AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341610 MtrunA17_Chr7g0275871 98.413 63 1 0 1 63 1 63 3.13e-40 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341610 AT2G46540.1 69.841 63 19 0 1 63 1 63 1.27e-26 92.0

Find 30 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATATAAAATGAAGTCTT+TGG 0.230572 tig0004829:+168336 None:intergenic
TTGGGATACAAGGGAATAAT+TGG 0.267204 tig0004829:-168469 Msa1341610:three_prime_UTR
ATCGAAATTGAAATTGAAAA+TGG 0.290426 tig0004829:-169662 Msa1341610:exon
ATGAAGTCTTTGGATTAATC+TGG 0.300191 tig0004829:+168346 None:intergenic
TTATATTTAAGTTAAGTCTT+TGG 0.339866 tig0004829:-168322 Msa1341610:three_prime_UTR
TCTTGTCTCATCGCTGGCTT+TGG 0.357510 tig0004829:-169586 Msa1341610:intron
TTGTTCCTCTAGTGACAATA+TGG 0.360388 tig0004829:-168234 Msa1341610:three_prime_UTR
ATATCGTTGCAGGTGGTTGC+AGG 0.366532 tig0004829:-168521 Msa1341610:intron
AGACAAGAAGCAGCGACAAC+TGG 0.459618 tig0004829:+169601 None:intergenic
GCTGCTTCTTGTCTCATCGC+TGG 0.475454 tig0004829:-169592 Msa1341610:CDS
AACTGATAGATTGTCACAAA+TGG 0.480273 tig0004829:+168369 None:intergenic
AGCATAGGCCTCACAAAAGC+AGG 0.483396 tig0004829:+169022 None:intergenic
TCACAAAAGCAGGAAGGAAA+AGG 0.487675 tig0004829:+169032 None:intergenic
GCTGATTCACTTGGGATACA+AGG 0.487925 tig0004829:-168479 Msa1341610:three_prime_UTR
TAGTAGAGGGAAAATACATC+AGG 0.506350 tig0004829:+168275 None:intergenic
AGCAGGTTGAGGTGGTTGCT+CGG 0.511614 tig0004829:+168982 None:intergenic
GAAATTGAAAATGGCTGTGA+TGG 0.511871 tig0004829:-169653 Msa1341610:exon
CAGGTGGTTGCAGGTATGAC+TGG 0.527716 tig0004829:-168512 Msa1341610:CDS
GTTCGATATGTGTCCAGCAT+AGG 0.541431 tig0004829:+169007 None:intergenic
ACATCGCTCAAAGCAGGTTG+AGG 0.547023 tig0004829:+168971 None:intergenic
AAACTCACATCGCTCAAAGC+AGG 0.558963 tig0004829:+168965 None:intergenic
GAAAGTGCATTAGCTAGTAG+AGG 0.576701 tig0004829:+168261 None:intergenic
CTGATTCACTTGGGATACAA+GGG 0.580891 tig0004829:-168478 Msa1341610:three_prime_UTR
AAAGTGCATTAGCTAGTAGA+GGG 0.595231 tig0004829:+168262 None:intergenic
AAAAGTAAGCTGATTCACTT+GGG 0.609457 tig0004829:-168487 Msa1341610:exon
TCGCTCAAAGCAGGTTGAGG+TGG 0.622674 tig0004829:+168974 None:intergenic
TAGAGGGAAAATACATCAGG+TGG 0.624421 tig0004829:+168278 None:intergenic
AAACTCCATATTGTCACTAG+AGG 0.625841 tig0004829:+168229 None:intergenic
TGAAAATGGCTGTGATGGAG+AGG 0.644713 tig0004829:-169648 Msa1341610:exon
TAGGCCTCACAAAAGCAGGA+AGG 0.675417 tig0004829:+169026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATCATTTCATATAATTA+GGG - tig0004829:168329-168348 Msa1341610:three_prime_UTR 15.0%
!! TTACAGATTTACATTATTAT+CGG + tig0004829:168399-168418 None:intergenic 15.0%
!!! TTCATACAATTTATTTGTTT+TGG + tig0004829:168940-168959 None:intergenic 15.0%
!!! TTTATTATTTTATCTCATCA+CGG - tig0004829:168962-168981 Msa1341610:intron 15.0%
