Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964020 | sp|Q43785|GLNA3_MEDSA | 99.157 | 356 | 3 | 0 | 1 | 356 | 1 | 356 | 0.0 | 727 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964020 | O04998 | 98.876 | 356 | 4 | 0 | 1 | 356 | 1 | 356 | 0.0 | 725 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0964020 | 0.853353 | 2.528275e-61 | -8.615850e-47 |
| Msa0063940 | Msa0964020 | 0.800942 | 1.137616e-48 | -8.615850e-47 |
| Msa0091730 | Msa0964020 | 0.814008 | 1.916749e-51 | -8.615850e-47 |
| Msa0098240 | Msa0964020 | 0.816017 | 6.867215e-52 | -8.615850e-47 |
| Msa0101530 | Msa0964020 | 0.814488 | 1.501664e-51 | -8.615850e-47 |
| Msa0603310 | Msa0964020 | 0.813572 | 2.392081e-51 | -8.615850e-47 |
| Msa0610690 | Msa0964020 | 0.812269 | 4.615245e-51 | -8.615850e-47 |
| Msa0667030 | Msa0964020 | 0.813706 | 2.234445e-51 | -8.615850e-47 |
| Msa0686830 | Msa0964020 | 0.802715 | 4.918382e-49 | -8.615850e-47 |
| Msa0712860 | Msa0964020 | 0.835589 | 1.536543e-56 | -8.615850e-47 |
| Msa0736920 | Msa0964020 | 0.804230 | 2.386663e-49 | -8.615850e-47 |
| Msa0742370 | Msa0964020 | -0.809707 | 1.656134e-50 | -8.615850e-47 |
| Msa0800480 | Msa0964020 | 0.846132 | 2.631407e-59 | -8.615850e-47 |
| Msa0831740 | Msa0964020 | 0.815774 | 7.780573e-52 | -8.615850e-47 |
| Msa0122530 | Msa0964020 | 0.823835 | 1.118453e-53 | -8.615850e-47 |
| Msa0197170 | Msa0964020 | 0.800793 | 1.219953e-48 | -8.615850e-47 |
| Msa0226260 | Msa0964020 | 0.819278 | 1.263072e-52 | -8.615850e-47 |
| Msa0384590 | Msa0964020 | 0.814515 | 1.481473e-51 | -8.615850e-47 |
| Msa0434660 | Msa0964020 | 0.803450 | 3.465280e-49 | -8.615850e-47 |
| Msa0261460 | Msa0964020 | 0.812746 | 3.631155e-51 | -8.615850e-47 |
| Msa0261480 | Msa0964020 | 0.830482 | 2.864449e-55 | -8.615850e-47 |
| Msa0304980 | Msa0964020 | 0.802735 | 4.872020e-49 | -8.615850e-47 |
| Msa0522540 | Msa0964020 | 0.810678 | 1.022728e-50 | -8.615850e-47 |
| Msa0532230 | Msa0964020 | 0.812085 | 5.063219e-51 | -8.615850e-47 |
| Msa0535400 | Msa0964020 | 0.840802 | 6.981267e-58 | -8.615850e-47 |
| Msa0566940 | Msa0964020 | -0.805059 | 1.602758e-49 | -8.615850e-47 |
| Msa0579080 | Msa0964020 | 0.814859 | 1.243291e-51 | -8.615850e-47 |
| Msa0579160 | Msa0964020 | 0.823847 | 1.110877e-53 | -8.615850e-47 |
| Msa0579220 | Msa0964020 | 0.824944 | 6.132655e-54 | -8.615850e-47 |
| Msa0862480 | Msa0964020 | -0.808251 | 3.394143e-50 | -8.615850e-47 |
| Msa0921860 | Msa0964020 | 0.853062 | 3.063303e-61 | -8.615850e-47 |
| Msa0928180 | Msa0964020 | 0.821906 | 3.146733e-53 | -8.615850e-47 |
| Msa0940910 | Msa0964020 | 0.820249 | 7.578599e-53 | -8.615850e-47 |
| Msa0958830 | Msa0964020 | 0.839881 | 1.215067e-57 | -8.615850e-47 |
| Msa0964020 | Msa0993190 | 0.821207 | 4.565004e-53 | -8.615850e-47 |
| Msa0964020 | Msa0994360 | 0.814702 | 1.346419e-51 | -8.615850e-47 |
| Msa0964020 | Msa1026970 | 0.800813 | 1.208457e-48 | -8.615850e-47 |
| Msa0964020 | Msa1028420 | 0.804973 | 1.670704e-49 | -8.615850e-47 |
| Msa0964020 | Msa1080130 | 0.805560 | 1.258272e-49 | -8.615850e-47 |
| Msa0964020 | Msa1094810 | 0.813434 | 2.564406e-51 | -8.615850e-47 |
| Msa0964020 | Msa1111900 | 0.841240 | 5.356105e-58 | -8.615850e-47 |
| Msa0964020 | Msa1133760 | 0.828538 | 8.506099e-55 | -8.615850e-47 |
| Msa0964020 | Msa1154310 | 0.802207 | 6.258492e-49 | -8.615850e-47 |
| Msa0964020 | Msa1154320 | 0.814088 | 1.841027e-51 | -8.615850e-47 |
| Msa0964020 | Msa1167310 | 0.803273 | 3.771310e-49 | -8.615850e-47 |
| Msa0964020 | Msa1184230 | 0.836399 | 9.573572e-57 | -8.615850e-47 |
| Msa0964020 | Msa1184680 | 0.844546 | 7.071236e-59 | -8.615850e-47 |
| Msa0964020 | Msa1197720 | 0.812793 | 3.544864e-51 | -8.615850e-47 |
| Msa0964020 | Msa1207920 | -0.803274 | 3.769457e-49 | -8.615850e-47 |
| Msa0964020 | Msa1212830 | 0.835554 | 1.568435e-56 | -8.615850e-47 |
| Msa0964020 | Msa1213040 | 0.814655 | 1.379683e-51 | -8.615850e-47 |
| Msa0964020 | Msa1238600 | 0.807316 | 5.365657e-50 | -8.615850e-47 |
| Msa0964020 | Msa1248060 | 0.800542 | 1.372392e-48 | -8.615850e-47 |
| Msa0964020 | Msa1251410 | 0.819869 | 9.260795e-53 | -8.615850e-47 |
| Msa0964020 | Msa1260220 | 0.813244 | 2.823561e-51 | -8.615850e-47 |
| Msa0964020 | Msa1323070 | 0.801632 | 8.216460e-49 | -8.615850e-47 |
| Msa0964020 | Msa1331570 | -0.821626 | 3.654050e-53 | -8.615850e-47 |
| Msa0964020 | Msa1343600 | 0.803549 | 3.306753e-49 | -8.615850e-47 |
| Msa0964020 | Msa1348290 | 0.801055 | 1.078527e-48 | -8.615850e-47 |
| Msa0964020 | Msa1372000 | 0.821449 | 4.014139e-53 | -8.615850e-47 |
| Msa0964020 | Msa1384700 | 0.825467 | 4.614011e-54 | -8.615850e-47 |
| Msa0964020 | Msa1422860 | 0.805611 | 1.227770e-49 | -8.615850e-47 |
| Msa0964020 | Msa1434300 | 0.830011 | 3.733900e-55 | -8.615850e-47 |
| Msa0964020 | Msa1439250 | 0.803539 | 3.321682e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964020 | MtrunA17_Chr6g0479141 | 98.876 | 356 | 4 | 0 | 1 | 356 | 1 | 356 | 0.0 | 725 |
| Msa0964020 | MtrunA17_Chr3g0110261 | 89.607 | 356 | 37 | 0 | 1 | 356 | 1 | 356 | 0.0 | 677 |
| Msa0964020 | MtrunA17_Chr5g0434471 | 85.070 | 355 | 53 | 0 | 2 | 356 | 3 | 357 | 0.0 | 644 |
| Msa0964020 | MtrunA17_Chr2g0287211 | 78.652 | 356 | 76 | 0 | 1 | 356 | 57 | 412 | 0.0 | 612 |
