AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342990 MtrunA17_Chr4g0037131 99.303 287 2 0 1 287 1 287 0.0 587
Msa1342990 MtrunA17_Chr5g0405731 71.326 279 75 1 7 285 6 279 4.94e-152 426
Msa1342990 MtrunA17_Chr4g0030171 63.636 242 87 1 6 246 7 248 1.92e-110 319
Msa1342990 MtrunA17_Chr3g0124821 48.855 262 107 6 14 248 100 361 1.38e-77 241
Msa1342990 MtrunA17_Chr3g0137751 38.017 242 126 7 13 244 87 314 9.40e-44 151
Msa1342990 MtrunA17_Chr4g0068621 28.090 267 132 10 32 249 69 324 3.88e-16 77.4
Msa1342990 MtrunA17_Chr7g0225221 28.226 248 135 8 36 244 60 303 1.64e-15 75.5
Msa1342990 MtrunA17_Chr4g0072091 28.102 274 142 10 32 258 55 320 8.33e-15 73.6
Msa1342990 MtrunA17_Chr1g0188431 29.771 262 130 11 23 243 61 309 1.03e-14 73.2
Msa1342990 MtrunA17_Chr5g0426581 34.911 169 76 5 24 158 109 277 1.15e-14 73.2
Msa1342990 MtrunA17_Chr4g0053871 26.374 273 150 9 32 260 58 323 5.71e-14 70.9
Msa1342990 MtrunA17_Chr3g0129061 26.857 175 90 5 103 243 134 304 1.46e-12 67.0
Msa1342990 MtrunA17_Chr4g0013181 27.344 256 126 9 35 243 93 335 1.80e-12 67.0
Msa1342990 MtrunA17_Chr2g0278671 30.952 168 97 6 9 164 30 190 2.14e-12 66.2
Msa1342990 MtrunA17_Chr7g0254201 26.316 247 140 9 35 244 54 295 3.18e-12 65.9
Msa1342990 MtrunA17_Chr5g0432331 27.344 256 128 9 35 243 90 334 7.68e-12 65.1
Msa1342990 MtrunA17_Chr3g0106921 25.197 254 133 7 35 242 59 301 1.94e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342990 AT4G35000.1 78.819 288 59 2 1 287 1 287 1.18e-160 448
Msa1342990 AT4G35970.1 66.784 283 88 2 5 287 3 279 5.27e-135 383
Msa1342990 AT4G35970.2 71.364 220 62 1 5 224 3 221 2.04e-113 326
Msa1342990 AT3G09640.2 62.500 240 90 0 7 246 9 248 1.81e-107 312
Msa1342990 AT3G09640.1 62.500 240 90 0 7 246 9 248 1.81e-107 312
Msa1342990 AT1G07890.2 60.744 242 94 1 6 246 7 248 1.84e-104 305
Msa1342990 AT1G07890.8 60.744 242 94 1 6 246 7 248 1.84e-104 305
Msa1342990 AT1G07890.4 60.744 242 94 1 6 246 7 248 1.84e-104 305
Msa1342990 AT1G07890.7 60.744 242 94 1 6 246 7 248 1.84e-104 305
Msa1342990 AT1G07890.1 60.744 242 94 1 6 246 7 248 1.84e-104 305
Msa1342990 AT1G07890.3 60.744 242 94 1 6 246 7 248 1.84e-104 305
Msa1342990 AT1G07890.5 60.744 242 94 1 6 246 7 248 1.84e-104 305
Msa1342990 AT1G07890.6 60.166 241 95 1 6 245 7 247 1.92e-103 302
Msa1342990 AT4G08390.2 48.438 256 107 4 14 244 106 361 1.17e-76 238
Msa1342990 AT4G08390.5 48.438 256 107 4 14 244 106 361 1.17e-76 238
Msa1342990 AT4G08390.1 48.438 256 107 4 14 244 106 361 1.17e-76 238
Msa1342990 AT4G08390.3 48.438 256 107 4 14 244 105 360 1.32e-76 238
Msa1342990 AT1G77490.1 49.219 256 105 4 14 244 85 340 6.43e-76 238
Msa1342990 AT1G77490.2 49.219 256 105 4 14 244 85 340 7.12e-76 238
Msa1342990 AT4G08390.4 44.531 256 91 5 14 244 106 335 8.94e-66 209
Msa1342990 AT4G32320.1 38.298 235 123 6 19 244 102 323 9.71e-42 147
Msa1342990 AT2G24800.1 32.308 195 90 4 90 244 120 312 7.58e-18 82.4
Msa1342990 AT4G31760.1 31.443 194 92 5 90 244 118 309 3.85e-17 80.5
Msa1342990 AT3G28200.1 30.890 191 90 4 90 244 115 299 2.11e-16 78.2
Msa1342990 AT4G09010.2 35.185 162 67 5 33 158 49 208 1.33e-15 75.5
Msa1342990 AT4G30170.1 27.626 257 136 7 32 244 58 308 1.62e-15 75.9
Msa1342990 AT4G09010.1 29.412 272 111 10 33 262 114 346 2.85e-15 75.5
Msa1342990 AT4G09010.3 29.412 272 111 10 33 262 161 393 5.84e-15 74.7
Msa1342990 AT5G17820.1 26.502 283 136 10 11 240 29 292 2.16e-14 72.4
Msa1342990 AT5G17820.2 26.280 293 144 10 1 240 72 345 7.06e-14 71.6
Msa1342990 AT5G14130.1 26.667 255 141 7 32 244 63 313 7.74e-14 71.2
Msa1342990 AT5G14130.2 26.667 255 141 7 32 244 104 354 1.20e-13 70.9
Msa1342990 AT4G33420.1 32.124 193 97 8 81 243 119 307 3.33e-13 69.3
Msa1342990 AT4G33420.2 32.124 193 97 8 81 243 166 354 4.01e-13 69.3
Msa1342990 AT4G37530.1 26.493 268 141 7 33 251 59 319 5.54e-13 68.6
Msa1342990 AT1G44970.1 26.562 256 135 9 35 243 79 328 7.49e-13 68.2
Msa1342990 AT1G14550.1 26.690 281 160 10 4 243 28 303 9.94e-13 67.8
Msa1342990 AT4G37520.1 26.119 268 142 7 33 251 59 319 1.39e-12 67.4
Msa1342990 AT2G18980.1 27.692 260 132 9 32 244 56 306 3.50e-12 66.2
Msa1342990 AT1G14540.1 25.442 283 160 10 4 243 23 297 1.04e-11 64.7
Msa1342990 AT4G25980.1 29.861 144 98 2 24 164 49 192 3.45e-11 63.2
Msa1342990 AT4G37530.2 34.459 148 81 4 33 167 59 203 3.50e-11 62.8

Find 149 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTTGCAGTTGAGGTTAC+TGG 0.120093 tig0006056:-249242 Msa1342990:CDS
TCCAACAGACAGGGCTTTAT+TGG 0.192934 tig0006056:-248425 Msa1342990:CDS
GATCTTCAAGAGAAAGTAAA+TGG 0.217985 tig0006056:+247329 Msa1342980:intron
AAAATTTACAACCCTGATTA+TGG 0.231978 tig0006056:+252085 None:intergenic
CACGTGGTGGGATTGGTTTA+TGG 0.241460 tig0006056:+251534 None:intergenic
CCTTTGTGCTTCCAGCTTGC+GGG 0.246744 tig0006056:-249266 Msa1342990:intron
TCCGATAACAATGGCGTTCC+CGG 0.252709 tig0006056:-251371 Msa1342990:exon
TTGCTACATTCTACATCTAT+TGG 0.258623 tig0006056:-247437 Msa1342990:three_prime_UTR
GTTATGATGCTGCTCATAAT+TGG 0.266600 tig0006056:+247380 Msa1342980:intron
AATTGGTTATATAATGATAA+AGG 0.273147 tig0006056:+251897 None:intergenic
ACGTGGTGGGATTGGTTTAT+GGG 0.284344 tig0006056:+251535 None:intergenic
TCAACATAACGGCGAAATTC+AGG 0.286433 tig0006056:+248397 None:intergenic
TGTCAATATCAGGATACTTT+TGG 0.287568 tig0006056:-248476 Msa1342990:intron
CTTTAATCTCGAATGAGTTC+TGG 0.298008 tig0006056:+252366 None:intergenic
AAAATTCAATGGCCATAATC+AGG 0.308429 tig0006056:-252097 Msa1342990:five_prime_UTR
