Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343890 | XP_013445312.1 | 92.994 | 314 | 22 | 0 | 1 | 314 | 198 | 511 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343890 | sp|Q9SAL0|RGLG4_ARATH | 63.830 | 47 | 17 | 0 | 266 | 312 | 354 | 400 | 6.10e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343890 | A0A072TR76 | 92.994 | 314 | 22 | 0 | 1 | 314 | 198 | 511 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0648950 | Msa1343890 | 0.805891 | 1.072329e-49 | -8.615850e-47 |
| Msa1343890 | Msa1447870 | 0.809313 | 2.012589e-50 | -8.615850e-47 |
| Msa0296900 | Msa1343890 | 0.802293 | 6.009149e-49 | -8.615850e-47 |
| Msa0335080 | Msa1343890 | 0.822213 | 2.671885e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343890 | MtrunA17_Chr8g0356421 | 92.994 | 314 | 22 | 0 | 1 | 314 | 198 | 511 | 0.0 | 605 |
| Msa1343890 | MtrunA17_Chr8g0356391 | 35.072 | 345 | 183 | 8 | 1 | 314 | 222 | 556 | 3.64e-52 | 180 |
| Msa1343890 | MtrunA17_Chr8g0356381 | 55.556 | 63 | 22 | 1 | 258 | 314 | 345 | 407 | 3.64e-18 | 84.3 |
| Msa1343890 | MtrunA17_Chr6g0488251 | 61.224 | 49 | 19 | 0 | 266 | 314 | 259 | 307 | 1.39e-17 | 81.6 |
| Msa1343890 | MtrunA17_Chr2g0309781 | 61.224 | 49 | 19 | 0 | 266 | 314 | 355 | 403 | 2.43e-17 | 82.0 |
| Msa1343890 | MtrunA17_Chr2g0309791 | 61.224 | 49 | 19 | 0 | 266 | 314 | 369 | 417 | 3.66e-17 | 81.6 |
| Msa1343890 | MtrunA17_Chr6g0458051 | 62.000 | 50 | 19 | 0 | 263 | 312 | 437 | 486 | 2.84e-15 | 76.3 |
| Msa1343890 | MtrunA17_Chr3g0130411 | 54.902 | 51 | 23 | 0 | 262 | 312 | 387 | 437 | 4.28e-15 | 75.5 |
| Msa1343890 | MtrunA17_Chr3g0116661 | 51.667 | 60 | 25 | 1 | 257 | 312 | 376 | 435 | 8.53e-14 | 71.6 |
| Msa1343890 | MtrunA17_Chr7g0226791 | 58.000 | 50 | 21 | 0 | 263 | 312 | 396 | 445 | 1.20e-13 | 71.2 |
| Msa1343890 | MtrunA17_Chr2g0309671 | 29.752 | 242 | 111 | 4 | 68 | 252 | 673 | 912 | 1.29e-12 | 68.6 |
| Msa1343890 | MtrunA17_Chr8g0381321 | 61.364 | 44 | 17 | 0 | 269 | 312 | 432 | 475 | 1.40e-12 | 68.2 |
| Msa1343890 | MtrunA17_Chr3g0123481 | 56.818 | 44 | 19 | 0 | 269 | 312 | 427 | 470 | 8.57e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343890 | AT1G79380.1 | 63.830 | 47 | 17 | 0 | 266 | 312 | 354 | 400 | 6.20e-16 | 78.2 |
| Msa1343890 | AT5G63970.2 | 60.417 | 48 | 19 | 0 | 265 | 312 | 319 | 366 | 2.54e-14 | 73.2 |
| Msa1343890 | AT5G63970.1 | 60.417 | 48 | 19 | 0 | 265 | 312 | 319 | 366 | 2.54e-14 | 73.2 |
| Msa1343890 | AT5G14420.3 | 63.043 | 46 | 17 | 0 | 267 | 312 | 423 | 468 | 5.42e-14 | 72.8 |
| Msa1343890 | AT5G14420.2 | 63.043 | 46 | 17 | 0 | 267 | 312 | 423 | 468 | 5.42e-14 | 72.8 |