| Msa0964020 | MtrunA17_Chr2g0287181 | 75.000 | 356 | 89 | 0 | 1 | 356 | 57 | 412 | 0.0 | 592 |
| Msa0964020 | MtrunA17_Chr8g0364341 | 72.727 | 55 | 15 | 0 | 252 | 306 | 9 | 63 | 1.79e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964020 | AT1G66200.1 | 90.449 | 356 | 34 | 0 | 1 | 356 | 1 | 356 | 0.0 | 678 |
| Msa0964020 | AT5G37600.1 | 89.045 | 356 | 39 | 0 | 1 | 356 | 1 | 356 | 0.0 | 676 |
| Msa0964020 | AT1G66200.3 | 88.219 | 365 | 34 | 1 | 1 | 356 | 1 | 365 | 0.0 | 670 |
| Msa0964020 | AT3G17820.1 | 86.402 | 353 | 48 | 0 | 1 | 353 | 1 | 353 | 0.0 | 658 |
| Msa0964020 | AT5G16570.1 | 84.831 | 356 | 54 | 0 | 1 | 356 | 1 | 356 | 0.0 | 654 |
| Msa0964020 | AT1G48470.1 | 81.953 | 338 | 61 | 0 | 16 | 353 | 16 | 353 | 0.0 | 607 |
| Msa0964020 | AT5G35630.3 | 78.187 | 353 | 77 | 0 | 4 | 356 | 62 | 414 | 0.0 | 603 |
| Msa0964020 | AT5G35630.2 | 78.187 | 353 | 77 | 0 | 4 | 356 | 62 | 414 | 0.0 | 603 |
| Msa0964020 | AT5G35630.1 | 78.187 | 353 | 77 | 0 | 4 | 356 | 62 | 414 | 0.0 | 603 |
| Msa0964020 | AT1G66200.2 | 90.079 | 252 | 25 | 0 | 1 | 252 | 1 | 252 | 2.75e-172 | 480 |
| Msa0964020 | AT5G16570.2 | 81.667 | 240 | 44 | 0 | 1 | 240 | 1 | 240 | 9.53e-153 | 430 |
Find 111 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTGCTGGAGATGAAATT+TGG | 0.150793 | 6_3:-89978809 | Msa0964020:CDS |
| AAGCATTTAGTCCATGTATT+TGG | 0.179205 | 6_3:-89977053 | Msa0964020:three_prime_UTR |
| CAACCACTTGTCTTTGGATT+TGG | 0.216158 | 6_3:-89977186 | Msa0964020:three_prime_UTR |
| ATATTGTTGCCTTGTCTAAA+TGG | 0.224649 | 6_3:+89980762 | None:intergenic |
| ACCCTTCAAAACTTCCTAAA+TGG | 0.243549 | 6_3:-89980986 | Msa0964020:CDS |
| GATCCATCATAGTTCCATTT+AGG | 0.252717 | 6_3:+89980972 | None:intergenic |
| ATTCAATGTGTTGCTTCTTT+AGG | 0.254101 | 6_3:-89976935 | Msa0964020:three_prime_UTR |
| TTACCCTGGCTTTGCTTCTA+AGG | 0.260345 | 6_3:+89981149 | None:intergenic |
| TGGCCTATTGGTGGCTTTCC+AGG | 0.261567 | 6_3:-89980093 | Msa0964020:CDS |
| CAGAAGGCCTTCTTCTAATA+TGG | 0.269659 | 6_3:-89977270 | Msa0964020:CDS |
| ATCAGGGTGACTGAAAATTT+TGG | 0.293766 | 6_3:+89980528 | None:intergenic |
| TATTGCAGAAAGATACTAAT+TGG | 0.302912 | 6_3:-89980125 | Msa0964020:CDS |
| GTTGGGAGTGGTTCACCAGC+TGG | 0.311962 | 6_3:+89980571 | None:intergenic |
| AAGGAGCACATTGCTGCTTA+TGG | 0.321020 | 6_3:-89977950 | Msa0964020:CDS |
| AAGTCACAACCACTTGTCTT+TGG | 0.327861 | 6_3:-89977192 | Msa0964020:three_prime_UTR |
| CATTGTGCCTCTTGTTTGTT+GGG | 0.328802 | 6_3:+89980554 | None:intergenic |
| GCACCAATCCCACAATAATA+TGG | 0.333506 | 6_3:+89979722 | None:intergenic |
| GACAAGTGGTTGTGACTTCA+TGG | 0.342365 | 6_3:+89977197 | None:intergenic |
| TTATACAGGGTTGGTGGATC+TGG | 0.345573 | 6_3:-89981178 | Msa0964020:intron |
| GACTTCATGGTTTCCATAGA+AGG | 0.346715 | 6_3:+89977210 | None:intergenic |
| TTGCTGAAACTACCCTTCTA+TGG | 0.348042 | 6_3:-89977223 | Msa0964020:CDS |
| AAGGGCATTCTAACCGGAAT+TGG | 0.349045 | 6_3:+89978601 | None:intergenic |
| ATTCTAACCGGAATTGGCTT+AGG | 0.356734 | 6_3:+89978607 | None:intergenic |
| TTCTGCTGGAGATGAAATTT+GGG | 0.364580 | 6_3:-89978808 | Msa0964020:CDS |
| GCATTGTGCCTCTTGTTTGT+TGG | 0.366714 | 6_3:+89980553 | None:intergenic |
| ATTGTTGTTACTAGGGTGAT+TGG | 0.368030 | 6_3:-89978465 | Msa0964020:intron |
| CCTTCTGTTGGTATTTCTGC+TGG | 0.371824 | 6_3:-89978822 | Msa0964020:CDS |
| TATGCTGGCATTAACATTAG+TGG | 0.389669 | 6_3:-89979647 | Msa0964020:CDS |
| TTGGGAGTGGTTCACCAGCT+GGG | 0.397770 | 6_3:+89980572 | None:intergenic |
| CAAACCGTGGTGCCTCAGTT+AGG | 0.400634 | 6_3:-89977337 | Msa0964020:CDS |
| CAGAGGATTCTGAGAGATTG+AGG | 0.402405 | 6_3:+89981741 | None:intergenic |
| GGTACCTCAGCAGCAACATC+AGG | 0.435763 | 6_3:+89980511 | None:intergenic |
| TGCCTCTTGTTTGTTGGGAG+TGG | 0.442023 | 6_3:+89980559 | None:intergenic |
| AAAATTCATACTTGTGGTCC+TGG | 0.443867 | 6_3:+89980075 | None:intergenic |
| AACAGGGTCCATATTATTGT+GGG | 0.450127 | 6_3:-89979730 | Msa0964020:intron |
| CTTCCTAAATGGAACTATGA+TGG | 0.457898 | 6_3:-89980975 | Msa0964020:CDS |
| TACCAACAGAAGGGCCAACT+TGG | 0.457942 | 6_3:+89978832 | None:intergenic |
| TACAAAGCTTGTCTTTATGC+TGG | 0.462426 | 6_3:-89979662 | Msa0964020:CDS |
| CCACTAGGATGGCCTATTGG+TGG | 0.464713 | 6_3:-89980102 | Msa0964020:CDS |
| ATTTGACCCTAAGCCAATTC+CGG | 0.465261 | 6_3:-89978614 | Msa0964020:intron |
| GGTCCATATTATTGTGGGAT+TGG | 0.467497 | 6_3:-89979725 | Msa0964020:CDS |
| AGATTATTGCTGAATACATA+TGG | 0.469751 | 6_3:-89981715 | Msa0964020:intron |
| AAGGGTAGTTTCAGCAATCA+TGG | 0.474054 | 6_3:+89977229 | None:intergenic |
| ATCAATGGAGAGGTTATGCC+TGG | 0.479715 | 6_3:-89979623 | Msa0964020:CDS |
| TTCCAAGTTGGCCCTTCTGT+TGG | 0.480743 | 6_3:-89978834 | Msa0964020:CDS |
| GGTCCTGGAAAGCCACCAAT+AGG | 0.482434 | 6_3:+89980090 | None:intergenic |
| GGAAATGAGAGACGTCTCAC+TGG | 0.484871 | 6_3:-89977923 | Msa0964020:CDS |
| TGGCCACTAGGATGGCCTAT+TGG | 0.485125 | 6_3:-89980105 | Msa0964020:CDS |
| AAACCGTGGTGCCTCAGTTA+GGG | 0.490188 | 6_3:-89977336 | Msa0964020:CDS |
| TGGACAATTACTACTAATGA+AGG | 0.490264 | 6_3:+89977094 | None:intergenic |
| AAAGCTTAGATTGAGGCATA+AGG | 0.491860 | 6_3:-89977969 | Msa0964020:CDS |
| TTCTAACCGGAATTGGCTTA+GGG | 0.495438 | 6_3:+89978608 | None:intergenic |
| TGGACCTTAGAAGCAAAGCC+AGG | 0.496641 | 6_3:-89981153 | Msa0964020:CDS |
