AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544710 MtrunA17_Chr4g0040451 96.347 219 8 0 1 219 1 219 1.63e-158 437
Msa0544710 MtrunA17_Chr6g0465041 29.932 147 97 2 79 219 77 223 3.10e-16 74.7
Msa0544710 MtrunA17_Chr1g0207521 25.547 137 101 1 79 214 111 247 7.73e-13 65.9
Msa0544710 MtrunA17_Chr7g0255351 28.415 183 112 3 37 219 92 255 4.85e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544710 AT2G42770.1 71.739 184 49 1 39 219 49 232 1.02e-94 276
Msa0544710 AT5G43140.1 30.282 142 98 1 79 219 108 249 7.66e-18 79.7
Msa0544710 AT4G33905.1 29.927 137 95 1 79 214 112 248 4.11e-15 72.4
Msa0544710 AT2G14860.1 26.027 146 106 2 76 219 99 244 8.81e-13 65.9

Find 94 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCCCACTTTACTTTA+TGG 0.111803 4_1:+33611067 Msa0544710:CDS
TCTTTGCATGGAACAATTTA+TGG 0.112525 4_1:+33611002 Msa0544710:CDS
TGTCAATGGGCTCAATATTT+TGG 0.126119 4_1:+33612218 Msa0544710:CDS
CTGTCAGTGTATTAAATTTC+TGG 0.134675 4_1:+33611193 Msa0544710:CDS
TTCCAATTAAGACTTATATT+TGG 0.167204 4_1:+33612544 Msa0544710:three_prime_UTR
TTGGGGAATTGAAGAAAATT+TGG 0.189452 4_1:+33609940 Msa0544710:five_prime_UTR
CACATGGACCCAACACAATT+TGG 0.192502 4_1:-33610967 None:intergenic
TCCCAAATATAAGTCTTAAT+TGG 0.200883 4_1:-33612546 None:intergenic
AACATTGCATGTGCTTAAAA+AGG 0.248373 4_1:+33612709 Msa0544710:three_prime_UTR
ATAATTTGAGTACATTATTA+TGG 0.248665 4_1:+33612568 Msa0544710:three_prime_UTR
TTGATGGAAATTCTTACTTT+TGG 0.263005 4_1:-33612790 None:intergenic
ACTGCCTCCCAGCATGTTTC+CGG 0.270902 4_1:-33612618 None:intergenic
CGCCGTCGAGAATCCGGTTT+CGG 0.272446 4_1:-33610203 None:intergenic
TGTCCAGAACCTAATGTTAA+AGG 0.277336 4_1:+33610817 Msa0544710:CDS
CGGAGGTGGTTATCAGTTTC+CGG 0.280297 4_1:+33610265 Msa0544710:CDS
CGTCGGATTCGTTCGAATTC+GGG 0.285221 4_1:+33610224 Msa0544710:CDS
GGAATGGACGCGATTGGATT+TGG 0.285779 4_1:+33610149 Msa0544710:exon
TCCAATTAAGACTTATATTT+GGG 0.294414 4_1:+33612545 Msa0544710:three_prime_UTR
GCGTCGGATTCGTTCGAATT+CGG 0.299605 4_1:+33610223 Msa0544710:CDS
GTTAATTGTTGATCTGATTT+CGG 0.300060 4_1:+33612590 Msa0544710:three_prime_UTR
AACATTAGGTTCTGGACATT+TGG 0.316911 4_1:-33610812 None:intergenic
GGTTCTGGACATTTGGCTTT+GGG 0.347006 4_1:-33610805 None:intergenic
GTCACCCTTGGAATGATCTT+TGG 0.351053 4_1:+33612649 Msa0544710:three_prime_UTR
CTGATTCTGATGACCCAATT+GGG 0.351503 4_1:+33609922 Msa0544710:five_prime_UTR
GCCGTCGAGAATCCGGTTTC+GGG 0.360252 4_1:-33610202 None:intergenic
ACAAAAGCTTTCAGAGCTTC+CGG 0.364498 4_1:+33611027 Msa0544710:CDS
GCTGCCTCGCTTACTCTTAC+TGG 0.366616 4_1:+33610305 Msa0544710:CDS
ACTTGTTCATAGTTGATGAT+AGG 0.367450 4_1:-33612249 None:intergenic
GAATGGACGCGATTGGATTT+GGG 0.369109 4_1:+33610150 Msa0544710:exon
AGGTTCTGGACATTTGGCTT+TGG 0.375932 4_1:-33610806 None:intergenic
AACATAATACCTTTAACATT+AGG 0.377053 4_1:-33610826 None:intergenic
GGACCAGATGAACTATTGTT+TGG 0.386868 4_1:+33612730 Msa0544710:three_prime_UTR
CGTTCGAATTCGGGTTCACC+TGG 0.399031 4_1:+33610233 Msa0544710:CDS
CAGAGTGGCTTTCATGTCAA+TGG 0.403097 4_1:+33612204 Msa0544710:CDS
TAATAGAGAGATTATTATAT+AGG 0.404073 4_1:+33612513 Msa0544710:three_prime_UTR
ATACCTTTAACATTAGGTTC+TGG 0.414480 4_1:-33610820 None:intergenic
