Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344110 | XP_004496806.1 | 68.852 | 305 | 88 | 3 | 4 | 301 | 276 | 580 | 6.33e-135 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344110 | A0A1S2XZ63 | 68.852 | 305 | 88 | 3 | 4 | 301 | 276 | 580 | 3.03e-135 | 406 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1344110 | Msa1344130 | 0.854412 | 1.252145e-61 | -8.615850e-47 |
| Msa0319170 | Msa1344110 | 0.801660 | 8.107564e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344110 | MtrunA17_Chr3g0093911 | 66.993 | 306 | 91 | 5 | 6 | 302 | 1 | 305 | 7.95e-131 | 375 |
| Msa1344110 | MtrunA17_Chr3g0077801 | 64.667 | 300 | 99 | 3 | 9 | 301 | 4 | 303 | 3.48e-130 | 374 |
| Msa1344110 | MtrunA17_Chr7g0252101 | 66.234 | 308 | 91 | 7 | 4 | 301 | 82 | 386 | 4.68e-129 | 374 |
| Msa1344110 | MtrunA17_Chr1g0207351 | 67.667 | 300 | 84 | 5 | 10 | 296 | 16 | 315 | 1.23e-128 | 370 |
| Msa1344110 | MtrunA17_Chr4g0075971 | 67.105 | 304 | 93 | 3 | 5 | 301 | 252 | 555 | 5.42e-127 | 375 |
| Msa1344110 | MtrunA17_Chr3g0077901 | 59.076 | 303 | 117 | 3 | 5 | 300 | 20 | 322 | 1.55e-120 | 350 |
| Msa1344110 | MtrunA17_Chr3g0077851 | 60.839 | 286 | 105 | 3 | 22 | 300 | 1 | 286 | 4.28e-116 | 337 |
| Msa1344110 | MtrunA17_Chr6g0488101 | 56.766 | 303 | 117 | 5 | 4 | 296 | 97 | 395 | 6.91e-106 | 316 |
| Msa1344110 | MtrunA17_Chr6g0488271 | 56.436 | 303 | 118 | 5 | 4 | 296 | 57 | 355 | 1.92e-105 | 313 |
| Msa1344110 | MtrunA17_Chr7g0243331 | 57.877 | 292 | 116 | 3 | 11 | 296 | 6 | 296 | 3.52e-105 | 310 |
| Msa1344110 | MtrunA17_Chr3g0112311 | 57.000 | 300 | 117 | 4 | 6 | 296 | 1 | 297 | 7.85e-105 | 310 |
| Msa1344110 | MtrunA17_Chr1g0209051 | 69.778 | 225 | 58 | 4 | 87 | 301 | 1 | 225 | 1.09e-96 | 286 |
| Msa1344110 | MtrunA17_Chr3g0122991 | 49.835 | 303 | 89 | 5 | 8 | 295 | 2 | 256 | 4.01e-89 | 267 |
| Msa1344110 | MtrunA17_Chr6g0452641 | 54.152 | 277 | 104 | 6 | 31 | 296 | 15 | 279 | 1.12e-76 | 237 |
| Msa1344110 | MtrunA17_Chr3g0123471 | 54.054 | 222 | 90 | 5 | 87 | 300 | 1 | 218 | 7.80e-63 | 199 |
| Msa1344110 | MtrunA17_Chr7g0243391 | 48.585 | 212 | 105 | 2 | 4 | 213 | 16 | 225 | 6.49e-51 | 168 |
| Msa1344110 | MtrunA17_Chr1g0196231 | 58.108 | 148 | 57 | 3 | 2 | 148 | 223 | 366 | 5.41e-49 | 167 |
| Msa1344110 | MtrunA17_Chr1g0202841 | 70.229 | 131 | 31 | 3 | 180 | 302 | 2 | 132 | 1.88e-48 | 159 |
| Msa1344110 | MtrunA17_Chr1g0206951 | 62.500 | 112 | 41 | 1 | 9 | 119 | 2 | 113 | 2.99e-39 | 134 |
| Msa1344110 | MtrunA17_Chr1g0187941 | 63.636 | 121 | 36 | 3 | 184 | 296 | 6 | 126 | 3.35e-39 | 134 |
| Msa1344110 | MtrunA17_Chr4g0075861 | 60.656 | 122 | 48 | 0 | 5 | 126 | 252 | 373 | 5.19e-35 | 130 |
| Msa1344110 | MtrunA17_Chr6g0459061 | 29.252 | 294 | 195 | 6 | 13 | 298 | 17 | 305 | 1.95e-26 | 107 |
| Msa1344110 | MtrunA17_Chr6g0486591 | 53.922 | 102 | 39 | 2 | 206 | 299 | 1 | 102 | 5.98e-25 | 98.2 |
| Msa1344110 | MtrunA17_Chr1g0196241 | 76.786 | 56 | 13 | 0 | 245 | 300 | 1 | 56 | 1.90e-21 | 86.7 |
| Msa1344110 | MtrunA17_Chr7g0238781 | 39.860 | 143 | 81 | 4 | 29 | 169 | 19 | 158 | 3.39e-18 | 80.1 |
| Msa1344110 | MtrunA17_Chr1g0209191 | 74.468 | 47 | 12 | 0 | 256 | 302 | 1 | 47 | 9.39e-18 | 77.0 |
| Msa1344110 | MtrunA17_Chr1g0209061 | 71.429 | 42 | 12 | 0 | 4 | 45 | 66 | 107 | 4.06e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCTTTATTCCTATAAA+TGG | 0.143180 | tig0006790:+32834 | Msa1344110:intergenic |
