AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349250 MtrunA17_Chr1g0199681 96.795 624 14 2 1 623 76 694 0.0 1253
Msa1349250 MtrunA17_Chr2g0326761 57.968 571 201 10 10 573 2 540 0.0 610
Msa1349250 MtrunA17_Chr4g0028971 57.931 580 207 16 8 575 1 555 0.0 569
Msa1349250 MtrunA17_Chr1g0181211 53.199 594 208 15 13 577 21 573 0.0 560
Msa1349250 MtrunA17_Chr7g0264171 49.114 621 258 18 10 612 22 602 4.59e-177 516
Msa1349250 MtrunA17_Chr7g0264161 54.867 339 111 4 28 362 1 301 1.04e-124 370
Msa1349250 MtrunA17_Chr3g0115271 38.625 611 287 17 16 594 16 570 1.00e-113 352
Msa1349250 MtrunA17_Chr5g0424931 37.801 582 268 22 16 578 16 522 1.42e-99 313
Msa1349250 MtrunA17_Chr5g0417281 37.792 471 215 13 11 463 3 413 1.94e-87 281
Msa1349250 MtrunA17_Chr5g0433301 39.386 391 190 8 9 390 14 366 9.91e-81 272
Msa1349250 MtrunA17_Chr2g0282961 39.578 379 176 8 15 382 51 387 3.77e-80 265
Msa1349250 MtrunA17_Chr4g0070181 40.000 380 181 9 13 384 17 357 5.11e-80 274
Msa1349250 MtrunA17_Chr5g0436761 35.579 475 231 12 8 472 1 410 4.55e-79 258
Msa1349250 MtrunA17_Chr2g0285461 38.200 411 208 8 9 411 13 385 9.98e-79 268
Msa1349250 MtrunA17_Chr3g0109391 39.018 387 189 8 13 390 20 368 9.77e-78 264
Msa1349250 MtrunA17_Chr2g0289221 39.541 392 169 10 16 392 17 355 1.59e-77 250
Msa1349250 MtrunA17_Chr8g0376771 37.805 410 210 8 9 411 13 384 2.26e-77 264
Msa1349250 MtrunA17_Chr4g0046371 39.948 383 179 10 12 382 33 376 3.86e-77 259
Msa1349250 MtrunA17_Chr1g0178011 37.093 399 199 8 14 406 7 359 5.64e-77 252
Msa1349250 MtrunA17_Chr1g0156321 38.847 399 192 11 14 402 38 394 6.68e-75 256
Msa1349250 MtrunA17_Chr2g0301251 39.153 378 185 8 14 384 18 357 1.09e-72 253
Msa1349250 MtrunA17_Chr8g0385791 37.562 402 203 8 10 403 50 411 1.37e-72 249
Msa1349250 MtrunA17_Chr5g0417211 39.247 372 155 9 16 372 9 324 4.21e-71 235
Msa1349250 MtrunA17_Chr4g0029671 37.772 413 179 10 19 403 54 416 1.15e-70 243
Msa1349250 MtrunA17_Chr8g0389081 38.760 387 188 8 9 385 22 369 2.39e-70 246
Msa1349250 MtrunA17_Chr2g0277461 37.531 397 187 14 19 406 13 357 1.96e-69 232
Msa1349250 MtrunA17_Chr2g0326281 37.438 406 182 9 19 392 56 421 2.78e-69 240
Msa1349250 MtrunA17_Chr4g0009751 37.500 400 196 10 15 403 15 371 2.76e-68 233
Msa1349250 MtrunA17_Chr2g0276781 36.962 395 195 7 11 394 15 366 5.12e-68 234
Msa1349250 MtrunA17_Chr7g0239061 35.941 409 205 12 8 404 3 366 1.04e-61 217
Msa1349250 MtrunA17_Chr8g0346711 37.783 397 195 10 16 403 26 379 5.12e-61 215
Msa1349250 MtrunA17_Chr5g0425261 35.509 383 186 14 16 388 9 340 1.44e-56 196
Msa1349250 MtrunA17_Chr5g0424801 34.465 383 181 13 16 383 9 336 4.82e-56 194
Msa1349250 MtrunA17_Chr2g0277531 33.989 356 166 12 19 362 20 318 4.79e-52 181
Msa1349250 MtrunA17_Chr5g0425661 42.000 200 95 4 18 206 36 225 6.35e-47 165
Msa1349250 MtrunA17_Chr5g0424741 30.754 504 247 19 16 460 9 469 8.19e-47 172
Msa1349250 MtrunA17_Chr8g0356211 31.629 313 163 8 126 438 2 263 3.68e-37 140
Msa1349250 MtrunA17_Chr5g0424791 35.526 152 87 4 63 214 11 151 2.23e-20 88.2
Msa1349250 MtrunA17_Chr5g0425651 41.739 115 60 3 276 386 1 112 8.34e-20 85.5
Msa1349250 MtrunA17_Chr1g0178071 32.099 162 88 5 113 271 71 213 1.35e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349250 AT4G30080.1 53.734 616 229 16 1 602 1 574 0.0 584
Msa1349250 AT2G28350.2 55.786 579 196 16 13 566 4 547 0.0 565
Msa1349250 AT2G28350.1 55.786 579 196 16 13 566 4 547 0.0 565
Msa1349250 AT1G77850.1 38.825 613 298 18 16 598 16 581 2.68e-117 362
Msa1349250 AT1G77850.2 38.825 613 298 18 16 598 16 581 4.19e-117 362
Msa1349250 AT5G37020.2 39.018 387 189 8 13 390 16 364 1.27e-79 268
Msa1349250 AT5G37020.1 39.018 387 189 8 13 390 16 364 3.18e-79 267
Msa1349250 AT1G19220.1 39.163 406 192 11 13 408 17 377 2.48e-78 269
Msa1349250 AT1G30330.3 38.609 417 207 10 9 415 14 391 5.15e-78 266
Msa1349250 AT1G30330.2 38.609 417 207 10 9 415 14 391 5.15e-78 266
Msa1349250 AT1G30330.1 38.107 412 207 9 13 415 17 389 1.09e-77 265
Msa1349250 AT5G20730.3 34.470 528 264 17 13 506 18 497 3.43e-76 264
Msa1349250 AT1G19850.2 39.221 385 179 9 11 382 35 377 7.73e-75 257
Msa1349250 AT1G19850.1 39.221 385 179 9 11 382 46 388 9.60e-75 257
Msa1349250 AT2G33860.1 38.734 395 193 9 15 400 52 406 2.94e-74 249
Msa1349250 AT5G60450.2 36.740 411 201 7 8 400 30 399 3.35e-74 253
Msa1349250 AT5G60450.1 37.157 401 193 7 18 400 64 423 4.87e-73 250
Msa1349250 AT5G62000.2 38.329 407 187 10 13 403 55 413 6.76e-72 248
