AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1233890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233890 MtrunA17_Chr8g0343561 98.214 224 4 0 1 224 1 224 4.12e-160 441
Msa1233890 MtrunA17_Chr2g0300321 85.714 224 31 1 1 224 1 223 7.28e-119 337
Msa1233890 MtrunA17_Chr1g0183621 41.553 219 117 1 4 222 7 214 6.89e-52 167
Msa1233890 MtrunA17_Chr2g0303251 39.732 224 122 3 4 224 3 216 1.98e-44 148
Msa1233890 MtrunA17_Chr7g0261511 45.662 219 108 2 4 222 3 210 1.06e-42 143
Msa1233890 MtrunA17_Chr4g0028231 27.602 221 157 3 4 222 7 226 6.30e-19 82.0
Msa1233890 MtrunA17_Chr2g0330571 25.294 170 115 2 53 222 45 202 8.43e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233890 AT2G06530.1 87.556 225 26 2 1 224 2 225 4.79e-126 355
Msa1233890 AT2G06530.2 88.293 205 22 2 21 224 1 204 5.91e-113 322
Msa1233890 AT1G03950.1 42.922 219 114 3 4 222 3 210 1.00e-53 172
Msa1233890 AT5G44560.1 39.367 221 133 1 4 224 3 222 9.44e-48 157
Msa1233890 AT5G44560.4 42.045 176 102 0 4 179 3 178 5.72e-45 149
Msa1233890 AT5G44560.2 40.000 200 119 1 25 224 4 202 9.07e-43 143
Msa1233890 AT5G44560.3 37.857 140 86 1 4 142 3 142 7.73e-27 101
Msa1233890 AT5G22950.1 28.704 216 149 3 11 222 14 228 1.47e-17 78.6
Msa1233890 AT1G17730.1 25.000 196 133 2 27 222 19 200 1.74e-12 64.3
Msa1233890 AT3G45000.1 26.214 206 130 7 26 222 7 199 4.80e-11 60.5

Find 59 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTGTTGCTTTGAGAATTC+AGG 0.282686 8_2:+11014956 Msa1233890:CDS
AGCGCCATTGCAAACAAAAT+TGG 0.290097 8_2:+11013762 Msa1233890:five_prime_UTR
AAATACCATTTGTCCTTGTT+TGG 0.313748 8_2:-11014183 None:intergenic
TGCCGCTGGCGCAGCGGCTG+AGG 0.335018 8_2:-11016139 None:intergenic
GATTAATTATAACCTTAGTT+TGG 0.338273 8_2:+11013704 Msa1233890:five_prime_UTR
TTTAAAATTGATATATATCA+TGG 0.344687 8_2:-11016412 None:intergenic
TTAGGGTGCTGTGAGGGTTA+TGG 0.353676 8_2:+11014869 Msa1233890:intron
CTGCGCCAGCGGCAAAGAAC+AGG 0.367363 8_2:+11016148 Msa1233890:CDS
AGGCTAGGTTAGATAATCTA+AGG 0.381318 8_2:+11016226 Msa1233890:CDS
GACCGAAGATCTTGTGAATC+AGG 0.389731 8_2:+11015655 Msa1233890:CDS
AAGCTTAAATCGCAACTTCA+AGG 0.395760 8_2:+11014936 Msa1233890:CDS
GTCATCATTCCCCGTTGGTT+CGG 0.402387 8_2:-11016181 None:intergenic
GGAACTTGTTTCTGAGGTAA+TGG 0.405606 8_2:+11015586 Msa1233890:CDS
GTTGCTCAGGCCGAACCAAC+GGG 0.406809 8_2:+11016171 Msa1233890:CDS
GAACTTGTTTCTGAGGTAAT+GGG 0.408793 8_2:+11015587 Msa1233890:CDS
