% | |
TACACTAATACACTTCCTAG+TGG | + | tig0004809:6476-6495 | None:intergenic | 35.0% | |
CCTATCAAGAACAAACTCTT+TGG | + | tig0004809:6862-6881 | None:intergenic | 35.0% | |
! | CCAAAGAGTTTGTTCTTGAT+AGG | - | tig0004809:6859-6878 | Msa1341250:intron | 35.0% |
! | TGATCTACTATATGGATTGC+AGG | - | tig0004809:7119-7138 | Msa1341250:intron | 35.0% |
! | GATCTACTATATGGATTGCA+GGG | - | tig0004809:7120-7139 | Msa1341250:intron | 35.0% |
! | ATCTACTATATGGATTGCAG+GGG | - | tig0004809:7121-7140 | Msa1341250:intron | 35.0% |
! | TTTGAAACGGTAAGTAGTGT+AGG | - | tig0004809:7259-7278 | Msa1341250:CDS | 35.0% |
GTAAATGGATGAAGAAGGAA+TGG | - | tig0004809:7327-7346 | Msa1341250:intron | 35.0% | |
ATGTGGAAAGAGGGAATAAT+AGG | + | tig0004809:7472-7491 | None:intergenic | 35.0% | |
GAATATGGTTATGTGGAAAG+AGG | + | tig0004809:7482-7501 | None:intergenic | 35.0% | |
GTTTATGTAAGCAAAAGGAG+AGG | + | tig0004809:7563-7582 | None:intergenic | 35.0% | |
GGAAGGTTTATGTAAGCAAA+AGG | + | tig0004809:7568-7587 | None:intergenic | 35.0% | |
TTTGCTTACATAAACCTTCC+AGG | - | tig0004809:7568-7587 | Msa1341250:intron | 35.0% | |
! | ATTTGATAGAGCACTAGATC+AGG | + | tig0004809:7624-7643 | None:intergenic | 35.0% |
! | TTTCTTTTCTTCAGATGGCA+TGG | - | tig0004809:7730-7749 | Msa1341250:intron | 35.0% |
CAGCAGTAATAAAGTAGTTC+AGG | + | tig0004809:8009-8028 | None:intergenic | 35.0% | |
!!! | GGGTTTTGAATTCTGCTTTA+AGG | - | tig0004809:8166-8185 | Msa1341250:intron | 35.0% |
!!! | GCTTTAAGGTCTTTTTTCCA+TGG | - | tig0004809:8180-8199 | Msa1341250:intron | 35.0% |
GATTGCTTAAACAAAGCCTT+AGG | - | tig0004809:8287-8306 | Msa1341250:intron | 35.0% | |
TTGCTTAAACAAAGCCTTAG+GGG | - | tig0004809:8289-8308 | Msa1341250:intron | 35.0% | |
!! | TTGTTGGTAGTGATAGAAGA+TGG | + | tig0004809:8500-8519 | None:intergenic | 35.0% |
ATCTTCTATCACTACCAACA+AGG | - | tig0004809:8499-8518 | Msa1341250:CDS | 35.0% | |
ACCAAAATCTCAAGTTCAGA+AGG | + | tig0004809:8919-8938 | None:intergenic | 35.0% | |
!! | GTGCTGCTTAATAAATGAAC+TGG | + | tig0004809:9126-9145 | None:intergenic | 35.0% |
AAAGACTACCTTGTTGCATT+TGG | - | tig0004809:9268-9287 | Msa1341250:intron | 35.0% | |
AAGACTACCTTGTTGCATTT+GGG | - | tig0004809:9269-9288 | Msa1341250:intron | 35.0% | |
CTTTGTCAAACCTGATTAGA+CGG | + | tig0004809:9310-9329 | None:intergenic | 35.0% | |
! | TTGTTTCTTGACTTATCAGG+TGG | - | tig0004809:9375-9394 | Msa1341250:CDS | 35.0% |
!! | TTTTCAAGCAGTATAGATGC+AGG | + | tig0004809:9463-9482 | None:intergenic | 35.0% |
ATACAATGCAGATGTCAAGA+TGG | - | tig0004809:9675-9694 | Msa1341250:intron | 35.0% | |
GAAAAAAGGTAGTTTACCTG+AGG | + | tig0004809:9727-9746 | None:intergenic | 35.0% | |
! | AAAACATGGTGTCAAACCTT+AGG | - | tig0004809:9827-9846 | Msa1341250:intron | 35.0% |
! | AAACATAGCGGAAAAACACT+AGG | + | tig0004809:9871-9890 | None:intergenic | 35.0% |
!!! | TTTTTTGGTCATGAGATGTG+GGG | + | tig0004809:9972-9991 | None:intergenic | 35.0% |
CACACACATATGTTATTGTC+TGG | - | tig0004809:10032-10051 | Msa1341250:intron | 35.0% | |
TGTCTGGATTTAACTGCATT+TGG | - | tig0004809:10048-10067 | Msa1341250:intron | 35.0% | |
GTCTGGATTTAACTGCATTT+GGG | - | tig0004809:10049-10068 | Msa1341250:intron | 35.0% | |
! | GATTTAACTGCATTTGGGTT+GGG | - | tig0004809:10054-10073 | Msa1341250:intron | 35.0% |
ATTAAAGAAAATACGGCGGA+GGG | + | tig0004809:10085-10104 | None:intergenic | 35.0% | |
TATTAAAGAAAATACGGCGG+AGG | + | tig0004809:10086-10105 | None:intergenic | 35.0% | |
! | TCCGCCGTATTTTCTTTAAT+AGG | - | tig0004809:10085-10104 | Msa1341250:CDS | 35.0% |
CGTAAACTGATGAACATTAG+TGG | - | tig0004809:10299-10318 | Msa1341250:CDS | 35.0% | |
