AlfalfaGEDB | Msa0335080

M. sativa cultivar zhongmu-4 / Msa0335080

KEGG: -
GO: -
PFAM: PF00931.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0335080	XP_003596687.2	68.528	985	280	12	24	986	209	1185	0.0	1297

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0335080	sp\|V9M398\|RUN1_VITRO	36.130	739	424	15	4	704	160	888	3.55e-119	399
Msa0335080	sp\|V9M398\|RUN1_VITRO	30.605	281	161	10	452	706	759	1031	6.49e-16	87.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009640	Msa0335080	0.814012	1.912961e-51	-8.615850e-47
Msa0022470	Msa0335080	0.829482	5.022065e-55	-8.615850e-47
Msa0030800	Msa0335080	0.809853	1.541224e-50	-8.615850e-47
Msa0043740	Msa0335080	0.861272	1.152464e-63	-8.615850e-47
Msa0051960	Msa0335080	0.840108	1.060539e-57	-8.615850e-47
Msa0078210	Msa0335080	0.803841	2.875498e-49	-8.615850e-47
Msa0090090	Msa0335080	0.865150	7.275490e-65	-8.615850e-47
Msa0090380	Msa0335080	0.801822	7.512300e-49	-8.615850e-47
Msa0092970	Msa0335080	0.813251	2.813581e-51	-8.615850e-47
Msa0094710	Msa0335080	0.824771	6.738899e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0335080	MtrunA17_Chr2g0319851	68.528	985	280	12	24	986	209	1185	0.0	1297
Msa0335080	MtrunA17_Chr2g0319921	56.660	976	368	14	59	986	205	1173	0.0	1013
Msa0335080	MtrunA17_Chr2g0319821	56.135	978	362	16	24	961	201	1151	0.0	1013
Msa0335080	MtrunA17_Chr7g0242801	54.374	1006	392	15	24	986	246	1227	0.0	968
Msa0335080	MtrunA17_Chr7g0242811	51.984	983	397	15	24	986	200	1127	0.0	937
Msa0335080	MtrunA17_Chr5g0394041	54.698	777	288	14	245	986	1	748	0.0	748
Msa0335080	MtrunA17_Chr7g0242751	58.528	557	227	2	24	576	203	759	0.0	671
Msa0335080	MtrunA17_Chr7g0243031	53.163	664	272	13	339	986	1	641	0.0	603
Msa0335080	MtrunA17_Chr7g0242781	57.421	411	172	1	72	479	1	411	1.51e-170	504
Msa0335080	MtrunA17_Chr4g0042011	38.539	890	491	22	4	877	158	1007	4.78e-167	518

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0335080	AT5G17680.2	34.274	744	426	13	12	709	157	883	6.22e-125	411
Msa0335080	AT5G17680.2	27.619	315	151	8	468	706	705	1018	1.50e-17	89.0
Msa0335080	AT5G17680.1	34.426	732	422	12	24	709	163	882	1.63e-124	410
Msa0335080	AT5G17680.1	27.619	315	151	8	468	706	704	1017	1.59e-17	89.0
Msa0335080	AT4G12010.1	32.986	767	431	10	18	710	164	921	9.72e-109	365
Msa0335080	AT5G18360.1	33.568	709	395	14	24	703	164	825	8.13e-107	353
Msa0335080	AT5G44510.3	29.555	988	552	27	19	885	184	1148	1.81e-105	355
Msa0335080	AT5G44510.4	31.172	879	481	23	19	794	184	1041	8.72e-105	353
Msa0335080	AT5G44510.2	31.172	879	481	23	19	794	184	1041	1.09e-104	353
Msa0335080	AT5G44510.1	31.172	879	481	23	19	794	184	1041	2.30e-104	353