| CAGAGGATCACAGAGATAGC+TGG | 0.499269 | 6_3:-89978649 | Msa0964020:CDS |
| GAACAGGGTCCATATTATTG+TGG | 0.501632 | 6_3:-89979731 | Msa0964020:intron |
| ATTAACATTAGTGGCATCAA+TGG | 0.503694 | 6_3:-89979638 | Msa0964020:CDS |
| TTGCTTCTTTAGGAAAAGCT+TGG | 0.512863 | 6_3:-89976925 | Msa0964020:three_prime_UTR |
| CAGGGTTGGTGGATCTGGTA+TGG | 0.514346 | 6_3:-89981173 | Msa0964020:CDS |
| TTGAATAAACAGACTCTACC+TGG | 0.521461 | 6_3:-89981020 | Msa0964020:intron |
| ATCATGGAAGTGACCACATA+GGG | 0.521873 | 6_3:+89977245 | None:intergenic |
| CACATTGCTGCTTATGGAGA+AGG | 0.524445 | 6_3:-89977944 | Msa0964020:CDS |
| TGGAGAGGTTATGCCTGGCC+AGG | 0.526189 | 6_3:-89979618 | Msa0964020:intron |
| TAAAGAACTGACCCAAGAAA+AGG | 0.531510 | 6_3:+89977874 | None:intergenic |
| GAAGGGTCACTCACTGGACC+AGG | 0.538692 | 6_3:+89981002 | None:intergenic |
| TGGGAGTGGTTCACCAGCTG+GGG | 0.539124 | 6_3:+89980573 | None:intergenic |
| ATACTAATTGGCCACTAGGA+TGG | 0.540230 | 6_3:-89980113 | Msa0964020:CDS |
| TCAAGCACAAATCAAGCTCC+AGG | 0.541387 | 6_3:-89980951 | Msa0964020:CDS |
| TTTGTTAAGGTCAAAAGAGA+GGG | 0.550865 | 6_3:+89981879 | None:intergenic |
| TGTGATGTTTACACCCCAGC+TGG | 0.552836 | 6_3:-89980586 | Msa0964020:CDS |
| ATAACTTCACTATCTTGTCC+TGG | 0.553036 | 6_3:+89980933 | None:intergenic |
| ACAAAGTCAATGAGAGAGGA+TGG | 0.553563 | 6_3:-89978022 | Msa0964020:CDS |
| CTGGTGCTCACACAAACTAT+AGG | 0.555909 | 6_3:-89978435 | Msa0964020:intron |
| ACTTCATGGTTTCCATAGAA+GGG | 0.556533 | 6_3:+89977211 | None:intergenic |
| GGCTGCTCGTTACATTCTAG+AGG | 0.557853 | 6_3:-89978787 | Msa0964020:intron |
| AAGGTTACTTTGAGGACAGA+AGG | 0.559707 | 6_3:-89977286 | Msa0964020:CDS |
| ATTATTGTCATCCAAATACA+TGG | 0.561165 | 6_3:+89977042 | None:intergenic |
| TAGGGATCCATATTAGAAGA+AGG | 0.561293 | 6_3:+89977263 | None:intergenic |
| TTCTAATATGGATCCCTATG+TGG | 0.561605 | 6_3:-89977258 | Msa0964020:CDS |
| TCACCCTGATGTTGCTGCTG+AGG | 0.562513 | 6_3:-89980515 | Msa0964020:CDS |
| CGTGGTGCCTCAGTTAGGGT+TGG | 0.568100 | 6_3:-89977332 | Msa0964020:CDS |
| AAAGATACTAATTGGCCACT+AGG | 0.568445 | 6_3:-89980117 | Msa0964020:CDS |
| TGTTACTAGGGTGATTGGAA+TGG | 0.570387 | 6_3:-89978460 | Msa0964020:intron |
| GGATCCTTGAAAATAGCTTG+TGG | 0.575621 | 6_3:+89980783 | None:intergenic |
| ATTGGTGCTGATAAAGCATA+TGG | 0.577793 | 6_3:-89979707 | Msa0964020:CDS |
| ATTAGTAGTAATTGTCCAAG+TGG | 0.579620 | 6_3:-89977089 | Msa0964020:three_prime_UTR |
| TAGGGTGATTGGAATGGAGC+TGG | 0.587168 | 6_3:-89978454 | Msa0964020:CDS |
| GACATGATGATGAATAGTGA+AGG | 0.593951 | 6_3:+89981785 | None:intergenic |
| CCATTGAAAAGCTTAGATTG+AGG | 0.596334 | 6_3:-89977976 | Msa0964020:CDS |
| AGATGGCAAAGGTTACTTTG+AGG | 0.600333 | 6_3:-89977294 | Msa0964020:CDS |
| TTATAGTGGGAGTTCCAAGT+TGG | 0.601131 | 6_3:-89978846 | Msa0964020:intron |
| TTCAAGGATCCATTTAGACA+AGG | 0.602322 | 6_3:-89980771 | Msa0964020:CDS |
| ATGTTGCTGCTGAGGTACCA+TGG | 0.605031 | 6_3:-89980507 | Msa0964020:intron |
| CCAGCAGAAATACCAACAGA+AGG | 0.605255 | 6_3:+89978822 | None:intergenic |
| GATCACAGAGATAGCTGGAG+TGG | 0.613338 | 6_3:-89978644 | Msa0964020:CDS |
| AATCATGGAAGTGACCACAT+AGG | 0.616584 | 6_3:+89977244 | None:intergenic |
| CATTAGTGGCATCAATGGAG+AGG | 0.622524 | 6_3:-89979633 | Msa0964020:CDS |
| AGGCTATGAAATCATCAAGA+AGG | 0.629772 | 6_3:-89977999 | Msa0964020:CDS |
| TTTGTGCTTAAAAGACCACT+TGG | 0.632750 | 6_3:+89977074 | None:intergenic |
| AACCACTCCCAACAAACAAG+AGG | 0.633508 | 6_3:-89980561 | Msa0964020:CDS |
| TAATAGACAAATAGCTACAG+AGG | 0.634273 | 6_3:+89981843 | None:intergenic |
| CAGCACAAAGTCAATGAGAG+AGG | 0.636631 | 6_3:-89978026 | Msa0964020:CDS |
| CAGCAGAAATACCAACAGAA+GGG | 0.642583 | 6_3:+89978823 | None:intergenic |
| ATTGAACACATAATGTGATG+TGG | 0.664215 | 6_3:+89977162 | None:intergenic |
| GGACCTTAGAAGCAAAGCCA+GGG | 0.664228 | 6_3:-89981152 | Msa0964020:intron |
| GTACCTCAGCAGCAACATCA+GGG | 0.665566 | 6_3:+89980512 | None:intergenic |
| CAACCCTAACTGAGGCACCA+CGG | 0.665899 | 6_3:+89977333 | None:intergenic |
| GGTCCAAATCCAAAGACAAG+TGG | 0.673781 | 6_3:+89977183 | None:intergenic |
| GTCTCTTCCAACCCTAACTG+AGG | 0.685094 | 6_3:+89977325 | None:intergenic |
| AAGTCAATGAGAGAGGATGG+AGG | 0.709816 | 6_3:-89978019 | Msa0964020:CDS |
| ATGTAGGGTGTGGCAAACCG+TGG | 0.713160 | 6_3:-89977350 | Msa0964020:intron |
| CCACCAATAGGCCATCCTAG+TGG | 0.722635 | 6_3:+89980102 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAGGTATATTTTAAAA+GGG | - | chr6_3:89977321-89977340 | Msa0964020:CDS | 10.0% |
| !! | ATTTGTATTTATTCATTTAT+TGG | - | chr6_3:89977788-89977807 | Msa0964020:intron | 10.0% |
| !!! | ATTCAAGAAATATTAATTTT+TGG | + | chr6_3:89978665-89978684 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTATTATCTTAT+TGG | - | chr6_3:89979936-89979955 | Msa0964020:intron | 10.0% |
| !!! | ATTATATAACAATTTTATAG+TGG | - | chr6_3:89979986-89980005 | Msa0964020:intron | 10.0% |
| !!! | TTATATAACAATTTTATAGT+GGG | - | chr6_3:89979987-89980006 | Msa0964020:intron | 10.0% |
| !!! | TTCTAAATTTTTTATTTTGA+AGG | - | chr6_3:89980108-89980127 | Msa0964020:CDS | 10.0% |
| !!! | TCTAAATTTTTTATTTTGAA+GGG | - | chr6_3:89980109-89980128 | Msa0964020:CDS | 10.0% |
| !! | TATATATTATATTATTACAG+AGG | - | chr6_3:89980180-89980199 | Msa0964020:intron | 10.0% |