AAGCAATGGGTCAAATGAAT+AGG 0.409703 8_2:+11015501 Msa1233890:CDS
TGCATTATCTTCTGTAAAGA+AGG 0.410358 8_2:-11015536 None:intergenic
GCAACCCTGTTCTTTGCCGC+TGG 0.421155 8_2:-11016153 None:intergenic
AATGTGATGCGTAGGAATAT+TGG 0.422761 8_2:+11016251 Msa1233890:exon
GCAATTGATGATGCTTTAGA+AGG 0.423361 8_2:+11015614 Msa1233890:CDS
GGCAAAGAACAGGGTTGCTC+AGG 0.444566 8_2:+11016158 Msa1233890:CDS
AACCTCAGCCGCTGCGCCAG+CGG 0.466248 8_2:+11016137 Msa1233890:CDS
GCAGCGGCTGAGGTTGATGC+AGG 0.471839 8_2:-11016129 None:intergenic
GAATGCCAAACAAGGACAAA+TGG 0.480489 8_2:+11014178 Msa1233890:CDS
AACCTGATTCACAAGATCTT+CGG 0.483416 8_2:-11015657 None:intergenic
TGCTGTGAGGGTTATGGCTA+AGG 0.493691 8_2:+11014875 Msa1233890:CDS
AAAGGAGTTACTAAAGCAAT+GGG 0.498174 8_2:+11015488 Msa1233890:CDS
ATGAACTATAATCCAAACTA+AGG 0.500638 8_2:-11013716 None:intergenic
AATGTTTGATGTGATAAAAG+AGG 0.502808 8_2:-11016465 None:intergenic
TGGAATAGATGATGATCTAC+AGG 0.504241 8_2:+11016206 Msa1233890:CDS
TGAAAGGCAGAATGAGAAGA+TGG 0.511267 8_2:+11015565 Msa1233890:CDS
AGATAATGCAAGAGTTTGAA+AGG 0.512294 8_2:+11015549 Msa1233890:CDS
AGTCTATTAGAGATATTGAA+AGG 0.515332 8_2:+11014102 Msa1233890:CDS
TTTAGAAGGTGATGAAGAAG+AGG 0.518323 8_2:+11015628 Msa1233890:CDS
GAAAGGAGTTACTAAAGCAA+TGG 0.519472 8_2:+11015487 Msa1233890:CDS
GGTTGCTCAGGCCGAACCAA+CGG 0.526643 8_2:+11016170 Msa1233890:CDS
GTCTATTAGAGATATTGAAA+GGG 0.532893 8_2:+11014103 Msa1233890:CDS
CTTAAATCTACTCAAGCGAT+GGG 0.543703 8_2:+11015455 Msa1233890:CDS
CCACCGTCATCATTCCCCGT+TGG 0.544851 8_2:-11016186 None:intergenic
CTAAGGAAAATGTGATGCGT+AGG 0.559547 8_2:+11016243 Msa1233890:exon
TGCGCCAGCGGCAAAGAACA+GGG 0.563121 8_2:+11016149 Msa1233890:CDS
AATTTGTTAGGGTGCTGTGA+GGG 0.568995 8_2:+11014863 Msa1233890:intron
GAACCAACGGGGAATGATGA+CGG 0.569600 8_2:+11016183 Msa1233890:CDS
AATCAGGTTCTTGATGAGAT+CGG 0.569717 8_2:+11015671 Msa1233890:CDS
ACTTAAATCTACTCAAGCGA+TGG 0.571897 8_2:+11015454 Msa1233890:CDS
GAAGATGGAACTTGTTTCTG+AGG 0.576457 8_2:+11015580 Msa1233890:CDS
GTTCTTTGCCGCTGGCGCAG+CGG 0.580347 8_2:-11016145 None:intergenic
CAATTTGTTAGGGTGCTGTG+AGG 0.590012 8_2:+11014862 Msa1233890:intron
GGCAGTAGAAAGACTCCCGC+AGG 0.602338 8_2:+11013836 Msa1233890:CDS
GGAATTGCACAGTAGAGCAT+AGG 0.604816 8_2:+11013783 Msa1233890:five_prime_UTR
TAAATCTACTCAAGCGATGG+GGG 0.615627 8_2:+11015457 Msa1233890:CDS
ATTAAGAAGAATGCCAAACA+AGG 0.625704 8_2:+11014170 Msa1233890:CDS