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Find 193 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAGTACCTTGATA+TGG	0.343182	2_4:+54150364	Msa0335080:CDS
AAAATTCCAGATACTTCAGA+AGG	0.580013	2_4:-54148128	None:intergenic
AAACTTAAAACTCTACCTCT+AGG	0.542836	2_4:+54150542	Msa0335080:CDS
AAAGTGAGAGGTCAATGTCT+TGG	0.531549	2_4:+54146230	None:intergenic
AAATATCTAATAACATCAAT+AGG	0.397900	2_4:+54150480	Msa0335080:CDS
AAATATGCTAGACTTTCAAG+AGG	0.608857	2_4:-54150722	None:intergenic
AAATCCAGCTTCCCTACAAT+TGG	0.445746	2_4:+54151788	Msa0335080:CDS
AAATCCTTCGGCCCTGCATT+TGG	0.343825	2_4:-54149554	None:intergenic
AACTGGGGAAGAAAATTGTT+CGG	0.504279	2_4:+54148768	Msa0335080:CDS
AAGAAAATGTCTCCAAATGC+AGG	0.439928	2_4:+54149542	Msa0335080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATGAGGTGACAAAAAA+TGG	+	chr2_4:54146539-54146558	Msa0335080:intron	30.0%
GAGTATTAAAGTTGGGAAAT+AGG	+	chr2_4:54146581-54146600	Msa0335080:intron	30.0%
AAATATTTGTTTGTGGTGGT+CGG	-	chr2_4:54146881-54146900	None:intergenic	30.0%
GTTGAAATATTTGTTTGTGG+TGG	-	chr2_4:54146885-54146904	None:intergenic	30.0%
TGATGTACTAAACATGAATG+CGG	-	chr2_4:54147033-54147052	None:intergenic	30.0%
TAAGAAAACAACATACGAGT+TGG	-	chr2_4:54147717-54147736	None:intergenic	30.0%
GATTGAAAATATTGTTCAGG+AGG	+	chr2_4:54147791-54147810	Msa0335080:intron	30.0%
CTCAAAGAATGATGAATTTC+GGG	+	chr2_4:54147908-54147927	Msa0335080:CDS	30.0%
AGCAAAATTTATAGAGATGG+TGG	+	chr2_4:54148038-54148057	Msa0335080:CDS	30.0%
AAAATTCCAGATACTTCAGA+AGG	-	chr2_4:54148131-54148150	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	54146244	54151888	54146244	ID=Msa0335080;Name=Msa0335080
chr2_4	mRNA	54146244	54151888	54146244	ID=Msa0335080-mRNA-1;Parent=Msa0335080;Name=Msa0335080-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|986
chr2_4	exon	54146244	54146318	54146244	ID=Msa0335080-mRNA-1:exon:16303;Parent=Msa0335080-mRNA-1
chr2_4	exon	54147810	54148871	54147810	ID=Msa0335080-mRNA-1:exon:16304;Parent=Msa0335080-mRNA-1
chr2_4	exon	54149505	54149777	54149505	ID=Msa0335080-mRNA-1:exon:16305;Parent=Msa0335080-mRNA-1
chr2_4	exon	54150071	54150943	54150071	ID=Msa0335080-mRNA-1:exon:16306;Parent=Msa0335080-mRNA-1
chr2_4	exon	54151211	54151888	54151211	ID=Msa0335080-mRNA-1:exon:16307;Parent=Msa0335080-mRNA-1
chr2_4	CDS	54146244	54146318	54146244	ID=Msa0335080-mRNA-1:cds;Parent=Msa0335080-mRNA-1
chr2_4	CDS	54147810	54148871	54147810	ID=Msa0335080-mRNA-1:cds;Parent=Msa0335080-mRNA-1
chr2_4	CDS	54149505	54149777	54149505	ID=Msa0335080-mRNA-1:cds;Parent=Msa0335080-mRNA-1
chr2_4	CDS	54150071	54150943	54150071	ID=Msa0335080-mRNA-1:cds;Parent=Msa0335080-mRNA-1
chr2_4	CDS	54151211	54151888	54151211	ID=Msa0335080-mRNA-1:cds;Parent=Msa0335080-mRNA-1