| TCTCTAATCAATCCATTTAT+AGG | 0.150879 | tig0006790:-32846 | Msa1344110:CDS |
| AACGAAATTTGAATAATTAA+TGG | 0.172360 | tig0006790:+33011 | Msa1344110:intergenic |
| ATAAAACTTCCTTATACTTT+AGG | 0.215488 | tig0006790:-32515 | Msa1344110:CDS |
| TTTGAATAATTAATGGTTCT+TGG | 0.243180 | tig0006790:+33018 | Msa1344110:intergenic |
| TACCATGGCTTGCTTGCTTT+TGG | 0.258225 | tig0006790:-32768 | Msa1344110:CDS |
| AATTTATTGGAGAAATTTCT+TGG | 0.271876 | tig0006790:-33045 | Msa1344110:CDS |
| GTCGTCGAAATTTAGTCTTT+TGG | 0.297111 | tig0006790:+33115 | Msa1344110:intergenic |
| CTCTCATATCCCCACCTGTT+CGG | 0.300486 | tig0006790:+32339 | Msa1344110:intergenic |
| TTGGCCAGATATGCTAATAA+AGG | 0.301918 | tig0006790:+32968 | Msa1344110:intergenic |
| GACGACTTCTTTCAGTTTGT+TGG | 0.311838 | tig0006790:-33098 | Msa1344110:CDS |
| TATAATTAACTTCAAAGGTT+GGG | 0.312615 | tig0006790:+32802 | Msa1344110:intergenic |
| GTTAACCAACCTAAAGTATA+AGG | 0.352337 | tig0006790:+32506 | Msa1344110:intergenic |
| TTTGTGATAACAAGATAAAA+AGG | 0.352731 | tig0006790:-33192 | Msa1344110:intron |
| TCTCATATCCCCACCTGTTC+GGG | 0.353939 | tig0006790:+32340 | Msa1344110:intergenic |
| AGTTTATCACTTGGATATGA+TGG | 0.357405 | tig0006790:-32943 | Msa1344110:CDS |
| ATGCTCTGAGGAATTTGTTT+TGG | 0.363825 | tig0006790:-32742 | Msa1344110:CDS |
| AAGAGAACTGTGAACTTCCT+TGG | 0.414577 | tig0006790:-33157 | Msa1344110:CDS |
| ATGCATTGAGCAACCCGAAC+AGG | 0.441971 | tig0006790:-32353 | Msa1344110:CDS |
| TGGGTTACTTATACGACAAA+GGG | 0.470171 | tig0006790:-32669 | Msa1344110:CDS |
| TTGTTGGTGTGTGTAAGAAT+TGG | 0.478637 | tig0006790:-33082 | Msa1344110:CDS |
| ATCAATCTCGAAATTGTGGT+TGG | 0.483573 | tig0006790:-32689 | Msa1344110:CDS |
| AGAGAACTGTGAACTTCCTT+GGG | 0.484571 | tig0006790:-33156 | Msa1344110:CDS |
| GTATAATTAACTTCAAAGGT+TGG | 0.490026 | tig0006790:+32801 | Msa1344110:intergenic |
| ATAATTAACTTCAAAGGTTG+GGG | 0.492631 | tig0006790:+32803 | Msa1344110:intergenic |
| TTGGTGTGTGTAAGAATTGG+AGG | 0.500047 | tig0006790:-33079 | Msa1344110:CDS |
| TCAATCTCGAAATTGTGGTT+GGG | 0.502080 | tig0006790:-32688 | Msa1344110:CDS |
| TCCGCTAGAAGTTGTAGAAT+AGG | 0.510738 | tig0006790:+32902 | Msa1344110:intergenic |
| GCAAGTATAATTAACTTCAA+AGG | 0.512162 | tig0006790:+32797 | Msa1344110:intergenic |
| AACTTCCTTATACTTTAGGT+TGG | 0.520558 | tig0006790:-32511 | Msa1344110:CDS |
| GTCTATCAATCTCGAAATTG+TGG | 0.522717 | tig0006790:-32693 | Msa1344110:CDS |
| TCACTGACAAGGCCAACATA+GGG | 0.530818 | tig0006790:-32593 | Msa1344110:CDS |
| GTCACTGACAAGGCCAACAT+AGG | 0.554026 | tig0006790:-32594 | Msa1344110:CDS |
| TGGTGTGTGTAAGAATTGGA+GGG | 0.563884 | tig0006790:-33078 | Msa1344110:CDS |
| TATACTTGCTTAGCTTACCA+TGG | 0.570534 | tig0006790:-32783 | Msa1344110:CDS |
| AAGGCCAACATAGGGGTACT+CGG | 0.571128 | tig0006790:-32585 | Msa1344110:CDS |
| CATTGAGCAACCCGAACAGG+TGG | 0.576830 | tig0006790:-32350 | Msa1344110:CDS |
| TAACATCTGAATACAATGAA+AGG | 0.577581 | tig0006790:-33808 | None:intergenic |
| TCCTATTCTACAACTTCTAG+CGG | 0.596656 | tig0006790:-32903 | Msa1344110:CDS |
| TGCCAAAAGCAAGCAAGCCA+TGG | 0.597025 | tig0006790:+32766 | Msa1344110:intergenic |
| AAGTTGTAGAATAGGAGAAG+CGG | 0.605776 | tig0006790:+32910 | Msa1344110:intergenic |
| CAAGCCGAGTACCCCTATGT+TGG | 0.606423 | tig0006790:+32581 | Msa1344110:intergenic |