TGGTATGTTACAATACTTGT+TGG 0.424655 4_1:+33612669 Msa0544710:three_prime_UTR
TAACCAAACAATAGTTCATC+TGG 0.426023 4_1:-33612733 None:intergenic
ATCCGACGCCGTCGAGAATC+CGG 0.443852 4_1:-33610209 None:intergenic
CCTGGTTCCGCCGTCGGAGG+TGG 0.446747 4_1:+33610251 Msa0544710:CDS
TTACTAAACCAAATTGTGTT+GGG 0.447561 4_1:+33610959 Msa0544710:CDS
CAGAAATTTAATACACTGAC+AGG 0.448515 4_1:-33611192 None:intergenic
GCAGTTAGCGCCTGCTTCAC+CGG 0.450880 4_1:-33610284 None:intergenic
GGAGACAATGGTCAAGCAAC+TGG 0.451380 4_1:-33610784 None:intergenic
ACTGATTCTGATGACCCAAT+TGG 0.452279 4_1:+33609921 Msa0544710:five_prime_UTR
TTGTGGTTTAGAATTGTTAA+CGG 0.452285 4_1:+33609966 Msa0544710:five_prime_UTR
CCTCCTTTGCTTTATTCCAC+CGG 0.453155 4_1:-33610352 None:intergenic
CGGAAAGACCGGAAACATGC+TGG 0.458895 4_1:+33612610 Msa0544710:three_prime_UTR
GACATGAAAGCCACTCTGGC+TGG 0.468430 4_1:-33612199 None:intergenic
CATTGACATGAAAGCCACTC+TGG 0.472403 4_1:-33612203 None:intergenic
CTGGAAGTGGGACCCGAAAC+CGG 0.475595 4_1:+33610190 Msa0544710:CDS
GGATGGTGAAAATGCCTCTC+AGG 0.482368 4_1:+33610373 Msa0544710:CDS
GGTTCACCTGGTTCCGCCGT+CGG 0.491942 4_1:+33610245 Msa0544710:CDS
TTTACTAAACCAAATTGTGT+TGG 0.492300 4_1:+33610958 Msa0544710:CDS
GACGCGATTGGATTTGGGAG+TGG 0.493904 4_1:+33610155 Msa0544710:CDS
GCTCTGCGAATGACTTCCTA+TGG 0.499911 4_1:+33610725 Msa0544710:CDS
TGAAGAAAATTTGGTGCTTG+TGG 0.504789 4_1:+33609949 Msa0544710:five_prime_UTR
TGATCTGATTTCGGAAAGAC+CGG 0.506115 4_1:+33612599 Msa0544710:three_prime_UTR
TTATCAGTTTCCGGTGAAGC+AGG 0.513247 4_1:+33610274 Msa0544710:CDS
TGGTACCAGGCAAAAGAACC+AGG 0.517678 4_1:-33610764 None:intergenic
AGAGTGGCTTTCATGTCAAT+GGG 0.522920 4_1:+33612205 Msa0544710:CDS
CCACCTCCGACGGCGGAACC+AGG 0.528246 4_1:-33610251 None:intergenic
TTTGTACCATAAAGTAAAGT+GGG 0.532650 4_1:-33611073 None:intergenic
AAAGCCACTCTGGCTGGAAG+AGG 0.533546 4_1:-33612193 None:intergenic
GTTTGTACCATAAAGTAAAG+TGG 0.534203 4_1:-33611074 None:intergenic
CATTTGGCTTTGGGAGACAA+TGG 0.544393 4_1:-33610796 None:intergenic
GGTGCCTCTTCCAGCCAGAG+TGG 0.561435 4_1:+33612189 Msa0544710:CDS
CTGATAACCACCTCCGACGG+CGG 0.561979 4_1:-33610258 None:intergenic
TCATTGCGGTTATCTTTGCA+TGG 0.564794 4_1:+33610990 Msa0544710:CDS
TGTTTGAAATTCTTACAATG+AGG 0.567069 4_1:+33612305 Msa0544710:three_prime_UTR
ATGGTCAAGCAACTGGTACC+AGG 0.567339 4_1:-33610777 None:intergenic
TCACCTGGTTCCGCCGTCGG+AGG 0.567431 4_1:+33610248 Msa0544710:CDS
AACCGGATTCTCGACGGCGT+CGG 0.567671 4_1:+33610207 Msa0544710:CDS
TGGAATAAAGCAAAGGAGGA+TGG 0.569766 4_1:+33610356 Msa0544710:CDS
TGCGAGGGAATGGACGCGAT+TGG 0.572598 4_1:+33610143 Msa0544710:exon
CTATTGCTCAGCTCAGTAGC+CGG 0.584323 4_1:+33610333 Msa0544710:CDS
GGAAAGACCGGAAACATGCT+GGG 0.587992 4_1:+33612611 Msa0544710:three_prime_UTR
GCCATAGAAAAGAAATCCAT+AGG 0.590650 4_1:-33610741 None:intergenic
ACCCGAAACCGGATTCTCGA+CGG 0.607175 4_1:+33610201 Msa0544710:CDS
ACATACCAAAGATCATTCCA+AGG 0.607226 4_1:-33612654 None:intergenic
AAGATAACCGCAATGACACA+TGG 0.607959 4_1:-33610983 None:intergenic
GTCACCAGTAAGAGTAAGCG+AGG 0.612756 4_1:-33610309 None:intergenic
TGATTCTGATGACCCAATTG+GGG 0.625195 4_1:+33609923 Msa0544710:five_prime_UTR
