Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345260 | A0A1S2XD50 | 60.784 | 51 | 20 | 0 | 11 | 61 | 126 | 176 | 5.82e-11 | 64.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0638070 | Msa1345260 | 0.801232 | 9.923889e-49 | -8.615850e-47 |
| Msa1233890 | Msa1345260 | 0.801167 | 1.023075e-48 | -8.615850e-47 |
| Msa0259370 | Msa1345260 | 0.813063 | 3.093607e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345260 | MtrunA17_Chr2g0287321 | 58.491 | 53 | 22 | 0 | 9 | 61 | 125 | 177 | 1.38e-11 | 56.2 |
| Msa1345260 | MtrunA17_Chr2g0287401 | 52.830 | 53 | 25 | 0 | 11 | 63 | 116 | 168 | 4.91e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 12 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGTTAATATGCAAATTC+TGG | 0.240555 | tig0007112:-99324 | Msa1345260:CDS |
| ATCATCTTTGGGTGTTTGTT+AGG | 0.284096 | tig0007112:-99373 | Msa1345260:CDS |
| TAGCGCAGTTGGATCATCTT+TGG | 0.291296 | tig0007112:-99385 | Msa1345260:CDS |
| AGCGCAGTTGGATCATCTTT+GGG | 0.403947 | tig0007112:-99384 | Msa1345260:CDS |
| GGCGGAGGAGGTAGCGCAGT+TGG | 0.445085 | tig0007112:-99396 | Msa1345260:CDS |
| AATTCAGGAGGAGGCGGAGG+AGG | 0.477597 | tig0007112:-99408 | Msa1345260:intron |
| GCTAATTCAGGAGGAGGCGG+AGG | 0.521330 | tig0007112:-99411 | Msa1345260:intron |
| TGTTTGTTAGGTATATCAAA+AGG | 0.559357 | tig0007112:-99361 | Msa1345260:CDS |
| TCAGCTAATTCAGGAGGAGG+CGG | 0.575816 | tig0007112:-99414 | Msa1345260:intron |
| TTTAACCCTGCAGTTTGCGG+AGG | 0.598200 | tig0007112:-100530 | Msa1345260:intron |
| CATTAACAATCAAAGGTGAG+AGG | 0.643739 | tig0007112:+99238 | None:intergenic |
| AGTTAATATGCAAATTCTGG+AGG | 0.655323 | tig0007112:-99321 | Msa1345260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAAAAAAAAATACATTT+CGG | + | tig0007112:99621-99640 | None:intergenic | 10.0% |
| !!! | TAAAAAAATATTTTGCATTT+TGG | + | tig0007112:99685-99704 | None:intergenic | 10.0% |
| !!! | TTTAAATAAGTTGTTTTTTT+TGG | - | tig0007112:100211-100230 | Msa1345260:intron | 10.0% |
| !! | GATAAAAAAAAAATACATTT+CGG | + | tig0007112:99621-99640 | None:intergenic | 10.0% |
| !!! | TAAAAAAATATTTTGCATTT+TGG | + | tig0007112:99685-99704 | None:intergenic | 10.0% |
| !!! | TTTAAATAAGTTGTTTTTTT+TGG | - | tig0007112:100211-100230 | Msa1345260:intron | 10.0% |
| !! | TAAATAGAGATAGAATAAAA+AGG | + | tig0007112:99821-99840 | None:intergenic | 15.0% |
| !! | TTTATTCTATCTCTATTTAT+AGG | - | tig0007112:99822-99841 | Msa1345260:intron | 15.0% |
| !!! | TTTGAAATTTTTTGAAATTC+AGG | + | tig0007112:99917-99936 | None:intergenic | 15.0% |
| !!! | AATAAGCTGTTTTTAAAATA+AGG | - | tig0007112:100152-100171 | Msa1345260:intron | 15.0% |
| !! | AAGAACTGTTAATAAATTAA+CGG | - | tig0007112:100342-100361 | Msa1345260:intron | 15.0% |
| !! | TAAATAGAGATAGAATAAAA+AGG | + | tig0007112:99821-99840 | None:intergenic | 15.0% |
| !! | TTTATTCTATCTCTATTTAT+AGG | - | tig0007112:99822-99841 | Msa1345260:intron | 15.0% |
| !!! | TTTGAAATTTTTTGAAATTC+AGG | + | tig0007112:99917-99936 | None:intergenic | 15.0% |
| !!! | AATAAGCTGTTTTTAAAATA+AGG | - | tig0007112:100152-100171 | Msa1345260:intron | 15.0% |
| !! | AAGAACTGTTAATAAATTAA+CGG | - | tig0007112:100342-100361 | Msa1345260:intron | 15.0% |
| !! | AACACAATTAAATTCACAAA+AGG | + | tig0007112:99643-99662 | None:intergenic | 20.0% |
| !!! | TTGCATTTTGGATAAAAAAA+AGG | + | tig0007112:99673-99692 | None:intergenic | 20.0% |
| !!! | AGTATTGTAGCAATTTTTTT+GGG | + | tig0007112:99792-99811 | None:intergenic | 20.0% |
| !!! | TAGTATTGTAGCAATTTTTT+TGG | + | tig0007112:99793-99812 | None:intergenic | 20.0% |
| !!! | GTTGATTTTATTGTTACTTA+AGG | + | tig0007112:100053-100072 | None:intergenic | 20.0% |