Msa1349250 AT5G62000.5 38.329 407 187 10 13 403 55 413 6.76e-72 248
Msa1349250 AT5G62000.3 38.329 407 187 10 13 403 55 413 6.76e-72 248
Msa1349250 AT5G62000.1 38.329 407 187 10 13 403 55 413 6.76e-72 248
Msa1349250 AT5G62000.4 38.250 400 197 8 13 403 55 413 9.71e-72 248
Msa1349250 AT5G20730.2 33.460 526 271 16 13 506 18 496 1.20e-70 248
Msa1349250 AT5G20730.1 33.397 527 271 17 13 506 18 497 2.26e-69 244
Msa1349250 AT1G59750.4 38.191 398 197 8 15 403 18 375 1.78e-67 233
Msa1349250 AT1G59750.1 38.191 398 197 8 15 403 18 375 1.78e-67 233
Msa1349250 AT1G59750.3 38.191 398 197 8 15 403 18 375 1.78e-67 233
Msa1349250 AT1G59750.2 38.191 398 197 8 15 403 18 375 1.81e-67 233
Msa1349250 AT2G46530.1 39.314 379 172 13 16 382 18 350 3.00e-66 228
Msa1349250 AT2G46530.3 39.314 379 172 13 16 382 39 371 6.26e-66 228
Msa1349250 AT3G61830.1 36.765 408 197 11 7 403 13 370 1.67e-65 226
Msa1349250 AT4G23980.2 37.406 401 199 11 16 407 9 366 1.70e-64 224
Msa1349250 AT4G23980.1 37.406 401 199 11 16 407 9 366 2.00e-64 224
Msa1349250 AT5G37020.3 37.785 307 151 6 86 390 1 269 4.17e-55 199
Msa1349250 AT1G35520.1 35.990 389 193 12 12 392 20 360 1.23e-54 196
Msa1349250 AT1G34310.1 36.387 382 187 11 19 392 27 360 1.49e-54 196
Msa1349250 AT1G35540.1 35.128 390 203 9 12 395 20 365 3.68e-54 195
Msa1349250 AT3G61830.2 37.644 348 163 10 60 403 22 319 5.54e-54 193
Msa1349250 AT1G35240.1 35.526 380 189 12 12 382 20 352 5.93e-54 194
Msa1349250 AT1G34390.1 34.450 418 209 14 12 421 20 380 2.46e-53 192
Msa1349250 AT2G33860.2 39.437 284 135 5 118 400 2 249 1.02e-52 187
Msa1349250 AT1G34170.1 33.588 393 203 12 19 401 25 369 1.42e-52 188
Msa1349250 AT1G34410.1 35.092 379 192 11 12 382 20 352 3.61e-52 189
Msa1349250 AT2G46530.2 40.520 269 116 8 117 382 36 263 4.25e-48 176
Msa1349250 AT1G34170.2 32.061 393 183 12 19 401 25 343 3.21e-45 167
Msa1349250 AT1G34170.3 32.061 393 183 12 19 401 25 343 2.51e-44 166
Msa1349250 AT1G43950.1 40.654 214 108 7 12 217 20 222 3.61e-38 141
Msa1349250 ATMG00940.1 38.365 159 81 6 205 357 1 148 5.73e-22 93.6
Msa1349250 AT2G36080.1 34.234 111 69 2 112 218 32 142 1.42e-11 65.5
Msa1349250 AT2G36080.3 35.714 112 66 3 112 218 32 142 1.45e-11 65.1
Msa1349250 AT2G36080.4 34.234 111 69 2 112 218 32 142 2.67e-11 63.2
Msa1349250 AT2G36080.2 34.234 111 69 2 112 218 32 142 2.67e-11 63.2
Msa1349250 AT3G25730.1 32.824 131 76 2 118 246 183 303 4.63e-11 65.1
Msa1349250 AT2G46870.1 34.906 106 62 2 110 215 27 125 6.91e-11 64.3

Find 144 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGTTGTTATTGTTAT+TGG 0.155144 tig0010682:-116085 None:intergenic
TTCTAGGATTAGTTGGTTTA+TGG 0.157206 tig0010682:+114912 Msa1349250:CDS
TTTGAAGAAGATTGTTTCTT+TGG 0.183552 tig0010682:+114211 Msa1349250:CDS
ACAAACCTTGGTTTCTTTCT+TGG 0.220376 tig0010682:-115748 None:intergenic
AAATCAGATGGATTATTATT+TGG 0.221410 tig0010682:-115949 None:intergenic
TATTGCATAATTCTTCTATT+AGG 0.232046 tig0010682:+116524 Msa1349250:three_prime_UTR
ACAAAATATGGTTATGGTTA+TGG 0.233884 tig0010682:-116191 None:intergenic
ATTGTTATTGGTACTCTTGT+AGG 0.245330 tig0010682:-116073 None:intergenic
GAGATCTTTGTGTTGGTATA+AGG 0.249926 tig0010682:+114548 Msa1349250:CDS
ACGTAGACTTCATCAGTTTC+AGG 0.253211 tig0010682:-114148 None:intergenic
GAGAGGTGGAACACGGGTTT+TGG 0.257788 tig0010682:-114086 None:intergenic
TGATGCAAAAGAACTATTAT+TGG 0.261306 tig0010682:-115893 None:intergenic
CTACAACAAGACATGTTTCT+TGG 0.267352 tig0010682:+115991 Msa1349250:CDS
TTCTCCTTGGCGCCTTCTTC+AGG 0.267828 tig0010682:+114981 Msa1349250:CDS
TTGTTGAGTGTGGGAAATTC+TGG 0.282323 tig0010682:+116129 Msa1349250:CDS
TTGTTTGGTGGTGGTGGTTC+TGG 0.287312 tig0010682:+114649 Msa1349250:CDS
CAAAATATGGTTATGGTTAT+GGG 0.304272 tig0010682:-116190 None:intergenic
GGAGCCAGGCATGCTCAATT+TGG 0.304628 tig0010682:+115925 Msa1349250:CDS
TTGAAACTGAGGATTCTTCT+AGG 0.307810 tig0010682:+114896 Msa1349250:CDS
TCTAGGATTAGTTGGTTTAT+GGG 0.316818 tig0010682:+114913 Msa1349250:CDS
CCATAAGGAGGCCTAGTTAT+AGG 0.329666 tig0010682:-116048 None:intergenic
AATAGAAGAATTATGCAATA+TGG 0.330857 tig0010682:-116521 None:intergenic
CAAATAACAAAATATGGTTA+TGG 0.347669 tig0010682:-116197 None:intergenic
TGATTTATGAGGTGAAAATA+TGG 0.352018 tig0010682:-115778 None:intergenic
GCTGTAAACTGTGCTGTTAA+TGG 0.368748 tig0010682:+114751 Msa1349250:CDS
TGGAGGCTCTCCTTGGTATA+AGG 0.368842 tig0010682:+116341 Msa1349250:CDS
GTGTGGTTGGATGAGGAAAA+AGG 0.376961 tig0010682:-113850 None:intergenic