| ATGACATCAAACACATCCCA+AGG | 0.606453 | tig0006790:+33140 | Msa1344110:intergenic |
| TTGGGTTACTTATACGACAA+AGG | 0.606762 | tig0006790:-32670 | Msa1344110:CDS |
| GACAAAGGGAAATCCGTGGA+TGG | 0.622409 | tig0006790:-32655 | Msa1344110:CDS |
| ACAAAGTCAACAACCATCCA+CGG | 0.626000 | tig0006790:+32642 | Msa1344110:intergenic |
| ATTGAGCAACCCGAACAGGT+GGG | 0.652805 | tig0006790:-32349 | Msa1344110:CDS |
| TTGAGCAACCCGAACAGGTG+GGG | 0.653141 | tig0006790:-32348 | Msa1344110:CDS |
| CACTGACAAGGCCAACATAG+GGG | 0.657764 | tig0006790:-32592 | Msa1344110:CDS |
| GATATATGTTGTCACTGACA+AGG | 0.670333 | tig0006790:-32604 | Msa1344110:CDS |
| ATACGACAAAGGGAAATCCG+TGG | 0.732189 | tig0006790:-32659 | Msa1344110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATTTTTCTTTTTGTT+GGG | - | tig0006790:32603-32622 | Msa1344110:CDS | 15.0% |
| !! | AACGAAATTTGAATAATTAA+TGG | + | tig0006790:33084-33103 | Msa1344110:intergenic | 15.0% |
| !!! | TTTTCATTTTTCTTTTTGTT+GGG | - | tig0006790:32603-32622 | Msa1344110:CDS | 15.0% |
| !! | AACGAAATTTGAATAATTAA+TGG | + | tig0006790:33084-33103 | Msa1344110:intergenic | 15.0% |
| !!! | TAGTATCTTTTATTGATTCT+TGG | - | tig0006790:32491-32510 | Msa1344110:CDS | 20.0% |
| !! | CAACAAAAAGAAAAATGAAA+AGG | + | tig0006790:32604-32623 | Msa1344110:intergenic | 20.0% |
| !!! | CTTTTCATTTTTCTTTTTGT+TGG | - | tig0006790:32602-32621 | Msa1344110:CDS | 20.0% |
| !!! | TTTCATTTTTCTTTTTGTTG+GGG | - | tig0006790:32604-32623 | Msa1344110:CDS | 20.0% |
| !! | AATTTCTATGAAGATGAAAA+TGG | - | tig0006790:32683-32702 | Msa1344110:CDS | 20.0% |
| !! | AGATATTTGTAATCTATGTT+TGG | - | tig0006790:32791-32810 | Msa1344110:CDS | 20.0% |
| !! | GATATTTGTAATCTATGTTT+GGG | - | tig0006790:32792-32811 | Msa1344110:CDS | 20.0% |
| !! | ATATTTGTAATCTATGTTTG+GGG | - | tig0006790:32793-32812 | Msa1344110:CDS | 20.0% |
| !! | TTTGTGATAACAAGATAAAA+AGG | - | tig0006790:32900-32919 | Msa1344110:CDS | 20.0% |
| !! | AATTTATTGGAGAAATTTCT+TGG | - | tig0006790:33047-33066 | Msa1344110:CDS | 20.0% |
| !! | TTTGAATAATTAATGGTTCT+TGG | + | tig0006790:33077-33096 | Msa1344110:intergenic | 20.0% |
| !! | ATCTTCTTTATTCCTATAAA+TGG | + | tig0006790:33261-33280 | Msa1344110:intergenic | 20.0% |
| !! | TATAATTAACTTCAAAGGTT+GGG | + | tig0006790:33293-33312 | Msa1344110:intergenic | 20.0% |
| !!! | AAGTATAAGGAAGTTTTATT+GGG | + | tig0006790:33576-33595 | Msa1344110:intergenic | 20.0% |
| !!! | AAAGTATAAGGAAGTTTTAT+TGG | + | tig0006790:33577-33596 | Msa1344110:intergenic | 20.0% |
| !! | ATAAAACTTCCTTATACTTT+AGG | - | tig0006790:33577-33596 | Msa1344110:intron | 20.0% |
| !!! | TTTTAGTTTGACATAATTCA+TGG | + | tig0006790:33673-33692 | Msa1344110:intergenic | 20.0% |
| !!! | TAGTATCTTTTATTGATTCT+TGG | - | tig0006790:32491-32510 | Msa1344110:CDS | 20.0% |
| !! | CAACAAAAAGAAAAATGAAA+AGG | + | tig0006790:32604-32623 | Msa1344110:intergenic | 20.0% |
| !!! | CTTTTCATTTTTCTTTTTGT+TGG | - | tig0006790:32602-32621 | Msa1344110:CDS | 20.0% |
| !!! | TTTCATTTTTCTTTTTGTTG+GGG | - | tig0006790:32604-32623 | Msa1344110:CDS | 20.0% |
| !! | AATTTCTATGAAGATGAAAA+TGG | - | tig0006790:32683-32702 | Msa1344110:CDS | 20.0% |
| !! | AGATATTTGTAATCTATGTT+TGG | - | tig0006790:32791-32810 | Msa1344110:CDS | 20.0% |
| !! | GATATTTGTAATCTATGTTT+GGG | - | tig0006790:32792-32811 | Msa1344110:CDS | 20.0% |
| !! | ATATTTGTAATCTATGTTTG+GGG | - | tig0006790:32793-32812 | Msa1344110:CDS | 20.0% |