| !!! | CTTGAACTGTTTTTTTTTTA+AGG | + | tig0007112:100266-100285 | None:intergenic | 20.0% |
| !! | TAAAAAAAAAACAGTTCAAG+TGG | - | tig0007112:100266-100285 | Msa1345260:intron | 20.0% |
| !! | AAATAACTGAACCATTATAA+TGG | + | tig0007112:100381-100400 | None:intergenic | 20.0% |
| !!! | TATAATGGTTCAGTTATTTT+TGG | - | tig0007112:100382-100401 | Msa1345260:intron | 20.0% |
| !! | ATATAGAACATAGATGTATT+CGG | + | tig0007112:100674-100693 | None:intergenic | 20.0% |
| !! | AACACAATTAAATTCACAAA+AGG | + | tig0007112:99643-99662 | None:intergenic | 20.0% |
| !!! | TTGCATTTTGGATAAAAAAA+AGG | + | tig0007112:99673-99692 | None:intergenic | 20.0% |
| !!! | AGTATTGTAGCAATTTTTTT+GGG | + | tig0007112:99792-99811 | None:intergenic | 20.0% |
| !!! | TAGTATTGTAGCAATTTTTT+TGG | + | tig0007112:99793-99812 | None:intergenic | 20.0% |
| !!! | GTTGATTTTATTGTTACTTA+AGG | + | tig0007112:100053-100072 | None:intergenic | 20.0% |
| !!! | CTTGAACTGTTTTTTTTTTA+AGG | + | tig0007112:100266-100285 | None:intergenic | 20.0% |
| !! | TAAAAAAAAAACAGTTCAAG+TGG | - | tig0007112:100266-100285 | Msa1345260:intron | 20.0% |
| !! | AAATAACTGAACCATTATAA+TGG | + | tig0007112:100381-100400 | None:intergenic | 20.0% |
| !!! | TATAATGGTTCAGTTATTTT+TGG | - | tig0007112:100382-100401 | Msa1345260:intron | 20.0% |
| !! | ATATAGAACATAGATGTATT+CGG | + | tig0007112:100674-100693 | None:intergenic | 20.0% |
| ! | TGATGCTCTTATGTTTATAT+AGG | - | tig0007112:99324-99343 | Msa1345260:CDS | 25.0% |
| !!! | TCAAAATATTGGTTTTGGTT+CGG | + | tig0007112:99597-99616 | None:intergenic | 25.0% |
| ! | TACATTTCGGTTCAAAATAT+TGG | + | tig0007112:99608-99627 | None:intergenic | 25.0% |
| ! | TGAAGAAAAAGTAAAGAGAA+AGG | + | tig0007112:99754-99773 | None:intergenic | 25.0% |
| ! | CTGTTAATAAATTAACGGTT+CGG | - | tig0007112:100347-100366 | Msa1345260:intron | 25.0% |
| !!! | TTTCACTGATTTATCAATAG+AGG | + | tig0007112:100443-100462 | None:intergenic | 25.0% |
| ! | ATCTATGTTCTATATACGAA+GGG | - | tig0007112:100679-100698 | Msa1345260:intron | 25.0% |
| !! | TGTTTGTTAGGTATATCAAA+AGG | - | tig0007112:101034-101053 | Msa1345260:intron | 25.0% |
| ! | TAGAGTTAATATGCAAATTC+TGG | - | tig0007112:101071-101090 | Msa1345260:intron | 25.0% |
| ! | TGATGCTCTTATGTTTATAT+AGG | - | tig0007112:99324-99343 | Msa1345260:CDS | 25.0% |
| !!! | TCAAAATATTGGTTTTGGTT+CGG | + | tig0007112:99597-99616 | None:intergenic | 25.0% |
| ! | TACATTTCGGTTCAAAATAT+TGG | + | tig0007112:99608-99627 | None:intergenic | 25.0% |
| ! | TGAAGAAAAAGTAAAGAGAA+AGG | + | tig0007112:99754-99773 | None:intergenic | 25.0% |
| ! | CTGTTAATAAATTAACGGTT+CGG | - | tig0007112:100347-100366 | Msa1345260:intron | 25.0% |
| !!! | TTTCACTGATTTATCAATAG+AGG | + | tig0007112:100443-100462 | None:intergenic | 25.0% |
| ! | ATCTATGTTCTATATACGAA+GGG | - | tig0007112:100679-100698 | Msa1345260:intron | 25.0% |
| !! | TGTTTGTTAGGTATATCAAA+AGG | - | tig0007112:101034-101053 | Msa1345260:intron | 25.0% |
| ! | TAGAGTTAATATGCAAATTC+TGG | - | tig0007112:101071-101090 | Msa1345260:intron | 25.0% |
| TGCTCTTATGTTTATATAGG+AGG | - | tig0007112:99327-99346 | Msa1345260:CDS | 30.0% | |
| GCTCTTATGTTTATATAGGA+GGG | - | tig0007112:99328-99347 | Msa1345260:CDS | 30.0% | |
| TTTATATAGGAGGGTAGAAT+AGG | - | tig0007112:99337-99356 | Msa1345260:CDS | 30.0% | |
| AGGAAGTTTGTGTAAAATGT+AGG | - | tig0007112:99357-99376 | Msa1345260:CDS | 30.0% | |
| GGAAGTTTGTGTAAAATGTA+GGG | - | tig0007112:99358-99377 | Msa1345260:CDS | 30.0% | |
| GAAGTTTGTGTAAAATGTAG+GGG | - | tig0007112:99359-99378 | Msa1345260:CDS | 30.0% | |
| ! | AAGTATAGATGTAAGGGTAT+AGG | - | tig0007112:99385-99404 | Msa1345260:CDS | 30.0% |
| ! | AGTATAGATGTAAGGGTATA+GGG | - | tig0007112:99386-99405 | Msa1345260:CDS | 30.0% |