!! TAAATATAAAATGAAGTCTT+TGG + tig0004829:169528-169547 None:intergenic 15.0%
!!! TTATATTTAAGTTAAGTCTT+TGG - tig0004829:169539-169558 Msa1341610:intron 15.0%
!! TCAATCATTTCATATAATTA+GGG - tig0004829:168329-168348 Msa1341610:three_prime_UTR 15.0%
!! TTACAGATTTACATTATTAT+CGG + tig0004829:168399-168418 None:intergenic 15.0%
!!! TTCATACAATTTATTTGTTT+TGG + tig0004829:168940-168959 None:intergenic 15.0%
!!! TTTATTATTTTATCTCATCA+CGG - tig0004829:168962-168981 Msa1341610:intron 15.0%
!! TAAATATAAAATGAAGTCTT+TGG + tig0004829:169528-169547 None:intergenic 15.0%
!!! TTATATTTAAGTTAAGTCTT+TGG - tig0004829:169539-169558 Msa1341610:intron 15.0%
!! ATCGAAATTGAAATTGAAAA+TGG - tig0004829:168199-168218 Msa1341610:three_prime_UTR 20.0%
!! CTCAATCATTTCATATAATT+AGG - tig0004829:168328-168347 Msa1341610:three_prime_UTR 20.0%
!!! TTATTATTTTATCTCATCAC+GGG - tig0004829:168963-168982 Msa1341610:intron 20.0%
!! ATCGAAATTGAAATTGAAAA+TGG - tig0004829:168199-168218 Msa1341610:three_prime_UTR 20.0%
!! CTCAATCATTTCATATAATT+AGG - tig0004829:168328-168347 Msa1341610:three_prime_UTR 20.0%
!!! TTATTATTTTATCTCATCAC+GGG - tig0004829:168963-168982 Msa1341610:intron 20.0%
! TATATGAAATGATTGAGAAG+AGG + tig0004829:168325-168344 None:intergenic 25.0%
! TAGACAAACAAGATTCAATT+TGG + tig0004829:168532-168551 None:intergenic 25.0%
!!! AGCATAGATAGTTCATTTTT+TGG - tig0004829:168580-168599 Msa1341610:intron 25.0%
!!! GCATAGATAGTTCATTTTTT+GGG - tig0004829:168581-168600 Msa1341610:intron 25.0%
!! CAAAGAAAATTTAAGACCAA+AGG + tig0004829:168679-168698 None:intergenic 25.0%
! AATCATGAAACAGAATAAAC+TGG + tig0004829:168723-168742 None:intergenic 25.0%
!! TACTATGTGAAATTTTCTGT+AGG - tig0004829:168806-168825 Msa1341610:intron 25.0%
!!! TATTATTTTATCTCATCACG+GGG - tig0004829:168964-168983 Msa1341610:intron 25.0%
! TTATCTCAAGTGATACTAAT+GGG + tig0004829:169150-169169 None:intergenic 25.0%
! TTTATCTCAAGTGATACTAA+TGG + tig0004829:169151-169170 None:intergenic 25.0%
! GAAACCATAAATGTAAATGA+TGG + tig0004829:169304-169323 None:intergenic 25.0%
! CATTTATGGTTTCTTGATAT+TGG - tig0004829:169311-169330 Msa1341610:intron 25.0%
!! CAATCAAATGTTTTGTAACT+AGG + tig0004829:169467-169486 None:intergenic 25.0%
! TATATGAAATGATTGAGAAG+AGG + tig0004829:168325-168344 None:intergenic 25.0%
! TAGACAAACAAGATTCAATT+TGG + tig0004829:168532-168551 None:intergenic 25.0%
!!! AGCATAGATAGTTCATTTTT+TGG - tig0004829:168580-168599 Msa1341610:intron 25.0%
!!! GCATAGATAGTTCATTTTTT+GGG - tig0004829:168581-168600 Msa1341610:intron 25.0%
!! CAAAGAAAATTTAAGACCAA+AGG + tig0004829:168679-168698 None:intergenic 25.0%
! AATCATGAAACAGAATAAAC+TGG + tig0004829:168723-168742 None:intergenic 25.0%
!! TACTATGTGAAATTTTCTGT+AGG - tig0004829:168806-168825 Msa1341610:intron 25.0%