AAACTGATAACCACCTCCGA+CGG 0.632014 4_1:-33610261 None:intergenic
TTGCTCAGCTCAGTAGCCGG+TGG 0.635783 4_1:+33610336 Msa0544710:CDS
ATTTGACACTCTGAAAGCTG+TGG 0.644992 4_1:+33612437 Msa0544710:three_prime_UTR
CAATATTTCACTTACCTGAG+AGG 0.646398 4_1:-33610387 None:intergenic
CCGGTGGAATAAAGCAAAGG+AGG 0.649184 4_1:+33610352 Msa0544710:CDS
TAGCCGGTGGAATAAAGCAA+AGG 0.661503 4_1:+33610349 Msa0544710:CDS
GTTGGGTCCATGTGTCATTG+CGG 0.690123 4_1:+33610976 Msa0544710:CDS
CATACCAAAGATCATTCCAA+GGG 0.694101 4_1:-33612653 None:intergenic
AGAAATTTAATACACTGACA+GGG 0.717165 4_1:-33611191 None:intergenic
GGTACCAGGCAAAAGAACCA+GGG 0.724550 4_1:-33610763 None:intergenic
AAGACCGGAAACATGCTGGG+AGG 0.755788 4_1:+33612614 Msa0544710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAAAATCGAATTTTTA+TGG - chr4_1:33609995-33610014 None:intergenic 10.0%
!!! TAAAATATAGTATATTGATT+AGG - chr4_1:33611700-33611719 None:intergenic 10.0%
!!! ACAAAATAAGCTTATTTTTT+AGG + chr4_1:33610546-33610565 Msa0544710:intron 15.0%
!! TATGAAATATTAACCAAAAA+AGG + chr4_1:33610651-33610670 Msa0544710:intron 15.0%
!! ATATGTGTGTTTATATAAAA+CGG - chr4_1:33611318-33611337 None:intergenic 15.0%
!! TTTAAGAAAATAGAAGTAAT+TGG + chr4_1:33611921-33611940 Msa0544710:intron 15.0%
!! TAATAGAGAGATTATTATAT+AGG + chr4_1:33612513-33612532 Msa0544710:three_prime_UTR 15.0%
!! ATAATTTGAGTACATTATTA+TGG + chr4_1:33612568-33612587 Msa0544710:three_prime_UTR 15.0%
!!! TTTTAGTTAATTACATTTGA+TGG - chr4_1:33612809-33612828 None:intergenic 15.0%
!! AACATAATACCTTTAACATT+AGG - chr4_1:33610829-33610848 None:intergenic 20.0%
!! TAAGAAAAAGTTGCATATAT+AGG - chr4_1:33611391-33611410 None:intergenic 20.0%
!!! TAAGTAATATAAGTGTCATT+TGG + chr4_1:33611644-33611663 Msa0544710:intron 20.0%
!!! TTCCACTTTTATAATTTGTT+TGG + chr4_1:33612352-33612371 Msa0544710:intron 20.0%
!! GTTAATTAATCTACAAATAC+AGG - chr4_1:33612397-33612416 None:intergenic 20.0%
!! TTCCAATTAAGACTTATATT+TGG + chr4_1:33612544-33612563 Msa0544710:three_prime_UTR 20.0%
!! TCCAATTAAGACTTATATTT+GGG + chr4_1:33612545-33612564 Msa0544710:three_prime_UTR 20.0%
!! TTGTGGTTTAGAATTGTTAA+CGG + chr4_1:33609966-33609985 Msa0544710:five_prime_UTR 25.0%
! ACATTATCACTGAAAATTGA+AGG - chr4_1:33610415-33610434 None:intergenic 25.0%
! ATAGTGTAAGTATCTCTATT+AGG + chr4_1:33610443-33610462 Msa0544710:intron 25.0%
! TAGTGTAAGTATCTCTATTA+GGG + chr4_1:33610444-33610463 Msa0544710:intron 25.0%
! TATATTGTTGTGTTATCTAG+TGG + chr4_1:33610609-33610628 Msa0544710:intron 25.0%
! TAACCAAAAAAGGTTTCTTT+AGG + chr4_1:33610661-33610680 Msa0544710:intron 25.0%
! TTTACTAAACCAAATTGTGT+TGG + chr4_1:33610958-33610977 Msa0544710:CDS 25.0%
! TTACTAAACCAAATTGTGTT+GGG + chr4_1:33610959-33610978 Msa0544710:CDS 25.0%
! TTTGTACCATAAAGTAAAGT+GGG - chr4_1:33611076-33611095 None:intergenic 25.0%
! AGAAATTTAATACACTGACA+GGG - chr4_1:33611194-33611213 None:intergenic 25.0%
!! TAGATTATACCTTTTCACTA+GGG - chr4_1:33611367-33611386 None:intergenic 25.0%
! AACTGCAACTATAAGATAAA+GGG - chr4_1:33611546-33611565 None:intergenic 25.0%
! AAACTGCAACTATAAGATAA+AGG - chr4_1:33611547-33611566 None:intergenic 25.0%
! AAATCTTGAAGTTAAGCAAT+TGG - chr4_1:33611611-33611630 None:intergenic 25.0%
