AlfalfaGEDB | Msa0296900

M. sativa cultivar zhongmu-4 / Msa0296900

KEGG: -
GO: -
PFAM: PF00931.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296900	XP_003596687.2	69.074	983	276	12	24	984	209	1185	0.0	1303

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296900	sp\|V9M398\|RUN1_VITRO	36.401	739	422	15	4	704	160	888	3.60e-120	401
Msa0296900	sp\|V9M398\|RUN1_VITRO	30.961	281	160	10	452	706	759	1031	2.50e-16	88.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296900	G7IM52	69.074	983	276	12	24	984	209	1185	0.0	1303

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022470	Msa0296900	0.810354	1.202018e-50	-8.615850e-47
Msa0030800	Msa0296900	0.801904	7.225742e-49	-8.615850e-47
Msa0043740	Msa0296900	0.839837	1.247785e-57	-8.615850e-47
Msa0051960	Msa0296900	0.833842	4.227158e-56	-8.615850e-47
Msa0070120	Msa0296900	0.802020	6.837821e-49	-8.615850e-47
Msa0090090	Msa0296900	0.842658	2.261231e-58	-8.615850e-47
Msa0094710	Msa0296900	0.809987	1.441913e-50	-8.615850e-47
Msa0095940	Msa0296900	0.815518	8.872706e-52	-8.615850e-47
Msa0101960	Msa0296900	0.834156	3.527863e-56	-8.615850e-47
Msa0117650	Msa0296900	0.804481	2.116355e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296900	MtrunA17_Chr2g0319851	69.074	983	276	12	24	984	209	1185	0.0	1303
Msa0296900	MtrunA17_Chr2g0319921	56.776	974	368	13	59	984	205	1173	0.0	1016
Msa0296900	MtrunA17_Chr2g0319821	56.455	976	360	16	24	959	201	1151	0.0	1014
Msa0296900	MtrunA17_Chr7g0242801	54.582	1004	391	15	24	984	246	1227	0.0	968
Msa0296900	MtrunA17_Chr7g0242811	51.947	976	406	13	24	984	200	1127	0.0	937
Msa0296900	MtrunA17_Chr5g0394041	54.581	775	290	14	245	984	1	748	0.0	747
Msa0296900	MtrunA17_Chr7g0242751	58.348	557	228	2	24	576	203	759	0.0	668
Msa0296900	MtrunA17_Chr7g0243031	53.101	661	275	12	339	984	1	641	0.0	603
Msa0296900	MtrunA17_Chr7g0242781	57.421	411	172	1	72	479	1	411	1.24e-170	504
Msa0296900	MtrunA17_Chr4g0042011	38.358	889	492	22	4	875	158	1007	1.20e-166	517

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296900	AT5G17680.2	34.274	744	426	13	12	709	157	883	5.25e-125	411
Msa0296900	AT5G17680.2	26.984	315	153	7	468	706	705	1018	2.14e-17	88.6
Msa0296900	AT5G17680.1	34.426	732	422	12	24	709	163	882	1.28e-124	410
Msa0296900	AT5G17680.1	26.984	315	153	7	468	706	704	1017	2.21e-17	88.2
Msa0296900	AT4G12010.1	32.855	767	432	10	18	710	164	921	4.34e-108	363
Msa0296900	AT5G18360.1	33.427	709	396	14	24	703	164	825	2.82e-106	352
Msa0296900	AT5G44510.4	31.058	879	482	23	19	794	184	1041	2.77e-104	352
Msa0296900	AT5G44510.2	31.058	879	482	23	19	794	184	1041	4.48e-104	352
Msa0296900	AT5G44510.3	31.058	879	482	23	19	794	184	1041	6.57e-104	351
Msa0296900	AT5G44510.1	31.058	879	482	23	19	794	184	1041	9.43e-104	351