!!! TATTATTTTATCTCATCACG+GGG - tig0004829:168964-168983 Msa1341610:intron 25.0%
! TTATCTCAAGTGATACTAAT+GGG + tig0004829:169150-169169 None:intergenic 25.0%
! TTTATCTCAAGTGATACTAA+TGG + tig0004829:169151-169170 None:intergenic 25.0%
! GAAACCATAAATGTAAATGA+TGG + tig0004829:169304-169323 None:intergenic 25.0%
! CATTTATGGTTTCTTGATAT+TGG - tig0004829:169311-169330 Msa1341610:intron 25.0%
!! CAATCAAATGTTTTGTAACT+AGG + tig0004829:169467-169486 None:intergenic 25.0%
! TTTTTGTTCCAGCCTTAATT+TGG - tig0004829:168475-168494 Msa1341610:three_prime_UTR 30.0%
ATGATAATCTACCCAAATAG+TGG + tig0004829:168501-168520 None:intergenic 30.0%
TTTGGGTAGATTATCATGTA+TGG - tig0004829:168504-168523 Msa1341610:CDS 30.0%
! ATCTTGTTTGTCTAAGATTG+AGG - tig0004829:168538-168557 Msa1341610:intron 30.0%
!!! TTCATTTTTTGGGTTACTAC+TGG - tig0004829:168591-168610 Msa1341610:intron 30.0%
ATAGTAAGTGAATAGCATGT+TGG + tig0004829:168792-168811 None:intergenic 30.0%
TAATGGGAAAAACAGAATGT+AGG + tig0004829:169134-169153 None:intergenic 30.0%
TGTGAGCACTTGAAAATATT+GGG + tig0004829:169177-169196 None:intergenic 30.0%
TTGTGAGCACTTGAAAATAT+TGG + tig0004829:169178-169197 None:intergenic 30.0%
GAGACCATCATTTACATTTA+TGG - tig0004829:169297-169316 Msa1341610:intron 30.0%
! AAAAAGTAAGCTGATTCACT+TGG - tig0004829:169373-169392 Msa1341610:intron 30.0%
! AAAAGTAAGCTGATTCACTT+GGG - tig0004829:169374-169393 Msa1341610:intron 30.0%
AACTGATAGATTGTCACAAA+TGG + tig0004829:169495-169514 None:intergenic 30.0%
ATGAAGTCTTTGGATTAATC+TGG + tig0004829:169518-169537 None:intergenic 30.0%
! TTTTTGTTCCAGCCTTAATT+TGG - tig0004829:168475-168494 Msa1341610:three_prime_UTR 30.0%
ATGATAATCTACCCAAATAG+TGG + tig0004829:168501-168520 None:intergenic 30.0%
TTTGGGTAGATTATCATGTA+TGG - tig0004829:168504-168523 Msa1341610:CDS 30.0%
! ATCTTGTTTGTCTAAGATTG+AGG - tig0004829:168538-168557 Msa1341610:intron 30.0%
!!! TTCATTTTTTGGGTTACTAC+TGG - tig0004829:168591-168610 Msa1341610:intron 30.0%
ATAGTAAGTGAATAGCATGT+TGG + tig0004829:168792-168811 None:intergenic 30.0%
TAATGGGAAAAACAGAATGT+AGG + tig0004829:169134-169153 None:intergenic 30.0%
TGTGAGCACTTGAAAATATT+GGG + tig0004829:169177-169196 None:intergenic 30.0%
TTGTGAGCACTTGAAAATAT+TGG + tig0004829:169178-169197 None:intergenic 30.0%
GAGACCATCATTTACATTTA+TGG - tig0004829:169297-169316 Msa1341610:intron 30.0%
! AAAAAGTAAGCTGATTCACT+TGG - tig0004829:169373-169392 Msa1341610:intron 30.0%
! AAAAGTAAGCTGATTCACTT+GGG - tig0004829:169374-169393 Msa1341610:intron 30.0%
AACTGATAGATTGTCACAAA+TGG + tig0004829:169495-169514 None:intergenic 30.0%
ATGAAGTCTTTGGATTAATC+TGG + tig0004829:169518-169537 None:intergenic 30.0%
GAAATTGAAAATGGCTGTGA+TGG - tig0004829:168208-168227 Msa1341610:three_prime_UTR 35.0%
GATTGAGAAGAGGAAGATTA+GGG + tig0004829:168315-168334 None:intergenic 35.0%