! TCCATATTAAGAAAATTAGG+CGG - chr4_1:33611797-33611816 None:intergenic 25.0%
! TCGTCCATATTAAGAAAATT+AGG - chr4_1:33611800-33611819 None:intergenic 25.0%
! TGTAGGTATAAATAGCTATT+AGG + chr4_1:33612026-33612045 Msa0544710:intron 25.0%
! GTAGGTATAAATAGCTATTA+GGG + chr4_1:33612027-33612046 Msa0544710:intron 25.0%
! CATACTTACTCTACTAATTA+AGG + chr4_1:33612068-33612087 Msa0544710:intron 25.0%
! TGATCATTCTACTAATTATC+TGG + chr4_1:33612094-33612113 Msa0544710:intron 25.0%
! ACTAATTATCTGGTTATTTG+TGG + chr4_1:33612104-33612123 Msa0544710:intron 25.0%
!!! TATTTTTATGGCTCTGTATA+GGG + chr4_1:33612165-33612184 Msa0544710:intron 25.0%
!! TGTTTGAAATTCTTACAATG+AGG + chr4_1:33612305-33612324 Msa0544710:three_prime_UTR 25.0%
! AGCCAAACAAATTATAAAAG+TGG - chr4_1:33612357-33612376 None:intergenic 25.0%
! AATCTACAAATACAGGATAA+TGG - chr4_1:33612390-33612409 None:intergenic 25.0%
! TCCCAAATATAAGTCTTAAT+TGG - chr4_1:33612549-33612568 None:intergenic 25.0%
! GTTAATTGTTGATCTGATTT+CGG + chr4_1:33612590-33612609 Msa0544710:three_prime_UTR 25.0%
!!! TACTTTTGGAATTAACCAAT+TGG - chr4_1:33612779-33612798 None:intergenic 25.0%
!! TTGATGGAAATTCTTACTTT+TGG - chr4_1:33612793-33612812 None:intergenic 25.0%
! TTTTCTTCAATTCCCCAATT+GGG - chr4_1:33609938-33609957 None:intergenic 30.0%
! ATTTTCTTCAATTCCCCAAT+TGG - chr4_1:33609939-33609958 None:intergenic 30.0%
TTGGGGAATTGAAGAAAATT+TGG + chr4_1:33609940-33609959 Msa0544710:five_prime_UTR 30.0%
TTATCTAGTGGTGAATACTT+TGG + chr4_1:33610621-33610640 Msa0544710:intron 30.0%
!!! CATCCTAAAGAAACCTTTTT+TGG - chr4_1:33610667-33610686 None:intergenic 30.0%
! TCCTATGGATTTCTTTTCTA+TGG + chr4_1:33610740-33610759 Msa0544710:CDS 30.0%
ATACCTTTAACATTAGGTTC+TGG - chr4_1:33610823-33610842 None:intergenic 30.0%
! CATCTATAAATGATGATGTC+TGG + chr4_1:33610850-33610869 Msa0544710:intron 30.0%
! GTTTAATTAACAGAAGCATG+AGG + chr4_1:33610872-33610891 Msa0544710:intron 30.0%
!!! TTTTTTATCGTTTCGTTGAC+AGG + chr4_1:33610934-33610953 Msa0544710:intron 30.0%
TCTTTGCATGGAACAATTTA+TGG + chr4_1:33611002-33611021 Msa0544710:CDS 30.0%
! GCATCTCTTTTGTATTTTTC+CGG - chr4_1:33611049-33611068 None:intergenic 30.0%
GTTTGTACCATAAAGTAAAG+TGG - chr4_1:33611077-33611096 None:intergenic 30.0%
AGTAAGTCACAATAACACTT+AGG - chr4_1:33611107-33611126 None:intergenic 30.0%
AACAGACAAATTACACAGAA+AGG - chr4_1:33611152-33611171 None:intergenic 30.0%
CAGAAATTTAATACACTGAC+AGG - chr4_1:33611195-33611214 None:intergenic 30.0%
CTGTCAGTGTATTAAATTTC+TGG + chr4_1:33611193-33611212 Msa0544710:CDS 30.0%
CAAGCAGAATATCAGATTTA+AGG - chr4_1:33611234-33611253 None:intergenic 30.0%
! CTAGATTATACCTTTTCACT+AGG - chr4_1:33611368-33611387 None:intergenic 30.0%
AAAAATGAACTAGCATGTCA+TGG - chr4_1:33611453-33611472 None:intergenic 30.0%
!!! GACATGCTAGTTCATTTTTT+AGG + chr4_1:33611454-33611473 Msa0544710:intron 30.0%
ACTGCAACTATAAGATAAAG+GGG - chr4_1:33611545-33611564 None:intergenic 30.0%
TTATAGTTGCAGTTTGCAAA+TGG + chr4_1:33611552-33611571 Msa0544710:intron 30.0%
! ACCGCCTAATTTTCTTAATA+TGG + chr4_1:33611793-33611812 Msa0544710:intron 30.0%
GTCTATAAGTATGGTTGTTA+GGG + chr4_1:33611836-33611855 Msa0544710:intron 30.0%
