AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 23 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTGTTGGGACAGATTTA+GGG 0.263632 2_4:+18489076 Msa0319170:intron
ATCAGAAATATCCATGAAAT+TGG 0.273549 2_4:-18485232 None:intergenic
GTAATAGTACTTACATTCTT+TGG 0.293442 2_4:-18485352 None:intergenic
ATGGATTGAAGATGGAGAAT+TGG 0.326377 2_4:+18488785 Msa0319170:CDS
AAGTAGAAATTGAAGAAATT+AGG 0.332969 2_4:+18488814 Msa0319170:CDS
AGTCTTTCGGTGCCCAGTTT+TGG 0.337627 2_4:-18486083 None:intergenic
TGGATTGAAGATGGAGAATT+GGG 0.341734 2_4:+18488786 Msa0319170:CDS
GTATTATGTAGGACCAAAAC+TGG 0.344502 2_4:+18486070 Msa0319170:intron
ATATTGAAGATTAGGGTTCA+TGG 0.372559 2_4:+18488766 Msa0319170:intron
TTCTTGCGGAACCAATTTCA+TGG 0.376875 2_4:+18485221 Msa0319170:CDS
CAGTTTCAGCCTAGAATTAG+AGG 0.378850 2_4:+18488869 Msa0319170:CDS
GGGAACCCACCTCTAATTCT+AGG 0.385313 2_4:-18488878 None:intergenic
TAGGGTTCATGGATTGAAGA+TGG 0.455797 2_4:+18488777 Msa0319170:intron
AGTACTTACATTCTTTGGTC+GGG 0.485847 2_4:-18485347 None:intergenic
ACGATGATACTGACTTCATC+AGG 0.492493 2_4:+18485323 Msa0319170:CDS
ATTACTTTCATCACCACCAT+TGG 0.501988 2_4:-18485284 None:intergenic
TAGTACTTACATTCTTTGGT+CGG 0.522296 2_4:-18485348 None:intergenic
AATTGAAGAAATTAGGAGCA+AGG 0.523754 2_4:+18488821 Msa0319170:CDS
GGTTGTTGGGACAGATTTAG+GGG 0.568279 2_4:+18489077 Msa0319170:intron
AACAATGACGATAAAACCAA+TGG 0.579546 2_4:+18485268 Msa0319170:CDS
AATGACGATAAAACCAATGG+TGG 0.632117 2_4:+18485271 Msa0319170:CDS
TATTATGTAGGACCAAAACT+GGG 0.674435 2_4:+18486071 Msa0319170:intron
AGAAGACAAAGTCATTCTTG+CGG 0.707667 2_4:+18485207 Msa0319170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATTCTATTCATA+TGG + chr2_4:18485757-18485776 Msa0319170:intron 10.0%
!! TATTAAATTAAATTGAAACA+TGG + chr2_4:18486287-18486306 Msa0319170:intron 10.0%
!!! TCATATAATTTGTAATATTA+GGG - chr2_4:18486731-18486750 None:intergenic 10.0%
!!! ATCATATAATTTGTAATATT+AGG - chr2_4:18486732-18486751 None:intergenic 10.0%
!! TAATACATTTATAACCATAT+AGG + chr2_4:18485464-18485483 Msa0319170:intron 15.0%
!! TGTATAAGAAAATAAAATAG+AGG - chr2_4:18486008-18486027 None:intergenic 15.0%
!!! TTTTATTGTATTTTTGCATT+AGG - chr2_4:18486198-18486217 None:intergenic 15.0%
!! AAGATGAAGATTATATATAT+AGG - chr2_4:18486505-18486524 None:intergenic 15.0%
!!! ATTTAGAATTAGAAAAGATA+AGG + chr2_4:18487423-18487442 Msa0319170:intron 15.0%