CCTATAACTAGGCCTCCTTA+TGG 0.378633 tig0010682:+116048 Msa1349250:CDS
TTCTTTCTTGGAGGTGTGAA+TGG 0.380455 tig0010682:-115736 None:intergenic
TTTCTAATTCTTCTAGTACT+TGG 0.397904 tig0010682:+114611 Msa1349250:CDS
ATGCAAATTCAATGGTGTTC+TGG 0.400255 tig0010682:+114853 Msa1349250:CDS
GGAGAATCAGGCCAACGAAT+TGG 0.402668 tig0010682:-114964 None:intergenic
CTTTGGAAACAATGGCTTAG+AGG 0.405587 tig0010682:+114228 Msa1349250:CDS
AGGATTCTTCTAGGATTAGT+TGG 0.407748 tig0010682:+114905 Msa1349250:CDS
TTCGTTGGCCTGATTCTCCT+TGG 0.409284 tig0010682:+114968 Msa1349250:CDS
TTAGCAATAATTGTTTGAAC+AGG 0.414237 tig0010682:-114379 None:intergenic
AGAGCAAAGAAAGGTGGAAT+TGG 0.414735 tig0010682:+114571 Msa1349250:CDS
AGAAGGCGCCAAGGAGAATC+AGG 0.419546 tig0010682:-114976 None:intergenic
AAATGGTGGTAATGATTTGA+TGG 0.424677 tig0010682:+114699 Msa1349250:CDS
CAACACAAGCCTGATCTTGT+TGG 0.424795 tig0010682:+116369 Msa1349250:CDS
AACCTTGGTTTCTTTCTTGG+AGG 0.432289 tig0010682:-115745 None:intergenic
AAACCCTTTGATGAACTAAA+GGG 0.434794 tig0010682:+116619 Msa1349250:three_prime_UTR
CCATCAGAAGAATTCTCAAC+TGG 0.442393 tig0010682:-116321 None:intergenic
AATGTCTTTGCAAAAGAAGC+TGG 0.444449 tig0010682:-114262 None:intergenic
TTGTTATTGGTACTCTTGTA+GGG 0.448251 tig0010682:-116072 None:intergenic
GAAACCTTAACACAAAATTC+AGG 0.450898 tig0010682:-114814 None:intergenic
TTAAGAATAATTAGCTAGCT+AGG 0.455608 tig0010682:-116461 None:intergenic
TAAACCCTTTGATGAACTAA+AGG 0.456993 tig0010682:+116618 Msa1349250:three_prime_UTR
ATAGTCTCAGCACAGTATCT+AGG 0.458408 tig0010682:-114325 None:intergenic
TGGTCCAAATTGAGCATGCC+TGG 0.458791 tig0010682:-115929 None:intergenic
CTTCTGATGGAGGCTCTCCT+TGG 0.459576 tig0010682:+116334 Msa1349250:CDS
CGTAGACTTCATCAGTTTCA+GGG 0.459745 tig0010682:-114147 None:intergenic
AGATTAATGTTGGAGATTGA+TGG 0.460974 tig0010682:-115826 None:intergenic
TCACCTTTGTTTGGTGGTGG+TGG 0.463200 tig0010682:+114643 Msa1349250:CDS
ATGAATGAATTTCTATATCA+AGG 0.463564 tig0010682:+116712 Msa1349250:three_prime_UTR
CTTGTCTTGTTTGTTGAGTG+TGG 0.463677 tig0010682:+116119 Msa1349250:CDS
AGTGCTTAGATTCACAACTA+TGG 0.464164 tig0010682:+113960 Msa1349250:CDS
AACCGTGTATCACCTTTGTT+TGG 0.470136 tig0010682:+114634 Msa1349250:CDS
AAATGTTACTGCATTGTGTA+TGG 0.470847 tig0010682:+116398 Msa1349250:CDS
TTGAAGGGAATTAAATCAGA+TGG 0.471043 tig0010682:-115961 None:intergenic
GCAATAATTGTTTGAACAGG+TGG 0.472648 tig0010682:-114376 None:intergenic
ATAATTGAGAAGATTAATGT+TGG 0.477845 tig0010682:-115836 None:intergenic
AAGTTTAGACATATCTATAG+AGG 0.484340 tig0010682:+114424 Msa1349250:CDS
AATGGTGAGAGATTGAAGTT+TGG 0.485606 tig0010682:-115718 None:intergenic
TACCCCTTTAGTTCATCAAA+GGG 0.485698 tig0010682:-116622 None:intergenic
GAAAATTCCTCTTCCACTTG+TGG 0.485724 tig0010682:+116677 Msa1349250:three_prime_UTR
CATAATTCCACAAGTGGAAG+AGG 0.488384 tig0010682:-116684 None:intergenic
AATCACAAGAAGCTTGTTGC+TGG 0.491007 tig0010682:+114493 Msa1349250:CDS
AATCTGCAATGCAAATTCAA+TGG 0.492272 tig0010682:+114845 Msa1349250:CDS
GTACTCTTGTAGGGTCCATA+AGG 0.493065 tig0010682:-116063 None:intergenic
GAAGAATCCTCAGTTTCAAA+AGG 0.493790 tig0010682:-114892 None:intergenic
TTGGTAACTTGTCATTGTCA+AGG 0.495636 tig0010682:+116010 Msa1349250:CDS
CATCAAGCATACAGGGAGCC+AGG 0.498276 tig0010682:+115911 Msa1349250:CDS
TTGTTGTAGTAGCTTGTTGA+AGG 0.499531 tig0010682:-115977 None:intergenic
AATTCAGGAGTACTAGCTCT+TGG 0.500520 tig0010682:-114799 None:intergenic
GATTGTTTCTTTGGAAACAA+TGG 0.500964 tig0010682:+114220 Msa1349250:CDS
TATGGATCTTGAACAAACCT+TGG 0.501143 tig0010682:-115760 None:intergenic
TAACTTGTTTAAGGCAATGA+GGG 0.508770 tig0010682:+116655 Msa1349250:three_prime_UTR
GTTTGTGGTTATGGATTCCA+TGG 0.512063 tig0010682:+113922 Msa1349250:CDS
CGTGTATCACCTTTGTTTGG+TGG 0.513472 tig0010682:+114637 Msa1349250:CDS
TTGTCTTGTTTGTTGAGTGT+GGG 0.513483 tig0010682:+116120 Msa1349250:CDS
ATAATATTGTTACCTGAAGA+AGG 0.514309 tig0010682:-114993 None:intergenic
CAACTATGGCACGCATGTGC+TGG 0.516615 tig0010682:+113974 Msa1349250:CDS
TTTGGAAACAATGGCTTAGA+GGG 0.516902 tig0010682:+114229 Msa1349250:CDS
TTACCCCTTTAGTTCATCAA+AGG 0.517930 tig0010682:-116623 None:intergenic
GCATTGGAAGTTGATTTATG+AGG 0.518050 tig0010682:-115789 None:intergenic
AAGAGTGGTTCTGTTTCTGA+AGG 0.520431 tig0010682:+116261 Msa1349250:CDS
AGTTCAAATATTTCAAAGAG+TGG 0.525439 tig0010682:+116246 Msa1349250:CDS
AAGATATGCATGGACAGTGT+TGG 0.525936 tig0010682:+114401 Msa1349250:CDS
GGTGGTTCTGGTTTCTTGTG+TGG 0.526295 tig0010682:+114661 Msa1349250:CDS