| !!! | AATTATTTTTACTAATTGTT+TGG | + | chr6_3:89981080-89981099 | None:intergenic | 10.0% |
| !!! | ATTCTTCTTTTTAAAAATTA+AGG | - | chr6_3:89981309-89981328 | Msa0964020:intron | 10.0% |
| !!! | TAATTTTATCATTAATAACA+TGG | - | chr6_3:89981823-89981842 | Msa0964020:five_prime_UTR | 10.0% |
| !!! | GATTATAGGTATATTTTAAA+AGG | - | chr6_3:89977320-89977339 | Msa0964020:CDS | 15.0% |
| !!! | ATTATTGTATAGTTTTCTTA+TGG | - | chr6_3:89977456-89977475 | Msa0964020:intron | 15.0% |
| !! | TTTAATTGTATCAAAAACAA+GGG | + | chr6_3:89977495-89977514 | None:intergenic | 15.0% |
| !!! | ATTCATTTATTGGTTTTTTT+TGG | - | chr6_3:89977798-89977817 | Msa0964020:intron | 15.0% |
| !! | AATAATCAAAACAAACAAAA+AGG | + | chr6_3:89978030-89978049 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTTTGACATAAT+TGG | - | chr6_3:89978124-89978143 | Msa0964020:intron | 15.0% |
| !!! | AATATACATTTTGATTAACT+AGG | + | chr6_3:89978191-89978210 | None:intergenic | 15.0% |
| !! | ATACTACATAATCTAAAAAA+GGG | + | chr6_3:89978434-89978453 | None:intergenic | 15.0% |
| !! | TATACTACATAATCTAAAAA+AGG | + | chr6_3:89978435-89978454 | None:intergenic | 15.0% |
| !! | GTTACAAAAACAAAAATTTA+AGG | + | chr6_3:89978975-89978994 | None:intergenic | 15.0% |
| !!! | TTTATTTTCCAATTTTTCTA+AGG | - | chr6_3:89979051-89979070 | Msa0964020:intron | 15.0% |
| !!! | ATATATATATTGTTTTGAAC+AGG | - | chr6_3:89979099-89979118 | Msa0964020:intron | 15.0% |
| !!! | TATATATATTGTTTTGAACA+GGG | - | chr6_3:89979100-89979119 | Msa0964020:intron | 15.0% |
| !!! | AACATTTTTATTGATATTCT+TGG | + | chr6_3:89980143-89980162 | None:intergenic | 15.0% |
| !!! | ATTTGTTAAAAACTTTTGTA+TGG | - | chr6_3:89980283-89980302 | Msa0964020:intron | 15.0% |
| !! | TAACAAACATTATAACATAT+TGG | - | chr6_3:89980434-89980453 | Msa0964020:intron | 15.0% |
| !!! | TCATTTTCTTATTATTTCAT+TGG | - | chr6_3:89980791-89980810 | Msa0964020:intron | 15.0% |
| !!! | AATTGAAATTTTTCTCATAT+TGG | - | chr6_3:89981096-89981115 | Msa0964020:intron | 15.0% |
| !!! | ATTTTACTCTAATAATTTCA+TGG | - | chr6_3:89981856-89981875 | Msa0964020:five_prime_UTR | 15.0% |
| !! | TGATATGTCATTATGATTAT+AGG | - | chr6_3:89977306-89977325 | Msa0964020:CDS | 20.0% |
| !! | GTTTAATTGTATCAAAAACA+AGG | + | chr6_3:89977496-89977515 | None:intergenic | 20.0% |
| !! | TATTACAAATAAACCATAGA+GGG | + | chr6_3:89977518-89977537 | None:intergenic | 20.0% |
| !! | ATATTACAAATAAACCATAG+AGG | + | chr6_3:89977519-89977538 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTATACAGGGT+TGG | - | chr6_3:89977659-89977678 | Msa0964020:intron | 20.0% |
| !! | TAAAACCTAAGAATCAAAAT+AGG | + | chr6_3:89978382-89978401 | None:intergenic | 20.0% |
| !! | GAATTTGAAAGGATAATAAA+TGG | + | chr6_3:89978405-89978424 | None:intergenic | 20.0% |
| !! | TATTTCTTGAATGTATTAAC+AGG | - | chr6_3:89978673-89978692 | Msa0964020:intron | 20.0% |
| !! | CAAAACAAGATAAACATAAA+GGG | + | chr6_3:89978841-89978860 | None:intergenic | 20.0% |
| !!! | GGTTGAAAAATTTGATAATT+GGG | + | chr6_3:89978871-89978890 | None:intergenic | 20.0% |
| !!! | TGGTTGAAAAATTTGATAAT+TGG | + | chr6_3:89978872-89978891 | None:intergenic | 20.0% |
| !! | GGAAAATAAAAAGTTATGTA+CGG | + | chr6_3:89979041-89979060 | None:intergenic | 20.0% |
| !!! | AAATATTTTGATGTAATACC+TGG | + | chr6_3:89979249-89979268 | None:intergenic | 20.0% |
| !!! | AGATAAATTGTTCATTTTAG+AGG | - | chr6_3:89979655-89979674 | Msa0964020:CDS | 20.0% |
| !!! | AAACATTCTAGTCTTTAAAA+TGG | - | chr6_3:89979710-89979729 | Msa0964020:CDS | 20.0% |
| !!! | TTTGTTATTATGTGAATTTG+TGG | - | chr6_3:89979800-89979819 | Msa0964020:intron | 20.0% |
| !!! | TTTGTTATTATGTGAATTTG+TGG | - | chr6_3:89979800-89979819 | Msa0964020:intron | 20.0% |
| !! | ATCAACTATTACAATTTCAA+GGG | - | chr6_3:89979876-89979895 | Msa0964020:intron | 20.0% |
| !! | CAAACAAACAAATATCAAAA+TGG | + | chr6_3:89980357-89980376 | None:intergenic | 20.0% |
| !!! | TGATTTTTCAATAACAAACT+AGG | - | chr6_3:89981138-89981157 | Msa0964020:intron | 20.0% |
| !!! | GATTTTTCAATAACAAACTA+GGG | - | chr6_3:89981139-89981158 | Msa0964020:intron | 20.0% |
| !!! | AAATATTAAGGTATGTTTTG+AGG | + | chr6_3:89981437-89981456 | None:intergenic | 20.0% |
| !!! | CAAAACATACCTTAATATTT+TGG | - | chr6_3:89981437-89981456 | Msa0964020:intron | 20.0% |
| !!! | ATACCTTAATATTTTGGATT+TGG | - | chr6_3:89981443-89981462 | Msa0964020:intron | 20.0% |
| !! | ATACCAAATCCAAAATATTA+AGG | + | chr6_3:89981449-89981468 | None:intergenic | 20.0% |
| !!! | AATCTCTAGCTTTTTTGTTA+AGG | + | chr6_3:89976983-89977002 | None:intergenic | 25.0% |
| ! | AGATTATTGCTGAATACATA+TGG | - | chr6_3:89977131-89977150 | Msa0964020:three_prime_UTR | 25.0% |
| !! | ATACATATGGTAAGGTTTTA+AGG | - | chr6_3:89977144-89977163 | Msa0964020:three_prime_UTR | 25.0% |
| ! | TACATAAACCTTATGAAAAC+AGG | - | chr6_3:89977179-89977198 | Msa0964020:three_prime_UTR | 25.0% |
| ! | ACATAAACCTTATGAAAACA+GGG | - | chr6_3:89977180-89977199 | Msa0964020:three_prime_UTR | 25.0% |
| ! | TAAATAAACCATAGGTTTAG+AGG | + | chr6_3:89977408-89977427 | None:intergenic | 25.0% |
| ! | CTAAACCTATGGTTTATTTA+TGG | - | chr6_3:89977408-89977427 | Msa0964020:intron | 25.0% |
| ! | TTGATCCATAAATAAACCAT+AGG | + | chr6_3:89977416-89977435 | None:intergenic | 25.0% |
| ! | AATAGATCAACCAAAGAAAA+GGG | + | chr6_3:89977581-89977600 | None:intergenic | 25.0% |
