AlfalfaGEDB | Msa1353990

M. sativa cultivar zhongmu-4 / Msa1353990

KEGG: K12825
GO: GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904
PFAM: PF01805.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353990	XP_003631017.1	96.429	140	5	0	1	140	1	140	7.53e-86	277

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353990	sp\|Q8RXF1\|SF3A1_ARATH	66.418	134	42	1	2	132	1	134	4.43e-53	181

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353990	G7LCC6	96.429	140	5	0	1	140	1	140	3.60e-86	277

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1353990	Msa1453780	0.820117	8.126083e-53	-8.615850e-47
Msa0661190	Msa1353990	0.819483	1.134100e-52	-8.615850e-47
Msa0993290	Msa1353990	-0.806823	6.821971e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353990	MtrunA17_Chr8g0392311	96.429	140	5	0	1	140	1	140	6.93e-90	277

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353990	AT1G14650.3	66.418	134	42	1	2	132	1	134	4.50e-54	181
Msa1353990	AT1G14650.2	66.418	134	42	1	2	132	1	134	4.50e-54	181
Msa1353990	AT1G14650.1	66.418	134	42	1	2	132	1	134	4.50e-54	181
Msa1353990	AT1G14640.2	48.462	130	61	2	2	127	1	128	7.17e-36	130
Msa1353990	AT1G14640.1	48.462	130	61	2	2	127	1	128	7.17e-36	130
Msa1353990	AT4G16200.1	49.438	89	41	3	55	140	10	97	7.78e-21	85.9
Msa1353990	AT5G06520.1	44.118	68	38	0	56	123	391	458	3.37e-16	74.3
Msa1353990	AT1G18050.1	43.333	60	34	0	63	122	147	206	1.89e-11	59.7

Find 13 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACAACAAACAAAGGGATTT+AGG	0.169216	tig0014195:+1405	None:intergenic
AAATACCTGGACGGAGTTTC+TGG	0.172778	tig0014195:+1293	None:intergenic
ACGGAGTTTCTGGCTGCTTA+TGG	0.260158	tig0014195:+1303	None:intergenic
ACAACAAACAAAGGGATTTA+GGG	0.294222	tig0014195:+1406	None:intergenic
CGGAAAATCGCATGCGGAGT+TGG	0.441516	tig0014195:-1336	Msa1353990:five_prime_UTR
ATTTGAACTCGGAGTGTGAC+CGG	0.485254	tig0014195:-1356	Msa1353990:five_prime_UTR
TAGATAGATACAACAAACAA+AGG	0.551623	tig0014195:+1397	None:intergenic
AGATAGATACAACAAACAAA+GGG	0.561496	tig0014195:+1398	None:intergenic
AGCAGCCAGAAACTCCGTCC+AGG	0.582201	tig0014195:-1298	Msa1353990:intron
GAAACAATTTCATTTGAACT+CGG	0.590042	tig0014195:-1367	Msa1353990:five_prime_UTR
GAGTTTCTGGCTGCTTATGG+CGG	0.608860	tig0014195:+1306	None:intergenic
AGAAAATAGAAATACCTGGA+CGG	0.642191	tig0014195:+1284	None:intergenic