!! ATTAAGTTATAGTATTACAA+AGG - chr2_4:18487516-18487535 None:intergenic 15.0%
!!! AACATAAATGGTTTAATTTA+CGG + chr2_4:18488131-18488150 Msa0319170:intron 15.0%
!!! ATGATTGATATTTTAATTTG+AGG - chr2_4:18488675-18488694 None:intergenic 15.0%
!! AATAAGAATATTGAAGATTA+GGG + chr2_4:18488759-18488778 Msa0319170:intron 15.0%
!! TGCATTATATTATGATAATT+AGG + chr2_4:18488916-18488935 Msa0319170:intron 15.0%
!!! ATATCATACATTTTTAATCA+AGG - chr2_4:18489030-18489049 None:intergenic 15.0%
!! TTCATCAAATTGTATTATGT+AGG + chr2_4:18486059-18486078 Msa0319170:intron 20.0%
!! AAAAATGGAAAAACTTATCA+AGG + chr2_4:18486140-18486159 Msa0319170:CDS 20.0%
!! ACAGAAAATATAAAACAGTA+CGG - chr2_4:18486381-18486400 None:intergenic 20.0%
!!! GTTTTATATTTTCTGTTTCA+TGG + chr2_4:18486385-18486404 Msa0319170:intron 20.0%
!! CTAAGTTAAAAAAGAATACA+AGG - chr2_4:18486926-18486945 None:intergenic 20.0%
!! TAGACAAAATTATTACATTC+CGG + chr2_4:18487095-18487114 Msa0319170:intron 20.0%
!!! AACTAATTTTTAACTAACAC+CGG - chr2_4:18487117-18487136 None:intergenic 20.0%
!! AACACTAAATCAAGAAAAAA+TGG - chr2_4:18487162-18487181 None:intergenic 20.0%
!! ATGAGAATAACATCAAAATA+TGG - chr2_4:18487201-18487220 None:intergenic 20.0%
!!! AACTTTGAAGAAAAATAACA+TGG + chr2_4:18487569-18487588 Msa0319170:intron 20.0%
!! TTATAAATGTAATTTGGTTG+TGG + chr2_4:18487679-18487698 Msa0319170:intron 20.0%
!!! TTGTAAATTTTTAGCAGAAA+TGG - chr2_4:18487965-18487984 None:intergenic 20.0%
!! TCTCTTAAACAAAACATAAA+TGG + chr2_4:18488119-18488138 Msa0319170:intron 20.0%
!! TTAGATGTTAAACAATAAGA+GGG - chr2_4:18488215-18488234 None:intergenic 20.0%
!! ATTAGATGTTAAACAATAAG+AGG - chr2_4:18488216-18488235 None:intergenic 20.0%
!!! ACAATAACACCTTTTAAAAA+AGG - chr2_4:18488362-18488381 None:intergenic 20.0%
!! ACTAAAAATTAAGTGCTAAT+TGG - chr2_4:18488405-18488424 None:intergenic 20.0%
!! TAAGGAATAAAATTAGACTT+TGG + chr2_4:18488457-18488476 Msa0319170:intron 20.0%
!! AAGGAATAAAATTAGACTTT+GGG + chr2_4:18488458-18488477 Msa0319170:intron 20.0%
!! TGATTAACATTGTAACTTAA+GGG + chr2_4:18488488-18488507 Msa0319170:intron 20.0%
!!! AATCATTTTGACTAAAATGT+TGG - chr2_4:18488561-18488580 None:intergenic 20.0%
!! GAATAAGAATATTGAAGATT+AGG + chr2_4:18488758-18488777 Msa0319170:intron 20.0%
!! AAGTAGAAATTGAAGAAATT+AGG + chr2_4:18488814-18488833 Msa0319170:CDS 20.0%
!! TTATCATAATATAATGCATG+AGG - chr2_4:18488914-18488933 None:intergenic 20.0%