!!! TTGTTAGGGATTTTGTTGTT+TGG + chr4_1:33611850-33611869 Msa0544710:intron 30.0%
!!! TGTTAGGGATTTTGTTGTTT+GGG + chr4_1:33611851-33611870 Msa0544710:intron 30.0%
CTATACAGAGCCATAAAAAT+AGG - chr4_1:33612166-33612185 None:intergenic 30.0%
!!! CTATTTTTATGGCTCTGTAT+AGG + chr4_1:33612164-33612183 Msa0544710:intron 30.0%
!! ACTTGTTCATAGTTGATGAT+AGG - chr4_1:33612252-33612271 None:intergenic 30.0%
TGGTATGTTACAATACTTGT+TGG + chr4_1:33612669-33612688 Msa0544710:three_prime_UTR 30.0%
AACATTGCATGTGCTTAAAA+AGG + chr4_1:33612709-33612728 Msa0544710:three_prime_UTR 30.0%
TAACCAAACAATAGTTCATC+TGG - chr4_1:33612736-33612755 None:intergenic 30.0%
!! TGAAGAAAATTTGGTGCTTG+TGG + chr4_1:33609949-33609968 Msa0544710:five_prime_UTR 35.0%
CAATATTTCACTTACCTGAG+AGG - chr4_1:33610390-33610409 None:intergenic 35.0%
GCCATAGAAAAGAAATCCAT+AGG - chr4_1:33610744-33610763 None:intergenic 35.0%
!! AACATTAGGTTCTGGACATT+TGG - chr4_1:33610815-33610834 None:intergenic 35.0%
TGTCCAGAACCTAATGTTAA+AGG + chr4_1:33610817-33610836 Msa0544710:CDS 35.0%
ACAATAACACTTAGGCAATG+AGG - chr4_1:33611099-33611118 None:intergenic 35.0%
! TCTGTGTAATTTGTCTGTTC+AGG + chr4_1:33611153-33611172 Msa0544710:intron 35.0%
!!! TCTGTTCAGGTTTTAGATTC+TGG + chr4_1:33611166-33611185 Msa0544710:intron 35.0%
AATTCACTTCCCTAGTGAAA+AGG + chr4_1:33611355-33611374 Msa0544710:intron 35.0%
!!! TGTCTTGCATTTTAGAGTGA+GGG + chr4_1:33611575-33611594 Msa0544710:intron 35.0%
ACAGCAAAGGTCTATAAGTA+TGG + chr4_1:33611827-33611846 Msa0544710:intron 35.0%
GGTCTATAAGTATGGTTGTT+AGG + chr4_1:33611835-33611854 Msa0544710:intron 35.0%
!!! ACCTTCCTTGCCTATTTTTA+TGG + chr4_1:33612153-33612172 Msa0544710:intron 35.0%
!! TGTCAATGGGCTCAATATTT+TGG + chr4_1:33612218-33612237 Msa0544710:CDS 35.0%
!! AGAGTGTCAAATCTTTTGCA+GGG - chr4_1:33612429-33612448 None:intergenic 35.0%
CATACCAAAGATCATTCCAA+GGG - chr4_1:33612656-33612675 None:intergenic 35.0%
ACATACCAAAGATCATTCCA+AGG - chr4_1:33612657-33612676 None:intergenic 35.0%
! TTCAGCTTTTTGCAACCAAT+TGG + chr4_1:33612761-33612780 Msa0544710:three_prime_UTR 35.0%
! ACTGATTCTGATGACCCAAT+TGG + chr4_1:33609921-33609940 Msa0544710:five_prime_UTR 40.0%
CTGATTCTGATGACCCAATT+GGG + chr4_1:33609922-33609941 Msa0544710:five_prime_UTR 40.0%
TGATTCTGATGACCCAATTG+GGG + chr4_1:33609923-33609942 Msa0544710:five_prime_UTR 40.0%
! AGCATAAAACGCTGCGTTTT+TGG + chr4_1:33610069-33610088 Msa0544710:five_prime_UTR 40.0%
!! GGATTTGGGAGTGGATTTTT+CGG + chr4_1:33610164-33610183 Msa0544710:CDS 40.0%
!! GATTTGGGAGTGGATTTTTC+GGG + chr4_1:33610165-33610184 Msa0544710:CDS 40.0%
!!! ATTTTTCGGGTTCTGGAAGT+GGG + chr4_1:33610178-33610197 Msa0544710:CDS 40.0%
TGGAATAAAGCAAAGGAGGA+TGG + chr4_1:33610356-33610375 Msa0544710:CDS 40.0%
CAAAGAACACACATTTCAGC+TGG - chr4_1:33610526-33610545 None:intergenic 40.0%
!! GTGGTGAATACTTTGGAGTT+TGG + chr4_1:33610628-33610647 Msa0544710:intron 40.0%
AAGATAACCGCAATGACACA+TGG - chr4_1:33610986-33611005 None:intergenic 40.0%
TCATTGCGGTTATCTTTGCA+TGG + chr4_1:33610990-33611009 Msa0544710:CDS 40.0%
ACAAAAGCTTTCAGAGCTTC+CGG + chr4_1:33611027-33611046 Msa0544710:CDS 40.0%
GCTCTTCCCACTTTACTTTA+TGG + chr4_1:33611067-33611086 Msa0544710:CDS 40.0%