GTGCATCACTTTCAAATACT+TGG | + | tig0004809:10382-10401 | None:intergenic | 35.0% | |
GATCCTGATTTATCATTCTC+AGG | + | tig0004809:10428-10447 | None:intergenic | 35.0% | |
AAGGAAAAATGGAATGTTGG+AGG | - | tig0004809:10502-10521 | Msa1341250:intron | 35.0% | |
AGGAAAAATGGAATGTTGGA+GGG | - | tig0004809:10503-10522 | Msa1341250:intron | 35.0% | |
TTCCATTTCCTTCAATGCAT+CGG | + | tig0004809:10621-10640 | None:intergenic | 35.0% | |
! | TATCATCTAAAACAGCCTTG+AGG | + | tig0004809:10751-10770 | None:intergenic | 35.0% |
!! | ATTGGTGTTATTTCCCAAAC+TGG | - | tig0004809:11003-11022 | Msa1341250:five_prime_UTR | 35.0% |
AACCAGTTCAATAAGTCGAA+AGG | + | tig0004809:11075-11094 | None:intergenic | 35.0% | |
CAAACAGAGATTGCAATCTA+TGG | - | tig0004809:11136-11155 | Msa1341250:intron | 35.0% | |
GATTAGTGTAGATAATGAGG+AGG | - | tig0004809:11276-11295 | Msa1341250:five_prime_UTR | 35.0% | |
GAAGGATAGATAGAACTAAG+AGG | + | tig0004809:11340-11359 | None:intergenic | 35.0% | |
ATTCGAACGTTACGTTAGGT+AGG | + | tig0004809:4260-4279 | None:intergenic | 40.0% | |
!! | ATCGATTCGAACGTTACGTT+AGG | + | tig0004809:4264-4283 | None:intergenic | 40.0% |
!! | AAAAATGGTGATGGTACTGC+TGG | + | tig0004809:4313-4332 | None:intergenic | 40.0% |
TGAGGTGGAAAAAATGGTGA+TGG | + | tig0004809:4322-4341 | None:intergenic | 40.0% | |
! | TTACTCCTATTAGCTTGAGG+TGG | + | tig0004809:4337-4356 | None:intergenic | 40.0% |
AGAGTAATTAAATGTGGGGC+AGG | + | tig0004809:4440-4459 | None:intergenic | 40.0% | |
!! | GAATAGAAGTACTGCTGCTT+CGG | - | tig0004809:4515-4534 | Msa1341250:exon | 40.0% |
CTAGAAGTCCAGTTACTGTT+AGG | - | tig0004809:4889-4908 | Msa1341250:intron | 40.0% | |
TTTACCTCATTTCAGGGAGA+AGG | - | tig0004809:5029-5048 | Msa1341250:CDS | 40.0% | |
CTTATTCCCAATAACAGCAG+CGG | + | tig0004809:5367-5386 | None:intergenic | 40.0% | |
GGGAATAAGATCATAGTGGT+TGG | - | tig0004809:5378-5397 | Msa1341250:CDS | 40.0% | |
TGGATTGTTAGATGATGTGC+AGG | - | tig0004809:5416-5435 | Msa1341250:CDS | 40.0% | |
TGTTAGATGATGTGCAGGTA+TGG | - | tig0004809:5421-5440 | Msa1341250:CDS | 40.0% | |
TGTGATGTGACATGGATTCT+TGG | - | tig0004809:5523-5542 | Msa1341250:intron | 40.0% | |
! | GTAAAGCTTTGATGTTGCCA+TGG | + | tig0004809:5599-5618 | None:intergenic | 40.0% |
TTGCATGCAGGAATCTTTAG+GGG | + | tig0004809:5640-5659 | None:intergenic | 40.0% | |
CTTGCATGCAGGAATCTTTA+GGG | + | tig0004809:5641-5660 | None:intergenic | 40.0% | |
CTAAAGATTCCTGCATGCAA+GGG | - | tig0004809:5640-5659 | Msa1341250:intron | 40.0% | |
TGTCAAAGACAGTGCAACAA+TGG | + | tig0004809:5735-5754 | None:intergenic | 40.0% | |
GCAACTTTGAACCATATTCC+TGG | + | tig0004809:5990-6009 | None:intergenic | 40.0% | |
! | CCTTTTTCCCATAAGATACC+TGG | + | tig0004809:6175-6194 | None:intergenic | 40.0% |
CCAGGTATCTTATGGGAAAA+AGG | - | tig0004809:6172-6191 | Msa1341250:CDS | 40.0% | |
!! | AAAAAGGCACTTCTCATTGG+AGG | - | tig0004809:6188-6207 | Msa1341250:CDS | 40.0% |
!! | AAAAGGCACTTCTCATTGGA+GGG | - | tig0004809:6189-6208 | Msa1341250:CDS | 40.0% |
! | ACCTGAAATTCTGTCACTTC+CGG | + | tig0004809:6225-6244 | None:intergenic | 40.0% |
TTGATACAGAAAGTGAGTGC+TGG | - | tig0004809:6324-6343 | Msa1341250:intron | 40.0% | |
! | TTGATCTCAAGTCGTTGACT+TGG | - | tig0004809:6981-7000 | Msa1341250:intron | 40.0% |
ATCACTTACGTGTAGTGAAG+TGG | + | tig0004809:7010-7029 | None:intergenic | 40.0% | |
ACATGGTTCAATCTTGGAGA+AGG | + | tig0004809:7154-7173 | None:intergenic | 40.0% | |
GTTGCTACATGGTTCAATCT+TGG | + | tig0004809:7160-7179 | None:intergenic | 40.0% | |
CATCATAGAGAGTTGCTACA+TGG | + | tig0004809:7171-7190 | None:intergenic | 40.0% | |