GTACTGGCACAAAGCGCTTT+TGG 0.320365 tig0006056:-247638 Msa1342990:CDS
TGTCAAGAATGGAAGATAAT+AGG 0.329022 tig0006056:+252474 None:intergenic
TGCACAACATACCCTTCTTC+CGG 0.335633 tig0006056:+249196 None:intergenic
AAAACGTGATTTGATTTGAT+TGG 0.338766 tig0006056:-251481 Msa1342990:five_prime_UTR
TTGTTGCAGTTGAGGTTACT+GGG 0.345113 tig0006056:-249241 Msa1342990:CDS
TCTGTTGTCTTAAATTAAAT+AGG 0.345657 tig0006056:-251562 Msa1342990:five_prime_UTR
GGTAAATAATCACCTGATAA+AGG 0.356498 tig0006056:+250829 None:intergenic
ACCACTTTAAATTAATCGTT+TGG 0.356685 tig0006056:-251748 Msa1342990:five_prime_UTR
AACAGACCCATCTTCCAAAT+TGG 0.357484 tig0006056:+251579 None:intergenic
TACAAGATAGTACTTTGAAT+TGG 0.372072 tig0006056:+251880 None:intergenic
ACCGGGAACGCCATTGTTAT+CGG 0.374021 tig0006056:+251370 None:intergenic
GAACCCAATACTGCTCGTTA+TGG 0.374494 tig0006056:+247505 Msa1342980:intron
AAAGATATTGTTGCACTGTC+TGG 0.377559 tig0006056:-248825 Msa1342990:CDS
CTCATATGCAGACCTTTATC+AGG 0.378885 tig0006056:-250841 Msa1342990:intron
CCCACAGTCAACTTTGTTCC+CGG 0.379705 tig0006056:-249215 Msa1342990:CDS
AAGGTCTGCATATGAGATCT+TGG 0.387975 tig0006056:+250848 None:intergenic
TGCTACATTCTACATCTATT+GGG 0.389003 tig0006056:-247436 Msa1342990:three_prime_UTR
TTTAAATTAATCGTTTGGTT+AGG 0.395658 tig0006056:-251743 Msa1342990:five_prime_UTR
AAACGTGATTTGATTTGATT+GGG 0.396976 tig0006056:-251480 Msa1342990:five_prime_UTR
GCACAACATACCCTTCTTCC+GGG 0.398155 tig0006056:+249197 None:intergenic
AACCCAATACTGCTCGTTAT+GGG 0.400077 tig0006056:+247506 Msa1342980:intron
CATAAGAAACTTTCAGAGCT+TGG 0.401756 tig0006056:-247704 Msa1342990:CDS
AAGTTATCCTCCGTTGTACT+TGG 0.413081 tig0006056:+251849 None:intergenic
TTTGATCTGTTCAGCTCTGT+TGG 0.414035 tig0006056:-247546 Msa1342990:three_prime_UTR
CCATCAAACCCTGATCTCTC+TGG 0.416214 tig0006056:+248698 None:intergenic
AGCTATAGCGTGTTTCTAAA+CGG 0.420245 tig0006056:-252276 Msa1342990:five_prime_UTR
GGAGCAGTTGCCTTTGAGCT+TGG 0.421255 tig0006056:+247674 Msa1342980:CDS
TCGTTCCGAATAGAACCATT+AGG 0.431324 tig0006056:+251083 None:intergenic
GGCCCATAACGAGCAGTATT+GGG 0.433144 tig0006056:-247508 Msa1342990:three_prime_UTR
ATGGATAAGTGGAAGGGAAT+GGG 0.442811 tig0006056:+251442 None:intergenic
CCAGAGAGATCAGGGTTTGA+TGG 0.443075 tig0006056:-248698 Msa1342990:CDS
ATCAGGAAGCCGCCCATCTC+TGG 0.443990 tig0006056:+249088 None:intergenic
TCAACTTTGTTCCCGGAAGA+AGG 0.446728 tig0006056:-249208 Msa1342990:CDS
AAGATATTGTTGCACTGTCT+GGG 0.448168 tig0006056:-248824 Msa1342990:CDS
AGAGCACATCCAGAGAGATC+AGG 0.450497 tig0006056:-248707 Msa1342990:CDS
TCTTGCGCCAATTTGGAAGA+TGG 0.453439 tig0006056:-251586 Msa1342990:five_prime_UTR
ACCAAACGATTAATTTAAAG+TGG 0.454199 tig0006056:+251747 None:intergenic
ACCAAGACAGGTGGACCTAA+TGG 0.458230 tig0006056:-251098 Msa1342990:CDS
TTCTTCATATCAAAATTCAA+TGG 0.460404 tig0006056:-252108 Msa1342990:five_prime_UTR
CTTGCGCCAATTTGGAAGAT+GGG 0.461049 tig0006056:-251585 Msa1342990:five_prime_UTR
TCACCATTGATTCTCTTCGT+TGG 0.462019 tig0006056:+252147 None:intergenic
TCCAATAAAGCCCTGTCTGT+TGG 0.463470 tig0006056:+248424 None:intergenic
TGGCTTTGCGCCAAGCTCAA+AGG 0.464700 tig0006056:-247684 Msa1342990:CDS
GCCAGTACGGTTGCATCCAC+AGG 0.465545 tig0006056:+247653 Msa1342980:CDS
CAACAGGATTATTGATCATC+GGG 0.465655 tig0006056:+247203 Msa1342980:intron
CGATATCAACGCGCGGAGAA+AGG 0.466230 tig0006056:-252221 Msa1342990:five_prime_UTR
TACTCTGAGTCTACTACTAC+CGG 0.469129 tig0006056:+251352 None:intergenic
AACACACCTTGTTTAGCATC+AGG 0.470481 tig0006056:+249071 None:intergenic
TGACTGACACGTGGTGGGAT+TGG 0.474160 tig0006056:+251527 None:intergenic
TGCTTAAACTTCCAACAGAC+AGG 0.474376 tig0006056:-248435 Msa1342990:CDS
TTTGAAACAAGGTCTACAAA+TGG 0.475717 tig0006056:-252026 Msa1342990:five_prime_UTR
TTTCTCTTGAAGATCGGAAA+AGG 0.477637 tig0006056:-247321 Msa1342990:three_prime_UTR
CGTAGACAACAAACAAAGTT+CGG 0.479891 tig0006056:+251977 None:intergenic
GATCAGGGTTTGATGGCCCT+TGG 0.481908 tig0006056:-248691 Msa1342990:CDS
ATTTACTTTCTCTTGAAGAT+CGG 0.485075 tig0006056:-247327 Msa1342990:three_prime_UTR
AGCAATTGAACTGTCAAGAA+TGG 0.489019 tig0006056:+252463 None:intergenic
GCCGCTGCAGTGGTGATCCT+CGG 0.490613 tig0006056:-247605 Msa1342990:CDS
TCAAAAGTATGTACCAGAGA+TGG 0.493165 tig0006056:-249101 Msa1342990:CDS
TCCTGTGGATGCAACCGTAC+TGG 0.493313 tig0006056:-247654 Msa1342990:CDS
TGATTCAGTTGGCATGATGC+GGG 0.493944 tig0006056:-251137 Msa1342990:intron
AGGTCTGCATATGAGATCTT+GGG 0.497720 tig0006056:+250849 None:intergenic
TTAGAAACACGCTATAGCTT+CGG 0.498075 tig0006056:+252280 None:intergenic
GTGGACCTAATGGTTCTATT+CGG 0.498836 tig0006056:-251088 Msa1342990:CDS
TGGCCCATAACGAGCAGTAT+TGG 0.498931 tig0006056:-247509 Msa1342990:three_prime_UTR
TTTGTATGGAAATGGATAAG+TGG 0.502892 tig0006056:+251431 None:intergenic
ACCATTAGGTCCACCTGTCT+TGG 0.507492 tig0006056:+251097 None:intergenic
TACGCTAAGCGAAGCATGAT+GGG 0.509894 tig0006056:+251265 None:intergenic
CTCAAAGGCAACTGCTCCTG+TGG 0.511925 tig0006056:-247669 Msa1342990:CDS
TTCAGAGGGTCCTCTGTCCA+AGG 0.512263 tig0006056:+248674 None:intergenic
GATACTAAGAAAACATAGAC+TGG 0.514576 tig0006056:+247470 Msa1342980:intron
GCTTCGGTCAGTGCCGCTGC+GGG 0.522180 tig0006056:+252296 None:intergenic
TCTCCAACGAAGAGAATCAA+TGG 0.524340 tig0006056:-252150 Msa1342990:five_prime_UTR
TGCGGGTGTTGTTGCAGTTG+AGG 0.524490 tig0006056:-249249 Msa1342990:CDS
TTGTATGAAACTCACAAAAG+AGG 0.531958 tig0006056:-247578 Msa1342990:CDS