GTGAGTATCTTGTATCGAGT+TGG + chr4_1:33611503-33611522 Msa0544710:intron 40.0%
!!! GTGTCTTGCATTTTAGAGTG+AGG + chr4_1:33611574-33611593 Msa0544710:intron 40.0%
!!! GTCTTGCATTTTAGAGTGAG+GGG + chr4_1:33611576-33611595 Msa0544710:intron 40.0%
!!! TCTTGCATTTTAGAGTGAGG+GGG + chr4_1:33611577-33611596 Msa0544710:intron 40.0%
GTGCCTTCAATAAGAAGTCT+CGG + chr4_1:33611983-33612002 Msa0544710:intron 40.0%
TACATCGCTTGTGATCATGT+AGG + chr4_1:33612009-33612028 Msa0544710:intron 40.0%
GCCATAAAAATAGGCAAGGA+AGG - chr4_1:33612157-33612176 None:intergenic 40.0%
CAGAGCCATAAAAATAGGCA+AGG - chr4_1:33612161-33612180 None:intergenic 40.0%
!! TTTTATGGCTCTGTATAGGG+TGG + chr4_1:33612168-33612187 Msa0544710:intron 40.0%
AGAGTGGCTTTCATGTCAAT+GGG + chr4_1:33612205-33612224 Msa0544710:CDS 40.0%
!! CAGAGTGTCAAATCTTTTGC+AGG - chr4_1:33612430-33612449 None:intergenic 40.0%
! ATTTGACACTCTGAAAGCTG+TGG + chr4_1:33612437-33612456 Msa0544710:three_prime_UTR 40.0%
TGATCTGATTTCGGAAAGAC+CGG + chr4_1:33612599-33612618 Msa0544710:three_prime_UTR 40.0%
GGACCAGATGAACTATTGTT+TGG + chr4_1:33612730-33612749 Msa0544710:three_prime_UTR 40.0%
!! TGCGTATTTTTGTGTGTGCG+AGG + chr4_1:33610127-33610146 Msa0544710:five_prime_UTR 45.0%
!! GCGTATTTTTGTGTGTGCGA+GGG + chr4_1:33610128-33610147 Msa0544710:five_prime_UTR 45.0%
! TTTTTGTGTGTGCGAGGGAA+TGG + chr4_1:33610133-33610152 Msa0544710:exon 45.0%
GAATGGACGCGATTGGATTT+GGG + chr4_1:33610150-33610169 Msa0544710:exon 45.0%
!!! GATTTTTCGGGTTCTGGAAG+TGG + chr4_1:33610177-33610196 Msa0544710:CDS 45.0%
AAACTGATAACCACCTCCGA+CGG - chr4_1:33610264-33610283 None:intergenic 45.0%
TTATCAGTTTCCGGTGAAGC+AGG + chr4_1:33610274-33610293 Msa0544710:CDS 45.0%
TAGCCGGTGGAATAAAGCAA+AGG + chr4_1:33610349-33610368 Msa0544710:CDS 45.0%
! CCTCCTTTGCTTTATTCCAC+CGG - chr4_1:33610355-33610374 None:intergenic 45.0%
TTAGGGCTCTGTGAATCTTG+AGG + chr4_1:33610461-33610480 Msa0544710:intron 45.0%
ACATTTCAGCTGGACGTGTT+AGG - chr4_1:33610516-33610535 None:intergenic 45.0%
! GGATTTCTTTTCTATGGCCC+TGG + chr4_1:33610746-33610765 Msa0544710:CDS 45.0%
!! CATTTGGCTTTGGGAGACAA+TGG - chr4_1:33610799-33610818 None:intergenic 45.0%
!! GGTTCTGGACATTTGGCTTT+GGG - chr4_1:33610808-33610827 None:intergenic 45.0%
!! AGGTTCTGGACATTTGGCTT+TGG - chr4_1:33610809-33610828 None:intergenic 45.0%
! ACAGAAGCATGAGGCAGTTA+AGG + chr4_1:33610881-33610900 Msa0544710:intron 45.0%
CACATGGACCCAACACAATT+TGG - chr4_1:33610970-33610989 None:intergenic 45.0%
!!! CTTGCATTTTAGAGTGAGGG+GGG + chr4_1:33611578-33611597 Msa0544710:intron 45.0%
GGACGAAGTAGTAACAGCAA+AGG + chr4_1:33611814-33611833 Msa0544710:intron 45.0%
! GTAACTACGTACGCCAGTTT+TGG + chr4_1:33611946-33611965 Msa0544710:intron 45.0%
! TTCTTATTGAAGGCACGTGC+GGG - chr4_1:33611979-33611998 None:intergenic 45.0%
! CTTCTTATTGAAGGCACGTG+CGG - chr4_1:33611980-33611999 None:intergenic 45.0%
GCACCGAGACTTCTTATTGA+AGG - chr4_1:33611989-33612008 None:intergenic 45.0%
CATTGACATGAAAGCCACTC+TGG - chr4_1:33612206-33612225 None:intergenic 45.0%
CAGAGTGGCTTTCATGTCAA+TGG + chr4_1:33612204-33612223 Msa0544710:CDS 45.0%
!!! CAGTTTTTAGGTGTCACCCT+TGG + chr4_1:33612637-33612656 Msa0544710:three_prime_UTR 45.0%