| !! | TTTGTGATAACAAGATAAAA+AGG | - | tig0006790:32900-32919 | Msa1344110:CDS | 20.0% |
| !! | AATTTATTGGAGAAATTTCT+TGG | - | tig0006790:33047-33066 | Msa1344110:CDS | 20.0% |
| !! | TTTGAATAATTAATGGTTCT+TGG | + | tig0006790:33077-33096 | Msa1344110:intergenic | 20.0% |
| !! | ATCTTCTTTATTCCTATAAA+TGG | + | tig0006790:33261-33280 | Msa1344110:intergenic | 20.0% |
| !! | TATAATTAACTTCAAAGGTT+GGG | + | tig0006790:33293-33312 | Msa1344110:intergenic | 20.0% |
| !!! | AAGTATAAGGAAGTTTTATT+GGG | + | tig0006790:33576-33595 | Msa1344110:intergenic | 20.0% |
| !!! | AAAGTATAAGGAAGTTTTAT+TGG | + | tig0006790:33577-33596 | Msa1344110:intergenic | 20.0% |
| !! | ATAAAACTTCCTTATACTTT+AGG | - | tig0006790:33577-33596 | Msa1344110:intron | 20.0% |
| !!! | TTTTAGTTTGACATAATTCA+TGG | + | tig0006790:33673-33692 | Msa1344110:intergenic | 20.0% |
| ! | AAATTGAATAACCTACAAGA+TGG | + | tig0006790:32366-32385 | Msa1344110:intergenic | 25.0% |
| !!! | ATTTTGTCTTTTGATAGCAT+AGG | - | tig0006790:32382-32401 | Msa1344110:CDS | 25.0% |
| ! | AATAGAGTGGAATTATTGAA+GGG | + | tig0006790:32431-32450 | Msa1344110:intergenic | 25.0% |
| !!! | ACTAAAAGCATTGAAGTATT+AGG | + | tig0006790:32654-32673 | Msa1344110:intergenic | 25.0% |
| ! | ACATAGATTACAAATATCTG+TGG | + | tig0006790:32790-32809 | Msa1344110:intergenic | 25.0% |
| !! | GGGCTTTTCATAAAATTTAT+TGG | - | tig0006790:33034-33053 | Msa1344110:CDS | 25.0% |
| !! | TTTTCCTTTATTAGCATATC+TGG | - | tig0006790:33120-33139 | Msa1344110:CDS | 25.0% |
| !! | TATCCAAGTGATAAACTTTT+TGG | + | tig0006790:33146-33165 | Msa1344110:intergenic | 25.0% |
| ! | TCTCTAATCAATCCATTTAT+AGG | - | tig0006790:33246-33265 | Msa1344110:intron | 25.0% |
| ! | ATAATTAACTTCAAAGGTTG+GGG | + | tig0006790:33292-33311 | Msa1344110:intergenic | 25.0% |
| ! | GTATAATTAACTTCAAAGGT+TGG | + | tig0006790:33294-33313 | Msa1344110:intergenic | 25.0% |
| ! | GCAAGTATAATTAACTTCAA+AGG | + | tig0006790:33298-33317 | Msa1344110:intergenic | 25.0% |
| ! | TTATGTCAAACTAAAAACAC+TGG | - | tig0006790:33677-33696 | Msa1344110:intron | 25.0% |
| ! | TATGTCAAACTAAAAACACT+GGG | - | tig0006790:33678-33697 | Msa1344110:intron | 25.0% |
| ! | AAATTGAATAACCTACAAGA+TGG | + | tig0006790:32366-32385 | Msa1344110:intergenic | 25.0% |
| !!! | ATTTTGTCTTTTGATAGCAT+AGG | - | tig0006790:32382-32401 | Msa1344110:CDS | 25.0% |
| ! | AATAGAGTGGAATTATTGAA+GGG | + | tig0006790:32431-32450 | Msa1344110:intergenic | 25.0% |
| !!! | ACTAAAAGCATTGAAGTATT+AGG | + | tig0006790:32654-32673 | Msa1344110:intergenic | 25.0% |
| ! | ACATAGATTACAAATATCTG+TGG | + | tig0006790:32790-32809 | Msa1344110:intergenic | 25.0% |
| !! | GGGCTTTTCATAAAATTTAT+TGG | - | tig0006790:33034-33053 | Msa1344110:CDS | 25.0% |
| !! | TTTTCCTTTATTAGCATATC+TGG | - | tig0006790:33120-33139 | Msa1344110:CDS | 25.0% |
| !! | TATCCAAGTGATAAACTTTT+TGG | + | tig0006790:33146-33165 | Msa1344110:intergenic | 25.0% |
| ! | TCTCTAATCAATCCATTTAT+AGG | - | tig0006790:33246-33265 | Msa1344110:intron | 25.0% |
| ! | ATAATTAACTTCAAAGGTTG+GGG | + | tig0006790:33292-33311 | Msa1344110:intergenic | 25.0% |
| ! | GTATAATTAACTTCAAAGGT+TGG | + | tig0006790:33294-33313 | Msa1344110:intergenic | 25.0% |
| ! | GCAAGTATAATTAACTTCAA+AGG | + | tig0006790:33298-33317 | Msa1344110:intergenic | 25.0% |
| ! | TTATGTCAAACTAAAAACAC+TGG | - | tig0006790:33677-33696 | Msa1344110:intron | 25.0% |