TGTTTATGGGAGGGAGAATA+TGG | + | tig0004809:7497-7516 | None:intergenic | 40.0% | |
! | CTGTCAAGTTGTTTATGGGA+GGG | + | tig0004809:7506-7525 | None:intergenic | 40.0% |
! | CGAGCTGTCAAGTTGTTTAT+GGG | + | tig0004809:7510-7529 | None:intergenic | 40.0% |
CCATAAACAACTTGACAGCT+CGG | - | tig0004809:7508-7527 | Msa1341250:intron | 40.0% | |
TAAGCAAAAGGAGAGGAACT+GGG | + | tig0004809:7556-7575 | None:intergenic | 40.0% | |
AGCATCTCGGACAATTCAAA+AGG | + | tig0004809:7661-7680 | None:intergenic | 40.0% | |
! | GCGTTTTGTGTGGTACTAAA+TGG | - | tig0004809:7805-7824 | Msa1341250:intron | 40.0% |
AAATGGTATATTACAGGGGG+AGG | - | tig0004809:7822-7841 | Msa1341250:intron | 40.0% | |
TTCCATGGCACAAAATGATC+TGG | - | tig0004809:8195-8214 | Msa1341250:intron | 40.0% | |
!! | TTGGTAGTGATAGAAGATGG+AGG | + | tig0004809:8497-8516 | None:intergenic | 40.0% |
AAAAGGAATGAGCACCTTGT+TGG | + | tig0004809:8516-8535 | None:intergenic | 40.0% | |
AAATAGCACTAGAGCCAAGT+AGG | + | tig0004809:8546-8565 | None:intergenic | 40.0% | |
TTAATAGACGCTCTCATCAG+AGG | - | tig0004809:8606-8625 | Msa1341250:intron | 40.0% | |
!! | GAGAGGCTGTTTCTAAGATT+TGG | + | tig0004809:8765-8784 | None:intergenic | 40.0% |
TTAGTCTCCCTGATTCCATT+TGG | - | tig0004809:8812-8831 | Msa1341250:CDS | 40.0% | |
! | GCCTTCTGAACTTGAGATTT+TGG | - | tig0004809:8915-8934 | Msa1341250:intron | 40.0% |
AGACTACCTTGTTGCATTTG+GGG | - | tig0004809:9270-9289 | Msa1341250:intron | 40.0% | |
!!! | CTGATTAGACGGCTCTTTTT+TGG | + | tig0004809:9299-9318 | None:intergenic | 40.0% |
CAAAAAAGAGCCGTCTAATC+AGG | - | tig0004809:9297-9316 | Msa1341250:intron | 40.0% | |
!! | GTTCTGGTTCATTCTTATGG+AGG | - | tig0004809:9344-9363 | Msa1341250:intron | 40.0% |
ATAGATGCAGGACCTTTACT+GGG | + | tig0004809:9451-9470 | None:intergenic | 40.0% | |
TATAGATGCAGGACCTTTAC+TGG | + | tig0004809:9452-9471 | None:intergenic | 40.0% | |
AACAGAGTCAACTAAGCGTT+GGG | + | tig0004809:9530-9549 | None:intergenic | 40.0% | |
TTAGCATCTGCAGTTGAACA+TGG | - | tig0004809:9562-9581 | Msa1341250:intron | 40.0% | |
GCGATCAAATTGCTTACGAA+GGG | + | tig0004809:9647-9666 | None:intergenic | 40.0% | |
AAGATGGACAAGAACTCAGA+TGG | - | tig0004809:9691-9710 | Msa1341250:intron | 40.0% | |
AGATGGAAGTTCTTTACCTC+AGG | - | tig0004809:9708-9727 | Msa1341250:intron | 40.0% | |
!! | TCTCATTCTAAAGCACCTGT+TGG | - | tig0004809:9769-9788 | Msa1341250:intron | 40.0% |
! | CCTAATGCTTTAAGTCCAAC+AGG | + | tig0004809:9787-9806 | None:intergenic | 40.0% |
! | CCTGTTGGACTTAAAGCATT+AGG | - | tig0004809:9784-9803 | Msa1341250:intron | 40.0% |
ATGTACAGGGTAAATGCCTA+AGG | + | tig0004809:9846-9865 | None:intergenic | 40.0% | |
!! | TTTTTGGTCATGAGATGTGG+GGG | + | tig0004809:9971-9990 | None:intergenic | 40.0% |
GGATTTAACTGCATTTGGGT+TGG | - | tig0004809:10053-10072 | Msa1341250:intron | 40.0% | |
!! | CGTAACTTTTGGTGCATTTC+AGG | - | tig0004809:10244-10263 | Msa1341250:intron | 40.0% |
!! | AACTTTTGGTGCATTTCAGG+TGG | - | tig0004809:10247-10266 | Msa1341250:intron | 40.0% |
GGAGCCAAGGTTAATATTGA+AGG | - | tig0004809:10320-10339 | Msa1341250:CDS | 40.0% | |
AGTGATGCACTAGAAAGTGA+AGG | - | tig0004809:10392-10411 | Msa1341250:intron | 40.0% | |
GTAAAGTAGCAGCCCTAATA+AGG | - | tig0004809:10483-10502 | Msa1341250:intron | 40.0% | |
GCAGCCCTAATAAGGAAAAA+TGG | - | tig0004809:10491-10510 | Msa1341250:intron | 40.0% | |
ATCTGTCCATAAAAGCAGAC+AGG | - | tig0004809:10577-10596 | Msa1341250:CDS | 40.0% | |
!! | CCATTTCCTGTCTGCTTTTA+TGG | + | tig0004809:10586-10605 | None:intergenic | 40.0% |
CCATAAAAGCAGACAGGAAA+TGG | - | tig0004809:10583-10602 | Msa1341250:CDS | 40.0% | |