! ATCAGAAATATCCATGAAAT+TGG - chr2_4:18485235-18485254 None:intergenic 25.0%
! GTAATAGTACTTACATTCTT+TGG - chr2_4:18485355-18485374 None:intergenic 25.0%
! TTAGAATCTAAACTCCTATA+TGG - chr2_4:18485481-18485500 None:intergenic 25.0%
! TCATTTCTATGATGTCAATA+AGG - chr2_4:18485665-18485684 None:intergenic 25.0%
! TCAATTGACTAAATCTTATG+CGG + chr2_4:18485949-18485968 Msa0319170:intron 25.0%
! ACTCAAGTATCTTACAAAAA+TGG + chr2_4:18486125-18486144 Msa0319170:CDS 25.0%
!!! TATTGTATTTTTGCATTAGG+TGG - chr2_4:18486195-18486214 None:intergenic 25.0%
!! TGTTTCTACATTAACACATA+GGG - chr2_4:18486263-18486282 None:intergenic 25.0%
!! ATGTTTCTACATTAACACAT+AGG - chr2_4:18486264-18486283 None:intergenic 25.0%
! ATAATCTTCATCTTAGAAGT+TGG + chr2_4:18486511-18486530 Msa0319170:intron 25.0%
! TACCTTGTCTCATATAAAAT+AGG - chr2_4:18486581-18486600 None:intergenic 25.0%
! AATATGAAAATAGTTGCTTG+TGG + chr2_4:18486878-18486897 Msa0319170:intron 25.0%
! TTCAGGTGAAATATATGTAT+AGG + chr2_4:18487269-18487288 Msa0319170:intron 25.0%
! ACTCCAACATATTTAGATAA+AGG + chr2_4:18487301-18487320 Msa0319170:intron 25.0%
! CTTCCTTTATCTAAATATGT+TGG - chr2_4:18487307-18487326 None:intergenic 25.0%
!! AGATGAAATTTTCCATGTTT+GGG - chr2_4:18487481-18487500 None:intergenic 25.0%
!! AAGATGAAATTTTCCATGTT+TGG - chr2_4:18487482-18487501 None:intergenic 25.0%
! AGTTATAGTATTACAAAGGA+AGG - chr2_4:18487512-18487531 None:intergenic 25.0%
! TCATTCGTATTAACCAATAT+CGG + chr2_4:18487802-18487821 Msa0319170:intron 25.0%
!!! TAAATTTTTAGCAGAAATGG+AGG - chr2_4:18487962-18487981 None:intergenic 25.0%
!!! GTAAAATAACCATGTTTTTG+TGG - chr2_4:18488015-18488034 None:intergenic 25.0%
! TTGTTTAACATCTAATTGCA+TGG + chr2_4:18488220-18488239 Msa0319170:intron 25.0%
! ATCATAAAGTGAATATAGCA+TGG + chr2_4:18488312-18488331 Msa0319170:intron 25.0%
!! TAATTGGTATTCTTGATTTG+GGG - chr2_4:18488389-18488408 None:intergenic 25.0%
! CTAATTGGTATTCTTGATTT+GGG - chr2_4:18488390-18488409 None:intergenic 25.0%
! GTGATTAACATTGTAACTTA+AGG + chr2_4:18488487-18488506 Msa0319170:intron 25.0%
! AATTAGGATGTGTTAGTATA+TGG + chr2_4:18488932-18488951 Msa0319170:intron 25.0%
AACAATGACGATAAAACCAA+TGG + chr2_4:18485268-18485287 Msa0319170:CDS 30.0%
TAGTACTTACATTCTTTGGT+CGG - chr2_4:18485351-18485370 None:intergenic 30.0%
! CATTTGTTAATCCATTCAGA+TGG - chr2_4:18485551-18485570 None:intergenic 30.0%
TATTATGTAGGACCAAAACT+GGG + chr2_4:18486071-18486090 Msa0319170:intron 30.0%