AATGGATAAGTGGAAGGGAA+TGG 0.533516 tig0006056:+251441 None:intergenic
CTTGACAGTTCAATTGCTTG+TGG 0.538823 tig0006056:-252458 Msa1342990:five_prime_UTR
TGGCGCAAGAACAAAATTGA+GGG 0.539454 tig0006056:+251599 None:intergenic
TTCTGTTGGCGATGAGAGCA+CGG 0.540281 tig0006056:+251296 None:intergenic
GAGCACATCCAGAGAGATCA+GGG 0.542419 tig0006056:-248706 Msa1342990:CDS
ATCTTCAAGAGAAAGTAAAT+GGG 0.544266 tig0006056:+247330 Msa1342980:intron
ACAACAGGATTATTGATCAT+CGG 0.548720 tig0006056:+247202 Msa1342980:intron
CAAAAGTATGTACCAGAGAT+GGG 0.549843 tig0006056:-249100 Msa1342990:CDS
GTTTGATGGCCCTTGGACAG+AGG 0.551642 tig0006056:-248684 Msa1342990:CDS
TGTATGAAACTCACAAAAGA+GGG 0.552331 tig0006056:-247577 Msa1342990:CDS
CAACTTTGTTCCCGGAAGAA+GGG 0.554225 tig0006056:-249207 Msa1342990:intron
GATAAGTGGAAGGGAATGGG+TGG 0.556354 tig0006056:+251445 None:intergenic
TTGGCGCAAGAACAAAATTG+AGG 0.559052 tig0006056:+251598 None:intergenic
TATGAGTTATCAAACTTCAG+AGG 0.559558 tig0006056:+248659 None:intergenic
TATGATGCAAAGACCAAGAC+AGG 0.564243 tig0006056:-251110 Msa1342990:CDS
GATGGGAGCACAGTTTCTGT+TGG 0.565626 tig0006056:+251282 None:intergenic
TATGGAAATGGATAAGTGGA+AGG 0.565663 tig0006056:+251435 None:intergenic
TTGTCTACGATTGTGAGTGT+TGG 0.569122 tig0006056:-251963 Msa1342990:five_prime_UTR
AAAAGCGCTTTGTGCCAGTA+CGG 0.571570 tig0006056:+247640 Msa1342980:CDS
TTCTACTGACTGACACGTGG+TGG 0.571789 tig0006056:+251521 None:intergenic
AGTGGAAGGGAATGGGTGGG+TGG 0.573597 tig0006056:+251449 None:intergenic
TTACGCTAAGCGAAGCATGA+TGG 0.574425 tig0006056:+251264 None:intergenic
CGGCTTCCTGATGCTAAACA+AGG 0.575592 tig0006056:-249077 Msa1342990:intron
AGCTTCGGTCAGTGCCGCTG+CGG 0.578228 tig0006056:+252295 None:intergenic
AAATTCAATGGCCATAATCA+GGG 0.584316 tig0006056:-252096 Msa1342990:five_prime_UTR
TTGATTCAGTTGGCATGATG+CGG 0.599244 tig0006056:-251138 Msa1342990:intron
ATGAGTTATCAAACTTCAGA+GGG 0.599283 tig0006056:+248660 None:intergenic
CTCTTGAAGATCGGAAAAGG+AGG 0.601669 tig0006056:-247318 Msa1342990:three_prime_UTR
TTATATAATGATAAAGGCAA+AGG 0.604195 tig0006056:+251903 None:intergenic
TCTACTGACTGACACGTGGT+GGG 0.606965 tig0006056:+251522 None:intergenic
TTCGTTCTCTCCGATAACAA+TGG 0.607098 tig0006056:-251380 Msa1342990:exon
ACTGTCTGGGGCACATACGC+TGG 0.608033 tig0006056:-248811 Msa1342990:intron
CCATACGATAAAAGATATCA+CGG 0.612766 tig0006056:+248859 None:intergenic
TCGCATACAGCTCAACATAA+CGG 0.615688 tig0006056:+248386 None:intergenic
AGTAGACTCAGAGTATCTCA+AGG 0.616880 tig0006056:-251344 Msa1342990:CDS
CCGGGAACAAAGTTGACTGT+GGG 0.622160 tig0006056:+249215 None:intergenic
TCAGAGGGTCCTCTGTCCAA+GGG 0.622882 tig0006056:+248675 None:intergenic
ACCGAGGATCACCACTGCAG+CGG 0.626779 tig0006056:+247604 Msa1342980:CDS
GAACGAAACAAGAGTTGCAG+TGG 0.629907 tig0006056:+251396 None:intergenic
TCCGGGAACAAAGTTGACTG+TGG 0.630776 tig0006056:+249214 None:intergenic
AGATATTGTTGCACTGTCTG+GGG 0.639389 tig0006056:-248823 Msa1342990:CDS
TTATGTTGAGCTGTATGCGA+AGG 0.641815 tig0006056:-248383 Msa1342990:intron
TGTTGCAGTTGAGGTTACTG+GGG 0.642422 tig0006056:-249240 Msa1342990:CDS
ATGGAAATGGATAAGTGGAA+GGG 0.645319 tig0006056:+251436 None:intergenic
AGTTGTAGCTGCCGCTGCAG+TGG 0.652303 tig0006056:-247615 Msa1342990:CDS
GCTTAAACTTCCAACAGACA+GGG 0.655046 tig0006056:-248434 Msa1342990:CDS
GTTGCAGTTGAGGTTACTGG+GGG 0.656351 tig0006056:-249239 Msa1342990:CDS
TGTTGGATGTCACGTCTGTG+TGG 0.663043 tig0006056:-247529 Msa1342990:three_prime_UTR
CTCTTCTACTGACTGACACG+TGG 0.671133 tig0006056:+251518 None:intergenic
ACTCTGAGTCTACTACTACC+GGG 0.677019 tig0006056:+251353 None:intergenic
TAATGGTTCTATTCGGAACG+AGG 0.677025 tig0006056:-251081 Msa1342990:CDS
ATAAGTGGAAGGGAATGGGT+GGG 0.681689 tig0006056:+251446 None:intergenic
GGAGCTGAAACATCCCGCAG+CGG 0.688863 tig0006056:-252309 Msa1342990:five_prime_UTR
TAGAGAAGTTCCAAGTACAA+CGG 0.694219 tig0006056:-251859 Msa1342990:five_prime_UTR
GATGCAAAGACCAAGACAGG+TGG 0.698537 tig0006056:-251107 Msa1342990:CDS
GAGTTTCATACAAGTAACCG+AGG 0.700364 tig0006056:+247588 Msa1342980:intron
TATAGCGTGTTTCTAAACGG+AGG 0.702771 tig0006056:-252273 Msa1342990:five_prime_UTR
AGAAGTTCCAAGTACAACGG+AGG 0.710763 tig0006056:-251856 Msa1342990:five_prime_UTR
AAGTATGTACCAGAGATGGG+CGG 0.726843 tig0006056:-249097 Msa1342990:CDS
GGTGTGACGATATCAACGCG+CGG 0.780015 tig0006056:-252228 Msa1342990:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAATAAAATATT+GGG + tig0006056:251139-251158 None:intergenic 0.0%
!! AAAAAATAAAAATAAAATAT+TGG + tig0006056:251140-251159 None:intergenic 0.0%
!!! TTATTTTTTAATTTTTATTT+TGG - tig0006056:251151-251170 Msa1342990:intron 0.0%
!! AATAATAAAAAGATATAGAA+AGG + tig0006056:250910-250929 None:intergenic 10.0%
!! GAAAATAAAATAAGAATTTA+TGG + tig0006056:250947-250966 None:intergenic 10.0%
!! AATTGGTTATATAATGATAA+AGG + tig0006056:247794-247813 Msa1342980:CDS 15.0%
!! TTTCATAACTATCAAAATTT+AGG + tig0006056:249947-249966 None:intergenic 15.0%
!! TACTATATATGAAAATCAAA+CGG + tig0006056:250082-250101 None:intergenic 15.0%
!!! CAAATTTTTCAAATCAAAAC+TGG - tig0006056:247263-247282 Msa1342990:three_prime_UTR 20.0%
!! TTCTTCATATCAAAATTCAA+TGG - tig0006056:247580-247599 Msa1342990:CDS 20.0%
!! TTATATAATGATAAAGGCAA+AGG + tig0006056:247788-247807 Msa1342980:CDS 20.0%
!! TTTAAATTAATCGTTTGGTT+AGG - tig0006056:247945-247964 Msa1342990:intron 20.0%
!! TCTGTTGTCTTAAATTAAAT+AGG - tig0006056:248126-248145 Msa1342990:intron 20.0%