TGTGACCGGAAAATCGCATG+CGG	0.721201	tig0014195:-1342	Msa1353990:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAAACCTAAAAAATCAA+TGG	+	tig0014195:230-249	None:intergenic	15.0%
!!!	AATAGTATTAGATTTTGTTT+GGG	+	tig0014195:465-484	None:intergenic	15.0%
!!!	AAATAGTATTAGATTTTGTT+TGG	+	tig0014195:466-485	None:intergenic	15.0%
!!!	TTGTATATTAACATTTTTGA+AGG	+	tig0014195:626-645	None:intergenic	15.0%
!!	ATAAAAACCTAAAAAATCAA+TGG	+	tig0014195:230-249	None:intergenic	15.0%
!!!	AATAGTATTAGATTTTGTTT+GGG	+	tig0014195:465-484	None:intergenic	15.0%
!!!	AAATAGTATTAGATTTTGTT+TGG	+	tig0014195:466-485	None:intergenic	15.0%
!!!	TTGTATATTAACATTTTTGA+AGG	+	tig0014195:626-645	None:intergenic	15.0%
!!	AATTAGAAAATAGAAATACC+TGG	+	tig0014195:143-162	None:intergenic	20.0%
!!	TTAAGAACTTATATTGTTCT+AGG	+	tig0014195:440-459	None:intergenic	20.0%
!!	TTATTATACGTGTTACATTA+TGG	+	tig0014195:703-722	None:intergenic	20.0%
!!!	TTTCATTTTGTAGGTTTTTA+AGG	-	tig0014195:991-1010	Msa1353990:intron	20.0%
!!!	TTCATTTTGTAGGTTTTTAA+GGG	-	tig0014195:992-1011	Msa1353990:intron	20.0%
!!!	ATTTAGGGTTTTAATTCTTT+AGG	+	tig0014195:2-21	None:intergenic	20.0%
!!	AATTAGAAAATAGAAATACC+TGG	+	tig0014195:143-162	None:intergenic	20.0%
!!	TTAAGAACTTATATTGTTCT+AGG	+	tig0014195:440-459	None:intergenic	20.0%
!!	TTATTATACGTGTTACATTA+TGG	+	tig0014195:703-722	None:intergenic	20.0%
!!!	TTTCATTTTGTAGGTTTTTA+AGG	-	tig0014195:991-1010	Msa1353990:intron	20.0%
!!!	TTCATTTTGTAGGTTTTTAA+GGG	-	tig0014195:992-1011	Msa1353990:intron	20.0%
!	AGATAGATACAACAAACAAA+GGG	+	tig0014195:25-44	None:intergenic	25.0%
!	TAGATAGATACAACAAACAA+AGG	+	tig0014195:26-45	None:intergenic	25.0%
!	GAAACAATTTCATTTGAACT+CGG	-	tig0014195:53-72	Msa1353990:CDS	25.0%
!!!	CAGAATTCCATTGATTTTTT+AGG	-	tig0014195:220-239	Msa1353990:CDS	25.0%
!!!	ACTTTTGCTATAGAAATTTG+TGG	+	tig0014195:321-340	None:intergenic	25.0%
!	TAAGTTATGTGAGACTTATT+GGG	+	tig0014195:390-409	None:intergenic	25.0%
!	ATAAGTTATGTGAGACTTAT+TGG	+	tig0014195:391-410	None:intergenic	25.0%
!	AGAGAATCAATATTCATTGA+GGG	+	tig0014195:566-585	None:intergenic	25.0%
!	AAGAGAATCAATATTCATTG+AGG	+	tig0014195:567-586	None:intergenic	25.0%
!!	ACTTTCTGTTTTCATTTTGT+AGG	-	tig0014195:982-1001	Msa1353990:intron	25.0%
!	AGATAGATACAACAAACAAA+GGG	+	tig0014195:25-44	None:intergenic	25.0%
!	TAGATAGATACAACAAACAA+AGG	+	tig0014195:26-45	None:intergenic	25.0%
!	GAAACAATTTCATTTGAACT+CGG	-	tig0014195:53-72	Msa1353990:CDS	25.0%