GCAAAGAAAGGTGGAATTGG+TGG 0.533246 tig0010682:+114574 Msa1349250:CDS
TAATGATTTGATGGGAAAAG+TGG 0.533977 tig0010682:+114708 Msa1349250:CDS
CCAGTTGAGAATTCTTCTGA+TGG 0.534523 tig0010682:+116321 Msa1349250:CDS
GTATCACCTTTGTTTGGTGG+TGG 0.534706 tig0010682:+114640 Msa1349250:CDS
AGAGAAAGTGAAGGTGTGGT+TGG 0.536093 tig0010682:-113863 None:intergenic
GAAAATGGAGATCTTTGTGT+TGG 0.538803 tig0010682:+114541 Msa1349250:CDS
TTCATAGCAGAGATTCTACA+AGG 0.548674 tig0010682:-114112 None:intergenic
TGTTGTTGATCCTTATACCA+AGG 0.550241 tig0010682:-116351 None:intergenic
AGTGAAGGTGTGGTTGGATG+AGG 0.550919 tig0010682:-113857 None:intergenic
TAGTTACATAATTCCACAAG+TGG 0.556216 tig0010682:-116690 None:intergenic
GTTGTCAAAAGATGTCTCCT+TGG 0.557297 tig0010682:-114451 None:intergenic
AAGAAAGGTGGAATTGGTGG+TGG 0.559157 tig0010682:+114577 Msa1349250:CDS
AAGAGAAAAGAAAAGAAGAG+TGG 0.559701 tig0010682:-113819 None:intergenic
GGTGATGATGATGATGGCAT+TGG 0.562514 tig0010682:-115805 None:intergenic
TTTAACATTGTGGAATGTGA+AGG 0.564248 tig0010682:+116797 Msa1349250:three_prime_UTR
GAGACTAATTCAACTAACCA+AGG 0.569877 tig0010682:-115688 None:intergenic
TTAACTTGTTTAAGGCAATG+AGG 0.574265 tig0010682:+116654 Msa1349250:three_prime_UTR
GCACGCATGTGCTGGTGCCA+TGG 0.574468 tig0010682:+113982 Msa1349250:CDS
ATAAGGAGAGCAAAGAAAGG+TGG 0.575173 tig0010682:+114565 Msa1349250:CDS
TGTTGTAGTAGCTTGTTGAA+GGG 0.575894 tig0010682:-115976 None:intergenic
GGTATAAGGAGAGCAAAGAA+AGG 0.576664 tig0010682:+114562 Msa1349250:CDS
AAAATATGGTTATGGTTATG+GGG 0.588796 tig0010682:-116189 None:intergenic
ATTATTGCTAAAGATATGCA+TGG 0.591151 tig0010682:+114391 Msa1349250:CDS
ATGTTCAAGATCCAATTCGT+TGG 0.592882 tig0010682:+114953 Msa1349250:CDS
GTTGAGAATTCTTCTGATGG+AGG 0.594043 tig0010682:+116324 Msa1349250:CDS
GAGATTCTACAAGGGATGAG+AGG 0.595750 tig0010682:-114103 None:intergenic
TCTGCTGAATAATCCAACCT+AGG 0.603231 tig0010682:-114352 None:intergenic
GCATGTTCTGCATGACCTTG+TGG 0.603875 tig0010682:-114043 None:intergenic
AGACTAATTCAACTAACCAA+GGG 0.605653 tig0010682:-115687 None:intergenic
ATCATCAACAACCTATAACT+AGG 0.606131 tig0010682:+116037 Msa1349250:CDS
ATGTGAAATGTGTAAACCCT+TGG 0.607377 tig0010682:+115671 Msa1349250:CDS
AATCTCTGCTATGAAATACA+TGG 0.608031 tig0010682:+114120 Msa1349250:CDS
AATGGTGGTAATGATTTGAT+GGG 0.610306 tig0010682:+114700 Msa1349250:CDS
TTAACATTGTGGAATGTGAA+GGG 0.613741 tig0010682:+116798 Msa1349250:three_prime_UTR
CTCTTGTAGGGTCCATAAGG+AGG 0.623437 tig0010682:-116060 None:intergenic
AAGGGATGAGAGGTGGAACA+CGG 0.623921 tig0010682:-114093 None:intergenic
GAACCACCACCACCAAACAA+AGG 0.625620 tig0010682:-114646 None:intergenic
CACCAAACAAAGGTGATACA+CGG 0.628457 tig0010682:-114636 None:intergenic
ACACAATCTGATGCAAACAA+TGG 0.631167 tig0010682:+114286 Msa1349250:CDS
ATTCTACAAGGGATGAGAGG+TGG 0.633006 tig0010682:-114100 None:intergenic
AATGATTTGATGGGAAAAGT+GGG 0.635170 tig0010682:+114709 Msa1349250:CDS
ATTGATGGTGATGATGATGA+TGG 0.637177 tig0010682:-115811 None:intergenic
CACCTCCAAGAAAGAAACCA+AGG 0.638580 tig0010682:+115743 Msa1349250:CDS
AACCCTTTGATGAACTAAAG+GGG 0.646968 tig0010682:+116620 Msa1349250:three_prime_UTR
GTTACCTGAAGAAGGCGCCA+AGG 0.651106 tig0010682:-114985 None:intergenic
GAGTGGTGGCATTTGAACCA+TGG 0.651177 tig0010682:-113999 None:intergenic
AGGGATGAGAGGTGGAACAC+GGG 0.668889 tig0010682:-114092 None:intergenic
AAAGTCTTCTACTTTCCACA+AGG 0.669890 tig0010682:+114028 Msa1349250:CDS
TCATAGCAGAGATTCTACAA+GGG 0.672161 tig0010682:-114111 None:intergenic
TCTGATGCAAACAATGGTGG+TGG 0.672693 tig0010682:+114292 Msa1349250:CDS
GTGAAGAGAAAGTGAAGGTG+TGG 0.672989 tig0010682:-113867 None:intergenic
CAATCTGATGCAAACAATGG+TGG 0.683286 tig0010682:+114289 Msa1349250:CDS
TTGTTGTGAAGAGAAAGTGA+AGG 0.712448 tig0010682:-113872 None:intergenic
ATATCTATAGAGGAACACCA+AGG 0.796890 tig0010682:+114434 Msa1349250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTAACTTGTTTA+AGG + tig0010682:116646-116665 Msa1349250:three_prime_UTR 10.0%
!!! TTTTTCCAAATAACAAAATA+TGG - tig0010682:116206-116225 None:intergenic 15.0%
!!! ATTTTTTTTATCATTGTCTT+TGG + tig0010682:116737-116756 Msa1349250:three_prime_UTR 15.0%
!! TAATTTAATTCTTGCTTAAC+AGG - tig0010682:115341-115360 None:intergenic 20.0%
!! TAAGTTTATACCTACTTAAT+TGG + tig0010682:115543-115562 Msa1349250:intron 20.0%
!! ATAATTGAGAAGATTAATGT+TGG - tig0010682:115839-115858 None:intergenic 20.0%
!!! AAATCAGATGGATTATTATT+TGG - tig0010682:115952-115971 None:intergenic 20.0%