| ! | TAATAGATCAACCAAAGAAA+AGG | + | chr6_3:89977582-89977601 | None:intergenic | 25.0% |
| ! | TTAAGAAATAACAATTACCC+TGG | + | chr6_3:89977714-89977733 | None:intergenic | 25.0% |
| !!! | ATACATTTTGATTAACTAGG+AGG | + | chr6_3:89978188-89978207 | None:intergenic | 25.0% |
| ! | TTGTGGGAAAAAAAATATTC+AGG | - | chr6_3:89978232-89978251 | Msa0964020:intron | 25.0% |
| !!! | AAGGGTTTTAAGAATTTGAA+AGG | + | chr6_3:89978416-89978435 | None:intergenic | 25.0% |
| ! | ATGACAAATAATGTGTTACA+TGG | + | chr6_3:89978580-89978599 | None:intergenic | 25.0% |
| ! | TATTGCAGAAAGATACTAAT+TGG | - | chr6_3:89978721-89978740 | Msa0964020:intron | 25.0% |
| ! | CAAGAAAAAATTCATACTTG+TGG | + | chr6_3:89978780-89978799 | None:intergenic | 25.0% |
| ! | AAAATCAAGAAGGAAAAAGA+AGG | + | chr6_3:89978813-89978832 | None:intergenic | 25.0% |
| ! | CCAAAACAAGATAAACATAA+AGG | + | chr6_3:89978842-89978861 | None:intergenic | 25.0% |
| !!! | CCTTTATGTTTATCTTGTTT+TGG | - | chr6_3:89978839-89978858 | Msa0964020:CDS | 25.0% |
| ! | AAAGACATGTATCTTAGATT+TGG | + | chr6_3:89978892-89978911 | None:intergenic | 25.0% |
| ! | AATAAGAAAAACCATTTCCT+TGG | + | chr6_3:89978918-89978937 | None:intergenic | 25.0% |
| ! | CAAAAGAACCTTAGAAAAAT+TGG | + | chr6_3:89979062-89979081 | None:intergenic | 25.0% |
| !! | TAAGAAATATGTTGATAGAG+AGG | - | chr6_3:89979741-89979760 | Msa0964020:intron | 25.0% |
| ! | GATCAACTATTACAATTTCA+AGG | - | chr6_3:89979875-89979894 | Msa0964020:intron | 25.0% |
| !! | TTTGTTACATTGTTGTTACT+AGG | - | chr6_3:89980373-89980392 | Msa0964020:intron | 25.0% |
| !! | TTGTTACATTGTTGTTACTA+GGG | - | chr6_3:89980374-89980393 | Msa0964020:intron | 25.0% |
| ! | ATTTACTCAAATTTCGCTAT+GGG | + | chr6_3:89980506-89980525 | None:intergenic | 25.0% |
| ! | ACTAAATAGTGGTTAAATAG+TGG | + | chr6_3:89980574-89980593 | None:intergenic | 25.0% |
| ! | TAAGTATTTGTCAAGAAAGT+TGG | - | chr6_3:89981040-89981059 | Msa0964020:intron | 25.0% |
| !!! | AATGATGGATTTTAGATATG+AGG | - | chr6_3:89981184-89981203 | Msa0964020:intron | 25.0% |
| ! | TGTTATGTTTCATTGTATGT+AGG | - | chr6_3:89981480-89981499 | Msa0964020:intron | 25.0% |
| ! | GTTATGTTTCATTGTATGTA+GGG | - | chr6_3:89981481-89981500 | Msa0964020:intron | 25.0% |
| ! | ATTATTGTCATCCAAATACA+TGG | + | chr6_3:89981807-89981826 | None:intergenic | 25.0% |
| TTTGTTAAGGTCAAAAGAGA+GGG | + | chr6_3:89976970-89976989 | None:intergenic | 30.0% | |
| ! | TTTTGTTAAGGTCAAAAGAG+AGG | + | chr6_3:89976971-89976990 | None:intergenic | 30.0% |
| TAATAGACAAATAGCTACAG+AGG | + | chr6_3:89977006-89977025 | None:intergenic | 30.0% | |
| ! | TTCAGCAATAATCTTTTCAG+AGG | + | chr6_3:89977125-89977144 | None:intergenic | 30.0% |
| ATTGCTGAATACATATGGTA+AGG | - | chr6_3:89977136-89977155 | Msa0964020:three_prime_UTR | 30.0% | |
| CATAAACCTTATGAAAACAG+GGG | - | chr6_3:89977181-89977200 | Msa0964020:three_prime_UTR | 30.0% | |
| ! | GTATCAAAAACAAGGGTTTT+AGG | + | chr6_3:89977488-89977507 | None:intergenic | 30.0% |
| TGATACAATTAAACCCTCTA+TGG | - | chr6_3:89977502-89977521 | Msa0964020:intron | 30.0% | |
| !!! | TATTTTTTATACAGGGTTGG+TGG | - | chr6_3:89977662-89977681 | Msa0964020:intron | 30.0% |
| !!! | TCCATTTAGGAAGTTTTGAA+GGG | + | chr6_3:89977864-89977883 | None:intergenic | 30.0% |
| !! | TTCCATTTAGGAAGTTTTGA+AGG | + | chr6_3:89977865-89977884 | None:intergenic | 30.0% |
| ATATTGTTGCCTTGTCTAAA+TGG | + | chr6_3:89978087-89978106 | None:intergenic | 30.0% | |
| TTTGACAAATGTTCACTTTG+TGG | - | chr6_3:89978215-89978234 | Msa0964020:intron | 30.0% | |
| TTGACAAATGTTCACTTTGT+GGG | - | chr6_3:89978216-89978235 | Msa0964020:intron | 30.0% | |
| AAGAATCAAAATAGGAGGTT+AGG | + | chr6_3:89978374-89978393 | None:intergenic | 30.0% | |
| !!! | AACCTCCTATTTTGATTCTT+AGG | - | chr6_3:89978374-89978393 | Msa0964020:intron | 30.0% |
| AACCTAAGAATCAAAATAGG+AGG | + | chr6_3:89978379-89978398 | None:intergenic | 30.0% | |
| CTTGAATGTATTAACAGGTA+TGG | - | chr6_3:89978678-89978697 | Msa0964020:intron | 30.0% | |
| AAGGGAACAAAAAATCAAGA+AGG | + | chr6_3:89978823-89978842 | None:intergenic | 30.0% | |
| ATTAACATTAGTGGCATCAA+TGG | - | chr6_3:89979208-89979227 | Msa0964020:intron | 30.0% | |
| GATTTACTCAAATTTCGCTA+TGG | + | chr6_3:89980507-89980526 | None:intergenic | 30.0% | |
| TTTGATGTGTGTCCAAAAAA+AGG | - | chr6_3:89981274-89981293 | Msa0964020:intron | 30.0% | |
| ATTGAACACATAATGTGATG+TGG | + | chr6_3:89981687-89981706 | None:intergenic | 30.0% | |
| TGGACAATTACTACTAATGA+AGG | + | chr6_3:89981755-89981774 | None:intergenic | 30.0% | |
| ATTAGTAGTAATTGTCCAAG+TGG | - | chr6_3:89981757-89981776 | Msa0964020:CDS | 30.0% | |
| AAGCATTTAGTCCATGTATT+TGG | - | chr6_3:89981793-89981812 | Msa0964020:five_prime_UTR | 30.0% | |
| !! | ATTCAATGTGTTGCTTCTTT+AGG | - | chr6_3:89981911-89981930 | Msa0964020:five_prime_UTR | 30.0% |
| ! | GACATGATGATGAATAGTGA+AGG | + | chr6_3:89977064-89977083 | None:intergenic | 35.0% |
| ! | GGATACTCTGTTTTCAAACA+GGG | - | chr6_3:89977202-89977221 | Msa0964020:exon | 35.0% |
| ! | GATACTCTGTTTTCAAACAG+GGG | - | chr6_3:89977203-89977222 | Msa0964020:exon | 35.0% |
| TCAATGTTCCTCTAAACCTA+TGG | - | chr6_3:89977397-89977416 | Msa0964020:intron | 35.0% | |
| ! | AGTCCTAAAACCCTTTTCTT+TGG | - | chr6_3:89977568-89977587 | Msa0964020:intron | 35.0% |