| TAGGGTATAATTTCCCTATT+AGG | - | tig0007112:99404-99423 | Msa1345260:CDS | 30.0% | |
| AGGGTATAATTTCCCTATTA+GGG | - | tig0007112:99405-99424 | Msa1345260:intron | 30.0% | |
| ACCATTTCAAAAATTCGGTT+CGG | + | tig0007112:99474-99493 | None:intergenic | 30.0% | |
| !!! | ACCGAATTTTTGAAATGGTT+CGG | - | tig0007112:99475-99494 | Msa1345260:intron | 30.0% |
| !!! | TCGGTTCAAAATATTGGTTT+TGG | + | tig0007112:99602-99621 | None:intergenic | 30.0% |
| !! | TATCACAAGAGTACATCTTT+TGG | - | tig0007112:99945-99964 | Msa1345260:intron | 30.0% |
| TGATGTATTGAGAGTAACTA+AGG | + | tig0007112:100108-100127 | None:intergenic | 30.0% | |
| AAAAAACAGTTCAAGTGGTT+TGG | - | tig0007112:100271-100290 | Msa1345260:intron | 30.0% | |
| !!! | TGGTTCAGTTATTTTTGGTT+CGG | - | tig0007112:100387-100406 | Msa1345260:intron | 30.0% |
| ! | ACTGATTTATCAATAGAGGT+GGG | + | tig0007112:100439-100458 | None:intergenic | 30.0% |
| CATCTATGTTCTATATACGA+AGG | - | tig0007112:100678-100697 | Msa1345260:intron | 30.0% | |
| !! | GGTTCTTTGAAATCTGTAAA+CGG | + | tig0007112:100726-100745 | None:intergenic | 30.0% |
| !! | GGTTGATGAATTTAATTGCT+CGG | - | tig0007112:100881-100900 | Msa1345260:intron | 30.0% |
| AGTTAATATGCAAATTCTGG+AGG | - | tig0007112:101074-101093 | Msa1345260:intron | 30.0% | |
| TGCTCTTATGTTTATATAGG+AGG | - | tig0007112:99327-99346 | Msa1345260:CDS | 30.0% | |
| GCTCTTATGTTTATATAGGA+GGG | - | tig0007112:99328-99347 | Msa1345260:CDS | 30.0% | |
| TTTATATAGGAGGGTAGAAT+AGG | - | tig0007112:99337-99356 | Msa1345260:CDS | 30.0% | |
| AGGAAGTTTGTGTAAAATGT+AGG | - | tig0007112:99357-99376 | Msa1345260:CDS | 30.0% | |
| GGAAGTTTGTGTAAAATGTA+GGG | - | tig0007112:99358-99377 | Msa1345260:CDS | 30.0% | |
| GAAGTTTGTGTAAAATGTAG+GGG | - | tig0007112:99359-99378 | Msa1345260:CDS | 30.0% | |
| ! | AAGTATAGATGTAAGGGTAT+AGG | - | tig0007112:99385-99404 | Msa1345260:CDS | 30.0% |
| ! | AGTATAGATGTAAGGGTATA+GGG | - | tig0007112:99386-99405 | Msa1345260:CDS | 30.0% |
| TAGGGTATAATTTCCCTATT+AGG | - | tig0007112:99404-99423 | Msa1345260:CDS | 30.0% | |
| AGGGTATAATTTCCCTATTA+GGG | - | tig0007112:99405-99424 | Msa1345260:intron | 30.0% | |
| ACCATTTCAAAAATTCGGTT+CGG | + | tig0007112:99474-99493 | None:intergenic | 30.0% | |
| !!! | ACCGAATTTTTGAAATGGTT+CGG | - | tig0007112:99475-99494 | Msa1345260:intron | 30.0% |
| !!! | TCGGTTCAAAATATTGGTTT+TGG | + | tig0007112:99602-99621 | None:intergenic | 30.0% |
| !! | TATCACAAGAGTACATCTTT+TGG | - | tig0007112:99945-99964 | Msa1345260:intron | 30.0% |
| TGATGTATTGAGAGTAACTA+AGG | + | tig0007112:100108-100127 | None:intergenic | 30.0% | |
| AAAAAACAGTTCAAGTGGTT+TGG | - | tig0007112:100271-100290 | Msa1345260:intron | 30.0% | |
| !!! | TGGTTCAGTTATTTTTGGTT+CGG | - | tig0007112:100387-100406 | Msa1345260:intron | 30.0% |
| ! | ACTGATTTATCAATAGAGGT+GGG | + | tig0007112:100439-100458 | None:intergenic | 30.0% |
| CATCTATGTTCTATATACGA+AGG | - | tig0007112:100678-100697 | Msa1345260:intron | 30.0% | |
| !! | GGTTCTTTGAAATCTGTAAA+CGG | + | tig0007112:100726-100745 | None:intergenic | 30.0% |
| !! | GGTTGATGAATTTAATTGCT+CGG | - | tig0007112:100881-100900 | Msa1345260:intron | 30.0% |
| AGTTAATATGCAAATTCTGG+AGG | - | tig0007112:101074-101093 | Msa1345260:intron | 30.0% | |
| !!! | CTCAACTTTTTCAAGCTTTC+CGG | + | tig0007112:99286-99305 | None:intergenic | 35.0% |
| ! | GGGTGAAAGTATAGATGTAA+GGG | - | tig0007112:99379-99398 | Msa1345260:CDS | 35.0% |
| GGGTATAATTTCCCTATTAG+GGG | - | tig0007112:99406-99425 | Msa1345260:intron | 35.0% | |
| TATAATTTCCCTATTAGGGG+TGG | - | tig0007112:99409-99428 | Msa1345260:intron | 35.0% | |