!! CAAATAACAAAATATGGTTA+TGG - tig0010682:116200-116219 None:intergenic 20.0%
!!! CATAACCATATTTTGTTATT+TGG + tig0010682:116198-116217 Msa1349250:CDS 20.0%
!! AATAGAAGAATTATGCAATA+TGG - tig0010682:116524-116543 None:intergenic 20.0%
!! TATTGCATAATTCTTCTATT+AGG + tig0010682:116524-116543 Msa1349250:three_prime_UTR 20.0%
!!! TTTTTTTTTGGAACAAAATG+AGG - tig0010682:116570-116589 None:intergenic 20.0%
!! ATGAATGAATTTCTATATCA+AGG + tig0010682:116712-116731 Msa1349250:three_prime_UTR 20.0%
!!! TTTAGCTTTTTTTAACATTG+TGG + tig0010682:116787-116806 Msa1349250:three_prime_UTR 20.0%
! TAAAAAGATGTTTGTGGTTA+TGG + tig0010682:113913-113932 Msa1349250:exon 25.0%
!! TTTGAAGAAGATTGTTTCTT+TGG + tig0010682:114211-114230 Msa1349250:CDS 25.0%
! TTAGCAATAATTGTTTGAAC+AGG - tig0010682:114382-114401 None:intergenic 25.0%
! ATTATTGCTAAAGATATGCA+TGG + tig0010682:114391-114410 Msa1349250:CDS 25.0%
! AAGTTTAGACATATCTATAG+AGG + tig0010682:114424-114443 Msa1349250:CDS 25.0%
! TTTCTAATTCTTCTAGTACT+TGG + tig0010682:114611-114630 Msa1349250:CDS 25.0%
! ATAATATTGTTACCTGAAGA+AGG - tig0010682:114996-115015 None:intergenic 25.0%
! AACTTAATAACTTTCTCTCA+AGG - tig0010682:115529-115548 None:intergenic 25.0%
!!! TTCACATTTTGAAGTAAATC+TGG - tig0010682:115658-115677 None:intergenic 25.0%
! TGATTTATGAGGTGAAAATA+TGG - tig0010682:115781-115800 None:intergenic 25.0%
! TGATGCAAAAGAACTATTAT+TGG - tig0010682:115896-115915 None:intergenic 25.0%
!! CTTAGTGTTGTTATTGTTAT+TGG - tig0010682:116088-116107 None:intergenic 25.0%
!! AAATTCTGGTCAAAGTTTTA+AGG + tig0010682:116143-116162 Msa1349250:CDS 25.0%
! AAAATATGGTTATGGTTATG+GGG - tig0010682:116192-116211 None:intergenic 25.0%
! CAAAATATGGTTATGGTTAT+GGG - tig0010682:116193-116212 None:intergenic 25.0%
! ACAAAATATGGTTATGGTTA+TGG - tig0010682:116194-116213 None:intergenic 25.0%
! AGTTCAAATATTTCAAAGAG+TGG + tig0010682:116246-116265 Msa1349250:CDS 25.0%
!!! AAATGATTTTCAAGACATCA+AGG + tig0010682:116436-116455 Msa1349250:three_prime_UTR 25.0%
! TTAAGAATAATTAGCTAGCT+AGG - tig0010682:116464-116483 None:intergenic 25.0%
! AAAAACAAATCATACAGCAT+AGG - tig0010682:116494-116513 None:intergenic 25.0%
!! TTTTAAGTAGAGATGAAGAC+AGG - tig0010682:113777-113796 None:intergenic 30.0%
AAGAGAAAAGAAAAGAAGAG+TGG - tig0010682:113822-113841 None:intergenic 30.0%
!!! CATCTTTTTAGAACGAAGTA+GGG - tig0010682:113903-113922 None:intergenic 30.0%
!!! ACATCTTTTTAGAACGAAGT+AGG - tig0010682:113904-113923 None:intergenic 30.0%
!! TCGTTCTAAAAAGATGTTTG+TGG + tig0010682:113907-113926 Msa1349250:exon 30.0%
AATCTCTGCTATGAAATACA+TGG + tig0010682:114120-114139 Msa1349250:CDS 30.0%
! TAACTCGTTTTCTCTTAAAG+GGG - tig0010682:114188-114207 None:intergenic 30.0%
! CTAACTCGTTTTCTCTTAAA+GGG - tig0010682:114189-114208 None:intergenic 30.0%
! TCTAACTCGTTTTCTCTTAA+AGG - tig0010682:114190-114209 None:intergenic 30.0%
! GATTGTTTCTTTGGAAACAA+TGG + tig0010682:114220-114239 Msa1349250:CDS 30.0%
GGAAATGACAACAGAAAAAA+TGG + tig0010682:114682-114701 Msa1349250:CDS 30.0%
AATGACAACAGAAAAAATGG+TGG + tig0010682:114685-114704 Msa1349250:CDS 30.0%
! AAATGGTGGTAATGATTTGA+TGG + tig0010682:114699-114718 Msa1349250:CDS 30.0%
! AATGGTGGTAATGATTTGAT+GGG + tig0010682:114700-114719 Msa1349250:CDS 30.0%
TAATGATTTGATGGGAAAAG+TGG + tig0010682:114708-114727 Msa1349250:CDS 30.0%
AATGATTTGATGGGAAAAGT+GGG + tig0010682:114709-114728 Msa1349250:CDS 30.0%
! TGTTAATGGAAGATCTTTTG+AGG + tig0010682:114765-114784 Msa1349250:CDS 30.0%
! TACTCCTGAATTTTGTGTTA+AGG + tig0010682:114810-114829 Msa1349250:CDS 30.0%
GAAACCTTAACACAAAATTC+AGG - tig0010682:114817-114836 None:intergenic 30.0%
AATCTGCAATGCAAATTCAA+TGG + tig0010682:114845-114864 Msa1349250:CDS 30.0%
!! TTCTAGGATTAGTTGGTTTA+TGG + tig0010682:114912-114931 Msa1349250:CDS 30.0%
!! TCTAGGATTAGTTGGTTTAT+GGG + tig0010682:114913-114932 Msa1349250:CDS 30.0%
AATTCAGTGCATCAATAAGA+TGG + tig0010682:115175-115194 Msa1349250:intron 30.0%
TTACTTCAAGCCAATTAAGT+AGG - tig0010682:115556-115575 None:intergenic 30.0%
! TTTATGATGTCATGTTTTCC+AGG + tig0010682:115618-115637 Msa1349250:intron 30.0%
AGACTAATTCAACTAACCAA+GGG - tig0010682:115690-115709 None:intergenic 30.0%
AGATTAATGTTGGAGATTGA+TGG - tig0010682:115829-115848 None:intergenic 30.0%
TTGAAGGGAATTAAATCAGA+TGG - tig0010682:115964-115983 None:intergenic 30.0%
ATCATCAACAACCTATAACT+AGG + tig0010682:116037-116056 Msa1349250:CDS 30.0%
! TTGTTATTGGTACTCTTGTA+GGG - tig0010682:116075-116094 None:intergenic 30.0%