!!! GACAACTTTTTGAAGTCTTT+CGG - chr2_4:18486099-18486118 None:intergenic 30.0%
! GGATATCCTATTTCTTGTAT+TGG + chr2_4:18486308-18486327 Msa0319170:intron 30.0%
AGTCAACCAATACAAGAAAT+AGG - chr2_4:18486317-18486336 None:intergenic 30.0%
AATCAAACATCAACTCTAAG+AGG + chr2_4:18486412-18486431 Msa0319170:intron 30.0%
! GGTACTATCTTGTATTCTTT+TGG - chr2_4:18486557-18486576 None:intergenic 30.0%
CTTGTCTCATATAAAATAGG+TGG - chr2_4:18486578-18486597 None:intergenic 30.0%
! CACCTATTTTATATGAGACA+AGG + chr2_4:18486576-18486595 Msa0319170:intron 30.0%
GAAGTAATAGAAAAAACTCG+AGG + chr2_4:18486619-18486638 Msa0319170:intron 30.0%
! TGATTGTATGCTTGATTTTG+TGG + chr2_4:18486748-18486767 Msa0319170:intron 30.0%
ATTCTTAGAGCAAGATGATT+TGG + chr2_4:18486819-18486838 Msa0319170:intron 30.0%
TTAGATACAACTGCTATTGT+GGG + chr2_4:18487026-18487045 Msa0319170:intron 30.0%
CAATTAGACATCTTACTCAT+GGG + chr2_4:18487233-18487252 Msa0319170:intron 30.0%
!! TGGGTTGAGTTTTATATTTC+AGG + chr2_4:18487252-18487271 Msa0319170:intron 30.0%
!! TCACCCTTGTTATTATTAGA+AGG + chr2_4:18487331-18487350 Msa0319170:intron 30.0%
!! CACCCTTGTTATTATTAGAA+GGG + chr2_4:18487332-18487351 Msa0319170:intron 30.0%
CTCCCTTCTAATAATAACAA+GGG - chr2_4:18487337-18487356 None:intergenic 30.0%
AAGCCACTATGAAATTTGAT+AGG + chr2_4:18487362-18487381 Msa0319170:intron 30.0%
AGCCACTATGAAATTTGATA+GGG + chr2_4:18487363-18487382 Msa0319170:intron 30.0%
ATCCCTATCAAATTTCATAG+TGG - chr2_4:18487368-18487387 None:intergenic 30.0%
TTTACCTACAAAGTCTTTGA+TGG + chr2_4:18487400-18487419 Msa0319170:intron 30.0%
AAATCCATCAAAGACTTTGT+AGG - chr2_4:18487407-18487426 None:intergenic 30.0%
! GATGAAATTTTCCATGTTTG+GGG - chr2_4:18487480-18487499 None:intergenic 30.0%
TTATATGATATTGCTTCACG+AGG + chr2_4:18487746-18487765 Msa0319170:intron 30.0%
! GGAAATCATGAGAATTTTAC+AGG - chr2_4:18487994-18488013 None:intergenic 30.0%
TCATGATTTCCACAAAAACA+TGG + chr2_4:18488003-18488022 Msa0319170:intron 30.0%
CAAAGACTAAAGTTTGAATG+GGG - chr2_4:18488080-18488099 None:intergenic 30.0%
CCAAAGACTAAAGTTTGAAT+GGG - chr2_4:18488081-18488100 None:intergenic 30.0%
ACCAAAGACTAAAGTTTGAA+TGG - chr2_4:18488082-18488101 None:intergenic 30.0%
ACTTCTAAGTCATCTACATT+TGG + chr2_4:18488170-18488189 Msa0319170:intron 30.0%
!!! AACCATGGTCCTTTTTTAAA+AGG + chr2_4:18488350-18488369 Msa0319170:intron 30.0%
GCTAATTGGTATTCTTGATT+TGG - chr2_4:18488391-18488410 None:intergenic 30.0%