TGATTGAGAAGAGGAAGATT+AGG + tig0004829:168316-168335 None:intergenic 35.0%
! CCTTAATTTGGCCACTATTT+GGG - tig0004829:168487-168506 Msa1341610:exon 35.0%
! TTGTCTAAGATTGAGGTAGA+TGG - tig0004829:168545-168564 Msa1341610:intron 35.0%
TAAGATTGAGGTAGATGGAA+TGG - tig0004829:168550-168569 Msa1341610:intron 35.0%
! TTTTACTTAGCTACCTCACT+GGG - tig0004829:168617-168636 Msa1341610:intron 35.0%
CCAAAGGTAAACATGTTATG+AGG + tig0004829:168663-168682 None:intergenic 35.0%
CCTCATAACATGTTTACCTT+TGG - tig0004829:168660-168679 Msa1341610:intron 35.0%
GAAAAACAGAATGTAGGAGA+TGG + tig0004829:169128-169147 None:intergenic 35.0%
CTATTCTTGGAACTAATGGT+GGG + tig0004829:169223-169242 None:intergenic 35.0%
CAAGCTATTCTTGGAACTAA+TGG + tig0004829:169227-169246 None:intergenic 35.0%
! AAGAATAGCTTGTCTCGAAA+GGG - tig0004829:169235-169254 Msa1341610:intron 35.0%
TAAATGATGGTCTCAATCTG+GGG + tig0004829:169291-169310 None:intergenic 35.0%
GTAAATGATGGTCTCAATCT+GGG + tig0004829:169292-169311 None:intergenic 35.0%
TGTAAATGATGGTCTCAATC+TGG + tig0004829:169293-169312 None:intergenic 35.0%
TTGGGATACAAGGGAATAAT+TGG - tig0004829:169392-169411 Msa1341610:intron 35.0%
! GTACTTTTATTACTCACAGC+TGG + tig0004829:169445-169464 None:intergenic 35.0%
TAGTAGAGGGAAAATACATC+AGG + tig0004829:169589-169608 None:intergenic 35.0%
AAAGTGCATTAGCTAGTAGA+GGG + tig0004829:169602-169621 None:intergenic 35.0%
TTGTTCCTCTAGTGACAATA+TGG - tig0004829:169627-169646 Msa1341610:CDS 35.0%
AAACTCCATATTGTCACTAG+AGG + tig0004829:169635-169654 None:intergenic 35.0%
GAAATTGAAAATGGCTGTGA+TGG - tig0004829:168208-168227 Msa1341610:three_prime_UTR 35.0%
GATTGAGAAGAGGAAGATTA+GGG + tig0004829:168315-168334 None:intergenic 35.0%
TGATTGAGAAGAGGAAGATT+AGG + tig0004829:168316-168335 None:intergenic 35.0%
! CCTTAATTTGGCCACTATTT+GGG - tig0004829:168487-168506 Msa1341610:exon 35.0%
! TTGTCTAAGATTGAGGTAGA+TGG - tig0004829:168545-168564 Msa1341610:intron 35.0%
TAAGATTGAGGTAGATGGAA+TGG - tig0004829:168550-168569 Msa1341610:intron 35.0%
! TTTTACTTAGCTACCTCACT+GGG - tig0004829:168617-168636 Msa1341610:intron 35.0%
CCAAAGGTAAACATGTTATG+AGG + tig0004829:168663-168682 None:intergenic 35.0%
CCTCATAACATGTTTACCTT+TGG - tig0004829:168660-168679 Msa1341610:intron 35.0%
GAAAAACAGAATGTAGGAGA+TGG + tig0004829:169128-169147 None:intergenic 35.0%
CTATTCTTGGAACTAATGGT+GGG + tig0004829:169223-169242 None:intergenic 35.0%
CAAGCTATTCTTGGAACTAA+TGG + tig0004829:169227-169246 None:intergenic 35.0%
! AAGAATAGCTTGTCTCGAAA+GGG - tig0004829:169235-169254 Msa1341610:intron 35.0%
TAAATGATGGTCTCAATCTG+GGG + tig0004829:169291-169310 None:intergenic 35.0%
GTAAATGATGGTCTCAATCT+GGG + tig0004829:169292-169311 None:intergenic 35.0%
TGTAAATGATGGTCTCAATC+TGG + tig0004829:169293-169312 None:intergenic 35.0%