AAAATTGGCCGATGCATTGA+AGG | - | tig0004809:10610-10629 | Msa1341250:CDS | 40.0% | |
! | TAAGTTGTTGGCCTCTTCTT+GGG | + | tig0004809:10678-10697 | None:intergenic | 40.0% |
! | ATAAGTTGTTGGCCTCTTCT+TGG | + | tig0004809:10679-10698 | None:intergenic | 40.0% |
! | ATCTAAAACAGCCTTGAGGA+AGG | + | tig0004809:10747-10766 | None:intergenic | 40.0% |
! | CACTCTGATGCTTTTATGCA+TGG | - | tig0004809:10807-10826 | Msa1341250:CDS | 40.0% |
AACCTAACTCAGACCAGTTT+GGG | + | tig0004809:11019-11038 | None:intergenic | 40.0% | |
CAGTTCAATAAGTCGAAAGG+AGG | + | tig0004809:11072-11091 | None:intergenic | 40.0% | |
CTCCTTTCGACTTATTGAAC+TGG | - | tig0004809:11070-11089 | Msa1341250:five_prime_UTR | 40.0% | |
ACTGGTTGTCATCTCATTGT+TGG | - | tig0004809:11088-11107 | Msa1341250:intron | 40.0% | |
CGTGCAGTGAAGTAGATAAT+TGG | - | tig0004809:11196-11215 | Msa1341250:five_prime_UTR | 40.0% | |
CAGAAAAACTAGCAACGAAG+TGG | + | tig0004809:11231-11250 | None:intergenic | 40.0% | |
ACGTTAGGTAGGTAGCAAGA+TGG | + | tig0004809:4249-4268 | None:intergenic | 45.0% | |
CTGGATAAACAGAGACAGAG+AGG | + | tig0004809:4288-4307 | None:intergenic | 45.0% | |
CTCTCTGTCTCTGTTTATCC+AGG | - | tig0004809:4286-4305 | Msa1341250:three_prime_UTR | 45.0% | |
TCTCGTAGACGCACCAAATT+CGG | - | tig0004809:4755-4774 | Msa1341250:intron | 45.0% | |
AAGGTTCAGCAGCTTTCTGA+TGG | - | tig0004809:4864-4883 | Msa1341250:intron | 45.0% | |
TTGGGATGCCTAACAGTAAC+TGG | + | tig0004809:4900-4919 | None:intergenic | 45.0% | |
TTCTCCTTCTCCCTGAAATG+AGG | + | tig0004809:5036-5055 | None:intergenic | 45.0% | |
AGGGAGAAGGAGAAGAAGAT+GGG | - | tig0004809:5042-5061 | Msa1341250:CDS | 45.0% | |
ATCAGTACTTGTAGCTCAGG+CGG | - | tig0004809:5131-5150 | Msa1341250:CDS | 45.0% | |
! | TGACACATTTTCGTGGACCA+TGG | - | tig0004809:5579-5598 | Msa1341250:intron | 45.0% |
! | ATCTTTAGGGGCAGACTACT+GGG | + | tig0004809:5628-5647 | None:intergenic | 45.0% |
! | AATCTTTAGGGGCAGACTAC+TGG | + | tig0004809:5629-5648 | None:intergenic | 45.0% |
CCTTGCATGCAGGAATCTTT+AGG | + | tig0004809:5642-5661 | None:intergenic | 45.0% | |
CCTAAAGATTCCTGCATGCA+AGG | - | tig0004809:5639-5658 | Msa1341250:intron | 45.0% | |
GACAGTGCAACAATGGCTAA+GGG | + | tig0004809:5728-5747 | None:intergenic | 45.0% | |
AGACAGTGCAACAATGGCTA+AGG | + | tig0004809:5729-5748 | None:intergenic | 45.0% | |
GGGATTCTGTAATAGCGCAA+AGG | - | tig0004809:5950-5969 | Msa1341250:intron | 45.0% | |
!! | GGGAAAAAGGCACTTCTCAT+TGG | - | tig0004809:6185-6204 | Msa1341250:CDS | 45.0% |
ATTGGAGGGAAAACAGATCC+CGG | - | tig0004809:6203-6222 | Msa1341250:CDS | 45.0% | |
! | CCTGAAATTCTGTCACTTCC+GGG | + | tig0004809:6224-6243 | None:intergenic | 45.0% |
TCTTGATAGGTTGCTCGCAA+TGG | - | tig0004809:6872-6891 | Msa1341250:intron | 45.0% | |
CAATGGTCACAGTGTTGTCA+GGG | - | tig0004809:6889-6908 | Msa1341250:intron | 45.0% | |
TTGGGGGTGAAGATGCAAAA+AGG | - | tig0004809:6933-6952 | Msa1341250:intron | 45.0% | |
GGAGGGAGAATATGGTTATG+TGG | + | tig0004809:7489-7508 | None:intergenic | 45.0% | |
! | GCTGTCAAGTTGTTTATGGG+AGG | + | tig0004809:7507-7526 | None:intergenic | 45.0% |
! | CCGAGCTGTCAAGTTGTTTA+TGG | + | tig0004809:7511-7530 | None:intergenic | 45.0% |
TGGGGAAGACAAGGAATAAG+GGG | + | tig0004809:7537-7556 | None:intergenic | 45.0% | |
CTGGGGAAGACAAGGAATAA+GGG | + | tig0004809:7538-7557 | None:intergenic | 45.0% | |
ACTGGGGAAGACAAGGAATA+AGG | + | tig0004809:7539-7558 | None:intergenic | 45.0% | |
AAGCAAAAGGAGAGGAACTG+GGG | + | tig0004809:7555-7574 | None:intergenic | 45.0% | |