! ATTGTTATTGGTACTCTTGT+AGG - tig0010682:116076-116095 None:intergenic 30.0%
AAATGTTACTGCATTGTGTA+TGG + tig0010682:116398-116417 Msa1349250:CDS 30.0%
TAAACCCTTTGATGAACTAA+AGG + tig0010682:116618-116637 Msa1349250:three_prime_UTR 30.0%
AAACCCTTTGATGAACTAAA+GGG + tig0010682:116619-116638 Msa1349250:three_prime_UTR 30.0%
!! TTAACTTGTTTAAGGCAATG+AGG + tig0010682:116654-116673 Msa1349250:three_prime_UTR 30.0%
!! TAACTTGTTTAAGGCAATGA+GGG + tig0010682:116655-116674 Msa1349250:three_prime_UTR 30.0%
TAGTTACATAATTCCACAAG+TGG - tig0010682:116693-116712 None:intergenic 30.0%
TTTAACATTGTGGAATGTGA+AGG + tig0010682:116797-116816 Msa1349250:three_prime_UTR 30.0%
TTAACATTGTGGAATGTGAA+GGG + tig0010682:116798-116817 Msa1349250:three_prime_UTR 30.0%
TTGTTGTGAAGAGAAAGTGA+AGG - tig0010682:113875-113894 None:intergenic 35.0%
!! CTTTTCAGAGGTTTTTTCCA+TGG - tig0010682:113942-113961 None:intergenic 35.0%
! TGAATCTAAGCACTTTTCAG+AGG - tig0010682:113954-113973 None:intergenic 35.0%
AGTGCTTAGATTCACAACTA+TGG + tig0010682:113960-113979 Msa1349250:CDS 35.0%
! TAGAAGACTTTTGTGTTGAG+TGG - tig0010682:114019-114038 None:intergenic 35.0%
AAAGTCTTCTACTTTCCACA+AGG + tig0010682:114028-114047 Msa1349250:CDS 35.0%
TCATAGCAGAGATTCTACAA+GGG - tig0010682:114114-114133 None:intergenic 35.0%
TTCATAGCAGAGATTCTACA+AGG - tig0010682:114115-114134 None:intergenic 35.0%
TTTGGAAACAATGGCTTAGA+GGG + tig0010682:114229-114248 Msa1349250:CDS 35.0%
AATGTCTTTGCAAAAGAAGC+TGG - tig0010682:114265-114284 None:intergenic 35.0%
ACACAATCTGATGCAAACAA+TGG + tig0010682:114286-114305 Msa1349250:CDS 35.0%
!! TGAGACTATTTTTCCTAGGT+TGG + tig0010682:114339-114358 Msa1349250:CDS 35.0%
GCAATAATTGTTTGAACAGG+TGG - tig0010682:114379-114398 None:intergenic 35.0%
ATATCTATAGAGGAACACCA+AGG + tig0010682:114434-114453 Msa1349250:CDS 35.0%
!! GTGTTTTTGAGAGCAGAAAA+TGG + tig0010682:114526-114545 Msa1349250:CDS 35.0%
GAAAATGGAGATCTTTGTGT+TGG + tig0010682:114541-114560 Msa1349250:CDS 35.0%
! GAGATCTTTGTGTTGGTATA+AGG + tig0010682:114548-114567 Msa1349250:CDS 35.0%
ATGCAAATTCAATGGTGTTC+TGG + tig0010682:114853-114872 Msa1349250:CDS 35.0%
!!! CAAAATGCCTTTTGAAACTG+AGG + tig0010682:114885-114904 Msa1349250:CDS 35.0%
GAAGAATCCTCAGTTTCAAA+AGG - tig0010682:114895-114914 None:intergenic 35.0%
TTGAAACTGAGGATTCTTCT+AGG + tig0010682:114896-114915 Msa1349250:CDS 35.0%
!! AGGATTCTTCTAGGATTAGT+TGG + tig0010682:114905-114924 Msa1349250:CDS 35.0%
ATGTTCAAGATCCAATTCGT+TGG + tig0010682:114953-114972 Msa1349250:CDS 35.0%
CTATGGTAGATAGTACTAGT+AGG - tig0010682:115480-115499 None:intergenic 35.0%
ATTCTAGCAAGTAGCAACTA+TGG - tig0010682:115497-115516 None:intergenic 35.0%
! AGTTGCTACTTGCTAGAATT+TGG + tig0010682:115498-115517 Msa1349250:intron 35.0%
ATGTGAAATGTGTAAACCCT+TGG + tig0010682:115671-115690 Msa1349250:CDS 35.0%
GAGACTAATTCAACTAACCA+AGG - tig0010682:115691-115710 None:intergenic 35.0%
AATGGTGAGAGATTGAAGTT+TGG - tig0010682:115721-115740 None:intergenic 35.0%
ACAAACCTTGGTTTCTTTCT+TGG - tig0010682:115751-115770 None:intergenic 35.0%
TATGGATCTTGAACAAACCT+TGG - tig0010682:115763-115782 None:intergenic 35.0%
! GCATTGGAAGTTGATTTATG+AGG - tig0010682:115792-115811 None:intergenic 35.0%
!! ATTGATGGTGATGATGATGA+TGG - tig0010682:115814-115833 None:intergenic 35.0%
! TTCTTTTGCATCAAGCATAC+AGG + tig0010682:115903-115922 Msa1349250:CDS 35.0%
! TCTTTTGCATCAAGCATACA+GGG + tig0010682:115904-115923 Msa1349250:CDS 35.0%
!! TGTTGTAGTAGCTTGTTGAA+GGG - tig0010682:115979-115998 None:intergenic 35.0%
!! TTGTTGTAGTAGCTTGTTGA+AGG - tig0010682:115980-115999 None:intergenic 35.0%
CTACAACAAGACATGTTTCT+TGG + tig0010682:115991-116010 Msa1349250:CDS 35.0%
! TTGGTAACTTGTCATTGTCA+AGG + tig0010682:116010-116029 Msa1349250:CDS 35.0%
!! TTGTCTTGTTTGTTGAGTGT+GGG + tig0010682:116120-116139 Msa1349250:CDS 35.0%
TGTTGTTGATCCTTATACCA+AGG - tig0010682:116354-116373 None:intergenic 35.0%
! TTTTCTGTTCCAACAAGATC+AGG - tig0010682:116381-116400 None:intergenic 35.0%
AACCCTTTGATGAACTAAAG+GGG + tig0010682:116620-116639 Msa1349250:three_prime_UTR 35.0%
! TACCCCTTTAGTTCATCAAA+GGG - tig0010682:116625-116644 None:intergenic 35.0%
! TTACCCCTTTAGTTCATCAA+AGG - tig0010682:116626-116645 None:intergenic 35.0%
GTTTGTGGTTATGGATTCCA+TGG + tig0010682:113922-113941 Msa1349250:CDS 40.0%
! AAGACTTTTGTGTTGAGTGG+TGG - tig0010682:114016-114035 None:intergenic 40.0%
CGTAGACTTCATCAGTTTCA+GGG - tig0010682:114150-114169 None:intergenic 40.0%