TTGGGATACAAGGGAATAAT+TGG - tig0004829:169392-169411 Msa1341610:intron 35.0%
! GTACTTTTATTACTCACAGC+TGG + tig0004829:169445-169464 None:intergenic 35.0%
TAGTAGAGGGAAAATACATC+AGG + tig0004829:169589-169608 None:intergenic 35.0%
AAAGTGCATTAGCTAGTAGA+GGG + tig0004829:169602-169621 None:intergenic 35.0%
TTGTTCCTCTAGTGACAATA+TGG - tig0004829:169627-169646 Msa1341610:CDS 35.0%
AAACTCCATATTGTCACTAG+AGG + tig0004829:169635-169654 None:intergenic 35.0%
AATAGTGGCCAAATTAAGGC+TGG + tig0004829:168486-168505 None:intergenic 40.0%
! GCCTTAATTTGGCCACTATT+TGG - tig0004829:168486-168505 Msa1341610:exon 40.0%
CCCAAATAGTGGCCAAATTA+AGG + tig0004829:168490-168509 None:intergenic 40.0%
! CTTTTACTTAGCTACCTCAC+TGG - tig0004829:168616-168635 Msa1341610:intron 40.0%
TCACAAAAGCAGGAAGGAAA+AGG + tig0004829:168832-168851 None:intergenic 40.0%
!! TTTTCCTTCCTGCTTTTGTG+AGG - tig0004829:168831-168850 Msa1341610:intron 40.0%
TCTGAAAGACCTGTAAGAAG+AGG - tig0004829:169032-169051 Msa1341610:CDS 40.0%
ACCTGTAAGAAGAGGCTTTA+GGG - tig0004829:169040-169059 Msa1341610:intron 40.0%
CTATAATGCTGAAACTCTGC+TGG + tig0004829:169082-169101 None:intergenic 40.0%
GCTATTCTTGGAACTAATGG+TGG + tig0004829:169224-169243 None:intergenic 40.0%
CTTTCGAGACAAGCTATTCT+TGG + tig0004829:169236-169255 None:intergenic 40.0%
! CAAGAATAGCTTGTCTCGAA+AGG - tig0004829:169234-169253 Msa1341610:intron 40.0%
! AGAATAGCTTGTCTCGAAAG+GGG - tig0004829:169236-169255 Msa1341610:intron 40.0%
! TTGGTGTTCTATATCGTTGC+AGG - tig0004829:169330-169349 Msa1341610:intron 40.0%
CTGATTCACTTGGGATACAA+GGG - tig0004829:169383-169402 Msa1341610:intron 40.0%
TAGAGGGAAAATACATCAGG+TGG + tig0004829:169586-169605 None:intergenic 40.0%
! GAAAGTGCATTAGCTAGTAG+AGG + tig0004829:169603-169622 None:intergenic 40.0%
AATAGTGGCCAAATTAAGGC+TGG + tig0004829:168486-168505 None:intergenic 40.0%
! GCCTTAATTTGGCCACTATT+TGG - tig0004829:168486-168505 Msa1341610:exon 40.0%
CCCAAATAGTGGCCAAATTA+AGG + tig0004829:168490-168509 None:intergenic 40.0%
! CTTTTACTTAGCTACCTCAC+TGG - tig0004829:168616-168635 Msa1341610:intron 40.0%
TCACAAAAGCAGGAAGGAAA+AGG + tig0004829:168832-168851 None:intergenic 40.0%
!! TTTTCCTTCCTGCTTTTGTG+AGG - tig0004829:168831-168850 Msa1341610:intron 40.0%
TCTGAAAGACCTGTAAGAAG+AGG - tig0004829:169032-169051 Msa1341610:CDS 40.0%
ACCTGTAAGAAGAGGCTTTA+GGG - tig0004829:169040-169059 Msa1341610:intron 40.0%
CTATAATGCTGAAACTCTGC+TGG + tig0004829:169082-169101 None:intergenic 40.0%
GCTATTCTTGGAACTAATGG+TGG + tig0004829:169224-169243 None:intergenic 40.0%
CTTTCGAGACAAGCTATTCT+TGG + tig0004829:169236-169255 None:intergenic 40.0%
! CAAGAATAGCTTGTCTCGAA+AGG - tig0004829:169234-169253 Msa1341610:intron 40.0%
! AGAATAGCTTGTCTCGAAAG+GGG - tig0004829:169236-169255 Msa1341610:intron 40.0%