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Find 194 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAGTACCTTGATA+TGG	0.343182	2_3:-50472466	Msa0296900:CDS
AAAATTCCAGATACTTCAGA+AGG	0.580013	2_3:+50474704	None:intergenic
AAACTTAAAACTCTACCTCT+AGG	0.542836	2_3:-50472288	Msa0296900:CDS
AAAGTGAGAGGTCAATGTCT+TGG	0.531549	2_3:-50476603	None:intergenic
AAATATCTAATAACATCAAT+AGG	0.397900	2_3:-50472350	Msa0296900:CDS
AAATATGCTAGACTTTCAAG+AGG	0.608857	2_3:+50472108	None:intergenic
AAATCCAGCTTCCCTACAAT+TGG	0.445746	2_3:-50471048	Msa0296900:CDS
AAATCCTTCCGCCCTGCATT+TGG	0.343825	2_3:+50473278	None:intergenic
AAATGTCTCCAAATGCAGGG+CGG	0.744690	2_3:-50473286	Msa0296900:CDS
AACTGGGGAAGAAAATTGTT+CGG	0.504279	2_3:-50474064	Msa0296900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATGAGGTGACAAAAAA+TGG	-	chr2_3:50471266-50471285	Msa0296900:CDS	30.0%
GAGTATTAAAGTTGGGAAAT+AGG	-	chr2_3:50471308-50471327	Msa0296900:CDS	30.0%
AAATATTTGTTTGTGGTGGT+CGG	+	chr2_3:50471608-50471627	None:intergenic	30.0%
GTTGAAATATTTGTTTGTGG+TGG	+	chr2_3:50471612-50471631	None:intergenic	30.0%
TGATGTACTAAACATGAATG+CGG	+	chr2_3:50471760-50471779	None:intergenic	30.0%
TAAGAAAACAACATACGAGT+TGG	+	chr2_3:50472444-50472463	None:intergenic	30.0%
GATTGAAAATATTGTTCAGG+AGG	-	chr2_3:50472518-50472537	Msa0296900:CDS	30.0%
CTCAAAGAATGATGAATTTC+GGG	-	chr2_3:50472635-50472654	Msa0296900:CDS	30.0%
AGCAAAATTTATAGAGATGG+TGG	-	chr2_3:50472765-50472784	Msa0296900:intron	30.0%
AAAATTCCAGATACTTCAGA+AGG	+	chr2_3:50472858-50472877	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	50470970	50476611	50470970	ID=Msa0296900;Name=Msa0296900
chr2_3	mRNA	50470970	50476611	50470970	ID=Msa0296900-mRNA-1;Parent=Msa0296900;Name=Msa0296900-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|984
chr2_3	exon	50476537	50476611	50476537	ID=Msa0296900-mRNA-1:exon:15865;Parent=Msa0296900-mRNA-1
chr2_3	exon	50473983	50475044	50473983	ID=Msa0296900-mRNA-1:exon:15864;Parent=Msa0296900-mRNA-1
chr2_3	exon	50473077	50473349	50473077	ID=Msa0296900-mRNA-1:exon:15863;Parent=Msa0296900-mRNA-1
chr2_3	exon	50471909	50472781	50471909	ID=Msa0296900-mRNA-1:exon:15862;Parent=Msa0296900-mRNA-1
chr2_3	exon	50470970	50471641	50470970	ID=Msa0296900-mRNA-1:exon:15861;Parent=Msa0296900-mRNA-1
chr2_3	CDS	50476537	50476611	50476537	ID=Msa0296900-mRNA-1:cds;Parent=Msa0296900-mRNA-1
chr2_3	CDS	50473983	50475044	50473983	ID=Msa0296900-mRNA-1:cds;Parent=Msa0296900-mRNA-1
chr2_3	CDS	50473077	50473349	50473077	ID=Msa0296900-mRNA-1:cds;Parent=Msa0296900-mRNA-1
chr2_3	CDS	50471909	50472781	50471909	ID=Msa0296900-mRNA-1:cds;Parent=Msa0296900-mRNA-1
chr2_3	CDS	50470970	50471641	50470970	ID=Msa0296900-mRNA-1:cds;Parent=Msa0296900-mRNA-1