Gene Sequence

>Msa0335080

ATGTCTTGGACAAATGCCACTTTGTTGAGTGGGTGGAGAAACAATGTGTTGTTGTGGGAAAGATTAGAGGTTGATGAGGTTATAAAAACACTGGGCTATAAATCATCAGGGTTTGATGACCTTGTTGGGATTGAACCTCATGTAGAAGCATTGGAATTCCTTTTAAAATTAGACTCAAAGAATGATGAATTTCGGGTTATAGGAGTTTGGGGGATGGGTGGCATAGGAAAGACAACACTTACTACTATCTTGTATGATAGAATATCTTGTGGGTTTGGTGCTTGTTGTTTCATAGAGAATGTAAGCAAAATTTATAGAGATGGTGGTGCTATTGCTATTCAGAAACAAATCCTTTGTCAAGCATTCGACGAGAAAAATCTAGAGAGCTATAGTCCTTCTGAAGTATCTGGAATTTTAAGAAATAGACTAAGCAACATAAATGTGCTTGTAGTTCTCGACAATGTTGAAGGATTAAAGCAAGTGCAAGAGTTGGCGATTGATTCCAAATTTCTTCACGCAGGGAGTAGAATGATCATTACAACTAGGGATGTGCATATTCTAAAAGTTTTTGGAGCACATGAAGTGTATGAGGTTCCATTGTTGAATAGCAACGACGCTCATGAACTTTTTTGTAAAAAAGTCTTCCAAAATGAAGGCCAAAGTAGCAATTGTGTTGAGTTGATTCCTGAGGTACTCGGATATGCACAACATCTTCCATTGGCAATTAAAGTAGTGGGTTCTTTCTTGTGTACCCGAGATGCTACCCAATGGAGAGATGCATTGGATAGGTTGAGGAACAATCCACACAATGATGTTATGGATGTGCTTCAAATGAGTGTTGACGAACTACAACATGAAGAGAAGGAAATATTTATACACATTGCTTGTTTCTTTAAAGGGGAGAGGGAAGATTACGTAAAGAGAATTCTAGATGCTTGTGGATTGCACCCTCACATCGGAATTCAAAGAATCCTCGAAAAATCACTCATTACCATAAAAAACGAGGAGATTCATATGCATGATATGTTACAAGAACTGGGGAAGAAAATTGTTCGGCATGGATTTCTCGAAGAGCCAGGATTTTGGAGTAGATTATGGCGATACAATGATTTCTATCATGTCTTGATGACAGAAACGGGAACGAATAATGTTAGAGCCATAGTTCTAGATCAGAAAGAAAATGTCTCCAAATGCAGGGCCGAAGGATTTTCGAATATGAGGAACCTTGCACTGCTCATATTGTATCACAACAACTTTTCAGGAAATCTCAGTTTTCTTTCCAACAACCTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATCTTGTGGAATTGAATATGCCTGATAGTAGCATTCAAAGACTATGGGAAGGATGCAAGGAATTCCCCAGTTTGAAAAGGATGGATTTGAGCAACTCCAAAAATTTTAGAGAGACCCCAGAGTTTTCTCGCAACTCAATACTTGAGCGGCTTGATTTTACAGGATGCACAAACTTATTACAAGTCCATTCATCAATTGGTCATCTTACAAAACTTGCTTTCTTGAGTTTGCAAAACTGTAGCAGTTTGGTGAACCTCGACTTTGGCAGTGTATCAAATTTGAGTTCTTTGAGAGTTCTACGCCTTTGTGGTTGCACAAAACTTGAAAAGACGCCAAATTTTACTGGGACATCAAAACTTGAGTACCTTGATATGGAAAGATGCACAAGTTTATCCATAGTTCATGAATCCATTGGGGTTCTTAAATACCTTACATTCTTGAGTTTGAGAGGCTGCACAAATCTTGTTGAAATATCTAATAACATCAATAGGATGATATCTCTTAGAACTCTAGATTTATGTGGGTGCTCGAAACTTAAAACTCTACCTCTAGGACAGACTTTCCATGATTCTCATTTGGAGTCTTTGATTTCTCTGGATCTAAGCTTTTGCGATCTTCATGAAGTACCTGCTGCTATTGGAGAGCTAAAATGTTTAGAAAGACTAAACCTACAAGGAAATAGCTTTGATTCACTACCTTATGAAATCAATCCTCTTGAAAGTCTAGCATATTTAAACTTATCTCATTGTCACAACCTTCAAACTATTAACTGCCTGCCTACAAAAAGTGATTCTTCGGGGGAAAGTGATTCTTCGGGATCTCGTCATGACTATAGGTCAGGAGTATATTTTTTCGACTGCCCCAAGTTGTTTAGACATCTTGGAAACCAATTCCTAGAAAGATATTATACATGGCTACAAGTACAATATAAGTATCCCAGGTGCATTCCGGGTAGCTGTGACATTGTTGTTCCTTGGGATTCGAATGACACTCCACCGTGGTTCAAGTACCGATTTGATGGGGATTCAATAGTAAGGATAGTATTAGTAACTACTGAAGGTGAAGAGAATGTGTGGTTCGGCTTTGTCTTCTGCGTGGTATTTGAAAATGGTCCTGCAAATTCTGTTTCTCTACAAGATTCATTTACATCGGCATTGCCACATCCTTTTTATCTTTCTTTTGAAAGTGAGCACACAGAAGAACGCTTCGATATGCCACTTAGTTTGAAACTGGACAAAGTTGATGGCTCCAAACATCTGTGGCTAATCTATATCTCCCGTTTCCATTGCCATTTTGCGAAAACAGGAGCTCATATCACATTTAAAGCCTGTCCTAGTTTGATCATAAAGAAATGGGGTATGCAGAAACTAATCATGACGGAATACAGATTACCACTTCTATTACTTGATACAAGTTCTTCTCATGACGTATTGAATTGGTTTACATATGGTGATCCTCACACTATTTTCTTTGATCGTGTACAAGAAAGCAGCAGCCGGTCTGGACCTAAAATCCAGCTTCCCTACAATTGGTCGGTTATCAACAAAGAAGAAATTGAGAATTCTCAAACCAAGTCAAAAGAAATCGAACTTTATAATCTGGGTCTTTAA