GTCACCCTTGGAATGATCTT+TGG + chr4_1:33612649-33612668 Msa0544710:three_prime_UTR 45.0%
!!! TTTTTTTTTTAATTTGAAAA+AGG + chr4_1:33610038-33610057 Msa0544710:five_prime_UTR 5.0%
GGAATGGACGCGATTGGATT+TGG + chr4_1:33610149-33610168 Msa0544710:exon 50.0%
!!! GGAGTGGATTTTTCGGGTTC+TGG + chr4_1:33610171-33610190 Msa0544710:CDS 50.0%
GCGTCGGATTCGTTCGAATT+CGG + chr4_1:33610223-33610242 Msa0544710:CDS 50.0%
CGTCGGATTCGTTCGAATTC+GGG + chr4_1:33610224-33610243 Msa0544710:CDS 50.0%
CGGAGGTGGTTATCAGTTTC+CGG + chr4_1:33610265-33610284 Msa0544710:CDS 50.0%
GTCACCAGTAAGAGTAAGCG+AGG - chr4_1:33610312-33610331 None:intergenic 50.0%
CTATTGCTCAGCTCAGTAGC+CGG + chr4_1:33610333-33610352 Msa0544710:CDS 50.0%
CCGGTGGAATAAAGCAAAGG+AGG + chr4_1:33610352-33610371 Msa0544710:CDS 50.0%
GGATGGTGAAAATGCCTCTC+AGG + chr4_1:33610373-33610392 Msa0544710:CDS 50.0%
CTTGAGGTCTGTCATGACTC+TGG + chr4_1:33610477-33610496 Msa0544710:intron 50.0%
! ATGACTCTGGTGCCTTTTCC+AGG + chr4_1:33610490-33610509 Msa0544710:intron 50.0%
GCTCTGCGAATGACTTCCTA+TGG + chr4_1:33610725-33610744 Msa0544710:CDS 50.0%
GGTACCAGGCAAAAGAACCA+GGG - chr4_1:33610766-33610785 None:intergenic 50.0%
TGGTACCAGGCAAAAGAACC+AGG - chr4_1:33610767-33610786 None:intergenic 50.0%
ATGGTCAAGCAACTGGTACC+AGG - chr4_1:33610780-33610799 None:intergenic 50.0%
GGAGACAATGGTCAAGCAAC+TGG - chr4_1:33610787-33610806 None:intergenic 50.0%
! GTTGGGTCCATGTGTCATTG+CGG + chr4_1:33610976-33610995 Msa0544710:CDS 50.0%
TGCGGGTGTTCAACCAAAAC+TGG - chr4_1:33611962-33611981 None:intergenic 50.0%
GGAAAGACCGGAAACATGCT+GGG + chr4_1:33612611-33612630 Msa0544710:three_prime_UTR 50.0%
! CATGCTGGGAGGCAGTTTTT+AGG + chr4_1:33612625-33612644 Msa0544710:three_prime_UTR 50.0%
GACGCGATTGGATTTGGGAG+TGG + chr4_1:33610155-33610174 Msa0544710:CDS 55.0%
ACCCGAAACCGGATTCTCGA+CGG + chr4_1:33610201-33610220 Msa0544710:CDS 55.0%
! CGTTCGAATTCGGGTTCACC+TGG + chr4_1:33610233-33610252 Msa0544710:CDS 55.0%
GCTGCCTCGCTTACTCTTAC+TGG + chr4_1:33610305-33610324 Msa0544710:CDS 55.0%
GGACGTGTTAGGCCTGGAAA+AGG - chr4_1:33610505-33610524 None:intergenic 55.0%
!! ATGGCCCTGGTTCTTTTGCC+TGG + chr4_1:33610759-33610778 Msa0544710:CDS 55.0%
AAAGCCACTCTGGCTGGAAG+AGG - chr4_1:33612196-33612215 None:intergenic 55.0%
GACATGAAAGCCACTCTGGC+TGG - chr4_1:33612202-33612221 None:intergenic 55.0%
CGGAAAGACCGGAAACATGC+TGG + chr4_1:33612610-33612629 Msa0544710:three_prime_UTR 55.0%
AAGACCGGAAACATGCTGGG+AGG + chr4_1:33612614-33612633 Msa0544710:three_prime_UTR 55.0%
ACTGCCTCCCAGCATGTTTC+CGG - chr4_1:33612621-33612640 None:intergenic 55.0%
TGCGAGGGAATGGACGCGAT+TGG + chr4_1:33610143-33610162 Msa0544710:exon 60.0%
CTGGAAGTGGGACCCGAAAC+CGG + chr4_1:33610190-33610209 Msa0544710:CDS 60.0%
GCCGTCGAGAATCCGGTTTC+GGG - chr4_1:33610205-33610224 None:intergenic 60.0%
CGCCGTCGAGAATCCGGTTT+CGG - chr4_1:33610206-33610225 None:intergenic 60.0%
AACCGGATTCTCGACGGCGT+CGG + chr4_1:33610207-33610226 Msa0544710:CDS 60.0%
ATCCGACGCCGTCGAGAATC+CGG - chr4_1:33610212-33610231 None:intergenic 60.0%
CTGATAACCACCTCCGACGG+CGG - chr4_1:33610261-33610280 None:intergenic 60.0%
GCAGTTAGCGCCTGCTTCAC+CGG - chr4_1:33610287-33610306 None:intergenic 60.0%