!!! CTTGTTTTTTTTTTCGATTT+CGG - tig0006056:248478-248497 Msa1342990:intron 20.0%
!! CTTAACTATTGTTAATTTCA+CGG - tig0006056:248504-248523 Msa1342990:intron 20.0%
!! AAAACTAGTATGAATATCAT+TGG - tig0006056:248757-248776 Msa1342990:intron 20.0%
!! TAGAAGACAATTTCTTAAAA+AGG + tig0006056:249472-249491 None:intergenic 20.0%
!! ATTATATTATGCCTTGAATT+AGG - tig0006056:249606-249625 Msa1342990:intron 20.0%
!! ACATATAAAGTGATTAAATC+CGG - tig0006056:250252-250271 Msa1342990:intron 20.0%
!! ATAACTAATATTGTAACGAA+AGG + tig0006056:250521-250540 None:intergenic 20.0%
!! TATAAACATGTCAATGATAT+TGG - tig0006056:250790-250809 Msa1342990:intron 20.0%
!!! ATTTTATTTTCTGTGTTTCA+AGG - tig0006056:250956-250975 Msa1342990:intron 20.0%
!!! TTTTATTTTCTGTGTTTCAA+GGG - tig0006056:250957-250976 Msa1342990:intron 20.0%
!! ATATTGACAAAGATATTTAG+GGG + tig0006056:251201-251220 None:intergenic 20.0%
!! GATATTGACAAAGATATTTA+GGG + tig0006056:251202-251221 None:intergenic 20.0%
!! TGATATTGACAAAGATATTT+AGG + tig0006056:251203-251222 None:intergenic 20.0%
!! TAAATATCTTTGTCAATATC+AGG - tig0006056:251202-251221 Msa1342990:intron 20.0%
!!! TACGTTATTTAGTTTAAATG+TGG + tig0006056:251726-251745 None:intergenic 20.0%
!!! AGATTCATTTAATTTAACGA+TGG + tig0006056:251875-251894 None:intergenic 20.0%
!! TGAAGAGAATCAAGTTTTTA+AGG - tig0006056:247439-247458 Msa1342990:three_prime_UTR 25.0%
! AAAATTTACAACCCTGATTA+TGG + tig0006056:247606-247625 Msa1342980:CDS 25.0%
!!! TTTTAGTCATGTTTGAAACA+AGG - tig0006056:247651-247670 Msa1342990:CDS 25.0%
! TACAAGATAGTACTTTGAAT+TGG + tig0006056:247811-247830 None:intergenic 25.0%
! ACCACTTTAAATTAATCGTT+TGG - tig0006056:247940-247959 Msa1342990:intron 25.0%
! ACCAAACGATTAATTTAAAG+TGG + tig0006056:247944-247963 None:intergenic 25.0%
!!! AAAACGTGATTTGATTTGAT+TGG - tig0006056:248207-248226 Msa1342990:intron 25.0%
!!! AAACGTGATTTGATTTGATT+GGG - tig0006056:248208-248227 Msa1342990:intron 25.0%
! CGAAATCGAAAAAAAAAACA+AGG + tig0006056:248480-248499 None:intergenic 25.0%
!!! TTTTGTTGATTTGATTCAGT+TGG - tig0006056:248540-248559 Msa1342990:intron 25.0%
!!! AAGAAAGCTATTGATTTTTG+CGG - tig0006056:248662-248681 Msa1342990:CDS 25.0%
! AAACAAGAAAACTCTTAGAA+AGG + tig0006056:248786-248805 None:intergenic 25.0%
! TTTGCTAGAAATTGTAGAAT+GGG - tig0006056:248938-248957 Msa1342990:intron 25.0%
! AAAAAGGTAAACAAGAACAA+GGG + tig0006056:249456-249475 None:intergenic 25.0%
! TAAAAAGGTAAACAAGAACA+AGG + tig0006056:249457-249476 None:intergenic 25.0%
! TGTTCTATTCAATCATTTAC+AGG - tig0006056:249514-249533 Msa1342990:intron 25.0%
! GAAATAAAGAGTTCAGAAAA+TGG + tig0006056:249700-249719 None:intergenic 25.0%
! TGAAATAGAACTACATTTCT+TGG - tig0006056:249890-249909 Msa1342990:intron 25.0%
! TTACATGTATTCAAACTTAG+TGG - tig0006056:250029-250048 Msa1342990:intron 25.0%
! GACACTTACAAAGTAATTAA+GGG + tig0006056:250193-250212 None:intergenic 25.0%
! AGACACTTACAAAGTAATTA+AGG + tig0006056:250194-250213 None:intergenic 25.0%
!!! TGCATATCTTGTTTTATACA+AGG + tig0006056:250334-250353 None:intergenic 25.0%
!! TGTTTCTAAATTATTGTCAG+TGG - tig0006056:250636-250655 Msa1342990:intron 25.0%
!! CTTAATTTTGTTGATGTGTA+GGG + tig0006056:250737-250756 None:intergenic 25.0%
!! TCTTAATTTTGTTGATGTGT+AGG + tig0006056:250738-250757 None:intergenic 25.0%
! TGCTATTGAAAAACCATATT+TGG + tig0006056:251402-251421 None:intergenic 25.0%
!! TATTGGATCAATCTTTTGAT+TGG - tig0006056:251458-251477 Msa1342990:five_prime_UTR 25.0%
! ATATTAAGTAAGAAAGCTGT+TGG + tig0006056:251616-251635 None:intergenic 25.0%
!!! TTTTTAGCAAAACAGAAACT+TGG + tig0006056:251796-251815 None:intergenic 25.0%
! TCATCAAAGAAAATCAATAG+TGG - tig0006056:251817-251836 Msa1342990:five_prime_UTR 25.0%
! ATCTTCAAGAGAAAGTAAAT+GGG + tig0006056:252361-252380 None:intergenic 25.0%
! ATTTACTTTCTCTTGAAGAT+CGG - tig0006056:252361-252380 Msa1342990:five_prime_UTR 25.0%
TGTCAAGAATGGAAGATAAT+AGG + tig0006056:247217-247236 Msa1342980:intron 30.0%
ATAAAAACGCGTTATAGCTT+GGG + tig0006056:247352-247371 Msa1342980:intron 30.0%
AAAATTCAATGGCCATAATC+AGG - tig0006056:247591-247610 Msa1342990:CDS 30.0%
AAATTCAATGGCCATAATCA+GGG - tig0006056:247592-247611 Msa1342990:CDS 30.0%
! TCAGGGTTGTAAATTTTACA+AGG - tig0006056:247609-247628 Msa1342990:CDS 30.0%
! TTTGAAACAAGGTCTACAAA+TGG - tig0006056:247662-247681 Msa1342990:CDS 30.0%
TTTGTATGGAAATGGATAAG+TGG + tig0006056:248260-248279 None:intergenic 30.0%
! AGTGAGATTTTGTATGGAAA+TGG + tig0006056:248268-248287 None:intergenic 30.0%
!! TTTTCTCATGGTGCTAATAA+TGG - tig0006056:248635-248654 Msa1342990:intron 30.0%
GGTAAATAATCACCTGATAA+AGG + tig0006056:248862-248881 None:intergenic 30.0%
TTTACATAACAAGTGAGTGA+AGG + tig0006056:248883-248902 None:intergenic 30.0%
! TCAATAATTTTGTGCTCAAG+TGG - tig0006056:248915-248934 Msa1342990:intron 30.0%
! GTTTGCTAGAAATTGTAGAA+TGG - tig0006056:248937-248956 Msa1342990:intron 30.0%
TTGCTAGAAATTGTAGAATG+GGG - tig0006056:248939-248958 Msa1342990:intron 30.0%
GTCACAAACAATGTATAAAG+AGG + tig0006056:249091-249110 None:intergenic 30.0%
TTATACATTGTTTGTGACTC+TGG - tig0006056:249093-249112 Msa1342990:CDS 30.0%
TGAAACTGAATCTCGTTATT+AGG - tig0006056:249202-249221 Msa1342990:intron 30.0%
TATTCAATCATTTACAGGCT+TGG - tig0006056:249519-249538 Msa1342990:intron 30.0%
! ACACAAAGTATTACAGCATT+AGG + tig0006056:249553-249572 None:intergenic 30.0%
TTATGCCTTGAATTAGGATA+AGG - tig0006056:249612-249631 Msa1342990:intron 30.0%
AATCACCTTATCCTAATTCA+AGG + tig0006056:249620-249639 None:intergenic 30.0%