| Msa1343890 | AT5G14420.4 | 63.043 | 46 | 17 | 0 | 267 | 312 | 423 | 468 | 5.42e-14 | 72.8 |
| Msa1343890 | AT5G14420.1 | 63.043 | 46 | 17 | 0 | 267 | 312 | 423 | 468 | 5.42e-14 | 72.8 |
| Msa1343890 | AT3G01650.2 | 60.870 | 46 | 18 | 0 | 267 | 312 | 444 | 489 | 1.96e-13 | 70.9 |
| Msa1343890 | AT3G01650.1 | 60.870 | 46 | 18 | 0 | 267 | 312 | 444 | 489 | 1.96e-13 | 70.9 |
| Msa1343890 | AT1G79280.1 | 27.018 | 285 | 144 | 6 | 74 | 296 | 676 | 958 | 2.30e-11 | 65.5 |
| Msa1343890 | AT1G79280.2 | 27.037 | 270 | 135 | 5 | 74 | 281 | 676 | 945 | 5.74e-11 | 63.9 |
Find 46 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTCCTTCCAAAGCAATTT+TGG | 0.147630 | tig0006730:+2309 | Msa1343890:CDS |
| GTCACTTCAGCCATTCTTAT+AGG | 0.243623 | tig0006730:-2271 | None:intergenic |
| TGCAATCAAAGCTTAACTAT+TGG | 0.303071 | tig0006730:+1489 | Msa1343890:CDS |
| AGAAGATCACTGATCGTATT+AGG | 0.324076 | tig0006730:+3174 | Msa1343890:CDS |
| GAGAGACCTAAAAGAAGAAT+TGG | 0.327728 | tig0006730:+1335 | Msa1343890:CDS |
| TCAAAGGCTTCACTGTTTGC+AGG | 0.355774 | tig0006730:+1732 | Msa1343890:CDS |
| ATGCAGATTGCAATGGAAAC+TGG | 0.376164 | tig0006730:+1822 | Msa1343890:intron |
| GAAACTGTAAAGTCTATTAG+AGG | 0.377927 | tig0006730:-1531 | None:intergenic |
| TTCTTCAGCCAAAATTGCTT+TGG | 0.380072 | tig0006730:-2317 | None:intergenic |
| GCAATCAAAGCTTAACTATT+GGG | 0.384195 | tig0006730:+1490 | Msa1343890:CDS |
| AATGAGAAGGACATGGCCTT+TGG | 0.423926 | tig0006730:+3011 | Msa1343890:CDS |
| ATGAAATTCTCTCTTAGTCT+TGG | 0.429482 | tig0006730:-2191 | None:intergenic |
| GGCCTTTGGTTGTGGACATA+TGG | 0.433784 | tig0006730:+3025 | Msa1343890:CDS |
| TACCTCAACAACAGCAGCCT+TGG | 0.448360 | tig0006730:-2341 | None:intergenic |
| TCATTATCTACCACCTCATC+TGG | 0.453778 | tig0006730:-938 | None:intergenic |
| AAGAAGAATTGGAAATGATC+AGG | 0.459481 | tig0006730:+1346 | Msa1343890:CDS |
| TTCATATGACCCTCTATGCT+TGG | 0.463793 | tig0006730:+964 | Msa1343890:CDS |
| AAGGACATGGCCTTTGGTTG+TGG | 0.470987 | tig0006730:+3017 | Msa1343890:CDS |
| CAACAAAGTCCAAGAGGTTG+AGG | 0.495272 | tig0006730:+1305 | Msa1343890:CDS |
| TCAGCCAAAATTGCTTTGGA+AGG | 0.506663 | tig0006730:-2313 | None:intergenic |
| ATCTCAATTTCCTATAAGAA+TGG | 0.507525 | tig0006730:+2261 | Msa1343890:CDS |
| GATCGTATTAGGTTATTCCC+TGG | 0.512389 | tig0006730:+3185 | Msa1343890:CDS |
| CTAGTTTCCAATCAAAATGT+TGG | 0.519148 | tig0006730:-489 | None:intergenic |
| TGGTTACGAATTTATCTCAA+AGG | 0.520265 | tig0006730:+1716 | Msa1343890:CDS |
| GAATAAAATTCCAAGCATAG+AGG | 0.529037 | tig0006730:-974 | None:intergenic |
| AACAAAACAAGTACGTTGAA+AGG | 0.533145 | tig0006730:+2215 | Msa1343890:CDS |