!!!	CAGAATTCCATTGATTTTTT+AGG	-	tig0014195:220-239	Msa1353990:CDS	25.0%
!!!	ACTTTTGCTATAGAAATTTG+TGG	+	tig0014195:321-340	None:intergenic	25.0%
!	TAAGTTATGTGAGACTTATT+GGG	+	tig0014195:390-409	None:intergenic	25.0%
!	ATAAGTTATGTGAGACTTAT+TGG	+	tig0014195:391-410	None:intergenic	25.0%
!	AGAGAATCAATATTCATTGA+GGG	+	tig0014195:566-585	None:intergenic	25.0%
!	AAGAGAATCAATATTCATTG+AGG	+	tig0014195:567-586	None:intergenic	25.0%
!!	ACTTTCTGTTTTCATTTTGT+AGG	-	tig0014195:982-1001	Msa1353990:intron	25.0%
	ACAACAAACAAAGGGATTTA+GGG	+	tig0014195:17-36	None:intergenic	30.0%
	TACAACAAACAAAGGGATTT+AGG	+	tig0014195:18-37	None:intergenic	30.0%
	AGAAAATAGAAATACCTGGA+CGG	+	tig0014195:139-158	None:intergenic	30.0%
	AGACTTCATTGATCTGATAA+CGG	-	tig0014195:269-288	Msa1353990:CDS	30.0%
!!	TTGTTCTAGGATCAATTAAG+TGG	+	tig0014195:427-446	None:intergenic	30.0%
	TTATACGTGTTACATTATGG+CGG	+	tig0014195:700-719	None:intergenic	30.0%
	TGAAAACAGAAAGTTAGAAC+TGG	+	tig0014195:976-995	None:intergenic	30.0%
!	TCAACAATGTTTCTAATGTC+TGG	+	tig0014195:1213-1232	None:intergenic	30.0%
	TGGATTGAGGAAATTAAACT+TGG	+	tig0014195:1310-1329	None:intergenic	30.0%
	ATAATATGCATGATAGGGAT+CGG	+	tig0014195:1334-1353	None:intergenic	30.0%
	TGCTGATAATATGCATGATA+GGG	+	tig0014195:1339-1358	None:intergenic	30.0%
	ACAACAAACAAAGGGATTTA+GGG	+	tig0014195:17-36	None:intergenic	30.0%
	TACAACAAACAAAGGGATTT+AGG	+	tig0014195:18-37	None:intergenic	30.0%
	AGAAAATAGAAATACCTGGA+CGG	+	tig0014195:139-158	None:intergenic	30.0%
	AGACTTCATTGATCTGATAA+CGG	-	tig0014195:269-288	Msa1353990:CDS	30.0%
!!	TTGTTCTAGGATCAATTAAG+TGG	+	tig0014195:427-446	None:intergenic	30.0%
	TTATACGTGTTACATTATGG+CGG	+	tig0014195:700-719	None:intergenic	30.0%
	TGAAAACAGAAAGTTAGAAC+TGG	+	tig0014195:976-995	None:intergenic	30.0%
!	TCAACAATGTTTCTAATGTC+TGG	+	tig0014195:1213-1232	None:intergenic	30.0%
	TGGATTGAGGAAATTAAACT+TGG	+	tig0014195:1310-1329	None:intergenic	30.0%
	ATAATATGCATGATAGGGAT+CGG	+	tig0014195:1334-1353	None:intergenic	30.0%
	TGCTGATAATATGCATGATA+GGG	+	tig0014195:1339-1358	None:intergenic	30.0%
	CAAGGTAAAAGGTAAGAGAA+AGG	+	tig0014195:168-187	None:intergenic	35.0%
	GACTTCATTGATCTGATAAC+GGG	-	tig0014195:270-289	Msa1353990:CDS	35.0%
!!	TTTAAGTGAAAGCGTTTGGT+TGG	+	tig0014195:509-528	None:intergenic	35.0%
!!	ACTGTTTAAGTGAAAGCGTT+TGG	+	tig0014195:513-532	None:intergenic	35.0%