| ! | TATGTCAAACTAAAAACACT+GGG | - | tig0006790:33678-33697 | Msa1344110:intron | 25.0% |
| CAATAGAGTGGAATTATTGA+AGG | + | tig0006790:32432-32451 | Msa1344110:intergenic | 30.0% | |
| ACACAAAAGATACAATAGAG+TGG | + | tig0006790:32444-32463 | Msa1344110:intergenic | 30.0% | |
| !!! | TTTTTTCTCATGTGACTGTA+GGG | - | tig0006790:32522-32541 | Msa1344110:CDS | 30.0% |
| GAAAAGGAATTGAAGACATA+GGG | + | tig0006790:32588-32607 | Msa1344110:intergenic | 30.0% | |
| TGAAAAGGAATTGAAGACAT+AGG | + | tig0006790:32589-32608 | Msa1344110:intergenic | 30.0% | |
| TAATCTATGTTTGGGGAAAA+TGG | - | tig0006790:32800-32819 | Msa1344110:CDS | 30.0% | |
| AATCTATGTTTGGGGAAAAT+GGG | - | tig0006790:32801-32820 | Msa1344110:CDS | 30.0% | |
| AGATAAAAAGGTGAAGAAGA+TGG | - | tig0006790:32912-32931 | Msa1344110:CDS | 30.0% | |
| AGTTTATCACTTGGATATGA+TGG | - | tig0006790:33149-33168 | Msa1344110:CDS | 30.0% | |
| !! | TTCTAGCGGATATTTTATCA+GGG | - | tig0006790:33203-33222 | Msa1344110:intron | 30.0% |
| AACTTCCTTATACTTTAGGT+TGG | - | tig0006790:33581-33600 | Msa1344110:intron | 30.0% | |
| GTTAACCAACCTAAAGTATA+AGG | + | tig0006790:33589-33608 | Msa1344110:intergenic | 30.0% | |
| CAATAGAGTGGAATTATTGA+AGG | + | tig0006790:32432-32451 | Msa1344110:intergenic | 30.0% | |
| ACACAAAAGATACAATAGAG+TGG | + | tig0006790:32444-32463 | Msa1344110:intergenic | 30.0% | |
| !!! | TTTTTTCTCATGTGACTGTA+GGG | - | tig0006790:32522-32541 | Msa1344110:CDS | 30.0% |
| GAAAAGGAATTGAAGACATA+GGG | + | tig0006790:32588-32607 | Msa1344110:intergenic | 30.0% | |
| TGAAAAGGAATTGAAGACAT+AGG | + | tig0006790:32589-32608 | Msa1344110:intergenic | 30.0% | |
| TAATCTATGTTTGGGGAAAA+TGG | - | tig0006790:32800-32819 | Msa1344110:CDS | 30.0% | |
| AATCTATGTTTGGGGAAAAT+GGG | - | tig0006790:32801-32820 | Msa1344110:CDS | 30.0% | |
| AGATAAAAAGGTGAAGAAGA+TGG | - | tig0006790:32912-32931 | Msa1344110:CDS | 30.0% | |
| AGTTTATCACTTGGATATGA+TGG | - | tig0006790:33149-33168 | Msa1344110:CDS | 30.0% | |
| !! | TTCTAGCGGATATTTTATCA+GGG | - | tig0006790:33203-33222 | Msa1344110:intron | 30.0% |
| AACTTCCTTATACTTTAGGT+TGG | - | tig0006790:33581-33600 | Msa1344110:intron | 30.0% | |
| GTTAACCAACCTAAAGTATA+AGG | + | tig0006790:33589-33608 | Msa1344110:intergenic | 30.0% | |
| TAAAACCTGTACCATCTTGT+AGG | - | tig0006790:32352-32371 | Msa1344110:CDS | 35.0% | |
| AATAACCTACAAGATGGTAC+AGG | + | tig0006790:32360-32379 | Msa1344110:intergenic | 35.0% | |
| !! | TTGTCTTTTGATAGCATAGG+TGG | - | tig0006790:32385-32404 | Msa1344110:CDS | 35.0% |
| !!! | GTTTTTTCTCATGTGACTGT+AGG | - | tig0006790:32521-32540 | Msa1344110:CDS | 35.0% |
| ! | TTTTTCTCATGTGACTGTAG+GGG | - | tig0006790:32523-32542 | Msa1344110:CDS | 35.0% |
| ! | TTTTCTTTTTGTTGGGGAGT+AGG | - | tig0006790:32610-32629 | Msa1344110:CDS | 35.0% |
| ! | TTTCTTTTTGTTGGGGAGTA+GGG | - | tig0006790:32611-32630 | Msa1344110:CDS | 35.0% |
| ATGATCCATGATCACGAAAA+TGG | - | tig0006790:32732-32751 | Msa1344110:CDS | 35.0% | |
| TGATCCATGATCACGAAAAT+GGG | - | tig0006790:32733-32752 | Msa1344110:CDS | 35.0% | |
| ! | TTTTCCCATTTTCGTGATCA+TGG | + | tig0006790:32740-32759 | Msa1344110:intergenic | 35.0% |
| ATCTATGTTTGGGGAAAATG+GGG | - | tig0006790:32802-32821 | Msa1344110:CDS | 35.0% | |
| !! | GTCGTCGAAATTTAGTCTTT+TGG | + | tig0006790:32980-32999 | Msa1344110:intergenic | 35.0% |