| GTTACCTGGCTAGTCAAGGT+TGG | 0.542198 | tig0006730:-2778 | None:intergenic |
| AAATCCAACCTTGACTAGCC+AGG | 0.544678 | tig0006730:+2774 | Msa1343890:CDS |
| TCGTCTTCTTAACACAGCAT+TGG | 0.544687 | tig0006730:-522 | None:intergenic |
| ATCCAAGGCTGCTGTTGTTG+AGG | 0.547362 | tig0006730:+2339 | Msa1343890:CDS |
| ATGCAGACTTGCAGAGAGTG+TGG | 0.548113 | tig0006730:+3119 | Msa1343890:intron |
| AGAGTTTGTACATATGCTGC+AGG | 0.555116 | tig0006730:+1869 | Msa1343890:CDS |
| AAACAACGAGCAATCAAGAA+TGG | 0.556469 | tig0006730:+557 | Msa1343890:CDS |
| TGAAGTTACCTGGCTAGTCA+AGG | 0.561830 | tig0006730:-2782 | None:intergenic |
| TGAGAAACAAGCTCGTCAAA+TGG | 0.563718 | tig0006730:+1696 | Msa1343890:CDS |
| TACCATATGTCCACAACCAA+AGG | 0.570532 | tig0006730:-3027 | None:intergenic |
| AATAAAATTCCAAGCATAGA+GGG | 0.576742 | tig0006730:-973 | None:intergenic |
| GCCTCAAAATCCAGATGAGG+TGG | 0.580299 | tig0006730:+928 | Msa1343890:CDS |
| CAAGAAAGAAAATGAACACC+AGG | 0.580380 | tig0006730:+1553 | Msa1343890:CDS |
| CTTAAGCAATGAGAAGGACA+TGG | 0.593681 | tig0006730:+3004 | Msa1343890:CDS |
| TGCAGACTTGCAGAGAGTGT+GGG | 0.612908 | tig0006730:+3120 | Msa1343890:intron |
| AATTTGCTTAAGCAATGAGA+AGG | 0.614017 | tig0006730:+2998 | Msa1343890:CDS |
| AATGCCTCAAAATCCAGATG+AGG | 0.659583 | tig0006730:+925 | Msa1343890:CDS |
| AGCTAACAACAAAGTCCAAG+AGG | 0.661035 | tig0006730:+1299 | Msa1343890:CDS |
| AGAAGAAAATATCAACAACA+AGG | 0.698009 | tig0006730:+1177 | Msa1343890:intron |
| TGGAAACTGGAGTAGCAGAG+AGG | 0.732918 | tig0006730:+1835 | Msa1343890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTTTTTTTTTTTTAAC+AGG | + | tig0006730:898-917 | Msa1343890:intron | 10.0% |
| !! | TATTTGAAAAAATAAATGAA+TGG | - | tig0006730:1067-1086 | None:intergenic | 10.0% |
| !!! | GATTTATAATTTACTTTTAT+AGG | + | tig0006730:2453-2472 | Msa1343890:intron | 10.0% |
| !!! | AATATTATTTCTGTTATAAT+TGG | + | tig0006730:2930-2949 | Msa1343890:intron | 10.0% |
| !! | TAAATGTAAATTCATTATTG+AGG | + | tig0006730:794-813 | Msa1343890:intron | 15.0% |
| !! | CATGTTATAAAGTAAAAATT+GGG | + | tig0006730:844-863 | Msa1343890:intron | 15.0% |
| !! | ATGAAATCAAAATATACAAA+AGG | - | tig0006730:1128-1147 | None:intergenic | 15.0% |
| !! | AAAAGTAAATTATAAATCCT+CGG | - | tig0006730:2451-2470 | None:intergenic | 15.0% |
| !! | CTTATGTTTAAATTATATTC+AGG | + | tig0006730:2726-2745 | Msa1343890:intron | 15.0% |
| !!! | AAATGTTTTTGAGTAAATAT+TGG | - | tig0006730:2898-2917 | None:intergenic | 15.0% |
| !!! | AAAAATATAATCCAGTTTTT+TGG | - | tig0006730:3057-3076 | None:intergenic | 15.0% |