Gene Sequence

>Msa0296900

ATGTCTTGGACAAATGCCACTTTGTTGAGTGGGTGGAGAAACAATGTGTTGTTGTGGGAAAGATTAGAGGTTGATGAGGTTATAAAAACACTGGGCTATAAATCATCAGGGTTTGATGACCTTGTTGGGATTGAACCTCATGTAGAAGCATTGGAATTCCTTTTAAAATTAGACTCAAAGAATGATGAATTTCGGGTTATAGGAGTTTGGGGGATGGGTGGCATAGGAAAGACAACACTTACTACTATCTTGTATGATAGAATATCTTGTGGGTTTGGTGCTTGTTGTTTCATAGAGAATGTAAGCAAAATTTATAGAGATGGTGGTGCTATTGCTATTCAGAAACAAATCCTTTGTCAAGCATTCGACGAGAAAAATCTAGAGAGCTATAGTCCTTCTGAAGTATCTGGAATTTTAAGAAATAGACTAAGCAACATAAATGTGCTTGTAGTTCTCGACAATGTTGAAGGATTAAAGCAAGTGCAAGAGTTGGCGATTGATTCCAAATTTCTTCACGCAGGGAGTAGAATGATCATTACAACTAGGGATGTGCATATTCTAAAAGTTTTTGGAGCACATGAAGTGTATGAGGTTCCATTGTTGAATAGCAACGACGCTCATGAACTTTTTTGTAAAAAAGTCTTCCAAAATGAAGGCCAAAGTAGCAATTGTGTTGAGTTGATTCCTGAGGTACTCGGATATGCACAACATCTTCCATTGGCAATTAAAGTAGTGGGTTCTTTCTTGTGTACCCGAGATGCTACCCAATGGAGAGATGCATTGGATAGGTTGAGGAACAATCCACACAATGATGTTATGGATGTGCTTCAAATGAGTGTTGACGAACTACAACATGAAGAGAAGGAAATATTTATACACATTGCTTGTTTCTTTAAAGGGGAGAGGGAAGATTACGTAAAGAGAATTCTAGATGCTTGTGGATTGCACCCTCACATCGGAATTCAAAGAATCCTCGAAAAATCACTCATTACCATAAAAAACGAGGAGATTCATATGCATGATATGTTACAAGAACTGGGGAAGAAAATTGTTCGGCATGGATTTCTCGAAGAGCCAGGATTTTGGAGTAGATTATGGCGATACAATGATTTCTATCATGTCTTGATGACAGAAACGGGAACGAATAATGTTAGAGCCATAGTTCTAGATCAGAAAGAAAATGTCTCCAAATGCAGGGCGGAAGGATTTTCGAATATGAGGAACCTTGCACTGCTCATATTGTATCACAACAACTTTTCAGGAAATCTCAGTTTTCTTTCCAACAACCTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATCTTGTGGAATTGAATATGCCTGATAGTAGCATTCAAAGACTATGGGAAGGATGCAAGGAATTCCCCAGTTTGAAAAGGATGGATTTGAGCAACTCCAAAAAATTTAGAGAGACCCCAGAGTTTTCTCGCAACTCAATACTTGAGCGGCTTGATTTTACAGGATGCACAAACTTAATACAAGTCCATTCATCAATTGGTCATCTTACAAAACTTGCTTTCTTGAGTTTGCAAAACTGTAGCAGTTTAGTGAACCTCGACTTTGGCAGTGTATCAAATTTGAGTTCTTTGAGAGTTCTACGCCTTTGTGGTTGCACAAAACTTGAAAAGACGCCAAATTTTACTGGGACATCAAAACTTGAGTACCTTGATATGGAAAGATGCACAAGTTTATCCATAGTTCATGAATCCATTGGGGTTCTTAAATACCTTACATTCTTGAGTTTGAGAGGCTGCACAAATCTTGTTGAAATATCTAATAACATCAATAGGATGATATCTCTTAGAACTCTAGATTTATGTGGGTGCTCGAAACTTAAAACTCTACCTCTAGGACAGACTTTCCATGATTCTCATTTGGAGTCTTTGATTTCTCTGGATCTAAGCTTTTGCGATCTTCATGAAGTACCTGCTGCTATTGGAGAGCTAAAATGTTTAGAAAGACTAAACCTACAAGGAAATAGCTTTGATTCACTACCTTATGAAATCAATCCTCTTGAAAGTCTAGCATATTTAAACTTATCTCATTGTCACAACCTTCAAACTGTTAACTGCCTGCCTACAAAAAGTGATTCTTCGGGAGAAAGTGATTCTTCGGGATCTCGTCATGACTATAGGTCAGGAGTATATTTTTTCGACTGCCCCAAGTTGTTTAGACATCTTGGAAACCAATTCCTAGAAAGATATTATACATGGCTACAAGTACAATATAAGTATCCCAGGTGCATTCCGGGTAGCTGTGACATTGTTGTTCCTTGGGATTCGAATGACACTCCACCGTGGTTCAAGTACCGATTTGATGGGGATTCAATAGTAAGGATAGTAACTACTGAAGGTGAAGAGAATGTGTGGTTCGGCTTTGTCTTCTGCGTGGTATTTGAAAATGGTCCTGCAAATTCTGTTTCTCTACAAGATTCATTTACATCGGCATTGCCACATCCTTTTTATCTTTCTTTTGAAAGTGAGCACACAGAAGAACGCTTCGATATGCCACTTAGTTTGAAACTGGACAAAGTTGATGGCTCCAAACATCTGTGGCTAATCTATATCTCCCGTTTCCATTGCCATTTTGCGAAAACAGGAGCTCATATCACATTTAAAGCCTGTCCTAGTTTGATCATAAAGAAATGGGGTTTGCAGAAACTAATCATGACGGAATACAGATTACCACTTCTATTACTTGATACAAGTTCTTCTCATGACATATTGAATTGGTTTACATATGGTGATCCTCACACTATTTTCTTTGATCGTGTACAAGAAAGCAGCAGCCGGTCTGGACCTAAAATCCAGCTTCCCTACAATTGGTCGGTTATCAACAAAGAAGAAATTGAGAATTCTCAAACCAAGTCAAAAGAAATCGAACTTTATAATCTGGGTCTTTAA