| TTGTTGGTGTGTGTAAGAAT+TGG | - | tig0006790:33010-33029 | Msa1344110:CDS | 35.0% | |
| TTGGCCAGATATGCTAATAA+AGG | + | tig0006790:33127-33146 | Msa1344110:intergenic | 35.0% | |
| TGGCCAAAAAGTTTATCACT+TGG | - | tig0006790:33140-33159 | Msa1344110:CDS | 35.0% | |
| AAGTTGTAGAATAGGAGAAG+CGG | + | tig0006790:33185-33204 | Msa1344110:intergenic | 35.0% | |
| TCCTATTCTACAACTTCTAG+CGG | - | tig0006790:33189-33208 | Msa1344110:intron | 35.0% | |
| !! | CTTCTAGCGGATATTTTATC+AGG | - | tig0006790:33202-33221 | Msa1344110:intron | 35.0% |
| TATACTTGCTTAGCTTACCA+TGG | - | tig0006790:33309-33328 | Msa1344110:intron | 35.0% | |
| !!! | ATGCTCTGAGGAATTTGTTT+TGG | - | tig0006790:33350-33369 | Msa1344110:intron | 35.0% |
| GTCTATCAATCTCGAAATTG+TGG | - | tig0006790:33399-33418 | Msa1344110:intron | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | - | tig0006790:33403-33422 | Msa1344110:intron | 35.0% | |
| TCAATCTCGAAATTGTGGTT+GGG | - | tig0006790:33404-33423 | Msa1344110:intron | 35.0% | |
| TTGGGTTACTTATACGACAA+AGG | - | tig0006790:33422-33441 | Msa1344110:intron | 35.0% | |
| TGGGTTACTTATACGACAAA+GGG | - | tig0006790:33423-33442 | Msa1344110:intron | 35.0% | |
| GATATATGTTGTCACTGACA+AGG | - | tig0006790:33488-33507 | Msa1344110:intron | 35.0% | |
| ! | CTGTGATGAACAACTTTTAG+TGG | - | tig0006790:33608-33627 | Msa1344110:intron | 35.0% |
| TAAAACCTGTACCATCTTGT+AGG | - | tig0006790:32352-32371 | Msa1344110:CDS | 35.0% | |
| AATAACCTACAAGATGGTAC+AGG | + | tig0006790:32360-32379 | Msa1344110:intergenic | 35.0% | |
| !! | TTGTCTTTTGATAGCATAGG+TGG | - | tig0006790:32385-32404 | Msa1344110:CDS | 35.0% |
| !!! | GTTTTTTCTCATGTGACTGT+AGG | - | tig0006790:32521-32540 | Msa1344110:CDS | 35.0% |
| ! | TTTTTCTCATGTGACTGTAG+GGG | - | tig0006790:32523-32542 | Msa1344110:CDS | 35.0% |
| ! | TTTTCTTTTTGTTGGGGAGT+AGG | - | tig0006790:32610-32629 | Msa1344110:CDS | 35.0% |
| ! | TTTCTTTTTGTTGGGGAGTA+GGG | - | tig0006790:32611-32630 | Msa1344110:CDS | 35.0% |
| ATGATCCATGATCACGAAAA+TGG | - | tig0006790:32732-32751 | Msa1344110:CDS | 35.0% | |
| TGATCCATGATCACGAAAAT+GGG | - | tig0006790:32733-32752 | Msa1344110:CDS | 35.0% | |
| ! | TTTTCCCATTTTCGTGATCA+TGG | + | tig0006790:32740-32759 | Msa1344110:intergenic | 35.0% |
| ATCTATGTTTGGGGAAAATG+GGG | - | tig0006790:32802-32821 | Msa1344110:CDS | 35.0% | |
| !! | GTCGTCGAAATTTAGTCTTT+TGG | + | tig0006790:32980-32999 | Msa1344110:intergenic | 35.0% |
| TTGTTGGTGTGTGTAAGAAT+TGG | - | tig0006790:33010-33029 | Msa1344110:CDS | 35.0% | |
| TTGGCCAGATATGCTAATAA+AGG | + | tig0006790:33127-33146 | Msa1344110:intergenic | 35.0% | |
| TGGCCAAAAAGTTTATCACT+TGG | - | tig0006790:33140-33159 | Msa1344110:CDS | 35.0% | |
| AAGTTGTAGAATAGGAGAAG+CGG | + | tig0006790:33185-33204 | Msa1344110:intergenic | 35.0% | |
| TCCTATTCTACAACTTCTAG+CGG | - | tig0006790:33189-33208 | Msa1344110:intron | 35.0% | |
| !! | CTTCTAGCGGATATTTTATC+AGG | - | tig0006790:33202-33221 | Msa1344110:intron | 35.0% |
| TATACTTGCTTAGCTTACCA+TGG | - | tig0006790:33309-33328 | Msa1344110:intron | 35.0% | |
| !!! | ATGCTCTGAGGAATTTGTTT+TGG | - | tig0006790:33350-33369 | Msa1344110:intron | 35.0% |
| GTCTATCAATCTCGAAATTG+TGG | - | tig0006790:33399-33418 | Msa1344110:intron | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | - | tig0006790:33403-33422 | Msa1344110:intron | 35.0% | |