! TTGGTGTTCTATATCGTTGC+AGG - tig0004829:169330-169349 Msa1341610:intron 40.0%
CTGATTCACTTGGGATACAA+GGG - tig0004829:169383-169402 Msa1341610:intron 40.0%
TAGAGGGAAAATACATCAGG+TGG + tig0004829:169586-169605 None:intergenic 40.0%
! GAAAGTGCATTAGCTAGTAG+AGG + tig0004829:169603-169622 None:intergenic 40.0%
! TGAAAATGGCTGTGATGGAG+AGG - tig0004829:168213-168232 Msa1341610:three_prime_UTR 45.0%
GTTCGATATGTGTCCAGCAT+AGG + tig0004829:168857-168876 None:intergenic 45.0%
AAACTCACATCGCTCAAAGC+AGG + tig0004829:168899-168918 None:intergenic 45.0%
GACCTGTAAGAAGAGGCTTT+AGG - tig0004829:169039-169058 Msa1341610:intron 45.0%
! CCTGTAAGAAGAGGCTTTAG+GGG - tig0004829:169041-169060 Msa1341610:intron 45.0%
GTGTTCTATATCGTTGCAGG+TGG - tig0004829:169333-169352 Msa1341610:intron 45.0%
! GCTGATTCACTTGGGATACA+AGG - tig0004829:169382-169401 Msa1341610:intron 45.0%
! TGAAAATGGCTGTGATGGAG+AGG - tig0004829:168213-168232 Msa1341610:three_prime_UTR 45.0%
GTTCGATATGTGTCCAGCAT+AGG + tig0004829:168857-168876 None:intergenic 45.0%
AAACTCACATCGCTCAAAGC+AGG + tig0004829:168899-168918 None:intergenic 45.0%
GACCTGTAAGAAGAGGCTTT+AGG - tig0004829:169039-169058 Msa1341610:intron 45.0%
! CCTGTAAGAAGAGGCTTTAG+GGG - tig0004829:169041-169060 Msa1341610:intron 45.0%
GTGTTCTATATCGTTGCAGG+TGG - tig0004829:169333-169352 Msa1341610:intron 45.0%
! GCTGATTCACTTGGGATACA+AGG - tig0004829:169382-169401 Msa1341610:intron 45.0%
AGACAAGAAGCAGCGACAAC+TGG + tig0004829:168263-168282 None:intergenic 50.0%
!! TCTTGTCTCATCGCTGGCTT+TGG - tig0004829:168275-168294 Msa1341610:three_prime_UTR 50.0%
TTAGCTACCTCACTGGGTGT+TGG - tig0004829:168623-168642 Msa1341610:intron 50.0%
TAGCTACCTCACTGGGTGTT+GGG - tig0004829:168624-168643 Msa1341610:intron 50.0%
TAGGCCTCACAAAAGCAGGA+AGG + tig0004829:168838-168857 None:intergenic 50.0%
AGCATAGGCCTCACAAAAGC+AGG + tig0004829:168842-168861 None:intergenic 50.0%
! TGCTTTTGTGAGGCCTATGC+TGG - tig0004829:168841-168860 Msa1341610:intron 50.0%
ACATCGCTCAAAGCAGGTTG+AGG + tig0004829:168893-168912 None:intergenic 50.0%
CCCCTAAAGCCTCTTCTTAC+AGG + tig0004829:169044-169063 None:intergenic 50.0%
GTCTCAATCTGGGGAGAGTA+GGG + tig0004829:169282-169301 None:intergenic 50.0%
ATATCGTTGCAGGTGGTTGC+AGG - tig0004829:169340-169359 Msa1341610:intron 50.0%
AGACAAGAAGCAGCGACAAC+TGG + tig0004829:168263-168282 None:intergenic 50.0%
!! TCTTGTCTCATCGCTGGCTT+TGG - tig0004829:168275-168294 Msa1341610:three_prime_UTR 50.0%
TTAGCTACCTCACTGGGTGT+TGG - tig0004829:168623-168642 Msa1341610:intron 50.0%
TAGCTACCTCACTGGGTGTT+GGG - tig0004829:168624-168643 Msa1341610:intron 50.0%
TAGGCCTCACAAAAGCAGGA+AGG + tig0004829:168838-168857 None:intergenic 50.0%
AGCATAGGCCTCACAAAAGC+AGG + tig0004829:168842-168861 None:intergenic 50.0%
! TGCTTTTGTGAGGCCTATGC+TGG - tig0004829:168841-168860 Msa1341610:intron 50.0%