Protein sequence

>Msa0296900

MSWTNATLLSGWRNNVLLWERLEVDEVIKTLGYKSSGFDDLVGIEPHVEALEFLLKLDSKNDEFRVIGVWGMGGIGKTTLTTILYDRISCGFGACCFIENVSKIYRDGGAIAIQKQILCQAFDEKNLESYSPSEVSGILRNRLSNINVLVVLDNVEGLKQVQELAIDSKFLHAGSRMIITTRDVHILKVFGAHEVYEVPLLNSNDAHELFCKKVFQNEGQSSNCVELIPEVLGYAQHLPLAIKVVGSFLCTRDATQWRDALDRLRNNPHNDVMDVLQMSVDELQHEEKEIFIHIACFFKGEREDYVKRILDACGLHPHIGIQRILEKSLITIKNEEIHMHDMLQELGKKIVRHGFLEEPGFWSRLWRYNDFYHVLMTETGTNNVRAIVLDQKENVSKCRAEGFSNMRNLALLILYHNNFSGNLSFLSNNLRYLLWHGYPFTSLPSNFEPYYLVELNMPDSSIQRLWEGCKEFPSLKRMDLSNSKKFRETPEFSRNSILERLDFTGCTNLIQVHSSIGHLTKLAFLSLQNCSSLVNLDFGSVSNLSSLRVLRLCGCTKLEKTPNFTGTSKLEYLDMERCTSLSIVHESIGVLKYLTFLSLRGCTNLVEISNNINRMISLRTLDLCGCSKLKTLPLGQTFHDSHLESLISLDLSFCDLHEVPAAIGELKCLERLNLQGNSFDSLPYEINPLESLAYLNLSHCHNLQTVNCLPTKSDSSGESDSSGSRHDYRSGVYFFDCPKLFRHLGNQFLERYYTWLQVQYKYPRCIPGSCDIVVPWDSNDTPPWFKYRFDGDSIVRIVTTEGEENVWFGFVFCVVFENGPANSVSLQDSFTSALPHPFYLSFESEHTEERFDMPLSLKLDKVDGSKHLWLIYISRFHCHFAKTGAHITFKACPSLIIKKWGLQKLIMTEYRLPLLLLDTSSSHDILNWFTYGDPHTIFFDRVQESSSRSGPKIQLPYNWSVINKEEIENSQTKSKEIELYNLGL*