AGTGTATTAAGGGTTATTAG+TGG + chr2_4:18488432-18488451 Msa0319170:intron 30.0%
TGGACTTTCTCATTTACATA+GGG - chr2_4:18488541-18488560 None:intergenic 30.0%
TTGGACTTTCTCATTTACAT+AGG - chr2_4:18488542-18488561 None:intergenic 30.0%
TATGTAAACCATAGAAAGAG+AGG + chr2_4:18488714-18488733 Msa0319170:intron 30.0%
ATGTAAACCATAGAAAGAGA+GGG + chr2_4:18488715-18488734 Msa0319170:intron 30.0%
ATATTGAAGATTAGGGTTCA+TGG + chr2_4:18488766-18488785 Msa0319170:intron 30.0%
AATTGAAGAAATTAGGAGCA+AGG + chr2_4:18488821-18488840 Msa0319170:CDS 30.0%
ATATAATGCATGAGGAATGA+GGG - chr2_4:18488906-18488925 None:intergenic 30.0%
AATATAATGCATGAGGAATG+AGG - chr2_4:18488907-18488926 None:intergenic 30.0%
ATAACTTAGAACTACATGCA+TGG - chr2_4:18488975-18488994 None:intergenic 30.0%
GAATTGTTTCATATGTTTGC+TGG + chr2_4:18489056-18489075 Msa0319170:intron 30.0%
AGAAGACAAAGTCATTCTTG+CGG + chr2_4:18485207-18485226 Msa0319170:CDS 35.0%
AATGACGATAAAACCAATGG+TGG + chr2_4:18485271-18485290 Msa0319170:CDS 35.0%
ATTACTTTCATCACCACCAT+TGG - chr2_4:18485287-18485306 None:intergenic 35.0%
AGTACTTACATTCTTTGGTC+GGG - chr2_4:18485350-18485369 None:intergenic 35.0%
!!! CATTCAGATGGAAGTGTTTT+TGG - chr2_4:18485539-18485558 None:intergenic 35.0%
CAAAAACACTTCCATCTGAA+TGG + chr2_4:18485537-18485556 Msa0319170:intron 35.0%
! AGACATATGTGAAGCATCTA+AGG - chr2_4:18485893-18485912 None:intergenic 35.0%
TTCACATATGTCTTGTGGTA+GGG + chr2_4:18485900-18485919 Msa0319170:intron 35.0%
GTATTATGTAGGACCAAAAC+TGG + chr2_4:18486070-18486089 Msa0319170:intron 35.0%
CTACATTAACACATAGGGTA+GGG - chr2_4:18486258-18486277 None:intergenic 35.0%
TCTACATTAACACATAGGGT+AGG - chr2_4:18486259-18486278 None:intergenic 35.0%
! GTCTTTACATCCCTATCTTT+TGG + chr2_4:18486338-18486357 Msa0319170:intron 35.0%
!! TAAGAGGCTTGGATTAGTAT+TGG + chr2_4:18486428-18486447 Msa0319170:intron 35.0%
!! AAGAGGCTTGGATTAGTATT+GGG + chr2_4:18486429-18486448 Msa0319170:intron 35.0%
! AGGCTTTATAAGCTCTACTT+AGG - chr2_4:18486485-18486504 None:intergenic 35.0%
!! CATCTTAGAAGTTGGTTTGT+TGG + chr2_4:18486519-18486538 Msa0319170:intron 35.0%
TTGTCTCATTCGTAAGGTTT+GGG - chr2_4:18486707-18486726 None:intergenic 35.0%
TTTGTCTCATTCGTAAGGTT+TGG - chr2_4:18486708-18486727 None:intergenic 35.0%
AGTAGAAATCGAGACATGTA+TGG + chr2_4:18486775-18486794 Msa0319170:intron 35.0%
! TGATTTGGAGATAAGCTGAA+AGG + chr2_4:18486834-18486853 Msa0319170:intron 35.0%