Protein sequence

>Msa0335080

MSWTNATLLSGWRNNVLLWERLEVDEVIKTLGYKSSGFDDLVGIEPHVEALEFLLKLDSKNDEFRVIGVWGMGGIGKTTLTTILYDRISCGFGACCFIENVSKIYRDGGAIAIQKQILCQAFDEKNLESYSPSEVSGILRNRLSNINVLVVLDNVEGLKQVQELAIDSKFLHAGSRMIITTRDVHILKVFGAHEVYEVPLLNSNDAHELFCKKVFQNEGQSSNCVELIPEVLGYAQHLPLAIKVVGSFLCTRDATQWRDALDRLRNNPHNDVMDVLQMSVDELQHEEKEIFIHIACFFKGEREDYVKRILDACGLHPHIGIQRILEKSLITIKNEEIHMHDMLQELGKKIVRHGFLEEPGFWSRLWRYNDFYHVLMTETGTNNVRAIVLDQKENVSKCRAEGFSNMRNLALLILYHNNFSGNLSFLSNNLRYLLWHGYPFTSLPSNFEPYYLVELNMPDSSIQRLWEGCKEFPSLKRMDLSNSKNFRETPEFSRNSILERLDFTGCTNLLQVHSSIGHLTKLAFLSLQNCSSLVNLDFGSVSNLSSLRVLRLCGCTKLEKTPNFTGTSKLEYLDMERCTSLSIVHESIGVLKYLTFLSLRGCTNLVEISNNINRMISLRTLDLCGCSKLKTLPLGQTFHDSHLESLISLDLSFCDLHEVPAAIGELKCLERLNLQGNSFDSLPYEINPLESLAYLNLSHCHNLQTINCLPTKSDSSGESDSSGSRHDYRSGVYFFDCPKLFRHLGNQFLERYYTWLQVQYKYPRCIPGSCDIVVPWDSNDTPPWFKYRFDGDSIVRIVLVTTEGEENVWFGFVFCVVFENGPANSVSLQDSFTSALPHPFYLSFESEHTEERFDMPLSLKLDKVDGSKHLWLIYISRFHCHFAKTGAHITFKACPSLIIKKWGMQKLIMTEYRLPLLLLDTSSSHDVLNWFTYGDPHTIFFDRVQESSSRSGPKIQLPYNWSVINKEEIENSQTKSKEIELYNLGL*