TAGATGATGATCTACAGGCT+AGG 0.626372 8_2:+11016211 Msa1233890:CDS
GATATTGAAAGGGAAAGACA+AGG 0.640038 8_2:+11014113 Msa1233890:CDS
TTAAATCTACTCAAGCGATG+GGG 0.653699 8_2:+11015456 Msa1233890:CDS
CGGAATTGATATGAACTCTG+AGG 0.673136 8_2:+11015691 Msa1233890:CDS
CCAACGGGGAATGATGACGG+TGG 0.714560 8_2:+11016186 Msa1233890:CDS
GATGCGTAGGAATATTGGAG+AGG 0.716699 8_2:+11016256 Msa1233890:exon
TTGCTCAGGCCGAACCAACG+GGG 0.742469 8_2:+11016172 Msa1233890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAATAATTTAATAC+TGG + chr8_2:11013942-11013961 Msa1233890:intron 10.0%
!! AAAAACAATAATTTAATACT+GGG + chr8_2:11013943-11013962 Msa1233890:intron 10.0%
!!! AAAATTGATAATTACTTTTA+GGG + chr8_2:11014674-11014693 Msa1233890:intron 10.0%
!!! TTTAAAATTGATATATATCA+TGG - chr8_2:11016415-11016434 None:intergenic 10.0%
!! TTCCTTAAATAAAAAACATT+AGG + chr8_2:11013676-11013695 Msa1233890:five_prime_UTR 15.0%
!!! AATTTTCACTTTTAATCAAA+TGG + chr8_2:11013869-11013888 Msa1233890:intron 15.0%
!!! ATTTTCACTTTTAATCAAAT+GGG + chr8_2:11013870-11013889 Msa1233890:intron 15.0%
!!! TTTTTGTATTATATTCGTTT+TGG + chr8_2:11014527-11014546 Msa1233890:intron 15.0%
!!! CAAAATTGATAATTACTTTT+AGG + chr8_2:11014673-11014692 Msa1233890:intron 15.0%
!!! CACCTAATGTTTTTTATTTA+AGG - chr8_2:11013681-11013700 None:intergenic 20.0%
!! CTTAAATAAAAAACATTAGG+TGG + chr8_2:11013679-11013698 Msa1233890:five_prime_UTR 20.0%
!! GATTAATTATAACCTTAGTT+TGG + chr8_2:11013704-11013723 Msa1233890:five_prime_UTR 20.0%
!!! TTTTATTTGCTTTTCTAGTT+TGG + chr8_2:11013971-11013990 Msa1233890:intron 20.0%
!!! AATTGAGTTTTTTGGTTAAT+GGG + chr8_2:11014016-11014035 Msa1233890:intron 20.0%
!!! TTAGTTGTATATTTTGTTGT+AGG + chr8_2:11014260-11014279 Msa1233890:intron 20.0%
!! AAACAAAAAACACTAATTGT+AGG + chr8_2:11014483-11014502 Msa1233890:intron 20.0%
!! AACAAAAAACACTAATTGTA+GGG + chr8_2:11014484-11014503 Msa1233890:intron 20.0%
!!! ATAATTACTTTTAGGGTTAT+AGG + chr8_2:11014681-11014700 Msa1233890:intron 20.0%
!!! ATTGTGGTTTTTAATATAGT+AGG + chr8_2:11014774-11014793 Msa1233890:intron 20.0%
!!! TTGTGGTTTTTAATATAGTA+GGG + chr8_2:11014775-11014794 Msa1233890:intron 20.0%
!!! AATAATAAACTAGTCCTTTT+TGG + chr8_2:11015755-11015774 Msa1233890:intron 20.0%
!! AATAAGCTAAAAACATCTTA+AGG + chr8_2:11015926-11015945 Msa1233890:intron 20.0%
!!! AAATGGGTGATTTTTAACTT+AGG + chr8_2:11013650-11013669 Msa1233890:five_prime_UTR 25.0%
! ATGAACTATAATCCAAACTA+AGG - chr8_2:11013719-11013738 None:intergenic 25.0%