	TCCAAAAACCGAACAAATAG+TGG	-	tig0014195:868-887	Msa1353990:intron	35.0%
!	ACCACTATTTGTTCGGTTTT+TGG	+	tig0014195:872-891	None:intergenic	35.0%
	TTAACCATAGTAGTCAATCC+TGG	+	tig0014195:937-956	None:intergenic	35.0%
!	TAAGGGATTCTGATGATGTT+AGG	-	tig0014195:1009-1028	Msa1353990:intron	35.0%
!	AATGTTTCTAATGTCTGGAG+GGG	+	tig0014195:1208-1227	None:intergenic	35.0%
!	CAATGTTTCTAATGTCTGGA+GGG	+	tig0014195:1209-1228	None:intergenic	35.0%
!	ACAATGTTTCTAATGTCTGG+AGG	+	tig0014195:1210-1229	None:intergenic	35.0%
!	ATGGTCTTGAATTCGAAAAG+AGG	-	tig0014195:1259-1278	Msa1353990:intron	35.0%
	GAGGATTATTGCTAGTAATG+CGG	-	tig0014195:1278-1297	Msa1353990:intron	35.0%
	AGGATTATTGCTAGTAATGC+GGG	-	tig0014195:1279-1298	Msa1353990:intron	35.0%
!	GTGCTGATAATATGCATGAT+AGG	+	tig0014195:1340-1359	None:intergenic	35.0%
	ATCATGCATATTATCAGCAC+AGG	-	tig0014195:1340-1359	Msa1353990:five_prime_UTR	35.0%
	AATCTTCTACTCAACAACCT+GGG	-	tig0014195:1388-1407	Msa1353990:five_prime_UTR	35.0%
	CAAGGTAAAAGGTAAGAGAA+AGG	+	tig0014195:168-187	None:intergenic	35.0%
	GACTTCATTGATCTGATAAC+GGG	-	tig0014195:270-289	Msa1353990:CDS	35.0%
!!	TTTAAGTGAAAGCGTTTGGT+TGG	+	tig0014195:509-528	None:intergenic	35.0%
!!	ACTGTTTAAGTGAAAGCGTT+TGG	+	tig0014195:513-532	None:intergenic	35.0%
	TCCAAAAACCGAACAAATAG+TGG	-	tig0014195:868-887	Msa1353990:intron	35.0%
!	ACCACTATTTGTTCGGTTTT+TGG	+	tig0014195:872-891	None:intergenic	35.0%
	TTAACCATAGTAGTCAATCC+TGG	+	tig0014195:937-956	None:intergenic	35.0%
!	TAAGGGATTCTGATGATGTT+AGG	-	tig0014195:1009-1028	Msa1353990:intron	35.0%
!	AATGTTTCTAATGTCTGGAG+GGG	+	tig0014195:1208-1227	None:intergenic	35.0%
!	CAATGTTTCTAATGTCTGGA+GGG	+	tig0014195:1209-1228	None:intergenic	35.0%
!	ACAATGTTTCTAATGTCTGG+AGG	+	tig0014195:1210-1229	None:intergenic	35.0%
!	ATGGTCTTGAATTCGAAAAG+AGG	-	tig0014195:1259-1278	Msa1353990:intron	35.0%
	GAGGATTATTGCTAGTAATG+CGG	-	tig0014195:1278-1297	Msa1353990:intron	35.0%
	AGGATTATTGCTAGTAATGC+GGG	-	tig0014195:1279-1298	Msa1353990:intron	35.0%
!	GTGCTGATAATATGCATGAT+AGG	+	tig0014195:1340-1359	None:intergenic	35.0%
	ATCATGCATATTATCAGCAC+AGG	-	tig0014195:1340-1359	Msa1353990:five_prime_UTR	35.0%
	AATCTTCTACTCAACAACCT+GGG	-	tig0014195:1388-1407	Msa1353990:five_prime_UTR	35.0%
	TGGAATCGCATCAAGGTAAA+AGG	+	tig0014195:179-198	None:intergenic	40.0%
	CGGTATGACCACTATTTGTT+CGG	+	tig0014195:879-898	None:intergenic	40.0%
	AAAAGGGGGATAGTGTATAG+CGG	+	tig0014195:899-918	None:intergenic	40.0%