| ATAATTTCCCTATTAGGGGT+GGG | - | tig0007112:99410-99429 | Msa1345260:intron | 35.0% | |
| !! | TTCAAAAATTCGGTTCGGTT+CGG | + | tig0007112:99469-99488 | None:intergenic | 35.0% |
| !! | ACCGAACCGAATTTTTGAAA+TGG | - | tig0007112:99470-99489 | Msa1345260:intron | 35.0% |
| CCCGAACCATTTCAAAAATT+CGG | + | tig0007112:99479-99498 | None:intergenic | 35.0% | |
| !!! | CCGAATTTTTGAAATGGTTC+GGG | - | tig0007112:99476-99495 | Msa1345260:intron | 35.0% |
| ! | ACCATAACTTTGGTTCAGTT+CGG | + | tig0007112:99537-99556 | None:intergenic | 35.0% |
| ACTGAACCAAAGTTATGGTT+CGG | - | tig0007112:99538-99557 | Msa1345260:intron | 35.0% | |
| TCGGTTCATAGGTAAGAAAA+CGG | + | tig0007112:99568-99587 | None:intergenic | 35.0% | |
| !!! | ATATTGGTTTTGGTTCGGTT+CGG | + | tig0007112:99592-99611 | None:intergenic | 35.0% |
| AAACCACTTGAACTCTTTGT+TGG | + | tig0007112:100243-100262 | None:intergenic | 35.0% | |
| !!! | CAGTTATTTTTGGTTCGGTT+CGG | - | tig0007112:100392-100411 | Msa1345260:intron | 35.0% |
| !! | CACTGATTTATCAATAGAGG+TGG | + | tig0007112:100440-100459 | None:intergenic | 35.0% |
| TGATGATCGAAATCCTTTCT+AGG | - | tig0007112:100545-100564 | Msa1345260:intron | 35.0% | |
| GATGATCGAAATCCTTTCTA+GGG | - | tig0007112:100546-100565 | Msa1345260:intron | 35.0% | |
| TGTTCAAATCAACCCTAGAA+AGG | + | tig0007112:100561-100580 | None:intergenic | 35.0% | |
| ACAGATTTCAAAGAACCCTA+TGG | - | tig0007112:100729-100748 | Msa1345260:intron | 35.0% | |
| GATGAATTTAATTGCTCGGT+TGG | - | tig0007112:100885-100904 | Msa1345260:intron | 35.0% | |
| ! | AGAATCTGTTGGTGGAAATT+CGG | - | tig0007112:100908-100927 | Msa1345260:intron | 35.0% |
| GGAAATTCGGTTACTCAAAA+AGG | - | tig0007112:100921-100940 | Msa1345260:intron | 35.0% | |
| AATAGAAGCTCAGCTAATTC+AGG | - | tig0007112:100972-100991 | Msa1345260:intron | 35.0% | |
| ATCATCTTTGGGTGTTTGTT+AGG | - | tig0007112:101022-101041 | Msa1345260:intron | 35.0% | |
| !!! | CTCAACTTTTTCAAGCTTTC+CGG | + | tig0007112:99286-99305 | None:intergenic | 35.0% |
| ! | GGGTGAAAGTATAGATGTAA+GGG | - | tig0007112:99379-99398 | Msa1345260:CDS | 35.0% |
| GGGTATAATTTCCCTATTAG+GGG | - | tig0007112:99406-99425 | Msa1345260:intron | 35.0% | |
| TATAATTTCCCTATTAGGGG+TGG | - | tig0007112:99409-99428 | Msa1345260:intron | 35.0% | |
| ATAATTTCCCTATTAGGGGT+GGG | - | tig0007112:99410-99429 | Msa1345260:intron | 35.0% | |
| !! | TTCAAAAATTCGGTTCGGTT+CGG | + | tig0007112:99469-99488 | None:intergenic | 35.0% |
| !! | ACCGAACCGAATTTTTGAAA+TGG | - | tig0007112:99470-99489 | Msa1345260:intron | 35.0% |
| CCCGAACCATTTCAAAAATT+CGG | + | tig0007112:99479-99498 | None:intergenic | 35.0% | |
| !!! | CCGAATTTTTGAAATGGTTC+GGG | - | tig0007112:99476-99495 | Msa1345260:intron | 35.0% |
| ! | ACCATAACTTTGGTTCAGTT+CGG | + | tig0007112:99537-99556 | None:intergenic | 35.0% |
| ACTGAACCAAAGTTATGGTT+CGG | - | tig0007112:99538-99557 | Msa1345260:intron | 35.0% | |
| TCGGTTCATAGGTAAGAAAA+CGG | + | tig0007112:99568-99587 | None:intergenic | 35.0% | |
| !!! | ATATTGGTTTTGGTTCGGTT+CGG | + | tig0007112:99592-99611 | None:intergenic | 35.0% |
| AAACCACTTGAACTCTTTGT+TGG | + | tig0007112:100243-100262 | None:intergenic | 35.0% | |
| !!! | CAGTTATTTTTGGTTCGGTT+CGG | - | tig0007112:100392-100411 | Msa1345260:intron | 35.0% |
| !! | CACTGATTTATCAATAGAGG+TGG | + | tig0007112:100440-100459 | None:intergenic | 35.0% |
| TGATGATCGAAATCCTTTCT+AGG | - | tig0007112:100545-100564 | Msa1345260:intron | 35.0% | |
| GATGATCGAAATCCTTTCTA+GGG | - | tig0007112:100546-100565 | Msa1345260:intron | 35.0% | |
| TGTTCAAATCAACCCTAGAA+AGG | + | tig0007112:100561-100580 | None:intergenic | 35.0% | |
| ACAGATTTCAAAGAACCCTA+TGG | - | tig0007112:100729-100748 | Msa1345260:intron | 35.0% | |