GTAAGCAAAAGGAGAGGAAC+TGG | + | tig0004809:7557-7576 | None:intergenic | 45.0% | |
TACATAAACCTTCCAGGCTC+TGG | - | tig0004809:7574-7593 | Msa1341250:intron | 45.0% | |
ACATAAACCTTCCAGGCTCT+GGG | - | tig0004809:7575-7594 | Msa1341250:intron | 45.0% | |
ATGTGGGTCTGAACTATGCA+AGG | + | tig0004809:7601-7620 | None:intergenic | 45.0% | |
! | AGAGCACTAGATCAGGATGT+GGG | + | tig0004809:7617-7636 | None:intergenic | 45.0% |
! | TAGAGCACTAGATCAGGATG+TGG | + | tig0004809:7618-7637 | None:intergenic | 45.0% |
GATGGCATGGTCAAGAGTAA+AGG | - | tig0004809:7743-7762 | Msa1341250:intron | 45.0% | |
TGGTCAAGAGTAAAGGTTCG+AGG | - | tig0004809:7750-7769 | Msa1341250:intron | 45.0% | |
! | AGCCAGATCATTTTGTGCCA+TGG | + | tig0004809:8200-8219 | None:intergenic | 45.0% |
AATGCTAACAAGTGCCCCTA+AGG | + | tig0004809:8306-8325 | None:intergenic | 45.0% | |
! | TCCTTTTCATGCCACCTACT+TGG | - | tig0004809:8529-8548 | Msa1341250:CDS | 45.0% |
ACTACAATAGAGGCAAGCCT+TGG | - | tig0004809:8688-8707 | Msa1341250:intron | 45.0% | |
ACATGTGATCACCAGGTCTA+AGG | + | tig0004809:8742-8761 | None:intergenic | 45.0% | |
GATTTGGACATGTGATCACC+AGG | + | tig0004809:8749-8768 | None:intergenic | 45.0% | |
CCTTACTATTGCAAGCAGAG+AGG | + | tig0004809:8782-8801 | None:intergenic | 45.0% | |
CCTCTCTGCTTGCAATAGTA+AGG | - | tig0004809:8779-8798 | Msa1341250:CDS | 45.0% | |
TCTCCCTGATTCCATTTGGT+GGG | - | tig0004809:8816-8835 | Msa1341250:CDS | 45.0% | |
AAGGTCGGTAAAGTGCACAA+CGG | + | tig0004809:8843-8862 | None:intergenic | 45.0% | |
!! | CTTGGTGCTTGTGCAATACA+AGG | - | tig0004809:9243-9262 | Msa1341250:intron | 45.0% |
GACTACCTTGTTGCATTTGG+GGG | - | tig0004809:9271-9290 | Msa1341250:intron | 45.0% | |
! | GACTTATCAGGTGGAAGTGT+TGG | - | tig0004809:9384-9403 | Msa1341250:CDS | 45.0% |
!! | TCAGGTGGAAGTGTTGGAAT+TGG | - | tig0004809:9390-9409 | Msa1341250:CDS | 45.0% |
AGACGTTCAACTCCCAGTAA+AGG | - | tig0004809:9436-9455 | Msa1341250:CDS | 45.0% | |
AAGCTGAGAGGCTAATCTAG+TGG | + | tig0004809:9497-9516 | None:intergenic | 45.0% | |
GGAACAGTGATTAAGCTGAG+AGG | + | tig0004809:9509-9528 | None:intergenic | 45.0% | |
CAACAGAGTCAACTAAGCGT+TGG | + | tig0004809:9531-9550 | None:intergenic | 45.0% | |
TCTGCAGTTGAACATGGTTC+TGG | - | tig0004809:9568-9587 | Msa1341250:intron | 45.0% | |
!! | CAGTTGAACATGGTTCTGGA+AGG | - | tig0004809:9572-9591 | Msa1341250:intron | 45.0% |
ACATTGCTTGGGGGGTAATT+GGG | + | tig0004809:9622-9641 | None:intergenic | 45.0% | |
TACGAAGGGAGACATTGCTT+GGG | + | tig0004809:9633-9652 | None:intergenic | 45.0% | |
TTACGAAGGGAGACATTGCT+TGG | + | tig0004809:9634-9653 | None:intergenic | 45.0% | |
CGCGATCAAATTGCTTACGA+AGG | + | tig0004809:9648-9667 | None:intergenic | 45.0% | |
! | TTTTGGTCATGAGATGTGGG+GGG | + | tig0004809:9970-9989 | None:intergenic | 45.0% |
TGTGTGTGTATTTGCCTGTG+TGG | + | tig0004809:10018-10037 | None:intergenic | 45.0% | |
GATGAACATTAGTGGAGCCA+AGG | - | tig0004809:10307-10326 | Msa1341250:CDS | 45.0% | |
! | GAAGGACAAGTGTTGTTGTC+CGG | - | tig0004809:10338-10357 | Msa1341250:CDS | 45.0% |
! | AAGGACAAGTGTTGTTGTCC+GGG | - | tig0004809:10339-10358 | Msa1341250:CDS | 45.0% |
TTGTCCACTCTGACAACGTT+CGG | - | tig0004809:10705-10724 | Msa1341250:intron | 45.0% | |
TTATTGCAGGGGAAAGAGCT+AGG | - | tig0004809:10882-10901 | Msa1341250:intron | 45.0% | |
TATTGCAGGGGAAAGAGCTA+GGG | - | tig0004809:10883-10902 | Msa1341250:intron | 45.0% | |
! | TTCCCAAACTGGTCTGAGTT+AGG | - | tig0004809:11014-11033 | Msa1341250:five_prime_UTR | 45.0% |
GAACCTAACTCAGACCAGTT+TGG | + | tig0004809:11020-11039 | None:intergenic | 45.0% | |
ATCGAACTTCTACTACACCC+AGG | - | tig0004809:11162-11181 | Msa1341250:intron | 45.0% | |