!	CTATACACTATCCCCCTTTT+GGG	-	tig0014195:899-918	Msa1353990:intron	40.0%
!	TATACACTATCCCCCTTTTG+GGG	-	tig0014195:900-919	Msa1353990:intron	40.0%
	TAGTAGTCAATCCTGGATAG+CGG	+	tig0014195:930-949	None:intergenic	40.0%
	CTATCCAGGATTGACTACTA+TGG	-	tig0014195:930-949	Msa1353990:intron	40.0%
!!	TCCTATAGTTCTAGTGTGTG+TGG	+	tig0014195:1175-1194	None:intergenic	40.0%
!	ATGTTTCTAATGTCTGGAGG+GGG	+	tig0014195:1207-1226	None:intergenic	40.0%
	ATTCTTAGCAACGAACTGAG+AGG	+	tig0014195:1241-1260	None:intergenic	40.0%
	TCTCAGTTCGTTGCTAAGAA+TGG	-	tig0014195:1240-1259	Msa1353990:intron	40.0%
	CAATCTTCTACTCAACAACC+TGG	-	tig0014195:1387-1406	Msa1353990:five_prime_UTR	40.0%
	ATCTTCTACTCAACAACCTG+GGG	-	tig0014195:1389-1408	Msa1353990:five_prime_UTR	40.0%
	TGGAATCGCATCAAGGTAAA+AGG	+	tig0014195:179-198	None:intergenic	40.0%
	CGGTATGACCACTATTTGTT+CGG	+	tig0014195:879-898	None:intergenic	40.0%
	AAAAGGGGGATAGTGTATAG+CGG	+	tig0014195:899-918	None:intergenic	40.0%
!	CTATACACTATCCCCCTTTT+GGG	-	tig0014195:899-918	Msa1353990:intron	40.0%
!	TATACACTATCCCCCTTTTG+GGG	-	tig0014195:900-919	Msa1353990:intron	40.0%
	TAGTAGTCAATCCTGGATAG+CGG	+	tig0014195:930-949	None:intergenic	40.0%
	CTATCCAGGATTGACTACTA+TGG	-	tig0014195:930-949	Msa1353990:intron	40.0%
!!	TCCTATAGTTCTAGTGTGTG+TGG	+	tig0014195:1175-1194	None:intergenic	40.0%
!	ATGTTTCTAATGTCTGGAGG+GGG	+	tig0014195:1207-1226	None:intergenic	40.0%
	ATTCTTAGCAACGAACTGAG+AGG	+	tig0014195:1241-1260	None:intergenic	40.0%
	TCTCAGTTCGTTGCTAAGAA+TGG	-	tig0014195:1240-1259	Msa1353990:intron	40.0%
	CAATCTTCTACTCAACAACC+TGG	-	tig0014195:1387-1406	Msa1353990:five_prime_UTR	40.0%
	ATCTTCTACTCAACAACCTG+GGG	-	tig0014195:1389-1408	Msa1353990:five_prime_UTR	40.0%
	ATTTGAACTCGGAGTGTGAC+CGG	-	tig0014195:64-83	Msa1353990:CDS	45.0%
	AAATACCTGGACGGAGTTTC+TGG	+	tig0014195:130-149	None:intergenic	45.0%
	AACGCCTTATCCCACTAAGT+GGG	-	tig0014195:653-672	Msa1353990:intron	45.0%
!	GCTATACACTATCCCCCTTT+TGG	-	tig0014195:898-917	Msa1353990:intron	45.0%
	GGGTAAAGGCAGTATAGGTA+AGG	+	tig0014195:1037-1056	None:intergenic	45.0%
	GCCACACACACTAGAACTAT+AGG	-	tig0014195:1171-1190	Msa1353990:intron	45.0%
!	TGTTTCTAATGTCTGGAGGG+GGG	+	tig0014195:1206-1225	None:intergenic	45.0%
	TATGCATGATAGGGATCGGA+TGG	+	tig0014195:1330-1349	None:intergenic	45.0%
	ATTTGAACTCGGAGTGTGAC+CGG	-	tig0014195:64-83	Msa1353990:CDS	45.0%