ACGTAGACTTCATCAGTTTC+AGG - tig0010682:114151-114170 None:intergenic 40.0%
! CTTTGGAAACAATGGCTTAG+AGG + tig0010682:114228-114247 Msa1349250:CDS 40.0%
CAATCTGATGCAAACAATGG+TGG + tig0010682:114289-114308 Msa1349250:CDS 40.0%
ATAGTCTCAGCACAGTATCT+AGG - tig0010682:114328-114347 None:intergenic 40.0%
!! GTGCTGAGACTATTTTTCCT+AGG + tig0010682:114335-114354 Msa1349250:CDS 40.0%
TCTGCTGAATAATCCAACCT+AGG - tig0010682:114355-114374 None:intergenic 40.0%
AAGATATGCATGGACAGTGT+TGG + tig0010682:114401-114420 Msa1349250:CDS 40.0%
GTTGTCAAAAGATGTCTCCT+TGG - tig0010682:114454-114473 None:intergenic 40.0%
! AGGAGACATCTTTTGACAAC+TGG + tig0010682:114454-114473 Msa1349250:CDS 40.0%
! GACATCTTTTGACAACTGGT+TGG + tig0010682:114458-114477 Msa1349250:CDS 40.0%
!! AATCACAAGAAGCTTGTTGC+TGG + tig0010682:114493-114512 Msa1349250:CDS 40.0%
GGTATAAGGAGAGCAAAGAA+AGG + tig0010682:114562-114581 Msa1349250:CDS 40.0%
ATAAGGAGAGCAAAGAAAGG+TGG + tig0010682:114565-114584 Msa1349250:CDS 40.0%
AGAGCAAAGAAAGGTGGAAT+TGG + tig0010682:114571-114590 Msa1349250:CDS 40.0%
AACCGTGTATCACCTTTGTT+TGG + tig0010682:114634-114653 Msa1349250:CDS 40.0%
CACCAAACAAAGGTGATACA+CGG - tig0010682:114639-114658 None:intergenic 40.0%
! GCTGTAAACTGTGCTGTTAA+TGG + tig0010682:114751-114770 Msa1349250:CDS 40.0%
!! AATTCAGGAGTACTAGCTCT+TGG - tig0010682:114802-114821 None:intergenic 40.0%
! TCATGTTTTCCAGGTAGTGT+GGG + tig0010682:115627-115646 Msa1349250:intron 40.0%
! TTCTTTCTTGGAGGTGTGAA+TGG - tig0010682:115739-115758 None:intergenic 40.0%
AACCTTGGTTTCTTTCTTGG+AGG - tig0010682:115748-115767 None:intergenic 40.0%
!! CTTGTCTTGTTTGTTGAGTG+TGG + tig0010682:116119-116138 Msa1349250:CDS 40.0%
TTGTTGAGTGTGGGAAATTC+TGG + tig0010682:116129-116148 Msa1349250:CDS 40.0%
! GGGTGCTTTTGCTTCAATAT+TGG - tig0010682:116172-116191 None:intergenic 40.0%
!! AAGAGTGGTTCTGTTTCTGA+AGG + tig0010682:116261-116280 Msa1349250:CDS 40.0%
CCATCAGAAGAATTCTCAAC+TGG - tig0010682:116324-116343 None:intergenic 40.0%
CCAGTTGAGAATTCTTCTGA+TGG + tig0010682:116321-116340 Msa1349250:CDS 40.0%
GTTGAGAATTCTTCTGATGG+AGG + tig0010682:116324-116343 Msa1349250:CDS 40.0%
GAAAATTCCTCTTCCACTTG+TGG + tig0010682:116677-116696 Msa1349250:three_prime_UTR 40.0%
CATAATTCCACAAGTGGAAG+AGG - tig0010682:116687-116706 None:intergenic 40.0%
GTGTGGTTGGATGAGGAAAA+AGG - tig0010682:113853-113872 None:intergenic 45.0%
! AGAGAAAGTGAAGGTGTGGT+TGG - tig0010682:113866-113885 None:intergenic 45.0%
GTGAAGAGAAAGTGAAGGTG+TGG - tig0010682:113870-113889 None:intergenic 45.0%
ATTCTACAAGGGATGAGAGG+TGG - tig0010682:114103-114122 None:intergenic 45.0%
GAGATTCTACAAGGGATGAG+AGG - tig0010682:114106-114125 None:intergenic 45.0%
TCTGATGCAAACAATGGTGG+TGG + tig0010682:114292-114311 Msa1349250:CDS 45.0%
GCAAAGAAAGGTGGAATTGG+TGG + tig0010682:114574-114593 Msa1349250:CDS 45.0%
AAGAAAGGTGGAATTGGTGG+TGG + tig0010682:114577-114596 Msa1349250:CDS 45.0%
! CGTGTATCACCTTTGTTTGG+TGG + tig0010682:114637-114656 Msa1349250:CDS 45.0%
! GTATCACCTTTGTTTGGTGG+TGG + tig0010682:114640-114659 Msa1349250:CDS 45.0%
! GTCATGTTTTCCAGGTAGTG+TGG + tig0010682:115626-115645 Msa1349250:intron 45.0%
CACCTCCAAGAAAGAAACCA+AGG + tig0010682:115743-115762 Msa1349250:CDS 45.0%
!! GGTGATGATGATGATGGCAT+TGG - tig0010682:115808-115827 None:intergenic 45.0%
CCATAAGGAGGCCTAGTTAT+AGG - tig0010682:116051-116070 None:intergenic 45.0%
CCTATAACTAGGCCTCCTTA+TGG + tig0010682:116048-116067 Msa1349250:CDS 45.0%
GTACTCTTGTAGGGTCCATA+AGG - tig0010682:116066-116085 None:intergenic 45.0%
CAACACAAGCCTGATCTTGT+TGG + tig0010682:116369-116388 Msa1349250:CDS 45.0%
!!! ACATAATATTAATTTTTTTT+TGG - tig0010682:116582-116601 None:intergenic 5.0%
! AGTGAAGGTGTGGTTGGATG+AGG - tig0010682:113860-113879 None:intergenic 50.0%
GAGTGGTGGCATTTGAACCA+TGG - tig0010682:114002-114021 None:intergenic 50.0%
GCATGTTCTGCATGACCTTG+TGG - tig0010682:114046-114065 None:intergenic 50.0%
AAGGGATGAGAGGTGGAACA+CGG - tig0010682:114096-114115 None:intergenic 50.0%
!! TCACCTTTGTTTGGTGGTGG+TGG + tig0010682:114643-114662 Msa1349250:CDS 50.0%
GAACCACCACCACCAAACAA+AGG - tig0010682:114649-114668 None:intergenic 50.0%
!! TTGTTTGGTGGTGGTGGTTC+TGG + tig0010682:114649-114668 Msa1349250:CDS 50.0%
!! GGTGGTTCTGGTTTCTTGTG+TGG + tig0010682:114661-114680 Msa1349250:CDS 50.0%
GGAGAATCAGGCCAACGAAT+TGG - tig0010682:114967-114986 None:intergenic 50.0%
! TTCGTTGGCCTGATTCTCCT+TGG + tig0010682:114968-114987 Msa1349250:CDS 50.0%