!!! AATTCCAATTTTGTTTGCAA+TGG - chr8_2:11013769-11013788 None:intergenic 25.0%
!! TTCAATATGAGTTTTCTGTT+CGG + chr8_2:11013815-11013834 Msa1233890:exon 25.0%
! AAAATTTGAAGAATTACCTG+CGG - chr8_2:11013855-11013874 None:intergenic 25.0%
! GAAAAATTGTGACTTTGATT+AGG + chr8_2:11013993-11014012 Msa1233890:intron 25.0%
!!! TGATTAGGAATTGAGTTTTT+TGG + chr8_2:11014008-11014027 Msa1233890:intron 25.0%
!!! GAATTGAGTTTTTTGGTTAA+TGG + chr8_2:11014015-11014034 Msa1233890:intron 25.0%
! AGTCTATTAGAGATATTGAA+AGG + chr8_2:11014102-11014121 Msa1233890:CDS 25.0%
! GTCTATTAGAGATATTGAAA+GGG + chr8_2:11014103-11014122 Msa1233890:CDS 25.0%
! AACTAAGTGCAATAGAAAAA+TGG - chr8_2:11014246-11014265 None:intergenic 25.0%
! CAAAAAACACAATAATTGCA+GGG - chr8_2:11014303-11014322 None:intergenic 25.0%
!! CAATAGTTTTTGAATTTGCA+AGG - chr8_2:11014363-11014382 None:intergenic 25.0%
! AGTCTGTAACATTACTTAAT+CGG - chr8_2:11014430-11014449 None:intergenic 25.0%
!!! CAGTTGTTTTTTAATTTGCA+CGG + chr8_2:11014455-11014474 Msa1233890:intron 25.0%
! TCAGTTTCAATATTCACTAA+CGG + chr8_2:11014581-11014600 Msa1233890:intron 25.0%
! GTACACAAGTATAGATTATT+TGG + chr8_2:11014707-11014726 Msa1233890:intron 25.0%
!!! AGTTTGGTTTCAATTTGTTA+GGG + chr8_2:11014852-11014871 Msa1233890:intron 25.0%
! ATTCAGTTGTTTATCCAAAA+AGG - chr8_2:11015772-11015791 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG - chr8_2:11016007-11016026 None:intergenic 25.0%
! TCAAATAAGTCAATTCAAAC+AGG + chr8_2:11016017-11016036 Msa1233890:intron 25.0%
!!! TTTAGTCACGTTTTATTTTC+AGG + chr8_2:11016329-11016348 Msa1233890:three_prime_UTR 25.0%
AAATTTGAAGAATTACCTGC+GGG - chr8_2:11013854-11013873 None:intergenic 30.0%
!! TTTTGGTTAATGGGTAGTTT+TGG + chr8_2:11014025-11014044 Msa1233890:intron 30.0%
! TTTTGTTAACAGAGCTTTTG+AGG + chr8_2:11014057-11014076 Msa1233890:intron 30.0%
! TTTGTTAACAGAGCTTTTGA+GGG + chr8_2:11014058-11014077 Msa1233890:intron 30.0%
!! AGCTTTTGAGGGAAAATAAA+AGG + chr8_2:11014069-11014088 Msa1233890:CDS 30.0%
ATTAAGAAGAATGCCAAACA+AGG + chr8_2:11014170-11014189 Msa1233890:CDS 30.0%
AAATACCATTTGTCCTTGTT+TGG - chr8_2:11014186-11014205 None:intergenic 30.0%
CCAAAAAACACAATAATTGC+AGG - chr8_2:11014304-11014323 None:intergenic 30.0%
!!! CCTGCAATTATTGTGTTTTT+TGG + chr8_2:11014301-11014320 Msa1233890:intron 30.0%
CTCAAACAAAAGAACTTACA+CGG - chr8_2:11014334-11014353 None:intergenic 30.0%
!! TGTTTTTACTACGTCATATG+CGG + chr8_2:11014381-11014400 Msa1233890:intron 30.0%