| !!! | CCAATTTTTACTTTATAACA+TGG | - | tig0006730:846-865 | None:intergenic | 20.0% |
| !! | CCATGTTATAAAGTAAAAAT+TGG | + | tig0006730:843-862 | Msa1343890:intron | 20.0% |
| !!! | AACAAGTACATTTTTCTTTT+AGG | - | tig0006730:1254-1273 | None:intergenic | 20.0% |
| !! | TATATAAGAAATATGAGTGT+TGG | + | tig0006730:1369-1388 | Msa1343890:intron | 20.0% |
| !!! | TCACAATCTAACTTTAATTT+TGG | - | tig0006730:1601-1620 | None:intergenic | 20.0% |
| !!! | AACATTTTGATTGGAAACTA+GGG | + | tig0006730:491-510 | Msa1343890:CDS | 25.0% |
| !! | ATAATTACATTTTCATCTGC+AGG | - | tig0006730:583-602 | None:intergenic | 25.0% |
| ! | AATAAAATTCCAAGCATAGA+GGG | - | tig0006730:976-995 | None:intergenic | 25.0% |
| ! | TTCACTTATTCATCTTTGTT+TGG | + | tig0006730:1147-1166 | Msa1343890:intron | 25.0% |
| ! | AGAAGAAAATATCAACAACA+AGG | + | tig0006730:1177-1196 | Msa1343890:intron | 25.0% |
| !! | TATGATTGACTTTGGAAATT+TGG | + | tig0006730:1221-1240 | Msa1343890:intron | 25.0% |
| !! | TCATTTCCAATTCTTCTTTT+AGG | - | tig0006730:1344-1363 | None:intergenic | 25.0% |
| ! | TCTTGAAATGAATTATTACC+TGG | - | tig0006730:1574-1593 | None:intergenic | 25.0% |
| ! | AGGTAATAATTCATTTCAAG+AGG | + | tig0006730:1573-1592 | Msa1343890:intron | 25.0% |
| ! | AATGTAAGTTGCATAAACTA+TGG | - | tig0006730:1761-1780 | None:intergenic | 25.0% |
| ! | ATCTCAATTTCCTATAAGAA+TGG | + | tig0006730:2261-2280 | Msa1343890:CDS | 25.0% |
| ! | AAATAATGAGAATTGAGATC+AGG | + | tig0006730:2579-2598 | Msa1343890:intron | 25.0% |
| ! | AAAAGACAGAGAAAAATGAT+AGG | + | tig0006730:2804-2823 | Msa1343890:intron | 25.0% |
| !!! | TCAAAGTAACTTTAGTTCTT+TGG | - | tig0006730:2960-2979 | None:intergenic | 25.0% |
| !! | AAACATGCCAACATTTTGAT+TGG | + | tig0006730:482-501 | Msa1343890:CDS | 30.0% |
| CTAGTTTCCAATCAAAATGT+TGG | - | tig0006730:492-511 | None:intergenic | 30.0% | |
| !!! | CAACATTTTGATTGGAAACT+AGG | + | tig0006730:490-509 | Msa1343890:CDS | 30.0% |
| CAAATCCATCCTTAGAAAAA+TGG | + | tig0006730:638-657 | Msa1343890:intron | 30.0% | |
| TTGGGACATTTAAATGATTG+TGG | + | tig0006730:862-881 | Msa1343890:intron | 30.0% | |
| GAATAAAATTCCAAGCATAG+AGG | - | tig0006730:977-996 | None:intergenic | 30.0% | |
| ! | CTATGCTTGGAATTTTATTC+AGG | + | tig0006730:977-996 | Msa1343890:CDS | 30.0% |
| ! | CTTATTCATCTTTGTTTGGT+TGG | + | tig0006730:1151-1170 | Msa1343890:intron | 30.0% |
| ! | TTTAACTTAAGCTACAATGC+AGG | + | tig0006730:1275-1294 | Msa1343890:intron | 30.0% |
| AAGAAGAATTGGAAATGATC+AGG | + | tig0006730:1346-1365 | Msa1343890:CDS | 30.0% | |
| TGCAATCAAAGCTTAACTAT+TGG | + | tig0006730:1489-1508 | Msa1343890:CDS | 30.0% | |