TGCACGTGAAATGGTTTCCT+GGG | + | tig0004809:11182-11201 | None:intergenic | 45.0% | |
CTACTTCACTGCACGTGAAA+TGG | + | tig0004809:11191-11210 | None:intergenic | 45.0% | |
CTGTCTATTAACGTGAGCTG+AGG | - | tig0004809:11447-11466 | Msa1341250:five_prime_UTR | 45.0% | |
TCTATTAACGTGAGCTGAGG+TGG | - | tig0004809:11450-11469 | Msa1341250:five_prime_UTR | 45.0% | |
CTGAAGCAAGCAAGCAAGCA+AGG | + | tig0004809:4496-4515 | None:intergenic | 50.0% | |
GTAGACGCACCAAATTCGGA+AGG | - | tig0004809:4759-4778 | Msa1341250:intron | 50.0% | |
CAGGGAGAAGGAGAAGAAGA+TGG | - | tig0004809:5041-5060 | Msa1341250:CDS | 50.0% | |
GGGAGAAGGAGAAGAAGATG+GGG | - | tig0004809:5043-5062 | Msa1341250:CDS | 50.0% | |
GAAGATGGGGATGCAGTTAC+CGG | - | tig0004809:5056-5075 | Msa1341250:CDS | 50.0% | |
ATGAGAATGGCCACTTGAGC+CGG | + | tig0004809:5078-5097 | None:intergenic | 50.0% | |
TAGCATGCCGCTGCTGTTAT+TGG | - | tig0004809:5357-5376 | Msa1341250:CDS | 50.0% | |
AGCATGCCGCTGCTGTTATT+GGG | - | tig0004809:5358-5377 | Msa1341250:CDS | 50.0% | |
AAACTATGGCCCTTGCATGC+AGG | + | tig0004809:5652-5671 | None:intergenic | 50.0% | |
TGCATGCAAGGGCCATAGTT+TGG | - | tig0004809:5651-5670 | Msa1341250:intron | 50.0% | |
CCCGGAAGTGACAGAATTTC+AGG | - | tig0004809:6221-6240 | Msa1341250:CDS | 50.0% | |
!! | AAGTGAGTGCTGGTCACTCA+TGG | - | tig0004809:6334-6353 | Msa1341250:intron | 50.0% |
TGGTCACTCATGGAGGCAAA+GGG | - | tig0004809:6344-6363 | Msa1341250:intron | 50.0% | |
GCAATGGTCACAGTGTTGTC+AGG | - | tig0004809:6888-6907 | Msa1341250:intron | 50.0% | |
GGGGTGAAGATGCAAAAAGG+AGG | - | tig0004809:6936-6955 | Msa1341250:intron | 50.0% | |
! | CTTGACTCGTGAAGAAGCTC+AGG | + | tig0004809:7388-7407 | None:intergenic | 50.0% |
TTCCATCCATCACCTAGAGC+TGG | - | tig0004809:7774-7793 | Msa1341250:intron | 50.0% | |
!! | AACCAGCTCTAGGTGATGGA+TGG | + | tig0004809:7779-7798 | None:intergenic | 50.0% |
!! | CAACAACCAGCTCTAGGTGA+TGG | + | tig0004809:7783-7802 | None:intergenic | 50.0% |
TCACCTAGAGCTGGTTGTTG+TGG | - | tig0004809:7783-7802 | Msa1341250:intron | 50.0% | |
! | GGTTGTTGTGGCGTTTTGTG+TGG | - | tig0004809:7795-7814 | Msa1341250:intron | 50.0% |
GTATTCCCACCTCATTTCCC+AGG | - | tig0004809:8410-8429 | Msa1341250:intron | 50.0% | |
CATGTCCTGGGAAATGAGGT+GGG | + | tig0004809:8418-8437 | None:intergenic | 50.0% | |
TCTCCATGTCCTGGGAAATG+AGG | + | tig0004809:8422-8441 | None:intergenic | 50.0% | |
TCAGAGTCTCTCCATGTCCT+GGG | + | tig0004809:8430-8449 | None:intergenic | 50.0% | |
ATCAGAGTCTCTCCATGTCC+TGG | + | tig0004809:8431-8450 | None:intergenic | 50.0% | |
GCCAAGTAGGTGGCATGAAA+AGG | + | tig0004809:8533-8552 | None:intergenic | 50.0% | |
TAGCACTAGAGCCAAGTAGG+TGG | + | tig0004809:8543-8562 | None:intergenic | 50.0% | |
TAGACGCTCTCATCAGAGGA+TGG | - | tig0004809:8610-8629 | Msa1341250:intron | 50.0% | |
! | GGTTGTTGTTGCCTTAGACC+TGG | - | tig0004809:8728-8747 | Msa1341250:CDS | 50.0% |
GTCTCCCTGATTCCATTTGG+TGG | - | tig0004809:8815-8834 | Msa1341250:CDS | 50.0% | |
GGTCCCACCAAATGGAATCA+GGG | + | tig0004809:8822-8841 | None:intergenic | 50.0% | |
TGGATCCCCCAAATGCAACA+AGG | + | tig0004809:9279-9298 | None:intergenic | 50.0% | |
GACATTGCTTGGGGGGTAAT+TGG | + | tig0004809:9623-9642 | None:intergenic | 50.0% | |
ACGAAGGGAGACATTGCTTG+GGG | + | tig0004809:9632-9651 | None:intergenic | 50.0% | |
TGGAATGTTGGAGGGTCAAC+TGG | - | tig0004809:10511-10530 | Msa1341250:intron | 50.0% | |
AGCAGAGAAGCTGCAGAGAA+AGG | - | tig0004809:10548-10567 | Msa1341250:CDS | 50.0% | |
GGCCGATGCATTGAAGGAAA+TGG | - | tig0004809:10616-10635 | Msa1341250:CDS | 50.0% | |