TTCTGTGATAAACCATTTGA+AGG - tig0006056:249641-249660 Msa1342990:intron 30.0%
TCTGTGATAAACCATTTGAA+GGG - tig0006056:249642-249661 Msa1342990:intron 30.0%
! AAAATTTGTTTAAGGGAACG+AGG + tig0006056:249790-249809 None:intergenic 30.0%
! TCGTTCCCTTAAACAAATTT+TGG - tig0006056:249789-249808 Msa1342990:intron 30.0%
! CGTTGCCAAAATTTGTTTAA+GGG + tig0006056:249797-249816 None:intergenic 30.0%
! ACGTTGCCAAAATTTGTTTA+AGG + tig0006056:249798-249817 None:intergenic 30.0%
CTCTCTATTTCAATATGTAC+CGG + tig0006056:250274-250293 None:intergenic 30.0%
ACATATTGAAATAGAGAGGA+AGG - tig0006056:250276-250295 Msa1342990:intron 30.0%
CATATTGAAATAGAGAGGAA+GGG - tig0006056:250277-250296 Msa1342990:intron 30.0%
ATATTGAAATAGAGAGGAAG+GGG - tig0006056:250278-250297 Msa1342990:intron 30.0%
AATTATTTATCACTCGTGCA+GGG - tig0006056:250304-250323 Msa1342990:intron 30.0%
AATTAGAGAATGACAAGTTC+AGG + tig0006056:250549-250568 None:intergenic 30.0%
! TCTAATTTTCTGTGTCATGT+AGG - tig0006056:250562-250581 Msa1342990:intron 30.0%
AACATGTCAATGATATTGGT+AGG - tig0006056:250794-250813 Msa1342990:intron 30.0%
CCATACGATAAAAGATATCA+CGG + tig0006056:250832-250851 None:intergenic 30.0%
! CGTGATATCTTTTATCGTAT+GGG - tig0006056:250830-250849 Msa1342990:intron 30.0%
!! TTTATTATTTGCTGTGATCG+CGG - tig0006056:250921-250940 Msa1342990:intron 30.0%
ATGAGTTATCAAACTTCAGA+GGG + tig0006056:251031-251050 None:intergenic 30.0%
TATGAGTTATCAAACTTCAG+AGG + tig0006056:251032-251051 None:intergenic 30.0%
!!! AGTTTTTTTGCTTTACTACG+AGG - tig0006056:251087-251106 Msa1342990:CDS 30.0%
! TGTCAATATCAGGATACTTT+TGG - tig0006056:251212-251231 Msa1342990:intron 30.0%
! TATGAAATCAGTTTTCAGCA+GGG + tig0006056:251369-251388 None:intergenic 30.0%
! TTATGAAATCAGTTTTCAGC+AGG + tig0006056:251370-251389 None:intergenic 30.0%
ATTGAAAAACCATATTTGGC+AGG + tig0006056:251398-251417 None:intergenic 30.0%
! AAATGCAACAAGAGTACAAA+TGG + tig0006056:251435-251454 None:intergenic 30.0%
CTCTTGTTGCATTTGTTTAT+TGG - tig0006056:251441-251460 Msa1342990:five_prime_UTR 30.0%
!! CATTAAGTAGGTTGATTAGT+AGG - tig0006056:251490-251509 Msa1342990:five_prime_UTR 30.0%
ATTTCCTACATGTGCTAATT+GGG - tig0006056:251582-251601 Msa1342990:five_prime_UTR 30.0%
TCCTTCTGTTACAACTATTA+AGG - tig0006056:251692-251711 Msa1342990:five_prime_UTR 30.0%
ACCTTAATAGTTGTAACAGA+AGG + tig0006056:251696-251715 None:intergenic 30.0%
! AAACTTGGCATGAATGTTTT+GGG + tig0006056:251781-251800 None:intergenic 30.0%
TTGTATGAAACTCACAAAAG+AGG - tig0006056:252110-252129 Msa1342990:five_prime_UTR 30.0%
TGTATGAAACTCACAAAAGA+GGG - tig0006056:252111-252130 Msa1342990:five_prime_UTR 30.0%
GATACTAAGAAAACATAGAC+TGG + tig0006056:252221-252240 None:intergenic 30.0%
TTGCTACATTCTACATCTAT+TGG - tig0006056:252251-252270 Msa1342990:five_prime_UTR 30.0%
TGCTACATTCTACATCTATT+GGG - tig0006056:252252-252271 Msa1342990:five_prime_UTR 30.0%
GATCTTCAAGAGAAAGTAAA+TGG + tig0006056:252362-252381 None:intergenic 30.0%
AGCAATTGAACTGTCAAGAA+TGG + tig0006056:247228-247247 Msa1342980:intron 35.0%
CTTTAATCTCGAATGAGTTC+TGG + tig0006056:247325-247344 Msa1342980:intron 35.0%
CATAAAAACGCGTTATAGCT+TGG + tig0006056:247353-247372 Msa1342980:intron 35.0%
! TAACGCGTTTTTATGAGAAG+AGG - tig0006056:247358-247377 Msa1342990:three_prime_UTR 35.0%
TTAGAAACACGCTATAGCTT+CGG + tig0006056:247411-247430 Msa1342980:intron 35.0%
! AGCTATAGCGTGTTTCTAAA+CGG - tig0006056:247412-247431 Msa1342990:three_prime_UTR 35.0%
! TTTTGATAGAAGGTGGAGAA+AGG - tig0006056:247502-247521 Msa1342990:three_prime_UTR 35.0%
CGTAGACAACAAACAAAGTT+CGG + tig0006056:247714-247733 Msa1342980:CDS 35.0%
TAGAGAAGTTCCAAGTACAA+CGG - tig0006056:247829-247848 Msa1342990:intron 35.0%
! ATTTTGTTCTTGCGCCAATT+TGG - tig0006056:248095-248114 Msa1342990:intron 35.0%
ATGGAAATGGATAAGTGGAA+GGG + tig0006056:248255-248274 None:intergenic 35.0%
TATGGAAATGGATAAGTGGA+AGG + tig0006056:248256-248275 None:intergenic 35.0%
!! CTTGTTTTCTTATGTCACAG+AGG - tig0006056:248799-248818 Msa1342990:intron 35.0%
!! GGACAATTTAAGTTGCAAGT+CGG + tig0006056:249070-249089 None:intergenic 35.0%
AACTGAATCTCGTTATTAGG+TGG - tig0006056:249205-249224 Msa1342990:intron 35.0%
TCTGAATTGTCATGCATCAT+GGG + tig0006056:249309-249328 None:intergenic 35.0%
TTCTGAATTGTCATGCATCA+TGG + tig0006056:249310-249329 None:intergenic 35.0%
TCTTCTACCCAAAGACAAAA+AGG - tig0006056:249485-249504 Msa1342990:intron 35.0%
CTTCTACCCAAAGACAAAAA+GGG - tig0006056:249486-249505 Msa1342990:intron 35.0%
! AACCATCCCTTTTTGTCTTT+GGG + tig0006056:249495-249514 None:intergenic 35.0%
ATGCTGTAATACTTTGTGTG+AGG - tig0006056:249554-249573 Msa1342990:intron 35.0%
ATACTTTGTGTGAGGTTTCA+AGG - tig0006056:249562-249581 Msa1342990:intron 35.0%
! GGTTTTTGACAAAGTTGTCA+AGG - tig0006056:249583-249602 Msa1342990:intron 35.0%
CTGTGATAAACCATTTGAAG+GGG - tig0006056:249643-249662 Msa1342990:intron 35.0%
TGTGATAAACCATTTGAAGG+GGG - tig0006056:249644-249663 Msa1342990:intron 35.0%
!!! ATTAGTTTTCCCCCTTCAAA+TGG + tig0006056:249656-249675 None:intergenic 35.0%
! CAGTGTCATTGAAATGATTG+AGG + tig0006056:249825-249844 None:intergenic 35.0%
! ATCACGTTTTTGCCTAAGAA+AGG + tig0006056:249871-249890 None:intergenic 35.0%
!! CTTGGTAGCTTTATGAAATC+TGG - tig0006056:249908-249927 Msa1342990:intron 35.0%
ATCAGAATCAAGACAGTGAT+CGG - tig0006056:250214-250233 Msa1342990:intron 35.0%
CGGTACATATTGAAATAGAG+AGG - tig0006056:250272-250291 Msa1342990:intron 35.0%
TATTGAAATAGAGAGGAAGG+GGG - tig0006056:250279-250298 Msa1342990:intron 35.0%