| ! | CAACCAAAGAAAAGGGTTTT+AGG | + | chr6_3:89977574-89977593 | None:intergenic | 35.0% |
| TTGAATAAACAGACTCTACC+TGG | - | chr6_3:89977826-89977845 | Msa0964020:intron | 35.0% | |
| ACCCTTCAAAACTTCCTAAA+TGG | - | chr6_3:89977860-89977879 | Msa0964020:intron | 35.0% | |
| CTTCCTAAATGGAACTATGA+TGG | - | chr6_3:89977871-89977890 | Msa0964020:intron | 35.0% | |
| GATCCATCATAGTTCCATTT+AGG | + | chr6_3:89977877-89977896 | None:intergenic | 35.0% | |
| ATAACTTCACTATCTTGTCC+TGG | + | chr6_3:89977916-89977935 | None:intergenic | 35.0% | |
| !! | AAGTCCACAAGCTATTTTCA+AGG | - | chr6_3:89978059-89978078 | Msa0964020:intron | 35.0% |
| TTCAAGGATCCATTTAGACA+AGG | - | chr6_3:89978075-89978094 | Msa0964020:intron | 35.0% | |
| ! | ATCAGGGTGACTGAAAATTT+TGG | + | chr6_3:89978321-89978340 | None:intergenic | 35.0% |
| AGGTTAGGAAATACATACCA+TGG | + | chr6_3:89978359-89978378 | None:intergenic | 35.0% | |
| AAAGATACTAATTGGCCACT+AGG | - | chr6_3:89978729-89978748 | Msa0964020:intron | 35.0% | |
| AAAATTCATACTTGTGGTCC+TGG | + | chr6_3:89978774-89978793 | None:intergenic | 35.0% | |
| AACAGGGTCCATATTATTGT+GGG | - | chr6_3:89979116-89979135 | Msa0964020:intron | 35.0% | |
| !! | ATTGGTGCTGATAAAGCATA+TGG | - | chr6_3:89979139-89979158 | Msa0964020:intron | 35.0% |
| TACAAAGCTTGTCTTTATGC+TGG | - | chr6_3:89979184-89979203 | Msa0964020:intron | 35.0% | |
| TATGCTGGCATTAACATTAG+TGG | - | chr6_3:89979199-89979218 | Msa0964020:intron | 35.0% | |
| ATGAGCTATCGATGAAATCA+TGG | + | chr6_3:89979612-89979631 | None:intergenic | 35.0% | |
| TTTCTGCTGGAGATGAAATT+TGG | - | chr6_3:89980037-89980056 | Msa0964020:intron | 35.0% | |
| TTCTGCTGGAGATGAAATTT+GGG | - | chr6_3:89980038-89980057 | Msa0964020:intron | 35.0% | |
| !! | GTTAAAAAGGGCATTCTAAC+CGG | + | chr6_3:89980254-89980273 | None:intergenic | 35.0% |
| ! | ATTGTTGTTACTAGGGTGAT+TGG | - | chr6_3:89980381-89980400 | Msa0964020:intron | 35.0% |
| CGCACAAAGATACTAAATAG+TGG | + | chr6_3:89980585-89980604 | None:intergenic | 35.0% | |
| GTATCTTTGTGCGAAAATAG+TGG | - | chr6_3:89980592-89980611 | Msa0964020:CDS | 35.0% | |
| GTTCAAATCAGTTGAAATCG+TGG | + | chr6_3:89980633-89980652 | None:intergenic | 35.0% | |
| ACGCATATTGCGAAAAATAG+TGG | + | chr6_3:89980733-89980752 | None:intergenic | 35.0% | |
| AGGCTATGAAATCATCAAGA+AGG | - | chr6_3:89980847-89980866 | Msa0964020:intron | 35.0% | |
| ! | CCTCAATCTAAGCTTTTCAA+TGG | + | chr6_3:89980873-89980892 | None:intergenic | 35.0% |
| CCATTGAAAAGCTTAGATTG+AGG | - | chr6_3:89980870-89980889 | Msa0964020:intron | 35.0% | |
| AAAGCTTAGATTGAGGCATA+AGG | - | chr6_3:89980877-89980896 | Msa0964020:intron | 35.0% | |
| ! | AGACATCAACACCTTTTCTT+GGG | - | chr6_3:89980961-89980980 | Msa0964020:CDS | 35.0% |
| TAAAGAACTGACCCAAGAAA+AGG | + | chr6_3:89980975-89980994 | None:intergenic | 35.0% | |
| TCAATAACAAACTAGGGCTT+TGG | - | chr6_3:89981145-89981164 | Msa0964020:intron | 35.0% | |
| GTGTCCAAAAAAAGGATATG+AGG | - | chr6_3:89981282-89981301 | Msa0964020:intron | 35.0% | |
| !!! | ACGTCCTCATATCCTTTTTT+TGG | + | chr6_3:89981289-89981308 | None:intergenic | 35.0% |
| TAGGGATCCATATTAGAAGA+AGG | + | chr6_3:89981586-89981605 | None:intergenic | 35.0% | |
| TTCTAATATGGATCCCTATG+TGG | - | chr6_3:89981588-89981607 | Msa0964020:intron | 35.0% | |
| ACTTCATGGTTTCCATAGAA+GGG | + | chr6_3:89981638-89981657 | None:intergenic | 35.0% | |
| TTTGTGCTTAAAAGACCACT+TGG | + | chr6_3:89981775-89981794 | None:intergenic | 35.0% | |
| ! | TTGCTTCTTTAGGAAAAGCT+TGG | - | chr6_3:89981921-89981940 | Msa0964020:five_prime_UTR | 35.0% |
| ! | GAGTATCCCCTGTTTTCATA+AGG | + | chr6_3:89977190-89977209 | None:intergenic | 40.0% |
| ! | GGGATACTCTGTTTTCAAAC+AGG | - | chr6_3:89977201-89977220 | Msa0964020:exon | 40.0% |
| GGATCCTTGAAAATAGCTTG+TGG | + | chr6_3:89978066-89978085 | None:intergenic | 40.0% | |
| ! | CATTGTGCCTCTTGTTTGTT+GGG | + | chr6_3:89978295-89978314 | None:intergenic | 40.0% |
| ACGACAATGATCATTGACAC+TGG | - | chr6_3:89978481-89978500 | Msa0964020:intron | 40.0% | |
| ATACTAATTGGCCACTAGGA+TGG | - | chr6_3:89978733-89978752 | Msa0964020:intron | 40.0% | |
| AGATACATGTCTTTGTGCCA+AGG | - | chr6_3:89978898-89978917 | Msa0964020:intron | 40.0% | |
| ATGTCTTTGTGCCAAGGAAA+TGG | - | chr6_3:89978904-89978923 | Msa0964020:intron | 40.0% | |
| GAACAGGGTCCATATTATTG+TGG | - | chr6_3:89979115-89979134 | Msa0964020:intron | 40.0% | |
| GGTCCATATTATTGTGGGAT+TGG | - | chr6_3:89979121-89979140 | Msa0964020:intron | 40.0% | |
| GCACCAATCCCACAATAATA+TGG | + | chr6_3:89979127-89979146 | None:intergenic | 40.0% | |
| ! | TTTTGATGTAATACCTGGCC+AGG | + | chr6_3:89979244-89979263 | None:intergenic | 40.0% |
| ! | TTATAGTGGGAGTTCCAAGT+TGG | - | chr6_3:89980000-89980019 | Msa0964020:intron | 40.0% |
| CAGCAGAAATACCAACAGAA+GGG | + | chr6_3:89980026-89980045 | None:intergenic | 40.0% | |
| ATTTGACCCTAAGCCAATTC+CGG | - | chr6_3:89980232-89980251 | Msa0964020:intron | 40.0% | |
| ! | TTCTAACCGGAATTGGCTTA+GGG | + | chr6_3:89980241-89980260 | None:intergenic | 40.0% |
| ! | ATTCTAACCGGAATTGGCTT+AGG | + | chr6_3:89980242-89980261 | None:intergenic | 40.0% |
| TGTTACTAGGGTGATTGGAA+TGG | - | chr6_3:89980386-89980405 | Msa0964020:intron | 40.0% | |