| GCAATCAAAGCTTAACTATT+GGG | + | tig0006730:1490-1509 | Msa1343890:CDS | 30.0% | |
| GAAACTGTAAAGTCTATTAG+AGG | - | tig0006730:1534-1553 | None:intergenic | 30.0% | |
| TGGTTACGAATTTATCTCAA+AGG | + | tig0006730:1716-1735 | Msa1343890:CDS | 30.0% | |
| ! | AATCTGCATGGTTTTTGTTA+GGG | - | tig0006730:1811-1830 | None:intergenic | 30.0% |
| CTGTAAATTAACAAATGCCA+AGG | - | tig0006730:2161-2180 | None:intergenic | 30.0% | |
| ATGAAATTCTCTCTTAGTCT+TGG | - | tig0006730:2194-2213 | None:intergenic | 30.0% | |
| AACAAAACAAGTACGTTGAA+AGG | + | tig0006730:2215-2234 | Msa1343890:CDS | 30.0% | |
| TCGTAACATAATCTAACGAA+GGG | - | tig0006730:2388-2407 | None:intergenic | 30.0% | |
| TTCGTAACATAATCTAACGA+AGG | - | tig0006730:2389-2408 | None:intergenic | 30.0% | |
| ! | CTTTTATAGGCAAATGTTAG+TGG | + | tig0006730:2466-2485 | Msa1343890:intron | 30.0% |
| !! | TTAGTGGTTAATTTGTTGAG+AGG | + | tig0006730:2482-2501 | Msa1343890:intron | 30.0% |
| !! | TAGTGGTTAATTTGTTGAGA+GGG | + | tig0006730:2483-2502 | Msa1343890:intron | 30.0% |
| GCTTAAGTTCATATATTTGC+AGG | + | tig0006730:2686-2705 | Msa1343890:intron | 30.0% | |
| ! | AATTTGCTTAAGCAATGAGA+AGG | + | tig0006730:2998-3017 | Msa1343890:CDS | 30.0% |
| AAACAACGAGCAATCAAGAA+TGG | + | tig0006730:557-576 | Msa1343890:CDS | 35.0% | |
| !! | ACAGTCCATTTTTCTAAGGA+TGG | - | tig0006730:646-665 | None:intergenic | 35.0% |
| !! | TAGCACAGTCCATTTTTCTA+AGG | - | tig0006730:650-669 | None:intergenic | 35.0% |
| !!! | GGCTCTGATTTTAATTTCTC+AGG | + | tig0006730:1198-1217 | Msa1343890:CDS | 35.0% |
| ! | TTCTCAGGTATGATTGACTT+TGG | + | tig0006730:1213-1232 | Msa1343890:intron | 35.0% |
| !!! | TCATTTTTTCCTCAACCTCT+TGG | - | tig0006730:1317-1336 | None:intergenic | 35.0% |
| GAGAGACCTAAAAGAAGAAT+TGG | + | tig0006730:1335-1354 | Msa1343890:CDS | 35.0% | |
| CAAGAAAGAAAATGAACACC+AGG | + | tig0006730:1553-1572 | Msa1343890:CDS | 35.0% | |
| ! | CAATCTGCATGGTTTTTGTT+AGG | - | tig0006730:1812-1831 | None:intergenic | 35.0% |
| AAAAACCATGCAGATTGCAA+TGG | + | tig0006730:1815-1834 | Msa1343890:intron | 35.0% | |
| TCAGTGTGTCATATGTTTGA+AGG | + | tig0006730:2088-2107 | Msa1343890:intron | 35.0% | |
| ATGTTTGAAGGCAAATAGAG+AGG | + | tig0006730:2100-2119 | Msa1343890:intron | 35.0% | |
| AAGGAGTAGTAAGTAACTTG+AGG | - | tig0006730:2142-2161 | None:intergenic | 35.0% | |
| TCAAGTTACTTACTACTCCT+TGG | + | tig0006730:2141-2160 | Msa1343890:intron | 35.0% | |
| TTCTTCAGCCAAAATTGCTT+TGG | - | tig0006730:2320-2339 | None:intergenic | 35.0% | |
| !!! | AATTTTGGCTGAAGAATCCA+AGG | + | tig0006730:2324-2343 | Msa1343890:CDS | 35.0% |
| CGTAACATAATCTAACGAAG+GGG | - | tig0006730:2387-2406 | None:intergenic | 35.0% | |