GTCTGTAACATTACTTAATC+GGG - chr8_2:11014429-11014448 None:intergenic 30.0%
!! TGTAAGGAACTGTTTTGTTA+AGG + chr8_2:11014621-11014640 Msa1233890:intron 30.0%
!! GTAAGGAACTGTTTTGTTAA+GGG + chr8_2:11014622-11014641 Msa1233890:intron 30.0%
TGAGAAGTTTATTGCTTTGA+AGG + chr8_2:11014751-11014770 Msa1233890:intron 30.0%
!! TTTATTGCTTTGAAGGATTG+TGG + chr8_2:11014758-11014777 Msa1233890:intron 30.0%
GAACAGGTATGTAATATGTT+TGG + chr8_2:11014809-11014828 Msa1233890:intron 30.0%
! GAGTTTGGTTTCAATTTGTT+AGG + chr8_2:11014851-11014870 Msa1233890:intron 30.0%
AACTTATCTGCTAAAATCCT+AGG - chr8_2:11015056-11015075 None:intergenic 30.0%
! TGAGCATGAAAGTATATACA+AGG - chr8_2:11015305-11015324 None:intergenic 30.0%
TTTCATGCTCATTCATACTA+CGG + chr8_2:11015314-11015333 Msa1233890:intron 30.0%
AAGTGTCTACAATTAATCTC+AGG - chr8_2:11015438-11015457 None:intergenic 30.0%
AAAGGAGTTACTAAAGCAAT+GGG + chr8_2:11015488-11015507 Msa1233890:CDS 30.0%
TGCATTATCTTCTGTAAAGA+AGG - chr8_2:11015539-11015558 None:intergenic 30.0%
AGATAATGCAAGAGTTTGAA+AGG + chr8_2:11015549-11015568 Msa1233890:CDS 30.0%
!! CTTATTTTCATAAGCTCTCT+AGG - chr8_2:11015912-11015931 None:intergenic 30.0%
!!! TCACGTTTTATTTTCAGGTT+TGG + chr8_2:11016334-11016353 Msa1233890:three_prime_UTR 30.0%
GATATTGAAAGGGAAAGACA+AGG + chr8_2:11014113-11014132 Msa1233890:CDS 35.0%
CCACTAGTAATGAAAGAAGA+AGG - chr8_2:11014218-11014237 None:intergenic 35.0%
CCTTCTTCTTTCATTACTAG+TGG + chr8_2:11014215-11014234 Msa1233890:intron 35.0%
GCTACATGGCGTATTATATT+GGG - chr8_2:11014407-11014426 None:intergenic 35.0%
GTTACTGAGCAGAATTTGTA+AGG + chr8_2:11014605-11014624 Msa1233890:intron 35.0%
!! TAGGGTGTTGTTATTTGAAC+AGG + chr8_2:11014793-11014812 Msa1233890:intron 35.0%
GGTATGTAATATGTTTGGTC+TGG + chr8_2:11014814-11014833 Msa1233890:intron 35.0%
GTTTGAGTAGTTTCTGAGTT+TGG + chr8_2:11014836-11014855 Msa1233890:intron 35.0%
AAGCTTAAATCGCAACTTCA+AGG + chr8_2:11014936-11014955 Msa1233890:CDS 35.0%
!! GGATTTTAGCAGATAAGTTG+AGG + chr8_2:11015057-11015076 Msa1233890:intron 35.0%
CTCATTATGTATCTGCAATG+AGG - chr8_2:11015282-11015301 None:intergenic 35.0%
ACTTAAATCTACTCAAGCGA+TGG + chr8_2:11015454-11015473 Msa1233890:CDS 35.0%
CTTAAATCTACTCAAGCGAT+GGG + chr8_2:11015455-11015474 Msa1233890:CDS 35.0%
TTAAATCTACTCAAGCGATG+GGG + chr8_2:11015456-11015475 Msa1233890:CDS 35.0%
GAAAGGAGTTACTAAAGCAA+TGG + chr8_2:11015487-11015506 Msa1233890:CDS 35.0%