ACATCGCTCAAAGCAGGTTG+AGG + tig0004829:168893-168912 None:intergenic 50.0%
CCCCTAAAGCCTCTTCTTAC+AGG + tig0004829:169044-169063 None:intergenic 50.0%
GTCTCAATCTGGGGAGAGTA+GGG + tig0004829:169282-169301 None:intergenic 50.0%
ATATCGTTGCAGGTGGTTGC+AGG - tig0004829:169340-169359 Msa1341610:intron 50.0%
GCTGCTTCTTGTCTCATCGC+TGG - tig0004829:168269-168288 Msa1341610:three_prime_UTR 55.0%
!! TACCTCACTGGGTGTTGGGA+AGG - tig0004829:168628-168647 Msa1341610:intron 55.0%
! AGCAGGTTGAGGTGGTTGCT+CGG + tig0004829:168882-168901 None:intergenic 55.0%
! TCGCTCAAAGCAGGTTGAGG+TGG + tig0004829:168890-168909 None:intergenic 55.0%
GGTCTCAATCTGGGGAGAGT+AGG + tig0004829:169283-169302 None:intergenic 55.0%
CAGGTGGTTGCAGGTATGAC+TGG - tig0004829:169349-169368 Msa1341610:intron 55.0%
GCTGCTTCTTGTCTCATCGC+TGG - tig0004829:168269-168288 Msa1341610:three_prime_UTR 55.0%
!! TACCTCACTGGGTGTTGGGA+AGG - tig0004829:168628-168647 Msa1341610:intron 55.0%
! AGCAGGTTGAGGTGGTTGCT+CGG + tig0004829:168882-168901 None:intergenic 55.0%
! TCGCTCAAAGCAGGTTGAGG+TGG + tig0004829:168890-168909 None:intergenic 55.0%
GGTCTCAATCTGGGGAGAGT+AGG + tig0004829:169283-169302 None:intergenic 55.0%
CAGGTGGTTGCAGGTATGAC+TGG - tig0004829:169349-169368 Msa1341610:intron 55.0%
CACCTTCCCAACACCCAGTG+AGG + tig0004829:168633-168652 None:intergenic 60.0%
CACCTTCCCAACACCCAGTG+AGG + tig0004829:168633-168652 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0004829 gene 168174 169709 168174 ID=Msa1341610;Name=Msa1341610
tig0004829 mRNA 168174 169709 168174 ID=Msa1341610-mRNA-1;Parent=Msa1341610;Name=Msa1341610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=44|1|1|1|1|1|3|328|63
tig0004829 exon 168174 168531 168174 ID=Msa1341610-mRNA-1:exon:3241;Parent=Msa1341610-mRNA-1
tig0004829 exon 168973 169055 168973 ID=Msa1341610-mRNA-1:exon:3240;Parent=Msa1341610-mRNA-1
tig0004829 exon 169587 169709 169587 ID=Msa1341610-mRNA-1:exon:3239;Parent=Msa1341610-mRNA-1
tig0004829 five_prime_UTR 169666 169709 169666 ID=Msa1341610-mRNA-1:five_prime_utr;Parent=Msa1341610-mRNA-1
tig0004829 CDS 169587 169665 169587 ID=Msa1341610-mRNA-1:cds;Parent=Msa1341610-mRNA-1
tig0004829 CDS 168973 169055 168973 ID=Msa1341610-mRNA-1:cds;Parent=Msa1341610-mRNA-1
tig0004829 CDS 168502 168531 168502 ID=Msa1341610-mRNA-1:cds;Parent=Msa1341610-mRNA-1
tig0004829 three_prime_UTR 168174 168501 168174 ID=Msa1341610-mRNA-1:three_prime_utr;Parent=Msa1341610-mRNA-1
Gene Sequence

>Msa1341610

ATGGCTGTGATGGAGAGGCTAAGAATGTTCGTTGCTCAAGAACCAGTTGTCGCTGCTTCTTGTCTCATCGCTGGCTTTGGCCTTTTCCTTCCTGCTTTTGTGAGGCCTATGCTGGACACATATCGAACAGCCGAGCAACCACCTCAACCTGCTTTGAGCGATGTGGTTGCAGGTATGACTGGTAAAAAGTAA
Protein sequence

>Msa1341610

MAVMERLRMFVAQEPVVAASCLIAGFGLFLPAFVRPMLDTYRTAEQPPQPALSDVVAGMTGKK*