| TACTACGCTAAGTGTACATT+AGG | + | tig0006730:2418-2437 | Msa1343890:intron | 35.0% | |
| !! | AGTGGTTAATTTGTTGAGAG+GGG | + | tig0006730:2484-2503 | Msa1343890:intron | 35.0% |
| TATGGTAAGGTCCAAAAAAC+TGG | + | tig0006730:3043-3062 | Msa1343890:intron | 35.0% | |
| AGAAGATCACTGATCGTATT+AGG | + | tig0006730:3174-3193 | Msa1343890:CDS | 35.0% | |
| TCGTCTTCTTAACACAGCAT+TGG | - | tig0006730:525-544 | None:intergenic | 40.0% | |
| AATGCCTCAAAATCCAGATG+AGG | + | tig0006730:925-944 | Msa1343890:CDS | 40.0% | |
| TCATTATCTACCACCTCATC+TGG | - | tig0006730:941-960 | None:intergenic | 40.0% | |
| TTCATATGACCCTCTATGCT+TGG | + | tig0006730:964-983 | Msa1343890:CDS | 40.0% | |
| AGCTAACAACAAAGTCCAAG+AGG | + | tig0006730:1299-1318 | Msa1343890:CDS | 40.0% | |
| TTACATAAGTCGATGACACG+TGG | - | tig0006730:1399-1418 | None:intergenic | 40.0% | |
| TGAGAAACAAGCTCGTCAAA+TGG | + | tig0006730:1696-1715 | Msa1343890:CDS | 40.0% | |
| AGTTTCCATTGCAATCTGCA+TGG | - | tig0006730:1823-1842 | None:intergenic | 40.0% | |
| ATGCAGATTGCAATGGAAAC+TGG | + | tig0006730:1822-1841 | Msa1343890:intron | 40.0% | |
| AGAGTTTGTACATATGCTGC+AGG | + | tig0006730:1869-1888 | Msa1343890:CDS | 40.0% | |
| ATGGCTTCAATCATTGGTGT+CGG | - | tig0006730:1952-1971 | None:intergenic | 40.0% | |
| CTGAACATGGCTTCAATCAT+TGG | - | tig0006730:1958-1977 | None:intergenic | 40.0% | |
| CACGTTTCAAACACTGAACA+TGG | - | tig0006730:1971-1990 | None:intergenic | 40.0% | |
| ATGACACACTGACATAGACA+AGG | - | tig0006730:2080-2099 | None:intergenic | 40.0% | |
| GTCACTTCAGCCATTCTTAT+AGG | - | tig0006730:2274-2293 | None:intergenic | 40.0% | |
| ! | CAGTCCTTCCAAAGCAATTT+TGG | + | tig0006730:2309-2328 | Msa1343890:CDS | 40.0% |
| ! | TCAGCCAAAATTGCTTTGGA+AGG | - | tig0006730:2316-2335 | None:intergenic | 40.0% |
| ATGTACACTTAGCGTAGTAG+TGG | - | tig0006730:2417-2436 | None:intergenic | 40.0% | |
| CGCTAAGTGTACATTAGGAA+AGG | + | tig0006730:2423-2442 | Msa1343890:intron | 40.0% | |
| !! | GTGGTTAATTTGTTGAGAGG+GGG | + | tig0006730:2485-2504 | Msa1343890:intron | 40.0% |
| !! | TAATTTGTTGAGAGGGGGAT+TGG | + | tig0006730:2490-2509 | Msa1343890:intron | 40.0% |
| TGAGATCAGGTGTCTTTGTA+AGG | + | tig0006730:2592-2611 | Msa1343890:intron | 40.0% | |
| !!! | CTCTGTCTTTTGAAGTTACC+TGG | - | tig0006730:2795-2814 | None:intergenic | 40.0% |
| CTTAAGCAATGAGAAGGACA+TGG | + | tig0006730:3004-3023 | Msa1343890:CDS | 40.0% | |
| TACCATATGTCCACAACCAA+AGG | - | tig0006730:3030-3049 | None:intergenic | 40.0% | |
| TTGGTTGTGGACATATGGTA+AGG | + | tig0006730:3030-3049 | Msa1343890:intron | 40.0% | |