GAATTATTTATCACTCGTGC+AGG - tig0006056:250303-250322 Msa1342990:intron 35.0%
! TCAAAAGTATGTACCAGAGA+TGG - tig0006056:250587-250606 Msa1342990:intron 35.0%
! CAAAAGTATGTACCAGAGAT+GGG - tig0006056:250588-250607 Msa1342990:intron 35.0%
TACAACAGTTTCGTTCACTT+GGG - tig0006056:250659-250678 Msa1342990:intron 35.0%
! CCGTGATATCTTTTATCGTA+TGG - tig0006056:250829-250848 Msa1342990:intron 35.0%
AAAGATATTGTTGCACTGTC+TGG - tig0006056:250863-250882 Msa1342990:CDS 35.0%
AAGATATTGTTGCACTGTCT+GGG - tig0006056:250864-250883 Msa1342990:CDS 35.0%
! ATAAAGTGTCCTGCCAAATA+TGG - tig0006056:251386-251405 Msa1342990:five_prime_UTR 35.0%
TGGAACTCATTGCATTAAGT+AGG - tig0006056:251478-251497 Msa1342990:five_prime_UTR 35.0%
AACATTGTGATAATCGCAGA+TGG + tig0006056:251555-251574 None:intergenic 35.0%
GATTTCCTACATGTGCTAAT+TGG - tig0006056:251581-251600 Msa1342990:five_prime_UTR 35.0%
AGATATGAGCTCTTTCTACT+TGG - tig0006056:251641-251660 Msa1342990:five_prime_UTR 35.0%
AGACCAACGTATTAAGTAGT+TGG + tig0006056:251667-251686 None:intergenic 35.0%
! GAAACTTGGCATGAATGTTT+TGG + tig0006056:251782-251801 None:intergenic 35.0%
TCTAATTCTAATTCTCCCTC+TGG - tig0006056:251922-251941 Msa1342990:five_prime_UTR 35.0%
CATAAGAAACTTTCAGAGCT+TGG - tig0006056:251984-252003 Msa1342990:five_prime_UTR 35.0%
GTTATGATGCTGCTCATAAT+TGG + tig0006056:252311-252330 None:intergenic 35.0%
TTTCTCTTGAAGATCGGAAA+AGG - tig0006056:252367-252386 Msa1342990:five_prime_UTR 35.0%
CTTGACAGTTCAATTGCTTG+TGG - tig0006056:247230-247249 Msa1342990:three_prime_UTR 40.0%
! TATAGCGTGTTTCTAAACGG+AGG - tig0006056:247415-247434 Msa1342990:three_prime_UTR 40.0%
! GAAGTCGCGTTTTTGATAGA+AGG - tig0006056:247492-247511 Msa1342990:three_prime_UTR 40.0%
TCTCCAACGAAGAGAATCAA+TGG - tig0006056:247538-247557 Msa1342990:three_prime_UTR 40.0%
!! TCACCATTGATTCTCTTCGT+TGG + tig0006056:247544-247563 Msa1342980:intron 40.0%
TTGTCTACGATTGTGAGTGT+TGG - tig0006056:247725-247744 Msa1342990:CDS 40.0%
AAGTTATCCTCCGTTGTACT+TGG + tig0006056:247842-247861 None:intergenic 40.0%
TGGCGCAAGAACAAAATTGA+GGG + tig0006056:248092-248111 None:intergenic 40.0%
TTGGCGCAAGAACAAAATTG+AGG + tig0006056:248093-248112 None:intergenic 40.0%
AACAGACCCATCTTCCAAAT+TGG + tig0006056:248112-248131 None:intergenic 40.0%
ATGGATAAGTGGAAGGGAAT+GGG + tig0006056:248249-248268 None:intergenic 40.0%
AATGGATAAGTGGAAGGGAA+TGG + tig0006056:248250-248269 None:intergenic 40.0%
! GGTGAGAGTGAGATTTTGTA+TGG + tig0006056:248274-248293 None:intergenic 40.0%
TTCGTTCTCTCCGATAACAA+TGG - tig0006056:248308-248327 Msa1342990:intron 40.0%
TACTCTGAGTCTACTACTAC+CGG + tig0006056:248339-248358 None:intergenic 40.0%
! AGTAGACTCAGAGTATCTCA+AGG - tig0006056:248344-248363 Msa1342990:intron 40.0%
TTGATTCAGTTGGCATGATG+CGG - tig0006056:248550-248569 Msa1342990:intron 40.0%
TATGATGCAAAGACCAAGAC+AGG - tig0006056:248578-248597 Msa1342990:intron 40.0%
! GTGGACCTAATGGTTCTATT+CGG - tig0006056:248600-248619 Msa1342990:intron 40.0%
TCGTTCCGAATAGAACCATT+AGG + tig0006056:248608-248627 None:intergenic 40.0%
! TAATGGTTCTATTCGGAACG+AGG - tig0006056:248607-248626 Msa1342990:intron 40.0%
! AACGAGGAAGAGTTTTCTCA+TGG - tig0006056:248623-248642 Msa1342990:intron 40.0%
AGGTCTGCATATGAGATCTT+GGG + tig0006056:248842-248861 None:intergenic 40.0%
AAGGTCTGCATATGAGATCT+TGG + tig0006056:248843-248862 None:intergenic 40.0%
CTCATATGCAGACCTTTATC+AGG - tig0006056:248847-248866 Msa1342990:CDS 40.0%
AAGTCGGAAGTAGCAGAAAT+AGG + tig0006056:249054-249073 None:intergenic 40.0%
ACTCTGGACACTCAAAACTT+TGG - tig0006056:249109-249128 Msa1342990:intron 40.0%
CTCTGGACACTCAAAACTTT+GGG - tig0006056:249110-249129 Msa1342990:intron 40.0%
! AGGGCACTAATCTAAGCAAA+GGG + tig0006056:249265-249284 None:intergenic 40.0%
GAAAGAGCTTGTGTGTAACA+GGG + tig0006056:249284-249303 None:intergenic 40.0%
TACCCAAAGACAAAAAGGGA+TGG - tig0006056:249490-249509 Msa1342990:intron 40.0%
! CAACCATCCCTTTTTGTCTT+TGG + tig0006056:249496-249515 None:intergenic 40.0%
GTCATTGAAATGATTGAGGC+AGG + tig0006056:249821-249840 None:intergenic 40.0%
ACTACCAACAAGCCTTTCTT+AGG - tig0006056:249856-249875 Msa1342990:intron 40.0%
TTTGCCTAAGAAAGGCTTGT+TGG + tig0006056:249863-249882 None:intergenic 40.0%
TTGTTGCAGTTGAGGTTACT+GGG - tig0006056:250447-250466 Msa1342990:intron 40.0%
! AACACACCTTGTTTAGCATC+AGG + tig0006056:250620-250639 None:intergenic 40.0%
GTACAACAGTTTCGTTCACT+TGG - tig0006056:250658-250677 Msa1342990:intron 40.0%
AGATATTGTTGCACTGTCTG+GGG - tig0006056:250865-250884 Msa1342990:CDS 40.0%
TGCTTAAACTTCCAACAGAC+AGG - tig0006056:251253-251272 Msa1342990:intron 40.0%
GCTTAAACTTCCAACAGACA+GGG - tig0006056:251254-251273 Msa1342990:intron 40.0%
TCAACATAACGGCGAAATTC+AGG + tig0006056:251294-251313 None:intergenic 40.0%
TCGCATACAGCTCAACATAA+CGG + tig0006056:251305-251324 None:intergenic 40.0%
TTATGTTGAGCTGTATGCGA+AGG - tig0006056:251305-251324 Msa1342990:CDS 40.0%
AGCTGTATGCGAAGGTAATT+GGG - tig0006056:251313-251332 Msa1342990:CDS 40.0%
TGGCCAACTACTTAATACGT+TGG - tig0006056:251661-251680 Msa1342990:five_prime_UTR 40.0%
!! TTGGCATGAATGTTTTGGGT+AGG + tig0006056:251777-251796 None:intergenic 40.0%
GAGTTTCATACAAGTAACCG+AGG + tig0006056:252103-252122 None:intergenic 40.0%
TTTGATCTGTTCAGCTCTGT+TGG - tig0006056:252142-252161 Msa1342990:five_prime_UTR 40.0%
AACCCAATACTGCTCGTTAT+GGG + tig0006056:252185-252204 None:intergenic 40.0%