TTACTGCGAGAGAAGCTAGC+CGG | - | tig0004809:10641-10660 | Msa1341250:CDS | 50.0% | |
TTCTTGGGCCAACTCTAGAC+CGG | + | tig0004809:10663-10682 | None:intergenic | 50.0% | |
! | TCTAGAGTTGGCCCAAGAAG+AGG | - | tig0004809:10664-10683 | Msa1341250:CDS | 50.0% |
TCGACACGAGGAGTTATTGC+AGG | - | tig0004809:10869-10888 | Msa1341250:intron | 50.0% | |
CGACACGAGGAGTTATTGCA+GGG | - | tig0004809:10870-10889 | Msa1341250:intron | 50.0% | |
GACACGAGGAGTTATTGCAG+GGG | - | tig0004809:10871-10890 | Msa1341250:intron | 50.0% | |
! | AGCTAGGGCATTCCAACTAC+AGG | - | tig0004809:10898-10917 | Msa1341250:intron | 50.0% |
GGGCATTCCAACTACAGGTA+CGG | - | tig0004809:10903-10922 | Msa1341250:intron | 50.0% | |
GATGTAGCCGTACCTGTAGT+TGG | + | tig0004809:10913-10932 | None:intergenic | 50.0% | |
CTGCACGTGAAATGGTTTCC+TGG | + | tig0004809:11183-11202 | None:intergenic | 50.0% | |
! | ACTGCTGCTTCGGTTCAAGC+TGG | - | tig0004809:4525-4544 | Msa1341250:CDS | 55.0% |
! | CTGCTGCTTCGGTTCAAGCT+GGG | - | tig0004809:4526-4545 | Msa1341250:CDS | 55.0% |
!! | GATGCAGTTACCGGCTCAAG+TGG | - | tig0004809:5065-5084 | Msa1341250:CDS | 55.0% |
CTCAGGCGGTTCCGAGAATT+GGG | - | tig0004809:5145-5164 | Msa1341250:CDS | 55.0% | |
!! | TGAGTGCTGGTCACTCATGG+AGG | - | tig0004809:6337-6356 | Msa1341250:intron | 55.0% |
CTGGTCACTCATGGAGGCAA+AGG | - | tig0004809:6343-6362 | Msa1341250:intron | 55.0% | |
GGAGGCAAAGGGAGACATAC+CGG | - | tig0004809:6355-6374 | Msa1341250:intron | 55.0% | |
GCAAAGGGAGACATACCGGT+AGG | - | tig0004809:6359-6378 | Msa1341250:intron | 55.0% | |
AGCTGCGCTACTTCTTAGCG+TGG | - | tig0004809:6395-6414 | Msa1341250:intron | 55.0% | |
GAGAGGAACTGGGGAAGACA+AGG | + | tig0004809:7546-7565 | None:intergenic | 55.0% | |
ACGCCACAACAACCAGCTCT+AGG | + | tig0004809:7789-7808 | None:intergenic | 55.0% | |
CCATGTCCTGGGAAATGAGG+TGG | + | tig0004809:8419-8438 | None:intergenic | 55.0% | |
CCACCTCATTTCCCAGGACA+TGG | - | tig0004809:8416-8435 | Msa1341250:intron | 55.0% | |
CGGTCCCACCAAATGGAATC+AGG | + | tig0004809:8823-8842 | None:intergenic | 55.0% | |
TGCACAACGGTCCCACCAAA+TGG | + | tig0004809:8830-8849 | None:intergenic | 55.0% | |
CAAGCACCAAGCTGAAACCC+TGG | + | tig0004809:9234-9253 | None:intergenic | 55.0% | |
GAAGGGAGACATTGCTTGGG+GGG | + | tig0004809:9630-9649 | None:intergenic | 55.0% | |
CGAAGGGAGACATTGCTTGG+GGG | + | tig0004809:9631-9650 | None:intergenic | 55.0% | |
GATGTGGGGGGTAACAAGAC+AGG | + | tig0004809:9958-9977 | None:intergenic | 55.0% | |
GGTCTCTCTCTAGTCCACAC+AGG | - | tig0004809:10001-10020 | Msa1341250:intron | 55.0% | |
TGCAGCTTCTCTGCTTGCCA+TGG | + | tig0004809:10543-10562 | None:intergenic | 55.0% | |
! | GAAGCTAGCCGGTCTAGAGT+TGG | - | tig0004809:10652-10671 | Msa1341250:CDS | 55.0% |
TAGGAGTTGCACTCGACACG+AGG | - | tig0004809:10857-10876 | Msa1341250:intron | 55.0% | |
! | GGTGATGGTACTGCTGGTCC+TGG | + | tig0004809:4307-4326 | None:intergenic | 60.0% |
GCTCAGGCGGTTCCGAGAAT+TGG | - | tig0004809:5144-5163 | Msa1341250:CDS | 60.0% | |
GTTGGCGGTGAGTCTGCTAC+TGG | - | tig0004809:5396-5415 | Msa1341250:CDS | 60.0% | |
ACTATGCAAGGCCCAGAGCC+TGG | + | tig0004809:7589-7608 | None:intergenic | 60.0% | |
GGGTCAACTGGCAGCTTCCA+TGG | - | tig0004809:10523-10542 | Msa1341250:CDS | 60.0% | |
CGAGCCGAACGTTGTCAGAG+TGG | + | tig0004809:10712-10731 | None:intergenic | 60.0% | |
GCATGACGTGGCCTTCCTCA+AGG | - | tig0004809:10733-10752 | Msa1341250:intron | 60.0% | |
TGCAAGGCCCAGAGCCTGGA+AGG | + | tig0004809:7585-7604 | None:intergenic | 65.0% | |