GAGATAAGCTGAAAGGAATA+AGG + chr2_4:18486841-18486860 Msa0319170:intron 35.0%
CTTAGATACAACTGCTATTG+TGG + chr2_4:18487025-18487044 Msa0319170:intron 35.0%
CCATGAGTAAGATGTCTAAT+TGG - chr2_4:18487235-18487254 None:intergenic 35.0%
CCAATTAGACATCTTACTCA+TGG + chr2_4:18487232-18487251 Msa0319170:intron 35.0%
CCTCCCTTCTAATAATAACA+AGG - chr2_4:18487338-18487357 None:intergenic 35.0%
!! CCTTGTTATTATTAGAAGGG+AGG + chr2_4:18487335-18487354 Msa0319170:intron 35.0%
! CCCATTCAAACTTTAGTCTT+TGG + chr2_4:18488078-18488097 Msa0319170:intron 35.0%
GTGTATTAGACTACAGGAAA+GGG - chr2_4:18488263-18488282 None:intergenic 35.0%
TGTGTATTAGACTACAGGAA+AGG - chr2_4:18488264-18488283 None:intergenic 35.0%
TTCCTGTAGTCTAATACACA+TGG + chr2_4:18488264-18488283 Msa0319170:intron 35.0%
TACCATGTGTATTAGACTAC+AGG - chr2_4:18488269-18488288 None:intergenic 35.0%
!! CACCTTTTAAAAAAGGACCA+TGG - chr2_4:18488355-18488374 None:intergenic 35.0%
TAGTGTCTCTGAGTGTATTA+AGG + chr2_4:18488421-18488440 Msa0319170:intron 35.0%
AGTGTCTCTGAGTGTATTAA+GGG + chr2_4:18488422-18488441 Msa0319170:intron 35.0%
TAAGGGTTATTAGTGGCTTA+AGG + chr2_4:18488439-18488458 Msa0319170:intron 35.0%
ACTTTCTCATTTACATAGGG+AGG - chr2_4:18488538-18488557 None:intergenic 35.0%
AAAATGTGTCTCTTGTCTTG+TGG - chr2_4:18488623-18488642 None:intergenic 35.0%
!! GTTGCATGTAGTATTGGTTA+AGG - chr2_4:18488653-18488672 None:intergenic 35.0%
! TTTGAGGTTGCATGTAGTAT+TGG - chr2_4:18488659-18488678 None:intergenic 35.0%
AAATTCACCCTCTCTTTCTA+TGG - chr2_4:18488725-18488744 None:intergenic 35.0%
! ATGGATTGAAGATGGAGAAT+TGG + chr2_4:18488785-18488804 Msa0319170:CDS 35.0%
TGGATTGAAGATGGAGAATT+GGG + chr2_4:18488786-18488805 Msa0319170:CDS 35.0%
! TTCATATGTTTGCTGGTTGT+TGG + chr2_4:18489063-18489082 Msa0319170:intron 35.0%
! TCATATGTTTGCTGGTTGTT+GGG + chr2_4:18489064-18489083 Msa0319170:intron 35.0%
TTCTTGCGGAACCAATTTCA+TGG + chr2_4:18485221-18485240 Msa0319170:CDS 40.0%
!! ACGATGATACTGACTTCATC+AGG + chr2_4:18485323-18485342 Msa0319170:CDS 40.0%
GTTCACGTACTACATCTTCA+AGG + chr2_4:18485501-18485520 Msa0319170:intron 40.0%
!!! GGAAGTGTTTTTGGACATCT+AGG - chr2_4:18485530-18485549 None:intergenic 40.0%
ACCTGACAGTAGGATTGATA+AGG + chr2_4:18485592-18485611 Msa0319170:intron 40.0%
ACCTTATCAATCCTACTGTC+AGG - chr2_4:18485596-18485615 None:intergenic 40.0%
GATGCTTCACATATGTCTTG+TGG + chr2_4:18485895-18485914 Msa0319170:intron 40.0%