AAGCAATGGGTCAAATGAAT+AGG + chr8_2:11015501-11015520 Msa1233890:CDS 35.0%
!! GAACTTGTTTCTGAGGTAAT+GGG + chr8_2:11015587-11015606 Msa1233890:CDS 35.0%
!! GCAATTGATGATGCTTTAGA+AGG + chr8_2:11015614-11015633 Msa1233890:CDS 35.0%
TTTAGAAGGTGATGAAGAAG+AGG + chr8_2:11015628-11015647 Msa1233890:CDS 35.0%
AACCTGATTCACAAGATCTT+CGG - chr8_2:11015660-11015679 None:intergenic 35.0%
AATCAGGTTCTTGATGAGAT+CGG + chr8_2:11015671-11015690 Msa1233890:CDS 35.0%
CAACTGAATTAAGCGCTTAT+AGG + chr8_2:11015783-11015802 Msa1233890:intron 35.0%
ACATCTTAAGGACATGTCAT+AGG + chr8_2:11015938-11015957 Msa1233890:intron 35.0%
ACAACCTATGATAAACGCTA+GGG - chr8_2:11016064-11016083 None:intergenic 35.0%
AACAACCTATGATAAACGCT+AGG - chr8_2:11016065-11016084 None:intergenic 35.0%
TGGAATAGATGATGATCTAC+AGG + chr8_2:11016206-11016225 Msa1233890:CDS 35.0%
AGGCTAGGTTAGATAATCTA+AGG + chr8_2:11016226-11016245 Msa1233890:CDS 35.0%
AATGTGATGCGTAGGAATAT+TGG + chr8_2:11016251-11016270 Msa1233890:exon 35.0%
AGCGCCATTGCAAACAAAAT+TGG + chr8_2:11013762-11013781 Msa1233890:five_prime_UTR 40.0%
GAATGCCAAACAAGGACAAA+TGG + chr8_2:11014178-11014197 Msa1233890:CDS 40.0%
GGCTACATGGCGTATTATAT+TGG - chr8_2:11014408-11014427 None:intergenic 40.0%
CATTACTTAATCGGGCTACA+TGG - chr8_2:11014421-11014440 None:intergenic 40.0%
!! AATTTGTTAGGGTGCTGTGA+GGG + chr8_2:11014863-11014882 Msa1233890:intron 40.0%
!! AGGTGTTGCTTTGAGAATTC+AGG + chr8_2:11014956-11014975 Msa1233890:CDS 40.0%
TTCATGCTTATTGTGCTCCT+AGG + chr8_2:11015036-11015055 Msa1233890:intron 40.0%
TGACAAGTATCCGACATTTG+TGG + chr8_2:11015150-11015169 Msa1233890:intron 40.0%
GACAAGTATCCGACATTTGT+GGG + chr8_2:11015151-11015170 Msa1233890:intron 40.0%
TAAATCTACTCAAGCGATGG+GGG + chr8_2:11015457-11015476 Msa1233890:CDS 40.0%
TGAAAGGCAGAATGAGAAGA+TGG + chr8_2:11015565-11015584 Msa1233890:CDS 40.0%
!! GAAGATGGAACTTGTTTCTG+AGG + chr8_2:11015580-11015599 Msa1233890:CDS 40.0%
!! GGAACTTGTTTCTGAGGTAA+TGG + chr8_2:11015586-11015605 Msa1233890:CDS 40.0%
CGGAATTGATATGAACTCTG+AGG + chr8_2:11015691-11015710 Msa1233890:CDS 40.0%
CAACCTATGATAAACGCTAG+GGG - chr8_2:11016063-11016082 None:intergenic 40.0%
TAGATGATGATCTACAGGCT+AGG + chr8_2:11016211-11016230 Msa1233890:CDS 40.0%
CTAAGGAAAATGTGATGCGT+AGG + chr8_2:11016243-11016262 Msa1233890:exon 40.0%
GGAATTGCACAGTAGAGCAT+AGG + chr8_2:11013783-11013802 Msa1233890:five_prime_UTR 45.0%
!! CAATTTGTTAGGGTGCTGTG+AGG + chr8_2:11014862-11014881 Msa1233890:intron 45.0%