| TCAATCTCGAAATTGTGGTT+GGG | - | tig0006790:33404-33423 | Msa1344110:intron | 35.0% | |
| TTGGGTTACTTATACGACAA+AGG | - | tig0006790:33422-33441 | Msa1344110:intron | 35.0% | |
| TGGGTTACTTATACGACAAA+GGG | - | tig0006790:33423-33442 | Msa1344110:intron | 35.0% | |
| GATATATGTTGTCACTGACA+AGG | - | tig0006790:33488-33507 | Msa1344110:intron | 35.0% | |
| ! | CTGTGATGAACAACTTTTAG+TGG | - | tig0006790:33608-33627 | Msa1344110:intron | 35.0% |
| TAGGGAAAGGTCAAGTAATG+AGG | + | tig0006790:32570-32589 | Msa1344110:intergenic | 40.0% | |
| GGAATTGAAGACATAGGGAA+AGG | + | tig0006790:32583-32602 | Msa1344110:intergenic | 40.0% | |
| ! | TTCTTTTTGTTGGGGAGTAG+GGG | - | tig0006790:32612-32631 | Msa1344110:CDS | 40.0% |
| AAGAGAACTGTGAACTTCCT+TGG | - | tig0006790:32935-32954 | Msa1344110:CDS | 40.0% | |
| AGAGAACTGTGAACTTCCTT+GGG | - | tig0006790:32936-32955 | Msa1344110:CDS | 40.0% | |
| ATGACATCAAACACATCCCA+AGG | + | tig0006790:32955-32974 | Msa1344110:intergenic | 40.0% | |
| GACGACTTCTTTCAGTTTGT+TGG | - | tig0006790:32994-33013 | Msa1344110:CDS | 40.0% | |
| TTGGTGTGTGTAAGAATTGG+AGG | - | tig0006790:33013-33032 | Msa1344110:CDS | 40.0% | |
| TGGTGTGTGTAAGAATTGGA+GGG | - | tig0006790:33014-33033 | Msa1344110:CDS | 40.0% | |
| TCCGCTAGAAGTTGTAGAAT+AGG | + | tig0006790:33193-33212 | Msa1344110:intergenic | 40.0% | |
| !!! | CTCTGAGGAATTTGTTTTGG+TGG | - | tig0006790:33353-33372 | Msa1344110:intron | 40.0% |
| ACAAAGTCAACAACCATCCA+CGG | + | tig0006790:33453-33472 | Msa1344110:intergenic | 40.0% | |
| TAGGGAAAGGTCAAGTAATG+AGG | + | tig0006790:32570-32589 | Msa1344110:intergenic | 40.0% | |
| GGAATTGAAGACATAGGGAA+AGG | + | tig0006790:32583-32602 | Msa1344110:intergenic | 40.0% | |
| ! | TTCTTTTTGTTGGGGAGTAG+GGG | - | tig0006790:32612-32631 | Msa1344110:CDS | 40.0% |
| AAGAGAACTGTGAACTTCCT+TGG | - | tig0006790:32935-32954 | Msa1344110:CDS | 40.0% | |
| AGAGAACTGTGAACTTCCTT+GGG | - | tig0006790:32936-32955 | Msa1344110:CDS | 40.0% | |
| ATGACATCAAACACATCCCA+AGG | + | tig0006790:32955-32974 | Msa1344110:intergenic | 40.0% | |
| GACGACTTCTTTCAGTTTGT+TGG | - | tig0006790:32994-33013 | Msa1344110:CDS | 40.0% | |
| TTGGTGTGTGTAAGAATTGG+AGG | - | tig0006790:33013-33032 | Msa1344110:CDS | 40.0% | |
| TGGTGTGTGTAAGAATTGGA+GGG | - | tig0006790:33014-33033 | Msa1344110:CDS | 40.0% | |
| TCCGCTAGAAGTTGTAGAAT+AGG | + | tig0006790:33193-33212 | Msa1344110:intergenic | 40.0% | |
| !!! | CTCTGAGGAATTTGTTTTGG+TGG | - | tig0006790:33353-33372 | Msa1344110:intron | 40.0% |
| ACAAAGTCAACAACCATCCA+CGG | + | tig0006790:33453-33472 | Msa1344110:intergenic | 40.0% | |
| ! | AGCGGATATTTTATCAGGGC+AGG | - | tig0006790:33207-33226 | Msa1344110:intron | 45.0% |
| ! | GCGGATATTTTATCAGGGCA+GGG | - | tig0006790:33208-33227 | Msa1344110:intron | 45.0% |
| !!! | TACCATGGCTTGCTTGCTTT+TGG | - | tig0006790:33324-33343 | Msa1344110:intron | 45.0% |
| ! | TGCTTTTGGCAAATGCTCTG+AGG | - | tig0006790:33338-33357 | Msa1344110:intron | 45.0% |
| ATACGACAAAGGGAAATCCG+TGG | - | tig0006790:33433-33452 | Msa1344110:intron | 45.0% | |
| TCACTGACAAGGCCAACATA+GGG | - | tig0006790:33499-33518 | Msa1344110:intron | 45.0% | |
| ! | AGCGGATATTTTATCAGGGC+AGG | - | tig0006790:33207-33226 | Msa1344110:intron | 45.0% |
| ! | GCGGATATTTTATCAGGGCA+GGG | - | tig0006790:33208-33227 | Msa1344110:intron | 45.0% |
| !!! | TACCATGGCTTGCTTGCTTT+TGG | - | tig0006790:33324-33343 | Msa1344110:intron | 45.0% |