! | CGTTCGGCTCGAGCATGACG+TGG | - | tig0004809:10721-10740 | Msa1341250:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0004809 | gene | 4228 | 11500 | 4228 | ID=Msa1341250;Name=Msa1341250 |
tig0004809 | mRNA | 4228 | 11500 | 4228 | ID=Msa1341250-mRNA-1;Parent=Msa1341250;Name=Msa1341250-mRNA-1;_AED=0.10;_eAED=0.10;_QI=426|1|0.93|1|0.93|0.87|16|295|741 |
tig0004809 | exon | 4228 | 4609 | 4228 | ID=Msa1341250-mRNA-1:exon:3082;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 4809 | 4868 | 4809 | ID=Msa1341250-mRNA-1:exon:3081;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 4950 | 5462 | 4950 | ID=Msa1341250-mRNA-1:exon:3080;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 5999 | 6334 | 5999 | ID=Msa1341250-mRNA-1:exon:3079;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 6410 | 6493 | 6410 | ID=Msa1341250-mRNA-1:exon:3078;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 7208 | 7296 | 7208 | ID=Msa1341250-mRNA-1:exon:3077;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 7870 | 7984 | 7870 | ID=Msa1341250-mRNA-1:exon:3076;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 8461 | 8587 | 8461 | ID=Msa1341250-mRNA-1:exon:3075;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 8708 | 8847 | 8708 | ID=Msa1341250-mRNA-1:exon:3074;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 9352 | 9552 | 9352 | ID=Msa1341250-mRNA-1:exon:3073;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 10056 | 10160 | 10056 | ID=Msa1341250-mRNA-1:exon:3072;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 10291 | 10368 | 10291 | ID=Msa1341250-mRNA-1:exon:3071;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 10517 | 10684 | 10517 | ID=Msa1341250-mRNA-1:exon:3070;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 10784 | 10868 | 10784 | ID=Msa1341250-mRNA-1:exon:3069;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 10948 | 11091 | 10948 | ID=Msa1341250-mRNA-1:exon:3068;Parent=Msa1341250-mRNA-1 |
tig0004809 | exon | 11181 | 11500 | 11181 | ID=Msa1341250-mRNA-1:exon:3067;Parent=Msa1341250-mRNA-1 |
tig0004809 | five_prime_UTR | 11181 | 11500 | 11181 | ID=Msa1341250-mRNA-1:five_prime_utr;Parent=Msa1341250-mRNA-1 |
tig0004809 | five_prime_UTR | 10986 | 11091 | 10986 | ID=Msa1341250-mRNA-1:five_prime_utr;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 10948 | 10985 | 10948 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 10784 | 10868 | 10784 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 10517 | 10684 | 10517 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 10291 | 10368 | 10291 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 10056 | 10160 | 10056 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 9352 | 9552 | 9352 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 8708 | 8847 | 8708 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 8461 | 8587 | 8461 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 7870 | 7984 | 7870 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 7208 | 7296 | 7208 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 6410 | 6493 | 6410 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 5999 | 6334 | 5999 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 4950 | 5462 | 4950 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 4809 | 4868 | 4809 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | CDS | 4523 | 4609 | 4523 | ID=Msa1341250-mRNA-1:cds;Parent=Msa1341250-mRNA-1 |
tig0004809 | three_prime_UTR | 4228 | 4522 | 4228 | ID=Msa1341250-mRNA-1:three_prime_utr;Parent=Msa1341250-mRNA-1 |
Gene Sequence |
Protein sequence |