TGGTCCAAATTGAGCATGCC+TGG - tig0010682:115932-115951 None:intergenic 50.0%
CTCTTGTAGGGTCCATAAGG+AGG - tig0010682:116063-116082 None:intergenic 50.0%
TGGAGGCTCTCCTTGGTATA+AGG + tig0010682:116341-116360 Msa1349250:CDS 50.0%
CAACTATGGCACGCATGTGC+TGG + tig0010682:113974-113993 Msa1349250:CDS 55.0%
! GAGAGGTGGAACACGGGTTT+TGG - tig0010682:114089-114108 None:intergenic 55.0%
AGGGATGAGAGGTGGAACAC+GGG - tig0010682:114095-114114 None:intergenic 55.0%
!! AGAAGGCGCCAAGGAGAATC+AGG - tig0010682:114979-114998 None:intergenic 55.0%
TTCTCCTTGGCGCCTTCTTC+AGG + tig0010682:114981-115000 Msa1349250:CDS 55.0%
!! GTTACCTGAAGAAGGCGCCA+AGG - tig0010682:114988-115007 None:intergenic 55.0%
CTGGTTCATCCCACACTACC+TGG - tig0010682:115639-115658 None:intergenic 55.0%
CATCAAGCATACAGGGAGCC+AGG + tig0010682:115911-115930 Msa1349250:CDS 55.0%
GGAGCCAGGCATGCTCAATT+TGG + tig0010682:115925-115944 Msa1349250:CDS 55.0%
CTTCTGATGGAGGCTCTCCT+TGG + tig0010682:116334-116353 Msa1349250:CDS 55.0%
! GCACGCATGTGCTGGTGCCA+TGG + tig0010682:113982-114001 Msa1349250:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0010682 gene 113736 116830 113736 ID=Msa1349250;Name=Msa1349250
tig0010682 mRNA 113736 116830 113736 ID=Msa1349250-mRNA-1;Parent=Msa1349250;Name=Msa1349250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=184|1|1|1|1|1|2|402|623
tig0010682 exon 113736 115002 113736 ID=Msa1349250-mRNA-1:exon:6802;Parent=Msa1349250-mRNA-1
tig0010682 exon 115640 116830 115640 ID=Msa1349250-mRNA-1:exon:6803;Parent=Msa1349250-mRNA-1
tig0010682 five_prime_UTR 113736 113919 113736 ID=Msa1349250-mRNA-1:five_prime_utr;Parent=Msa1349250-mRNA-1
tig0010682 CDS 113920 115002 113920 ID=Msa1349250-mRNA-1:cds;Parent=Msa1349250-mRNA-1
tig0010682 CDS 115640 116428 115640 ID=Msa1349250-mRNA-1:cds;Parent=Msa1349250-mRNA-1
tig0010682 three_prime_UTR 116429 116830 116429 ID=Msa1349250-mRNA-1:three_prime_utr;Parent=Msa1349250-mRNA-1
Gene Sequence

>Msa1349250

ATGTTTGTGGTTATGGATTCCATGGAAAAAACCTCTGAAAAGTGCTTAGATTCACAACTATGGCACGCATGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTCTACTTTCCACAAGGTCATGCAGAACATGCTCATAACAAAGTAGATTTTTCCAAAACCCGTGTTCCACCTCTCATCCCTTGTAGAATCTCTGCTATGAAATACATGGCAGACCCTGAAACTGATGAAGTCTACGTCAAAATGAAACTAACCCCTTTAAGAGAAAACGAGTTAGATTTTGAAGAAGATTGTTTCTTTGGAAACAATGGCTTAGAGGGTCAAGAAAAGCCAGCTTCTTTTGCAAAGACATTAACACAATCTGATGCAAACAATGGTGGTGGTTTTTCTGTTCCTAGATACTGTGCTGAGACTATTTTTCCTAGGTTGGATTATTCAGCAGAACCACCTGTTCAAACAATTATTGCTAAAGATATGCATGGACAGTGTTGGAAGTTTAGACATATCTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGTAATTTTGTGAATCACAAGAAGCTTGTTGCTGGTGATTCAATTGTGTTTTTGAGAGCAGAAAATGGAGATCTTTGTGTTGGTATAAGGAGAGCAAAGAAAGGTGGAATTGGTGGTGGAACTGATCAGTTTTCTAATTCTTCTAGTACTTGGAACCGTGTATCACCTTTGTTTGGTGGTGGTGGTTCTGGTTTCTTGTGTGGAAATGACAACAGAAAAAATGGTGGTAATGATTTGATGGGAAAAGTGGGAGCTGAATCTGTTGTTGAAGCTGTAAACTGTGCTGTTAATGGAAGATCTTTTGAGGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAGGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCTTTTGAAACTGAGGATTCTTCTAGGATTAGTTGGTTTATGGGAACAATTTCTTCTGTTCATGTTCAAGATCCAATTCGTTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTAGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAACATGCCAAACTTCAATCTCTCACCATTCACACCTCCAAGAAAGAAACCAAGGTTTGTTCAAGATCCATATTTTCACCTCATAAATCAACTTCCAATGCCATCATCATCATCACCATCAATCTCCAACATTAATCTTCTCAATTATACAAAATCTTCTCTCTGTAGCATTCAAGACACTACCAATAATAGTTCTTTTGCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACCAAATAATAATCCATCTGATTTAATTCCCTTCAACAAGCTACTACAACAAGACATGTTTCTTGGTAACTTGTCATTGTCAAGGTTTAATCATCAACAACCTATAACTAGGCCTCCTTATGGACCCTACAAGAGTACCAATAACAATAACAACACTAAGAACAATGTTGACTTGTCTTGTTTGTTGAGTGTGGGAAATTCTGGTCAAAGTTTTAAGGAATCCAATATTGAAGCAAAAGCACCCCATAACCATAACCATATTTTGTTATTTGGAAAAATCATTCACACTGAACAAAACAGTTCAAATATTTCAAAGAGTGGTTCTGTTTCTGAAGGAACTTCTTTGAAAACATCAAATGCTTCTTCTTCTGATCCAGTTGAGAATTCTTCTGATGGAGGCTCTCCTTGGTATAAGGATCAACAACACAAGCCTGATCTTGTTGGAACAGAAAATGTTACTGCATTGTGTATGGCTTCATAA
Protein sequence

>Msa1349250

MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHNKVDFSKTRVPPLIPCRISAMKYMADPETDEVYVKMKLTPLRENELDFEEDCFFGNNGLEGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTDQFSNSSSTWNRVSPLFGGGGSGFLCGNDNRKNGGNDLMGKVGAESVVEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFVQDPYFHLINQLPMPSSSSPSISNINLLNYTKSSLCSIQDTTNNSSFASSIQGARHAQFGPNNNPSDLIPFNKLLQQDMFLGNLSLSRFNHQQPITRPPYGPYKSTNNNNNTKNNVDLSCLLSVGNSGQSFKESNIEAKAPHNHNHILLFGKIIHTEQNSSNISKSGSVSEGTSLKTSNASSSDPVENSSDGGSPWYKDQQHKPDLVGTENVTALCMAS*