| GATCGTATTAGGTTATTCCC+TGG | + | tig0006730:3185-3204 | Msa1343890:CDS | 40.0% | |
| ! | ACCACCTCATCTGGATTTTG+AGG | - | tig0006730:932-951 | None:intergenic | 45.0% |
| CAACAAAGTCCAAGAGGTTG+AGG | + | tig0006730:1305-1324 | Msa1343890:CDS | 45.0% | |
| TCAAAGGCTTCACTGTTTGC+AGG | + | tig0006730:1732-1751 | Msa1343890:CDS | 45.0% | |
| ATGACACTGACACAAACACG+TGG | - | tig0006730:2048-2067 | None:intergenic | 45.0% | |
| GTTTGTGTCAGTGTCATGTC+TGG | + | tig0006730:2051-2070 | Msa1343890:intron | 45.0% | |
| GTACATTAGGAAAGGAACCG+AGG | + | tig0006730:2431-2450 | Msa1343890:intron | 45.0% | |
| !! | GGAGAATTTGTTAGCAGCAC+CGG | + | tig0006730:2511-2530 | Msa1343890:intron | 45.0% |
| ! | AAATCCAACCTTGACTAGCC+AGG | + | tig0006730:2774-2793 | Msa1343890:CDS | 45.0% |
| ! | TGAAGTTACCTGGCTAGTCA+AGG | - | tig0006730:2785-2804 | None:intergenic | 45.0% |
| AATGAGAAGGACATGGCCTT+TGG | + | tig0006730:3011-3030 | Msa1343890:CDS | 45.0% | |
| GCCTCAAAATCCAGATGAGG+TGG | + | tig0006730:928-947 | Msa1343890:CDS | 50.0% | |
| CATAAGTCGATGACACGTGG+CGG | - | tig0006730:1396-1415 | None:intergenic | 50.0% | |
| TGGAAACTGGAGTAGCAGAG+AGG | + | tig0006730:1835-1854 | Msa1343890:CDS | 50.0% | |
| CAGTGTCATGTCAGGGATGT+CGG | - | tig0006730:2001-2020 | None:intergenic | 50.0% | |
| CACGTGTCAGTGTCATGTCA+GGG | - | tig0006730:2008-2027 | None:intergenic | 50.0% | |
| ATCCAAGGCTGCTGTTGTTG+AGG | + | tig0006730:2339-2358 | Msa1343890:CDS | 50.0% | |
| TACCTCAACAACAGCAGCCT+TGG | - | tig0006730:2344-2363 | None:intergenic | 50.0% | |
| AAGGAGGTTCAAGGTTCGAC+CGG | - | tig0006730:2533-2552 | None:intergenic | 50.0% | |
| CGAACCTTGAACCTCCTTCT+AGG | + | tig0006730:2535-2554 | Msa1343890:intron | 50.0% | |
| GAGACCTAGAAGGAGGTTCA+AGG | - | tig0006730:2542-2561 | None:intergenic | 50.0% | |
| TGAACCTCCTTCTAGGTCTC+AGG | + | tig0006730:2542-2561 | Msa1343890:intron | 50.0% | |
| GAACCTCCTTCTAGGTCTCA+GGG | + | tig0006730:2543-2562 | Msa1343890:intron | 50.0% | |
| TTACCACCCTGAGACCTAGA+AGG | - | tig0006730:2552-2571 | None:intergenic | 50.0% | |
| ! | GTTACCTGGCTAGTCAAGGT+TGG | - | tig0006730:2781-2800 | None:intergenic | 50.0% |
| AAGGACATGGCCTTTGGTTG+TGG | + | tig0006730:3017-3036 | Msa1343890:CDS | 50.0% | |
| GGCCTTTGGTTGTGGACATA+TGG | + | tig0006730:3025-3044 | Msa1343890:CDS | 50.0% | |
| ATGCAGACTTGCAGAGAGTG+TGG | + | tig0006730:3119-3138 | Msa1343890:intron | 50.0% | |
| ! | TGCAGACTTGCAGAGAGTGT+GGG | + | tig0006730:3120-3139 | Msa1343890:intron | 50.0% |
| CCACGTGTCAGTGTCATGTC+AGG | - | tig0006730:2009-2028 | None:intergenic | 55.0% | |
| CCTGACATGACACTGACACG+TGG | + | tig0006730:2006-2025 | Msa1343890:intron | 55.0% | |