| ACAAAGTCAATGAGAGAGGA+TGG | - | chr6_3:89980824-89980843 | Msa0964020:intron | 40.0% | |
| ! | CAGACATCAACACCTTTTCT+TGG | - | chr6_3:89980960-89980979 | Msa0964020:CDS | 40.0% |
| ACCTCTTAGGGTTTGAATGA+TGG | - | chr6_3:89981169-89981188 | Msa0964020:CDS | 40.0% | |
| TCCATCATTCAAACCCTAAG+AGG | + | chr6_3:89981173-89981192 | None:intergenic | 40.0% | |
| CAAACTTGTGTTACCAAGCT+CGG | + | chr6_3:89981218-89981237 | None:intergenic | 40.0% | |
| ACATCTTAATGCTCCTACTC+AGG | + | chr6_3:89981244-89981263 | None:intergenic | 40.0% | |
| !! | GAGTAGGAGCATTAAGATGT+TGG | - | chr6_3:89981244-89981263 | Msa0964020:intron | 40.0% |
| !! | AGGAGCATTAAGATGTTGGA+AGG | - | chr6_3:89981248-89981267 | Msa0964020:intron | 40.0% |
| GTTTCATTGTATGTAGGGTG+TGG | - | chr6_3:89981486-89981505 | Msa0964020:intron | 40.0% | |
| GGAAGAGACACAGAAAAAGA+TGG | - | chr6_3:89981535-89981554 | Msa0964020:intron | 40.0% | |
| GACACAGAAAAAGATGGCAA+AGG | - | chr6_3:89981541-89981560 | Msa0964020:intron | 40.0% | |
| ! | AGATGGCAAAGGTTACTTTG+AGG | - | chr6_3:89981552-89981571 | Msa0964020:intron | 40.0% |
| ! | AAGGTTACTTTGAGGACAGA+AGG | - | chr6_3:89981560-89981579 | Msa0964020:intron | 40.0% |
| CAGAAGGCCTTCTTCTAATA+TGG | - | chr6_3:89981576-89981595 | Msa0964020:intron | 40.0% | |
| ATCATGGAAGTGACCACATA+GGG | + | chr6_3:89981604-89981623 | None:intergenic | 40.0% | |
| AATCATGGAAGTGACCACAT+AGG | + | chr6_3:89981605-89981624 | None:intergenic | 40.0% | |
| AAGGGTAGTTTCAGCAATCA+TGG | + | chr6_3:89981620-89981639 | None:intergenic | 40.0% | |
| TTGCTGAAACTACCCTTCTA+TGG | - | chr6_3:89981623-89981642 | Msa0964020:intron | 40.0% | |
| GACTTCATGGTTTCCATAGA+AGG | + | chr6_3:89981639-89981658 | None:intergenic | 40.0% | |
| AAGTCACAACCACTTGTCTT+TGG | - | chr6_3:89981654-89981673 | Msa0964020:intron | 40.0% | |
| CAACCACTTGTCTTTGGATT+TGG | - | chr6_3:89981660-89981679 | Msa0964020:intron | 40.0% | |
| ! | CAGAGGATTCTGAGAGATTG+AGG | + | chr6_3:89977108-89977127 | None:intergenic | 45.0% |
| !! | TTATACAGGGTTGGTGGATC+TGG | - | chr6_3:89977668-89977687 | Msa0964020:intron | 45.0% |
| !! | TTACCCTGGCTTTGCTTCTA+AGG | + | chr6_3:89977700-89977719 | None:intergenic | 45.0% |
| !!! | AGTTTTGAAGGGTCACTCAC+TGG | + | chr6_3:89977853-89977872 | None:intergenic | 45.0% |
| TCAAGCACAAATCAAGCTCC+AGG | - | chr6_3:89977895-89977914 | Msa0964020:CDS | 45.0% | |
| AACCACTCCCAACAAACAAG+AGG | - | chr6_3:89978285-89978304 | Msa0964020:intron | 45.0% | |
| ! | GCATTGTGCCTCTTGTTTGT+TGG | + | chr6_3:89978296-89978315 | None:intergenic | 45.0% |
| CATTAGTGGCATCAATGGAG+AGG | - | chr6_3:89979213-89979232 | Msa0964020:intron | 45.0% | |
| ATCAATGGAGAGGTTATGCC+TGG | - | chr6_3:89979223-89979242 | Msa0964020:intron | 45.0% | |
| CCAGCAGAAATACCAACAGA+AGG | + | chr6_3:89980027-89980046 | None:intergenic | 45.0% | |
| ! | CCTTCTGTTGGTATTTCTGC+TGG | - | chr6_3:89980024-89980043 | Msa0964020:intron | 45.0% |
| !! | AAGGGCATTCTAACCGGAAT+TGG | + | chr6_3:89980248-89980267 | None:intergenic | 45.0% |
| CTGGTGCTCACACAAACTAT+AGG | - | chr6_3:89980411-89980430 | Msa0964020:intron | 45.0% | |
| !! | CTCTCTCATTGACTTTGTGC+TGG | + | chr6_3:89980822-89980841 | None:intergenic | 45.0% |
| CAGCACAAAGTCAATGAGAG+AGG | - | chr6_3:89980820-89980839 | Msa0964020:intron | 45.0% | |
| AAGTCAATGAGAGAGGATGG+AGG | - | chr6_3:89980827-89980846 | Msa0964020:intron | 45.0% | |
| ! | AAGGAGCACATTGCTGCTTA+TGG | - | chr6_3:89980896-89980915 | Msa0964020:intron | 45.0% |
| ! | CACATTGCTGCTTATGGAGA+AGG | - | chr6_3:89980902-89980921 | Msa0964020:intron | 45.0% |
| ! | TAGGGCTTTGGTACCTCTTA+GGG | - | chr6_3:89981157-89981176 | Msa0964020:CDS | 45.0% |
| CACAAGTTTGTGACCTGAGT+AGG | - | chr6_3:89981228-89981247 | Msa0964020:intron | 45.0% | |
| GACAAGTGGTTGTGACTTCA+TGG | + | chr6_3:89981652-89981671 | None:intergenic | 45.0% | |
| GGTCCAAATCCAAAGACAAG+TGG | + | chr6_3:89981666-89981685 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTATTTTTTATAC+AGG | - | chr6_3:89977654-89977673 | Msa0964020:intron | 5.0% |
| !!! | TTTTTTTTATTTTTTATACA+GGG | - | chr6_3:89977655-89977674 | Msa0964020:intron | 5.0% |
| !! | TATATTAATTATATTTGAAT+AGG | - | chr6_3:89978156-89978175 | Msa0964020:intron | 5.0% |
| !! | AATTTAAAAATAGTTAAAAA+GGG | + | chr6_3:89980266-89980285 | None:intergenic | 5.0% |
| !! | AAATTTAAAAATAGTTAAAA+AGG | + | chr6_3:89980267-89980286 | None:intergenic | 5.0% |
| TGGACCTTAGAAGCAAAGCC+AGG | - | chr6_3:89977693-89977712 | Msa0964020:intron | 50.0% | |
| GGACCTTAGAAGCAAAGCCA+GGG | - | chr6_3:89977694-89977713 | Msa0964020:intron | 50.0% | |
| TGTGATGTTTACACCCCAGC+TGG | - | chr6_3:89978260-89978279 | Msa0964020:intron | 50.0% | |
| ! | TGCCTCTTGTTTGTTGGGAG+TGG | + | chr6_3:89978290-89978309 | None:intergenic | 50.0% |
| GTACCTCAGCAGCAACATCA+GGG | + | chr6_3:89978337-89978356 | None:intergenic | 50.0% | |
| ! | ATGTTGCTGCTGAGGTACCA+TGG | - | chr6_3:89978339-89978358 | Msa0964020:intron | 50.0% |
| ! | TTCCAAGTTGGCCCTTCTGT+TGG | - | chr6_3:89980012-89980031 | Msa0964020:intron | 50.0% |
| TACCAACAGAAGGGCCAACT+TGG | + | chr6_3:89980017-89980036 | None:intergenic | 50.0% | |
| GGCTGCTCGTTACATTCTAG+AGG | - | chr6_3:89980059-89980078 | Msa0964020:intron | 50.0% | |
| CAGAGGATCACAGAGATAGC+TGG | - | chr6_3:89980197-89980216 | Msa0964020:intron | 50.0% | |