| GATGAATTTAATTGCTCGGT+TGG | - | tig0007112:100885-100904 | Msa1345260:intron | 35.0% | |
| ! | AGAATCTGTTGGTGGAAATT+CGG | - | tig0007112:100908-100927 | Msa1345260:intron | 35.0% |
| GGAAATTCGGTTACTCAAAA+AGG | - | tig0007112:100921-100940 | Msa1345260:intron | 35.0% | |
| AATAGAAGCTCAGCTAATTC+AGG | - | tig0007112:100972-100991 | Msa1345260:intron | 35.0% | |
| ATCATCTTTGGGTGTTTGTT+AGG | - | tig0007112:101022-101041 | Msa1345260:intron | 35.0% | |
| AAAGAAGATCCGTAGCAAAC+CGG | - | tig0007112:99264-99283 | Msa1345260:CDS | 40.0% | |
| ! | GGGGTGAAAGTATAGATGTA+AGG | - | tig0007112:99378-99397 | Msa1345260:CDS | 40.0% |
| !!! | TCGGTTTGGTTCGGTTTTTT+AGG | + | tig0007112:99450-99469 | None:intergenic | 40.0% |
| !! | ATACATGAAACGGTTCGGTT+CGG | + | tig0007112:99506-99525 | None:intergenic | 40.0% |
| ! | GGTTAGCTCCATACATGAAA+CGG | + | tig0007112:99516-99535 | None:intergenic | 40.0% |
| ACCGAACTGAACCAAAGTTA+TGG | - | tig0007112:99533-99552 | Msa1345260:intron | 40.0% | |
| GGTTAACCGAACCATAACTT+TGG | + | tig0007112:99547-99566 | None:intergenic | 40.0% | |
| TTGTTTAACCCTGCAGTTTG+CGG | - | tig0007112:99862-99881 | Msa1345260:intron | 40.0% | |
| GATCCAACAAAGAGTTCAAG+TGG | - | tig0007112:100237-100256 | Msa1345260:intron | 40.0% | |
| !! | ACAGTTCAAGTGGTTTGGTT+CGG | - | tig0007112:100276-100295 | Msa1345260:intron | 40.0% |
| CGGTTCGTGAACCATTATAA+TGG | - | tig0007112:100367-100386 | Msa1345260:intron | 40.0% | |
| !!! | ATTTTTGGTTCGGTTCGGTT+CGG | - | tig0007112:100397-100416 | Msa1345260:intron | 40.0% |
| ! | TCAGCGCTTTCGATTCTTTT+GGG | + | tig0007112:100477-100496 | None:intergenic | 40.0% |
| ! | ATCAGCGCTTTCGATTCTTT+TGG | + | tig0007112:100478-100497 | None:intergenic | 40.0% |
| !! | AAAAGAATCGAAAGCGCTGA+TGG | - | tig0007112:100477-100496 | Msa1345260:intron | 40.0% |
| ATTTCGATCATCAACTCCTC+CGG | + | tig0007112:100538-100557 | None:intergenic | 40.0% | |
| TGAACAATCCTCTCCAATTG+AGG | - | tig0007112:100575-100594 | Msa1345260:intron | 40.0% | |
| GAATGGTTCTTCACGAATTG+AGG | + | tig0007112:100637-100656 | None:intergenic | 40.0% | |
| ATGTTCTATATACGAAGGGC+AGG | - | tig0007112:100683-100702 | Msa1345260:intron | 40.0% | |
| TGTTCTATATACGAAGGGCA+GGG | - | tig0007112:100684-100703 | Msa1345260:intron | 40.0% | |
| !! | TCGTTGTTTTCTTCTTCTGG+CGG | + | tig0007112:100757-100776 | None:intergenic | 40.0% |
| !! | TCGTCGTTGTTTTCTTCTTC+TGG | + | tig0007112:100760-100779 | None:intergenic | 40.0% |
| AAAGATGCTTCTGCTGAGAA+AGG | - | tig0007112:100844-100863 | Msa1345260:intron | 40.0% | |
| AAGATGCTTCTGCTGAGAAA+GGG | - | tig0007112:100845-100864 | Msa1345260:intron | 40.0% | |
| AAAGAAGATCCGTAGCAAAC+CGG | - | tig0007112:99264-99283 | Msa1345260:CDS | 40.0% | |
| ! | GGGGTGAAAGTATAGATGTA+AGG | - | tig0007112:99378-99397 | Msa1345260:CDS | 40.0% |
| !!! | TCGGTTTGGTTCGGTTTTTT+AGG | + | tig0007112:99450-99469 | None:intergenic | 40.0% |
| !! | ATACATGAAACGGTTCGGTT+CGG | + | tig0007112:99506-99525 | None:intergenic | 40.0% |
| ! | GGTTAGCTCCATACATGAAA+CGG | + | tig0007112:99516-99535 | None:intergenic | 40.0% |
| ACCGAACTGAACCAAAGTTA+TGG | - | tig0007112:99533-99552 | Msa1345260:intron | 40.0% | |
| GGTTAACCGAACCATAACTT+TGG | + | tig0007112:99547-99566 | None:intergenic | 40.0% | |
| TTGTTTAACCCTGCAGTTTG+CGG | - | tig0007112:99862-99881 | Msa1345260:intron | 40.0% | |
| GATCCAACAAAGAGTTCAAG+TGG | - | tig0007112:100237-100256 | Msa1345260:intron | 40.0% | |
| !! | ACAGTTCAAGTGGTTTGGTT+CGG | - | tig0007112:100276-100295 | Msa1345260:intron | 40.0% |
| CGGTTCGTGAACCATTATAA+TGG | - | tig0007112:100367-100386 | Msa1345260:intron | 40.0% | |