	AAATACCTGGACGGAGTTTC+TGG	+	tig0014195:130-149	None:intergenic	45.0%
	AACGCCTTATCCCACTAAGT+GGG	-	tig0014195:653-672	Msa1353990:intron	45.0%
!	GCTATACACTATCCCCCTTT+TGG	-	tig0014195:898-917	Msa1353990:intron	45.0%
	GGGTAAAGGCAGTATAGGTA+AGG	+	tig0014195:1037-1056	None:intergenic	45.0%
	GCCACACACACTAGAACTAT+AGG	-	tig0014195:1171-1190	Msa1353990:intron	45.0%
!	TGTTTCTAATGTCTGGAGGG+GGG	+	tig0014195:1206-1225	None:intergenic	45.0%
	TATGCATGATAGGGATCGGA+TGG	+	tig0014195:1330-1349	None:intergenic	45.0%
	TGTGACCGGAAAATCGCATG+CGG	-	tig0014195:78-97	Msa1353990:CDS	50.0%
!	CAACTCCGCATGCGATTTTC+CGG	+	tig0014195:86-105	None:intergenic	50.0%
!!	GAGTTTCTGGCTGCTTATGG+CGG	+	tig0014195:117-136	None:intergenic	50.0%
!!	ACGGAGTTTCTGGCTGCTTA+TGG	+	tig0014195:120-139	None:intergenic	50.0%
	ATCGCGATGGAATCGCATCA+AGG	+	tig0014195:186-205	None:intergenic	50.0%
	TGCGATTCCATCGCGATTTG+CGG	-	tig0014195:189-208	Msa1353990:CDS	50.0%
	GTTTGGTTGGAGCAGATCAG+CGG	+	tig0014195:496-515	None:intergenic	50.0%
!	AGCACAGAGAGCATGTACAC+TGG	+	tig0014195:542-561	None:intergenic	50.0%
	CAACGCCTTATCCCACTAAG+TGG	-	tig0014195:652-671	Msa1353990:intron	50.0%
	ACGCCTTATCCCACTAAGTG+GGG	-	tig0014195:654-673	Msa1353990:intron	50.0%
	CTTATCCCACTAAGTGGGGT+CGG	-	tig0014195:658-677	Msa1353990:intron	50.0%
	ATTTCCATCAGTGGGAGGAG+CGG	+	tig0014195:1058-1077	None:intergenic	50.0%
	CCAAGATTTCCATCAGTGGG+AGG	+	tig0014195:1063-1082	None:intergenic	50.0%
	CCTCCCACTGATGGAAATCT+TGG	-	tig0014195:1060-1079	Msa1353990:intron	50.0%
	GGGCCAAGATTTCCATCAGT+GGG	+	tig0014195:1066-1085	None:intergenic	50.0%
	AGGGCCAAGATTTCCATCAG+TGG	+	tig0014195:1067-1086	None:intergenic	50.0%
!	CTTGAGTGAGTTGAGCCTCA+GGG	+	tig0014195:1092-1111	None:intergenic	50.0%
!	TCTTGAGTGAGTTGAGCCTC+AGG	+	tig0014195:1093-1112	None:intergenic	50.0%
	TGAGGCTCAACTCACTCAAG+AGG	-	tig0014195:1092-1111	Msa1353990:intron	50.0%
	TCAACTCACTCAAGAGGAGG+TGG	-	tig0014195:1098-1117	Msa1353990:intron	50.0%
	GAATGAGAGATCCTCCATCG+AGG	-	tig0014195:1128-1147	Msa1353990:intron	50.0%
!	TGTCGGTGTTTCTTCCTCGA+TGG	+	tig0014195:1145-1164	None:intergenic	50.0%
	GTGTGTGTGGCAACAGTTGT+CGG	+	tig0014195:1162-1181	None:intergenic	50.0%
!!	GATAGGGATCGGATGGATTG+AGG	+	tig0014195:1323-1342	None:intergenic	50.0%
	TCTAGTAGAGCAGAATCCCC+AGG	+	tig0014195:1408-1427	None:intergenic	50.0%
	TGTGACCGGAAAATCGCATG+CGG	-	tig0014195:78-97	Msa1353990:CDS	50.0%