| GATCACAGAGATAGCTGGAG+TGG | - | chr6_3:89980202-89980221 | Msa0964020:intron | 50.0% | |
| TAGGGTGATTGGAATGGAGC+TGG | - | chr6_3:89980392-89980411 | Msa0964020:intron | 50.0% | |
| GGAAATGAGAGACGTCTCAC+TGG | - | chr6_3:89980923-89980942 | Msa0964020:intron | 50.0% | |
| ! | CTAGGGCTTTGGTACCTCTT+AGG | - | chr6_3:89981156-89981175 | Msa0964020:CDS | 50.0% |
| TGAGGACATATTGCCGAGCT+TGG | - | chr6_3:89981202-89981221 | Msa0964020:intron | 50.0% | |
| AAACCGTGGTGCCTCAGTTA+GGG | - | chr6_3:89981510-89981529 | Msa0964020:intron | 50.0% | |
| GTCTCTTCCAACCCTAACTG+AGG | + | chr6_3:89981524-89981543 | None:intergenic | 50.0% | |
| !! | CAGGGTTGGTGGATCTGGTA+TGG | - | chr6_3:89977673-89977692 | Msa0964020:intron | 55.0% |
| TTGGGAGTGGTTCACCAGCT+GGG | + | chr6_3:89978277-89978296 | None:intergenic | 55.0% | |
| TCACCCTGATGTTGCTGCTG+AGG | - | chr6_3:89978331-89978350 | Msa0964020:intron | 55.0% | |
| GGTACCTCAGCAGCAACATC+AGG | + | chr6_3:89978338-89978357 | None:intergenic | 55.0% | |
| TGGCCACTAGGATGGCCTAT+TGG | - | chr6_3:89978741-89978760 | Msa0964020:intron | 55.0% | |
| CCACCAATAGGCCATCCTAG+TGG | + | chr6_3:89978747-89978766 | None:intergenic | 55.0% | |
| CCACTAGGATGGCCTATTGG+TGG | - | chr6_3:89978744-89978763 | Msa0964020:intron | 55.0% | |
| ! | TGGCCTATTGGTGGCTTTCC+AGG | - | chr6_3:89978753-89978772 | Msa0964020:intron | 55.0% |
| GGTCCTGGAAAGCCACCAAT+AGG | + | chr6_3:89978759-89978778 | None:intergenic | 55.0% | |
| ATGTAGGGTGTGGCAAACCG+TGG | - | chr6_3:89981496-89981515 | Msa0964020:intron | 55.0% | |
| CAAACCGTGGTGCCTCAGTT+AGG | - | chr6_3:89981509-89981528 | Msa0964020:intron | 55.0% | |
| ! | CAACCCTAACTGAGGCACCA+CGG | + | chr6_3:89981516-89981535 | None:intergenic | 55.0% |
| GAAGGGTCACTCACTGGACC+AGG | + | chr6_3:89977847-89977866 | None:intergenic | 60.0% | |
| TGGGAGTGGTTCACCAGCTG+GGG | + | chr6_3:89978276-89978295 | None:intergenic | 60.0% | |
| GTTGGGAGTGGTTCACCAGC+TGG | + | chr6_3:89978278-89978297 | None:intergenic | 60.0% | |
| TGGAGAGGTTATGCCTGGCC+AGG | - | chr6_3:89979228-89979247 | Msa0964020:intron | 60.0% | |
| CGTGGTGCCTCAGTTAGGGT+TGG | - | chr6_3:89981514-89981533 | Msa0964020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 89976919 | 89981949 | 89976919 | ID=Msa0964020;Name=Msa0964020 |
| chr6_3 | mRNA | 89976919 | 89981949 | 89976919 | ID=Msa0964020-mRNA-1;Parent=Msa0964020;Name=Msa0964020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=160|1|1|1|1|1|12|295|356 |
| chr6_3 | exon | 89976919 | 89977366 | 89976919 | ID=Msa0964020-mRNA-1:exon:16206;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89977886 | 89978045 | 89977886 | ID=Msa0964020-mRNA-1:exon:16205;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89978436 | 89978473 | 89978436 | ID=Msa0964020-mRNA-1:exon:16204;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89978615 | 89978668 | 89978615 | ID=Msa0964020-mRNA-1:exon:16203;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89978788 | 89978862 | 89978788 | ID=Msa0964020-mRNA-1:exon:16202;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89979619 | 89979747 | 89979619 | ID=Msa0964020-mRNA-1:exon:16201;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89980086 | 89980173 | 89980086 | ID=Msa0964020-mRNA-1:exon:16200;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89980508 | 89980614 | 89980508 | ID=Msa0964020-mRNA-1:exon:16199;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89980758 | 89980806 | 89980758 | ID=Msa0964020-mRNA-1:exon:16198;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89980927 | 89981030 | 89980927 | ID=Msa0964020-mRNA-1:exon:16197;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89981153 | 89981192 | 89981153 | ID=Msa0964020-mRNA-1:exon:16196;Parent=Msa0964020-mRNA-1 |
| chr6_3 | exon | 89981716 | 89981949 | 89981716 | ID=Msa0964020-mRNA-1:exon:16195;Parent=Msa0964020-mRNA-1 |
| chr6_3 | five_prime_UTR | 89981790 | 89981949 | 89981790 | ID=Msa0964020-mRNA-1:five_prime_utr;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89981716 | 89981789 | 89981716 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89981153 | 89981192 | 89981153 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89980927 | 89981030 | 89980927 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89980758 | 89980806 | 89980758 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89980508 | 89980614 | 89980508 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89980086 | 89980173 | 89980086 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89979619 | 89979747 | 89979619 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89978788 | 89978862 | 89978788 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89978615 | 89978668 | 89978615 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89978436 | 89978473 | 89978436 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89977886 | 89978045 | 89977886 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | CDS | 89977214 | 89977366 | 89977214 | ID=Msa0964020-mRNA-1:cds;Parent=Msa0964020-mRNA-1 |
| chr6_3 | three_prime_UTR | 89976919 | 89977213 | 89976919 | ID=Msa0964020-mRNA-1:three_prime_utr;Parent=Msa0964020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