| !!! | ATTTTTGGTTCGGTTCGGTT+CGG | - | tig0007112:100397-100416 | Msa1345260:intron | 40.0% |
| ! | TCAGCGCTTTCGATTCTTTT+GGG | + | tig0007112:100477-100496 | None:intergenic | 40.0% |
| ! | ATCAGCGCTTTCGATTCTTT+TGG | + | tig0007112:100478-100497 | None:intergenic | 40.0% |
| !! | AAAAGAATCGAAAGCGCTGA+TGG | - | tig0007112:100477-100496 | Msa1345260:intron | 40.0% |
| ATTTCGATCATCAACTCCTC+CGG | + | tig0007112:100538-100557 | None:intergenic | 40.0% | |
| TGAACAATCCTCTCCAATTG+AGG | - | tig0007112:100575-100594 | Msa1345260:intron | 40.0% | |
| GAATGGTTCTTCACGAATTG+AGG | + | tig0007112:100637-100656 | None:intergenic | 40.0% | |
| ATGTTCTATATACGAAGGGC+AGG | - | tig0007112:100683-100702 | Msa1345260:intron | 40.0% | |
| TGTTCTATATACGAAGGGCA+GGG | - | tig0007112:100684-100703 | Msa1345260:intron | 40.0% | |
| !! | TCGTTGTTTTCTTCTTCTGG+CGG | + | tig0007112:100757-100776 | None:intergenic | 40.0% |
| !! | TCGTCGTTGTTTTCTTCTTC+TGG | + | tig0007112:100760-100779 | None:intergenic | 40.0% |
| AAAGATGCTTCTGCTGAGAA+AGG | - | tig0007112:100844-100863 | Msa1345260:intron | 40.0% | |
| AAGATGCTTCTGCTGAGAAA+GGG | - | tig0007112:100845-100864 | Msa1345260:intron | 40.0% | |
| !! | TCAAGCTTTCCGGTTTGCTA+CGG | + | tig0007112:99276-99295 | None:intergenic | 45.0% |
| !! | AAATTCGGTTCGGTTCGGTT+TGG | + | tig0007112:99464-99483 | None:intergenic | 45.0% |
| GAACCGAACCGTTTCATGTA+TGG | - | tig0007112:99505-99524 | Msa1345260:intron | 45.0% | |
| GCTCCATACATGAAACGGTT+CGG | + | tig0007112:99511-99530 | None:intergenic | 45.0% | |
| TTATACCTCCGCAAACTGCA+GGG | + | tig0007112:99873-99892 | None:intergenic | 45.0% | |
| GGACATAAGTCGATGCAGTT+TGG | + | tig0007112:99896-99915 | None:intergenic | 45.0% | |
| !! | GTGGTTTGGTTCGGTTCAAA+CGG | - | tig0007112:100285-100304 | Msa1345260:intron | 45.0% |
| !! | TTGGTTCGGTTCAAACGGTT+CGG | - | tig0007112:100290-100309 | Msa1345260:intron | 45.0% |
| !! | GGTTCAAGATGGTTCGGTTA+TGG | - | tig0007112:100316-100335 | Msa1345260:intron | 45.0% |
| CGGTGAAATATCTGCGAGAA+TGG | + | tig0007112:100654-100673 | None:intergenic | 45.0% | |
| AGAAAGGGACGTGGAAACAT+TGG | - | tig0007112:100860-100879 | Msa1345260:intron | 45.0% | |
| AGAAGCTCAGCTAATTCAGG+AGG | - | tig0007112:100975-100994 | Msa1345260:intron | 45.0% | |
| TAGCGCAGTTGGATCATCTT+TGG | - | tig0007112:101010-101029 | Msa1345260:intron | 45.0% | |
| AGCGCAGTTGGATCATCTTT+GGG | - | tig0007112:101011-101030 | Msa1345260:intron | 45.0% | |
| !! | TCAAGCTTTCCGGTTTGCTA+CGG | + | tig0007112:99276-99295 | None:intergenic | 45.0% |
| !! | AAATTCGGTTCGGTTCGGTT+TGG | + | tig0007112:99464-99483 | None:intergenic | 45.0% |
| GAACCGAACCGTTTCATGTA+TGG | - | tig0007112:99505-99524 | Msa1345260:intron | 45.0% | |
| GCTCCATACATGAAACGGTT+CGG | + | tig0007112:99511-99530 | None:intergenic | 45.0% | |
| TTATACCTCCGCAAACTGCA+GGG | + | tig0007112:99873-99892 | None:intergenic | 45.0% | |
| GGACATAAGTCGATGCAGTT+TGG | + | tig0007112:99896-99915 | None:intergenic | 45.0% | |
| !! | GTGGTTTGGTTCGGTTCAAA+CGG | - | tig0007112:100285-100304 | Msa1345260:intron | 45.0% |
| !! | TTGGTTCGGTTCAAACGGTT+CGG | - | tig0007112:100290-100309 | Msa1345260:intron | 45.0% |
| !! | GGTTCAAGATGGTTCGGTTA+TGG | - | tig0007112:100316-100335 | Msa1345260:intron | 45.0% |
| CGGTGAAATATCTGCGAGAA+TGG | + | tig0007112:100654-100673 | None:intergenic | 45.0% | |
| AGAAAGGGACGTGGAAACAT+TGG | - | tig0007112:100860-100879 | Msa1345260:intron | 45.0% | |
| AGAAGCTCAGCTAATTCAGG+AGG | - | tig0007112:100975-100994 | Msa1345260:intron | 45.0% | |
| TAGCGCAGTTGGATCATCTT+TGG | - | tig0007112:101010-101029 | Msa1345260:intron | 45.0% | |
| AGCGCAGTTGGATCATCTTT+GGG | - | tig0007112:101011-101030 | Msa1345260:intron | 45.0% | |