! GTCGCGTTTTTGATAGAAGG+TGG - tig0006056:247495-247514 Msa1342990:three_prime_UTR 45.0%
AGAAGTTCCAAGTACAACGG+AGG - tig0006056:247832-247851 Msa1342990:intron 45.0%
TCTTGCGCCAATTTGGAAGA+TGG - tig0006056:248102-248121 Msa1342990:intron 45.0%
CTTGCGCCAATTTGGAAGAT+GGG - tig0006056:248103-248122 Msa1342990:intron 45.0%
!! ACGTGGTGGGATTGGTTTAT+GGG + tig0006056:248156-248175 None:intergenic 45.0%
ATAAGTGGAAGGGAATGGGT+GGG + tig0006056:248245-248264 None:intergenic 45.0%
GAACGAAACAAGAGTTGCAG+TGG + tig0006056:248295-248314 None:intergenic 45.0%
ACTCTGAGTCTACTACTACC+GGG + tig0006056:248338-248357 None:intergenic 45.0%
TACGCTAAGCGAAGCATGAT+GGG + tig0006056:248426-248445 None:intergenic 45.0%
TTACGCTAAGCGAAGCATGA+TGG + tig0006056:248427-248446 None:intergenic 45.0%
ATCATGCTTCGCTTAGCGTA+AGG - tig0006056:248426-248445 Msa1342990:CDS 45.0%
TCATGCTTCGCTTAGCGTAA+GGG - tig0006056:248427-248446 Msa1342990:CDS 45.0%
TGATTCAGTTGGCATGATGC+GGG - tig0006056:248551-248570 Msa1342990:intron 45.0%
! GTTTTTCGTGCAGTGTTAGC+TGG - tig0006056:249149-249168 Msa1342990:intron 45.0%
! CAGGGCACTAATCTAAGCAA+AGG + tig0006056:249266-249285 None:intergenic 45.0%
GGAAAGAGCTTGTGTGTAAC+AGG + tig0006056:249285-249304 None:intergenic 45.0%
GAATTGTCATGCATCATGGG+AGG + tig0006056:249306-249325 None:intergenic 45.0%
!! GCTTGTTGGTAGTATGAAGC+AGG + tig0006056:249849-249868 None:intergenic 45.0%
CATGTAATCTATGTCGCAGC+TGG + tig0006056:250377-250396 None:intergenic 45.0%
GTTGTTGCAGTTGAGGTTAC+TGG - tig0006056:250446-250465 Msa1342990:intron 45.0%
TGTTGCAGTTGAGGTTACTG+GGG - tig0006056:250448-250467 Msa1342990:intron 45.0%
TCAACTTTGTTCCCGGAAGA+AGG - tig0006056:250480-250499 Msa1342990:intron 45.0%
CAACTTTGTTCCCGGAAGAA+GGG - tig0006056:250481-250500 Msa1342990:intron 45.0%
TGCACAACATACCCTTCTTC+CGG + tig0006056:250495-250514 None:intergenic 45.0%
AAGTATGTACCAGAGATGGG+CGG - tig0006056:250591-250610 Msa1342990:intron 45.0%
! TCCAACAGACAGGGCTTTAT+TGG - tig0006056:251263-251282 Msa1342990:intron 45.0%
TCCAATAAAGCCCTGTCTGT+TGG + tig0006056:251267-251286 None:intergenic 45.0%
GAGCTGTATGCGAAGGTAAT+TGG - tig0006056:251312-251331 Msa1342990:CDS 45.0%
GTTGATTAGTAGGTCCTTCC+CGG - tig0006056:251500-251519 Msa1342990:five_prime_UTR 45.0%
TCCAAAGCACAATGCTTACC+GGG + tig0006056:251521-251540 None:intergenic 45.0%
CTCCAAAGCACAATGCTTAC+CGG + tig0006056:251522-251541 None:intergenic 45.0%
TCCTACATGTGCTAATTGGG+TGG - tig0006056:251585-251604 Msa1342990:five_prime_UTR 45.0%
TCCACCCAATTAGCACATGT+AGG + tig0006056:251589-251608 None:intergenic 45.0%
ATTCTAATTCTCCCTCTGGC+AGG - tig0006056:251926-251945 Msa1342990:five_prime_UTR 45.0%
!! AAAAGCGCTTTGTGCCAGTA+CGG + tig0006056:252051-252070 None:intergenic 45.0%
GAACCCAATACTGCTCGTTA+TGG + tig0006056:252186-252205 None:intergenic 45.0%
CTCTTGAAGATCGGAAAAGG+AGG - tig0006056:252370-252389 Msa1342990:five_prime_UTR 45.0%
!! CACGTGGTGGGATTGGTTTA+TGG + tig0006056:248157-248176 None:intergenic 50.0%
! TCTACTGACTGACACGTGGT+GGG + tig0006056:248169-248188 None:intergenic 50.0%
! TTCTACTGACTGACACGTGG+TGG + tig0006056:248170-248189 None:intergenic 50.0%
! CTCTTCTACTGACTGACACG+TGG + tig0006056:248173-248192 None:intergenic 50.0%
GATAAGTGGAAGGGAATGGG+TGG + tig0006056:248246-248265 None:intergenic 50.0%
TCCGATAACAATGGCGTTCC+CGG - tig0006056:248317-248336 Msa1342990:intron 50.0%
ACCGGGAACGCCATTGTTAT+CGG + tig0006056:248321-248340 None:intergenic 50.0%
TTCTGTTGGCGATGAGAGCA+CGG + tig0006056:248395-248414 None:intergenic 50.0%
! GATGGGAGCACAGTTTCTGT+TGG + tig0006056:248409-248428 None:intergenic 50.0%
GATGCAAAGACCAAGACAGG+TGG - tig0006056:248581-248600 Msa1342990:intron 50.0%
ACCAAGACAGGTGGACCTAA+TGG - tig0006056:248590-248609 Msa1342990:intron 50.0%
ACCATTAGGTCCACCTGTCT+TGG + tig0006056:248594-248613 None:intergenic 50.0%
! CAAGCTGGAAGCACAAAGGA+AGG + tig0006056:250421-250440 None:intergenic 50.0%
TCCTTTGTGCTTCCAGCTTG+CGG - tig0006056:250421-250440 Msa1342990:intron 50.0%
GTTGCAGTTGAGGTTACTGG+GGG - tig0006056:250449-250468 Msa1342990:intron 50.0%
CCGGGAACAAAGTTGACTGT+GGG + tig0006056:250476-250495 None:intergenic 50.0%
CCCACAGTCAACTTTGTTCC+CGG - tig0006056:250473-250492 Msa1342990:intron 50.0%
TCCGGGAACAAAGTTGACTG+TGG + tig0006056:250477-250496 None:intergenic 50.0%
GCACAACATACCCTTCTTCC+GGG + tig0006056:250494-250513 None:intergenic 50.0%
CGGCTTCCTGATGCTAAACA+AGG - tig0006056:250611-250630 Msa1342990:intron 50.0%
CAGTTTCGTTCACTTGGGCA+TGG - tig0006056:250664-250683 Msa1342990:intron 50.0%
AGAGCACATCCAGAGAGATC+AGG - tig0006056:250981-251000 Msa1342990:intron 50.0%
GAGCACATCCAGAGAGATCA+GGG - tig0006056:250982-251001 Msa1342990:intron 50.0%
CCATCAAACCCTGATCTCTC+TGG + tig0006056:250993-251012 None:intergenic 50.0%
CCAGAGAGATCAGGGTTTGA+TGG - tig0006056:250990-251009 Msa1342990:intron 50.0%
AAGCACAATGCTTACCGGGA+AGG + tig0006056:251517-251536 None:intergenic 50.0%
! TCCCGGTAAGCATTGTGCTT+TGG - tig0006056:251517-251536 Msa1342990:five_prime_UTR 50.0%
!! GTACTGGCACAAAGCGCTTT+TGG - tig0006056:252050-252069 Msa1342990:five_prime_UTR 50.0%
TGTTGGATGTCACGTCTGTG+TGG - tig0006056:252159-252178 Msa1342990:five_prime_UTR 50.0%
TGGCCCATAACGAGCAGTAT+TGG - tig0006056:252179-252198 Msa1342990:five_prime_UTR 50.0%
GGCCCATAACGAGCAGTATT+GGG - tig0006056:252180-252199 Msa1342990:five_prime_UTR 50.0%
GGTGTGACGATATCAACGCG+CGG - tig0006056:247460-247479 Msa1342990:three_prime_UTR 55.0%
CGATATCAACGCGCGGAGAA+AGG - tig0006056:247467-247486 Msa1342990:three_prime_UTR 55.0%