TATCCGACATTTGTGGGCAT+TGG + chr8_2:11015157-11015176 Msa1233890:intron 45.0%
ATCCGACATTTGTGGGCATT+GGG + chr8_2:11015158-11015177 Msa1233890:intron 45.0%
ATGTATCTGCAATGAGGCAC+CGG - chr8_2:11015276-11015295 None:intergenic 45.0%
GACCGAAGATCTTGTGAATC+AGG + chr8_2:11015655-11015674 Msa1233890:CDS 45.0%
CTACTGGCATAAGCACTTGT+GGG - chr8_2:11015991-11016010 None:intergenic 45.0%
TCTACTGGCATAAGCACTTG+TGG - chr8_2:11015992-11016011 None:intergenic 45.0%
GTTCCCCTAGCGTTTATCAT+AGG + chr8_2:11016057-11016076 Msa1233890:intron 45.0%
GATGCGTAGGAATATTGGAG+AGG + chr8_2:11016256-11016275 Msa1233890:exon 45.0%
!! ATTAAAAATTATAAATTAAC+AGG - chr8_2:11015366-11015385 None:intergenic 5.0%
!! TTAGGGTGCTGTGAGGGTTA+TGG + chr8_2:11014869-11014888 Msa1233890:intron 50.0%
TGCTGTGAGGGTTATGGCTA+AGG + chr8_2:11014875-11014894 Msa1233890:CDS 50.0%
TGCCCAATGCCCACAAATGT+CGG - chr8_2:11015163-11015182 None:intergenic 50.0%
TCTGGTATCCATCTCTCTGC+CGG + chr8_2:11015254-11015273 Msa1233890:intron 50.0%
! GTCATCATTCCCCGTTGGTT+CGG - chr8_2:11016184-11016203 None:intergenic 50.0%
GAACCAACGGGGAATGATGA+CGG + chr8_2:11016183-11016202 Msa1233890:CDS 50.0%
! CGACGTGTAAGTGTCGTGTC+TGG + chr8_2:11015236-11015255 Msa1233890:intron 55.0%
GGCAAAGAACAGGGTTGCTC+AGG + chr8_2:11016158-11016177 Msa1233890:CDS 55.0%
GGCAGTAGAAAGACTCCCGC+AGG + chr8_2:11013836-11013855 Msa1233890:CDS 60.0%
!! ATGAGGCACCGGCAGAGAGA+TGG - chr8_2:11015265-11015284 None:intergenic 60.0%
GCGATGGGGGACGCAATGAA+AGG + chr8_2:11015470-11015489 Msa1233890:CDS 60.0%
TGCGCCAGCGGCAAAGAACA+GGG + chr8_2:11016149-11016168 Msa1233890:CDS 60.0%
GCAACCCTGTTCTTTGCCGC+TGG - chr8_2:11016156-11016175 None:intergenic 60.0%
GGTTGCTCAGGCCGAACCAA+CGG + chr8_2:11016170-11016189 Msa1233890:CDS 60.0%
GTTGCTCAGGCCGAACCAAC+GGG + chr8_2:11016171-11016190 Msa1233890:CDS 60.0%
TTGCTCAGGCCGAACCAACG+GGG + chr8_2:11016172-11016191 Msa1233890:CDS 60.0%
CCACCGTCATCATTCCCCGT+TGG - chr8_2:11016189-11016208 None:intergenic 60.0%
!! CCAACGGGGAATGATGACGG+TGG + chr8_2:11016186-11016205 Msa1233890:CDS 60.0%
!! GCAGCGGCTGAGGTTGATGC+AGG - chr8_2:11016132-11016151 None:intergenic 65.0%
GTTCTTTGCCGCTGGCGCAG+CGG - chr8_2:11016148-11016167 None:intergenic 65.0%
CTGCGCCAGCGGCAAAGAAC+AGG + chr8_2:11016148-11016167 Msa1233890:CDS 65.0%
AACCTCAGCCGCTGCGCCAG+CGG + chr8_2:11016137-11016156 Msa1233890:CDS 70.0%