| AACCATGCCCACCCCTAATA+GGG | + | tig0007112:99420-99439 | None:intergenic | 50.0% | |
| TATTAGGGGTGGGCATGGTT+CGG | - | tig0007112:99420-99439 | Msa1345260:intron | 50.0% | |
| !! | TTCGGTTCGGTTCGGTTCAT+AGG | + | tig0007112:100405-100424 | None:intergenic | 50.0% |
| !!! | GGTTTTGGTTCGGTTCGGTT+CGG | + | tig0007112:99587-99606 | None:intergenic | 50.0% |
| TTTAACCCTGCAGTTTGCGG+AGG | - | tig0007112:99865-99884 | Msa1345260:intron | 50.0% | |
| GTTATACCTCCGCAAACTGC+AGG | + | tig0007112:99874-99893 | None:intergenic | 50.0% | |
| !! | TCGGTTCAAACGGTTCGGTT+CGG | - | tig0007112:100295-100314 | Msa1345260:intron | 50.0% |
| !! | CGGTTCGGTTCAAGATGGTT+CGG | - | tig0007112:100310-100329 | Msa1345260:intron | 50.0% |
| !! | AGAATCGAAAGCGCTGATGG+CGG | - | tig0007112:100480-100499 | Msa1345260:intron | 50.0% |
| CATCAACTCCTCCGGTAGTA+CGG | + | tig0007112:100530-100549 | None:intergenic | 50.0% | |
| CAAACGCACCTCAATTGGAG+AGG | + | tig0007112:100586-100605 | None:intergenic | 50.0% | |
| GCTTGCAAACGCACCTCAAT+TGG | + | tig0007112:100591-100610 | None:intergenic | 50.0% | |
| TGCTCGGTTGGAGAATCTGT+TGG | - | tig0007112:100897-100916 | Msa1345260:intron | 50.0% | |
| TCGGTTGGAGAATCTGTTGG+TGG | - | tig0007112:100900-100919 | Msa1345260:intron | 50.0% | |
| AGCTCAGCTAATTCAGGAGG+AGG | - | tig0007112:100978-100997 | Msa1345260:intron | 50.0% | |
| TCAGCTAATTCAGGAGGAGG+CGG | - | tig0007112:100981-101000 | Msa1345260:intron | 50.0% | |
| AACCATGCCCACCCCTAATA+GGG | + | tig0007112:99420-99439 | None:intergenic | 50.0% | |
| TATTAGGGGTGGGCATGGTT+CGG | - | tig0007112:99420-99439 | Msa1345260:intron | 50.0% | |
| !! | TTCGGTTCGGTTCGGTTCAT+AGG | + | tig0007112:100405-100424 | None:intergenic | 50.0% |
| !!! | GGTTTTGGTTCGGTTCGGTT+CGG | + | tig0007112:99587-99606 | None:intergenic | 50.0% |
| TTTAACCCTGCAGTTTGCGG+AGG | - | tig0007112:99865-99884 | Msa1345260:intron | 50.0% | |
| GTTATACCTCCGCAAACTGC+AGG | + | tig0007112:99874-99893 | None:intergenic | 50.0% | |
| !! | TCGGTTCAAACGGTTCGGTT+CGG | - | tig0007112:100295-100314 | Msa1345260:intron | 50.0% |
| !! | CGGTTCGGTTCAAGATGGTT+CGG | - | tig0007112:100310-100329 | Msa1345260:intron | 50.0% |
| !! | AGAATCGAAAGCGCTGATGG+CGG | - | tig0007112:100480-100499 | Msa1345260:intron | 50.0% |
| CATCAACTCCTCCGGTAGTA+CGG | + | tig0007112:100530-100549 | None:intergenic | 50.0% | |
| CAAACGCACCTCAATTGGAG+AGG | + | tig0007112:100586-100605 | None:intergenic | 50.0% | |
| GCTTGCAAACGCACCTCAAT+TGG | + | tig0007112:100591-100610 | None:intergenic | 50.0% | |
| TGCTCGGTTGGAGAATCTGT+TGG | - | tig0007112:100897-100916 | Msa1345260:intron | 50.0% | |
| TCGGTTGGAGAATCTGTTGG+TGG | - | tig0007112:100900-100919 | Msa1345260:intron | 50.0% | |
| AGCTCAGCTAATTCAGGAGG+AGG | - | tig0007112:100978-100997 | Msa1345260:intron | 50.0% | |
| TCAGCTAATTCAGGAGGAGG+CGG | - | tig0007112:100981-101000 | Msa1345260:intron | 50.0% | |
| TTCCCTATTAGGGGTGGGCA+TGG | - | tig0007112:99415-99434 | Msa1345260:intron | 55.0% | |
| GAACCATGCCCACCCCTAAT+AGG | + | tig0007112:99421-99440 | None:intergenic | 55.0% | |
| !! | CGGTTCGGTTCGGTTTGGTT+CGG | + | tig0007112:99459-99478 | None:intergenic | 55.0% |
| !! | CGGTTCGGTTCGGTTCAAGA+TGG | - | tig0007112:100305-100324 | Msa1345260:intron | 55.0% |
| !! | GTTCGGTTCGGTTCGGTTCA+TGG | - | tig0007112:100404-100423 | Msa1345260:intron | 55.0% |
| TGAGGTGCGTTTGCAAGCTG+TGG | - | tig0007112:100593-100612 | Msa1345260:intron | 55.0% | |
| ATACGAAGGGCAGGGAACAC+TGG | - | tig0007112:100692-100711 | Msa1345260:intron | 55.0% | |
| CTTCTTCTGGCGGCACCATA+GGG | + | tig0007112:100747-100766 | None:intergenic | 55.0% | |