| GGTCTCAGGGTGGTAAAGAG+AGG | + | tig0006730:2556-2575 | Msa1343890:intron | 55.0% | |
| CCACCCTGAGACCTAGAAGG+AGG | - | tig0006730:2549-2568 | None:intergenic | 60.0% | |
| CCTCCTTCTAGGTCTCAGGG+TGG | + | tig0006730:2546-2565 | Msa1343890:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006730 | gene | 478 | 3208 | 478 | ID=Msa1343890;Name=Msa1343890 |
| tig0006730 | mRNA | 478 | 3208 | 478 | ID=Msa1343890-mRNA-1;Parent=Msa1343890;Name=Msa1343890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|0.90|11|0|314 |
| tig0006730 | exon | 478 | 594 | 478 | ID=Msa1343890-mRNA-1:exon:4310;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 920 | 998 | 920 | ID=Msa1343890-mRNA-1:exon:4311;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 1179 | 1219 | 1179 | ID=Msa1343890-mRNA-1:exon:4312;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 1297 | 1367 | 1297 | ID=Msa1343890-mRNA-1:exon:4313;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 1472 | 1574 | 1472 | ID=Msa1343890-mRNA-1:exon:4314;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 1655 | 1753 | 1655 | ID=Msa1343890-mRNA-1:exon:4315;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 1828 | 1890 | 1828 | ID=Msa1343890-mRNA-1:exon:4316;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 2181 | 2360 | 2181 | ID=Msa1343890-mRNA-1:exon:4317;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 2748 | 2795 | 2748 | ID=Msa1343890-mRNA-1:exon:4318;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 2990 | 3046 | 2990 | ID=Msa1343890-mRNA-1:exon:4319;Parent=Msa1343890-mRNA-1 |
| tig0006730 | exon | 3125 | 3208 | 3125 | ID=Msa1343890-mRNA-1:exon:4320;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 478 | 594 | 478 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 920 | 998 | 920 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 1179 | 1219 | 1179 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 1297 | 1367 | 1297 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 1472 | 1574 | 1472 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 1655 | 1753 | 1655 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 1828 | 1890 | 1828 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 2181 | 2360 | 2181 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 2748 | 2795 | 2748 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 2990 | 3046 | 2990 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| tig0006730 | CDS | 3125 | 3208 | 3125 | ID=Msa1343890-mRNA-1:cds;Parent=Msa1343890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