CTTCACATATGTCTTGTGGT+AGG + chr2_4:18485899-18485918 Msa0319170:intron 40.0%
!! ACATCCCTATCTTTTGGAAG+TGG + chr2_4:18486344-18486363 Msa0319170:intron 40.0%
!! CATCCCTATCTTTTGGAAGT+GGG + chr2_4:18486345-18486364 Msa0319170:intron 40.0%
GAACCCACTTCCAAAAGATA+GGG - chr2_4:18486351-18486370 None:intergenic 40.0%
AGAACCCACTTCCAAAAGAT+AGG - chr2_4:18486352-18486371 None:intergenic 40.0%
! AACATCAACTCTAAGAGGCT+TGG + chr2_4:18486417-18486436 Msa0319170:intron 40.0%
TCACCTTACAAGCTACTTGT+AGG + chr2_4:18486669-18486688 Msa0319170:intron 40.0%
CACCTTACAAGCTACTTGTA+GGG + chr2_4:18486670-18486689 Msa0319170:intron 40.0%
! AACCCTACAAGTAGCTTGTA+AGG - chr2_4:18486675-18486694 None:intergenic 40.0%
TAGGGTTTGTCTCATTCGTA+AGG - chr2_4:18486713-18486732 None:intergenic 40.0%
GTCCATGTCTGCACAATAAA+GGG + chr2_4:18487445-18487464 Msa0319170:intron 40.0%
TCCATGTCTGCACAATAAAG+GGG + chr2_4:18487446-18487465 Msa0319170:intron 40.0%
!! CGAGATATGTGGCTTTGATT+AGG + chr2_4:18487771-18487790 Msa0319170:intron 40.0%
TTAGCAGAAATGGAGGATGT+AGG - chr2_4:18487955-18487974 None:intergenic 40.0%
! TAATTGCATGGTGATGACGT+TGG + chr2_4:18488232-18488251 Msa0319170:intron 40.0%
TTACATAGGGAGGTTTCATG+TGG - chr2_4:18488528-18488547 None:intergenic 40.0%
! TAGGGTTCATGGATTGAAGA+TGG + chr2_4:18488777-18488796 Msa0319170:intron 40.0%
CAGTTTCAGCCTAGAATTAG+AGG + chr2_4:18488869-18488888 Msa0319170:CDS 40.0%
TTTCAGCCTAGAATTAGAGG+TGG + chr2_4:18488872-18488891 Msa0319170:intron 40.0%
TTCAGCCTAGAATTAGAGGT+GGG + chr2_4:18488873-18488892 Msa0319170:intron 40.0%
AAAAAACTCGAGGCTCACGT+TGG + chr2_4:18486629-18486648 Msa0319170:intron 45.0%
GGTCCATGTCTGCACAATAA+AGG + chr2_4:18487444-18487463 Msa0319170:intron 45.0%
TCCCCTTTATTGTGCAGACA+TGG - chr2_4:18487450-18487469 None:intergenic 45.0%
TATAGCATGGTAGCCTGTTG+AGG + chr2_4:18488325-18488344 Msa0319170:intron 45.0%
TAGCCTGTTGAGGATAACCA+TGG + chr2_4:18488335-18488354 Msa0319170:intron 45.0%
TGAATCGTACAGGAGGAAGA+AGG - chr2_4:18488596-18488615 None:intergenic 45.0%
TTGTGGTTGCTGAATCGTAC+AGG - chr2_4:18488606-18488625 None:intergenic 45.0%
AATGCATGAGGAATGAGGGA+GGG - chr2_4:18488902-18488921 None:intergenic 45.0%
TAATGCATGAGGAATGAGGG+AGG - chr2_4:18488903-18488922 None:intergenic 45.0%
!!! TTATAATTATTTTAATTGAT+CGG - chr2_4:18487665-18487684 None:intergenic 5.0%
!! AAATAATTATAAATGTAATT+TGG + chr2_4:18487673-18487692 Msa0319170:intron 5.0%