| TCTTCTTCTGGCGGCACCAT+AGG | + | tig0007112:100748-100767 | None:intergenic | 55.0% | |
| CTTCTGCTGAGAAAGGGACG+TGG | - | tig0007112:100851-100870 | Msa1345260:intron | 55.0% | |
| TTCCCTATTAGGGGTGGGCA+TGG | - | tig0007112:99415-99434 | Msa1345260:intron | 55.0% | |
| GAACCATGCCCACCCCTAAT+AGG | + | tig0007112:99421-99440 | None:intergenic | 55.0% | |
| !! | CGGTTCGGTTCGGTTTGGTT+CGG | + | tig0007112:99459-99478 | None:intergenic | 55.0% |
| !! | CGGTTCGGTTCGGTTCAAGA+TGG | - | tig0007112:100305-100324 | Msa1345260:intron | 55.0% |
| !! | GTTCGGTTCGGTTCGGTTCA+TGG | - | tig0007112:100404-100423 | Msa1345260:intron | 55.0% |
| TGAGGTGCGTTTGCAAGCTG+TGG | - | tig0007112:100593-100612 | Msa1345260:intron | 55.0% | |
| ATACGAAGGGCAGGGAACAC+TGG | - | tig0007112:100692-100711 | Msa1345260:intron | 55.0% | |
| CTTCTTCTGGCGGCACCATA+GGG | + | tig0007112:100747-100766 | None:intergenic | 55.0% | |
| TCTTCTTCTGGCGGCACCAT+AGG | + | tig0007112:100748-100767 | None:intergenic | 55.0% | |
| CTTCTGCTGAGAAAGGGACG+TGG | - | tig0007112:100851-100870 | Msa1345260:intron | 55.0% | |
| ! | GTCACCGAGCACCGTACTAC+CGG | - | tig0007112:100516-100535 | Msa1345260:intron | 60.0% |
| TCCTCCGGTAGTACGGTGCT+CGG | + | tig0007112:100523-100542 | None:intergenic | 60.0% | |
| GCTAATTCAGGAGGAGGCGG+AGG | - | tig0007112:100984-101003 | Msa1345260:intron | 60.0% | |
| AATTCAGGAGGAGGCGGAGG+AGG | - | tig0007112:100987-101006 | Msa1345260:intron | 60.0% | |
| ! | GTCACCGAGCACCGTACTAC+CGG | - | tig0007112:100516-100535 | Msa1345260:intron | 60.0% |
| TCCTCCGGTAGTACGGTGCT+CGG | + | tig0007112:100523-100542 | None:intergenic | 60.0% | |
| GCTAATTCAGGAGGAGGCGG+AGG | - | tig0007112:100984-101003 | Msa1345260:intron | 60.0% | |
| AATTCAGGAGGAGGCGGAGG+AGG | - | tig0007112:100987-101006 | Msa1345260:intron | 60.0% | |
| !! | AGCGCTGATGGCGGAAGCCA+CGG | - | tig0007112:100489-100508 | Msa1345260:intron | 65.0% |
| ! | ACCGAGCACCGTACTACCGG+AGG | - | tig0007112:100519-100538 | Msa1345260:intron | 65.0% |
| !! | AGCGCTGATGGCGGAAGCCA+CGG | - | tig0007112:100489-100508 | Msa1345260:intron | 65.0% |
| ! | ACCGAGCACCGTACTACCGG+AGG | - | tig0007112:100519-100538 | Msa1345260:intron | 65.0% |
| !! | GCTGATGGCGGAAGCCACGG+CGG | - | tig0007112:100492-100511 | Msa1345260:intron | 70.0% |
| GGCGGAGGAGGTAGCGCAGT+TGG | - | tig0007112:100999-101018 | Msa1345260:intron | 70.0% | |
| !! | GCTGATGGCGGAAGCCACGG+CGG | - | tig0007112:100492-100511 | Msa1345260:intron | 70.0% |
| GGCGGAGGAGGTAGCGCAGT+TGG | - | tig0007112:100999-101018 | Msa1345260:intron | 70.0% | |
| ! | GGTGCTCGGTGACTCCGCCG+TGG | + | tig0007112:100509-100528 | None:intergenic | 75.0% |
| ! | GGTGCTCGGTGACTCCGCCG+TGG | + | tig0007112:100509-100528 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0007112 | gene | 99247 | 101170 | 99247 | ID=Msa1345260;Name=Msa1345260 |
| tig0007112 | mRNA | 99247 | 101170 | 99247 | ID=Msa1345260-mRNA-1;Parent=Msa1345260;Name=Msa1345260-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0|0.33|0.5|0.66|3|0|63 |
| tig0007112 | exon | 101165 | 101170 | 101165 | ID=Msa1345260-mRNA-1:exon:4902;Parent=Msa1345260-mRNA-1 |
| tig0007112 | exon | 100531 | 100539 | 100531 | ID=Msa1345260-mRNA-1:exon:4901;Parent=Msa1345260-mRNA-1 |
| tig0007112 | exon | 99247 | 99423 | 99247 | ID=Msa1345260-mRNA-1:exon:4900;Parent=Msa1345260-mRNA-1 |
| tig0007112 | CDS | 101165 | 101170 | 101165 | ID=Msa1345260-mRNA-1:cds;Parent=Msa1345260-mRNA-1 |
| tig0007112 | CDS | 100531 | 100539 | 100531 | ID=Msa1345260-mRNA-1:cds;Parent=Msa1345260-mRNA-1 |
| tig0007112 | CDS | 99247 | 99423 | 99247 | ID=Msa1345260-mRNA-1:cds;Parent=Msa1345260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