! TGCCGCTGGCGCAGCGGCTG+AGG - chr8_2:11016142-11016161 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 11013636 11016472 11013636 ID=Msa1233890;Name=Msa1233890
chr8_2 mRNA 11013636 11016472 11013636 ID=Msa1233890-mRNA-1;Parent=Msa1233890;Name=Msa1233890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=185|1|1|1|1|1|5|215|224
chr8_2 exon 11013636 11013857 11013636 ID=Msa1233890-mRNA-1:exon:4262;Parent=Msa1233890-mRNA-1
chr8_2 exon 11014069 11014199 11014069 ID=Msa1233890-mRNA-1:exon:4263;Parent=Msa1233890-mRNA-1
chr8_2 exon 11014873 11014977 11014873 ID=Msa1233890-mRNA-1:exon:4264;Parent=Msa1233890-mRNA-1
chr8_2 exon 11015452 11015712 11015452 ID=Msa1233890-mRNA-1:exon:4265;Parent=Msa1233890-mRNA-1
chr8_2 exon 11016117 11016472 11016117 ID=Msa1233890-mRNA-1:exon:4266;Parent=Msa1233890-mRNA-1
chr8_2 five_prime_UTR 11013636 11013820 11013636 ID=Msa1233890-mRNA-1:five_prime_utr;Parent=Msa1233890-mRNA-1
chr8_2 CDS 11013821 11013857 11013821 ID=Msa1233890-mRNA-1:cds;Parent=Msa1233890-mRNA-1
chr8_2 CDS 11014069 11014199 11014069 ID=Msa1233890-mRNA-1:cds;Parent=Msa1233890-mRNA-1
chr8_2 CDS 11014873 11014977 11014873 ID=Msa1233890-mRNA-1:cds;Parent=Msa1233890-mRNA-1
chr8_2 CDS 11015452 11015712 11015452 ID=Msa1233890-mRNA-1:cds;Parent=Msa1233890-mRNA-1
chr8_2 CDS 11016117 11016257 11016117 ID=Msa1233890-mRNA-1:cds;Parent=Msa1233890-mRNA-1
chr8_2 three_prime_UTR 11016258 11016472 11016258 ID=Msa1233890-mRNA-1:three_prime_utr;Parent=Msa1233890-mRNA-1
Gene Sequence

>Msa1233890

ATGAGTTTTCTGTTCGGCAGTAGAAAGACTCCCGCAGAGCTTTTGAGGGAAAATAAAAGGATGTTAGATAAGTCTATTAGAGATATTGAAAGGGAAAGACAAGGATTGCAGTCTCAAGAAAAGAAATTGATTGTAGAGATTAAGAAGAATGCCAAACAAGGACAAATGGGTGCTGTGAGGGTTATGGCTAAGGATCTTATCAGAACTCGACATCAGATTGAAAAGTTTTACAAGCTTAAATCGCAACTTCAAGGTGTTGCTTTGAGAATTCAGACACTTAAATCTACTCAAGCGATGGGGGACGCAATGAAAGGAGTTACTAAAGCAATGGGTCAAATGAATAGGCAGATGAATTTGCCTTCTTTACAGAAGATAATGCAAGAGTTTGAAAGGCAGAATGAGAAGATGGAACTTGTTTCTGAGGTAATGGGAGATGCAATTGATGATGCTTTAGAAGGTGATGAAGAAGAGGAAGAGACCGAAGATCTTGTGAATCAGGTTCTTGATGAGATCGGAATTGATATGAACTCTGAGCTTTTGAATGCACCTGCATCAACCTCAGCCGCTGCGCCAGCGGCAAAGAACAGGGTTGCTCAGGCCGAACCAACGGGGAATGATGACGGTGGAATAGATGATGATCTACAGGCTAGGTTAGATAATCTAAGGAAAATGTGA

Protein sequence

>Msa1233890

MSFLFGSRKTPAELLRENKRMLDKSIRDIERERQGLQSQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGDAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDMNSELLNAPASTSAAAPAAKNRVAQAEPTGNDDGGIDDDLQARLDNLRKM*