TCAATCCTACTGTCAGGTCG+CGG - chr2_4:18485590-18485609 None:intergenic 50.0%
CTTGTGGTAGGGTGTGATCT+AGG + chr2_4:18485911-18485930 Msa0319170:intron 50.0%
!!! AGTCTTTCGGTGCCCAGTTT+TGG - chr2_4:18486086-18486105 None:intergenic 50.0%
!! GGCTCACGTTGGTAATGTCT+AGG + chr2_4:18486640-18486659 Msa0319170:intron 50.0%
GGGATGAAACTCCCCAAACA+TGG + chr2_4:18487466-18487485 Msa0319170:intron 50.0%
TTCACGAGGAGCGAGATATG+TGG + chr2_4:18487760-18487779 Msa0319170:intron 50.0%
GGACCATGGTTATCCTCAAC+AGG - chr2_4:18488341-18488360 None:intergenic 50.0%
TGGTTGCTGAATCGTACAGG+AGG - chr2_4:18488603-18488622 None:intergenic 50.0%
GGGAACCCACCTCTAATTCT+AGG - chr2_4:18488881-18488900 None:intergenic 50.0%
ATGCATGAGGAATGAGGGAG+GGG - chr2_4:18488901-18488920 None:intergenic 50.0%
AATGACCGCGACCTGACAGT+AGG + chr2_4:18485582-18485601 Msa0319170:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 18485205 18489096 18485205 ID=Msa0319170;Name=Msa0319170
chr2_4 mRNA 18485205 18489096 18485205 ID=Msa0319170-mRNA-1;Parent=Msa0319170;Name=Msa0319170-mRNA-1;_AED=0.75;_eAED=0.75;_QI=0|0|0|0.25|0.66|0.5|4|0|117
chr2_4 exon 18485205 18485360 18485205 ID=Msa0319170-mRNA-1:exon:6924;Parent=Msa0319170-mRNA-1
chr2_4 exon 18486081 18486161 18486081 ID=Msa0319170-mRNA-1:exon:6925;Parent=Msa0319170-mRNA-1
chr2_4 exon 18488780 18488890 18488780 ID=Msa0319170-mRNA-1:exon:6926;Parent=Msa0319170-mRNA-1
chr2_4 exon 18489091 18489096 18489091 ID=Msa0319170-mRNA-1:exon:6927;Parent=Msa0319170-mRNA-1
chr2_4 CDS 18485205 18485360 18485205 ID=Msa0319170-mRNA-1:cds;Parent=Msa0319170-mRNA-1
chr2_4 CDS 18486081 18486161 18486081 ID=Msa0319170-mRNA-1:cds;Parent=Msa0319170-mRNA-1
chr2_4 CDS 18488780 18488890 18488780 ID=Msa0319170-mRNA-1:cds;Parent=Msa0319170-mRNA-1
chr2_4 CDS 18489091 18489096 18489091 ID=Msa0319170-mRNA-1:cds;Parent=Msa0319170-mRNA-1
Gene Sequence

>Msa0319170

CAAGAAGACAAAGTCATTCTTGCGGAACCAATTTCATGGATATTTCTGATTTATTATAATGACAACAATGACGATAAAACCAATGGTGGTGATGAAAGTAATGATGATCTTAAGAATAACGATGATACTGACTTCATCAGGACCCGACCAAAGAATGACCAAAACTGGGCACCGAAAGACTTCAAAAAGTTGTCAGCAAAACTCAAGTATCTTACAAAAATGGAAAAACTTATCAAGGGTTCATGGATTGAAGATGGAGAATTGGGAATCAAAGTAGAAATTGAAGAAATTAGGAGCAAGGAAAGAATGATTGAAGCTTTAATCGTCAGTTTCAGCCTAGAATTAGAGATTTAG

Protein sequence

>Msa0319170

QEDKVILAEPISWIFLIYYNDNNDDKTNGGDESNDDLKNNDDTDFIRTRPKNDQNWAPKDFKKLSAKLKYLTKMEKLIKGSWIEDGELGIKVEIEEIRSKERMIEALIVSFSLELEI*