! TGACTGACACGTGGTGGGAT+TGG + tig0006056:248164-248183 None:intergenic 55.0%
CCTTTGTGCTTCCAGCTTGC+GGG - tig0006056:250422-250441 Msa1342990:intron 55.0%
!! TGCGGGTGTTGTTGCAGTTG+AGG - tig0006056:250439-250458 Msa1342990:intron 55.0%
! GATCAGGGTTTGATGGCCCT+TGG - tig0006056:250997-251016 Msa1342990:intron 55.0%
! GTTTGATGGCCCTTGGACAG+AGG - tig0006056:251004-251023 Msa1342990:intron 55.0%
TCAGAGGGTCCTCTGTCCAA+GGG + tig0006056:251016-251035 None:intergenic 55.0%
TTCAGAGGGTCCTCTGTCCA+AGG + tig0006056:251017-251036 None:intergenic 55.0%
ATTCTCCCTCTGGCAGGATG+AGG - tig0006056:251932-251951 Msa1342990:five_prime_UTR 55.0%
TGCATCCTCATCCTGCCAGA+GGG + tig0006056:251940-251959 None:intergenic 55.0%
ATGCATCCTCATCCTGCCAG+AGG + tig0006056:251941-251960 None:intergenic 55.0%
! TGGCTTTGCGCCAAGCTCAA+AGG - tig0006056:252004-252023 Msa1342990:five_prime_UTR 55.0%
GGAGCAGTTGCCTTTGAGCT+TGG + tig0006056:252017-252036 None:intergenic 55.0%
CTCAAAGGCAACTGCTCCTG+TGG - tig0006056:252019-252038 Msa1342990:five_prime_UTR 55.0%
TCCTGTGGATGCAACCGTAC+TGG - tig0006056:252034-252053 Msa1342990:five_prime_UTR 55.0%
GGAGCTGAAACATCCCGCAG+CGG - tig0006056:247379-247398 Msa1342990:three_prime_UTR 60.0%
AGTGGAAGGGAATGGGTGGG+TGG + tig0006056:248242-248261 None:intergenic 60.0%
! CCCGCAAGCTGGAAGCACAA+AGG + tig0006056:250425-250444 None:intergenic 60.0%
CTGCAACAACACCCGCAAGC+TGG + tig0006056:250436-250455 None:intergenic 60.0%
ATCAGGAAGCCGCCCATCTC+TGG + tig0006056:250603-250622 None:intergenic 60.0%
! ACTGTCTGGGGCACATACGC+TGG - tig0006056:250877-250896 Msa1342990:intron 60.0%
GCCAGTACGGTTGCATCCAC+AGG + tig0006056:252038-252057 None:intergenic 60.0%
AGTTGTAGCTGCCGCTGCAG+TGG - tig0006056:252073-252092 Msa1342990:five_prime_UTR 60.0%
ACCGAGGATCACCACTGCAG+CGG + tig0006056:252087-252106 None:intergenic 60.0%
! AGCTTCGGTCAGTGCCGCTG+CGG + tig0006056:247396-247415 Msa1342980:intron 65.0%
GCCGCTGCAGTGGTGATCCT+CGG - tig0006056:252083-252102 Msa1342990:five_prime_UTR 65.0%
! GCTTCGGTCAGTGCCGCTGC+GGG + tig0006056:247395-247414 Msa1342980:intron 70.0%
Chromosome Type Strat End Strand Name
tig0006056 gene 247206 252504 247206 ID=Msa1342990;Name=Msa1342990
tig0006056 mRNA 247206 252504 247206 ID=Msa1342990-mRNA-1;Parent=Msa1342990;Name=Msa1342990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1121|1|1|1|1|1|9|365|287
tig0006056 exon 247206 247762 247206 ID=Msa1342990-mRNA-1:exon:3889;Parent=Msa1342990-mRNA-1
tig0006056 exon 248384 248486 248384 ID=Msa1342990-mRNA-1:exon:3888;Parent=Msa1342990-mRNA-1
tig0006056 exon 248653 248732 248653 ID=Msa1342990-mRNA-1:exon:3887;Parent=Msa1342990-mRNA-1
tig0006056 exon 248812 248894 248812 ID=Msa1342990-mRNA-1:exon:3886;Parent=Msa1342990-mRNA-1
tig0006056 exon 249078 249126 249078 ID=Msa1342990-mRNA-1:exon:3885;Parent=Msa1342990-mRNA-1
tig0006056 exon 249208 249273 249208 ID=Msa1342990-mRNA-1:exon:3884;Parent=Msa1342990-mRNA-1
tig0006056 exon 250842 250891 250842 ID=Msa1342990-mRNA-1:exon:3883;Parent=Msa1342990-mRNA-1
tig0006056 exon 251027 251151 251027 ID=Msa1342990-mRNA-1:exon:3882;Parent=Msa1342990-mRNA-1
tig0006056 exon 251268 252504 251268 ID=Msa1342990-mRNA-1:exon:3881;Parent=Msa1342990-mRNA-1
tig0006056 five_prime_UTR 251384 252504 251384 ID=Msa1342990-mRNA-1:five_prime_utr;Parent=Msa1342990-mRNA-1
tig0006056 CDS 251268 251383 251268 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 251027 251151 251027 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 250842 250891 250842 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 249208 249273 249208 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 249078 249126 249078 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 248812 248894 248812 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 248653 248732 248653 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 248384 248486 248384 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 CDS 247571 247762 247571 ID=Msa1342990-mRNA-1:cds;Parent=Msa1342990-mRNA-1
tig0006056 three_prime_UTR 247206 247570 247206 ID=Msa1342990-mRNA-1:three_prime_utr;Parent=Msa1342990-mRNA-1
Gene Sequence

>Msa1342990

ATGGCGTTCCCGGTAGTAGTAGACTCAGAGTATCTCAAGGAAATCGAAAAAGCTCGTCGTGATCTCCGTGCTCTCATCGCCAACAGAAACTGTGCTCCCATCATGCTTCGCTTAGCTTGGCATGATGCGGGAACTTATGATGCAAAGACCAAGACAGGTGGACCTAATGGTTCTATTCGGAACGAGGAAGAGTTTTCTCATGGTGCTAATAATGGATTGAAGAAAGCTATTGATTTTTGCGAGGAAGTGAAAGCAAAACATCCCAAGATCTCATATGCAGACCTTTATCAGCTTGCGGGTGTTGTTGCAGTTGAGGTTACTGGGGGTCCCACAGTCAACTTTGTTCCCGGAAGAAGGGATTCAAAAGTATGTACCAGAGATGGGCGGCTTCCTGATGCTAAACAAGGTGTGTCGCATCTCCGTGATATCTTTTATCGTATGGGCTTGACTGACAAAGATATTGTTGCACTGTCTGGGGCACATACGCTGGGAAGAGCACATCCAGAGAGATCAGGGTTTGATGGCCCTTGGACAGAGGACCCTCTGAAGTTTGATAACTCATATTTTCAGATACTTTTGGAAGAAGATTCTGCAGCTCTGCTTAAACTTCCAACAGACAGGGCTTTATTGGATGATCCTGAATTTCGCCGTTATGTTGAGCTGTATGCGAAGGATGAGGATGCATTTTTTCGAGATTATGCTGAATCACATAAGAAACTTTCAGAGCTTGGCTTTGCGCCAAGCTCAAAGGCAACTGCTCCTGTGGATGCAACCGTACTGGCACAAAGCGCTTTTGGAGTTGTAGCTGCCGCTGCAGTGGTGATCCTCGGTTACTTGTATGAAACTCACAAAAGAGGGAAGTAG
Protein sequence

>Msa1342990

MAFPVVVDSEYLKEIEKARRDLRALIANRNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEFSHGANNGLKKAIDFCEEVKAKHPKISYADLYQLAGVVAVEVTGGPTVNFVPGRRDSKVCTRDGRLPDAKQGVSHLRDIFYRMGLTDKDIVALSGAHTLGRAHPERSGFDGPWTEDPLKFDNSYFQILLEEDSAALLKLPTDRALLDDPEFRRYVELYAKDEDAFFRDYAESHKKLSELGFAPSSKATAPVDATVLAQSAFGVVAAAAVVILGYLYETHKRGK*