| ! | TGCTTTTGGCAAATGCTCTG+AGG | - | tig0006790:33338-33357 | Msa1344110:intron | 45.0% |
| ATACGACAAAGGGAAATCCG+TGG | - | tig0006790:33433-33452 | Msa1344110:intron | 45.0% | |
| TCACTGACAAGGCCAACATA+GGG | - | tig0006790:33499-33518 | Msa1344110:intron | 45.0% | |
| GTGACTGTAGGGGAAATGCA+TGG | - | tig0006790:32533-32552 | Msa1344110:CDS | 50.0% | |
| TGCCAAAAGCAAGCAAGCCA+TGG | + | tig0006790:33329-33348 | Msa1344110:intergenic | 50.0% | |
| GACAAAGGGAAATCCGTGGA+TGG | - | tig0006790:33437-33456 | Msa1344110:intron | 50.0% | |
| GTCACTGACAAGGCCAACAT+AGG | - | tig0006790:33498-33517 | Msa1344110:intron | 50.0% | |
| CACTGACAAGGCCAACATAG+GGG | - | tig0006790:33500-33519 | Msa1344110:intron | 50.0% | |
| !! | AAGGCCAACATAGGGGTACT+CGG | - | tig0006790:33507-33526 | Msa1344110:intron | 50.0% |
| ATGCATTGAGCAACCCGAAC+AGG | - | tig0006790:33739-33758 | Msa1344110:intron | 50.0% | |
| ATTGAGCAACCCGAACAGGT+GGG | - | tig0006790:33743-33762 | Msa1344110:intron | 50.0% | |
| TCTCATATCCCCACCTGTTC+GGG | + | tig0006790:33755-33774 | Msa1344110:intergenic | 50.0% | |
| CTCTCATATCCCCACCTGTT+CGG | + | tig0006790:33756-33775 | Msa1344110:intergenic | 50.0% | |
| GTGACTGTAGGGGAAATGCA+TGG | - | tig0006790:32533-32552 | Msa1344110:CDS | 50.0% | |
| TGCCAAAAGCAAGCAAGCCA+TGG | + | tig0006790:33329-33348 | Msa1344110:intergenic | 50.0% | |
| GACAAAGGGAAATCCGTGGA+TGG | - | tig0006790:33437-33456 | Msa1344110:intron | 50.0% | |
| GTCACTGACAAGGCCAACAT+AGG | - | tig0006790:33498-33517 | Msa1344110:intron | 50.0% | |
| CACTGACAAGGCCAACATAG+GGG | - | tig0006790:33500-33519 | Msa1344110:intron | 50.0% | |
| !! | AAGGCCAACATAGGGGTACT+CGG | - | tig0006790:33507-33526 | Msa1344110:intron | 50.0% |
| ATGCATTGAGCAACCCGAAC+AGG | - | tig0006790:33739-33758 | Msa1344110:intron | 50.0% | |
| ATTGAGCAACCCGAACAGGT+GGG | - | tig0006790:33743-33762 | Msa1344110:intron | 50.0% | |
| TCTCATATCCCCACCTGTTC+GGG | + | tig0006790:33755-33774 | Msa1344110:intergenic | 50.0% | |
| CTCTCATATCCCCACCTGTT+CGG | + | tig0006790:33756-33775 | Msa1344110:intergenic | 50.0% | |
| CAAGCCGAGTACCCCTATGT+TGG | + | tig0006790:33514-33533 | Msa1344110:intergenic | 55.0% | |
| CATTGAGCAACCCGAACAGG+TGG | - | tig0006790:33742-33761 | Msa1344110:intron | 55.0% | |
| TTGAGCAACCCGAACAGGTG+GGG | - | tig0006790:33744-33763 | Msa1344110:intron | 55.0% | |
| CAAGCCGAGTACCCCTATGT+TGG | + | tig0006790:33514-33533 | Msa1344110:intergenic | 55.0% | |
| CATTGAGCAACCCGAACAGG+TGG | - | tig0006790:33742-33761 | Msa1344110:intron | 55.0% | |
| TTGAGCAACCCGAACAGGTG+GGG | - | tig0006790:33744-33763 | Msa1344110:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006790 | gene | 32299 | 33815 | 32299 | ID=Msa1344110;Name=Msa1344110 |
| tig0006790 | mRNA | 32299 | 33815 | 32299 | ID=Msa1344110-mRNA-1;Parent=Msa1344110;Name=Msa1344110-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.5|1|1|2|0|302 |
| tig0006790 | exon | 33809 | 33815 | 33809 | ID=Msa1344110-mRNA-1:exon:4388;Parent=Msa1344110-mRNA-1 |
| tig0006790 | exon | 32299 | 33200 | 32299 | ID=Msa1344110-mRNA-1:exon:4387;Parent=Msa1344110-mRNA-1 |
| tig0006790 | CDS | 33809 | 33815 | 33809 | ID=Msa1344110-mRNA-1:cds;Parent=Msa1344110-mRNA-1 |
| tig0006790 | CDS | 32299 | 33200 | 32299 | ID=Msa1344110-mRNA-1:cds;Parent=Msa1344110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