TTGCTCAGCTCAGTAGCCGG+TGG + chr4_1:33610336-33610355 Msa0544710:CDS 60.0%
TCAGCTGGACGTGTTAGGCC+TGG - chr4_1:33610511-33610530 None:intergenic 60.0%
GGTTCACCTGGTTCCGCCGT+CGG + chr4_1:33610245-33610264 Msa0544710:CDS 65.0%
GGTGCCTCTTCCAGCCAGAG+TGG + chr4_1:33612189-33612208 Msa0544710:CDS 65.0%
TCACCTGGTTCCGCCGTCGG+AGG + chr4_1:33610248-33610267 Msa0544710:CDS 70.0%
CCACCTCCGACGGCGGAACC+AGG - chr4_1:33610254-33610273 None:intergenic 75.0%
CCTGGTTCCGCCGTCGGAGG+TGG + chr4_1:33610251-33610270 Msa0544710:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33609898 33612881 33609898 ID=Msa0544710;Name=Msa0544710
chr4_1 mRNA 33609898 33612881 33609898 ID=Msa0544710-mRNA-1;Parent=Msa0544710;Name=Msa0544710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=254|1|1|1|0.6|0.5|6|528|219
chr4_1 exon 33609898 33610394 33609898 ID=Msa0544710-mRNA-1:exon:8585;Parent=Msa0544710-mRNA-1
chr4_1 exon 33610683 33610838 33610683 ID=Msa0544710-mRNA-1:exon:8586;Parent=Msa0544710-mRNA-1
chr4_1 exon 33610956 33611088 33610956 ID=Msa0544710-mRNA-1:exon:8587;Parent=Msa0544710-mRNA-1
chr4_1 exon 33611175 33611214 33611175 ID=Msa0544710-mRNA-1:exon:8588;Parent=Msa0544710-mRNA-1
chr4_1 exon 33612186 33612326 33612186 ID=Msa0544710-mRNA-1:exon:8589;Parent=Msa0544710-mRNA-1
chr4_1 exon 33612407 33612881 33612407 ID=Msa0544710-mRNA-1:exon:8590;Parent=Msa0544710-mRNA-1
chr4_1 five_prime_UTR 33609898 33610151 33609898 ID=Msa0544710-mRNA-1:five_prime_utr;Parent=Msa0544710-mRNA-1
chr4_1 CDS 33610152 33610394 33610152 ID=Msa0544710-mRNA-1:cds;Parent=Msa0544710-mRNA-1
chr4_1 CDS 33610683 33610838 33610683 ID=Msa0544710-mRNA-1:cds;Parent=Msa0544710-mRNA-1
chr4_1 CDS 33610956 33611088 33610956 ID=Msa0544710-mRNA-1:cds;Parent=Msa0544710-mRNA-1
chr4_1 CDS 33611175 33611214 33611175 ID=Msa0544710-mRNA-1:cds;Parent=Msa0544710-mRNA-1
chr4_1 CDS 33612186 33612273 33612186 ID=Msa0544710-mRNA-1:cds;Parent=Msa0544710-mRNA-1
chr4_1 three_prime_UTR 33612274 33612326 33612274 ID=Msa0544710-mRNA-1:three_prime_utr;Parent=Msa0544710-mRNA-1
chr4_1 three_prime_UTR 33612407 33612881 33612407 ID=Msa0544710-mRNA-1:three_prime_utr;Parent=Msa0544710-mRNA-1
Gene Sequence

>Msa0544710

ATGGACGCGATTGGATTTGGGAGTGGATTTTTCGGGTTCTGGAAGTGGGACCCGAAACCGGATTCTCGACGGCGTCGGATTCGTTCGAATTCGGGTTCACCTGGTTCCGCCGTCGGAGGTGGTTATCAGTTTCCGGTGAAGCAGGCGCTAACTGCTGCCTCGCTTACTCTTACTGGTGACACTATTGCTCAGCTCAGTAGCCGGTGGAATAAAGCAAAGGAGGATGGTGAAAATGCCTCTCAGGATGTATTGTCGAAGCTTCTTTCAGAACACGATTTGCTACGTGCTCTGCGAATGACTTCCTATGGATTTCTTTTCTATGGCCCTGGTTCTTTTGCCTGGTACCAGTTGCTTGACCATTGTCTCCCAAAGCCAAATGTCCAGAACCTAATGTTAAAGGTTTTACTAAACCAAATTGTGTTGGGTCCATGTGTCATTGCGGTTATCTTTGCATGGAACAATTTATGGCAACAAAAGCTTTCAGAGCTTCCGGAAAAATACAAAAGAGATGCTCTTCCCACTTTACTTTATGGTTTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTGGGTGGTGCCTCTTCCAGCCAGAGTGGCTTTCATGTCAATGGGCTCAATATTTTGGAATTTTTACCTATCATCAACTATGAACAAGTAA

Protein sequence

>Msa0544710

MDAIGFGSGFFGFWKWDPKPDSRRRRIRSNSGSPGSAVGGGYQFPVKQALTAASLTLTGDTIAQLSSRWNKAKEDGENASQDVLSKLLSEHDLLRALRMTSYGFLFYGPGSFAWYQLLDHCLPKPNVQNLMLKVLLNQIVLGPCVIAVIFAWNNLWQQKLSELPEKYKRDALPTLLYGFRFWIPVSVLNFWVVPLPARVAFMSMGSIFWNFYLSSTMNK*