!	CAACTCCGCATGCGATTTTC+CGG	+	tig0014195:86-105	None:intergenic	50.0%
!!	GAGTTTCTGGCTGCTTATGG+CGG	+	tig0014195:117-136	None:intergenic	50.0%
!!	ACGGAGTTTCTGGCTGCTTA+TGG	+	tig0014195:120-139	None:intergenic	50.0%
	ATCGCGATGGAATCGCATCA+AGG	+	tig0014195:186-205	None:intergenic	50.0%
	TGCGATTCCATCGCGATTTG+CGG	-	tig0014195:189-208	Msa1353990:CDS	50.0%
	GTTTGGTTGGAGCAGATCAG+CGG	+	tig0014195:496-515	None:intergenic	50.0%
!	AGCACAGAGAGCATGTACAC+TGG	+	tig0014195:542-561	None:intergenic	50.0%
	CAACGCCTTATCCCACTAAG+TGG	-	tig0014195:652-671	Msa1353990:intron	50.0%
	ACGCCTTATCCCACTAAGTG+GGG	-	tig0014195:654-673	Msa1353990:intron	50.0%
	CTTATCCCACTAAGTGGGGT+CGG	-	tig0014195:658-677	Msa1353990:intron	50.0%
	ATTTCCATCAGTGGGAGGAG+CGG	+	tig0014195:1058-1077	None:intergenic	50.0%
	CCAAGATTTCCATCAGTGGG+AGG	+	tig0014195:1063-1082	None:intergenic	50.0%
	CCTCCCACTGATGGAAATCT+TGG	-	tig0014195:1060-1079	Msa1353990:intron	50.0%
	GGGCCAAGATTTCCATCAGT+GGG	+	tig0014195:1066-1085	None:intergenic	50.0%
	AGGGCCAAGATTTCCATCAG+TGG	+	tig0014195:1067-1086	None:intergenic	50.0%
!	CTTGAGTGAGTTGAGCCTCA+GGG	+	tig0014195:1092-1111	None:intergenic	50.0%
!	TCTTGAGTGAGTTGAGCCTC+AGG	+	tig0014195:1093-1112	None:intergenic	50.0%
	TGAGGCTCAACTCACTCAAG+AGG	-	tig0014195:1092-1111	Msa1353990:intron	50.0%
	TCAACTCACTCAAGAGGAGG+TGG	-	tig0014195:1098-1117	Msa1353990:intron	50.0%
	GAATGAGAGATCCTCCATCG+AGG	-	tig0014195:1128-1147	Msa1353990:intron	50.0%
!	TGTCGGTGTTTCTTCCTCGA+TGG	+	tig0014195:1145-1164	None:intergenic	50.0%
	GTGTGTGTGGCAACAGTTGT+CGG	+	tig0014195:1162-1181	None:intergenic	50.0%
!!	GATAGGGATCGGATGGATTG+AGG	+	tig0014195:1323-1342	None:intergenic	50.0%
	TCTAGTAGAGCAGAATCCCC+AGG	+	tig0014195:1408-1427	None:intergenic	50.0%
	CGGAAAATCGCATGCGGAGT+TGG	-	tig0014195:84-103	Msa1353990:CDS	55.0%
!	TCTGAAGCCGCAAATCGCGA+TGG	+	tig0014195:199-218	None:intergenic	55.0%
	CGACCCCACTTAGTGGGATA+AGG	+	tig0014195:660-679	None:intergenic	55.0%
	TGTAGCCGACCCCACTTAGT+GGG	+	tig0014195:666-685	None:intergenic	55.0%
	ATGTAGCCGACCCCACTTAG+TGG	+	tig0014195:667-686	None:intergenic	55.0%
	ACTAAGTGGGGTCGGCTACA+TGG	-	tig0014195:666-685	Msa1353990:intron	55.0%
	ATAGCGGCTGACCCCAAAAG+GGG	+	tig0014195:914-933	None:intergenic	55.0%
!	GATAGCGGCTGACCCCAAAA+GGG	+	tig0014195:915-934	None:intergenic	55.0%
	GGAGCGGGTAAAGGCAGTAT+AGG	+	tig0014195:1042-1061	None:intergenic	55.0%
	TTTCCATCAGTGGGAGGAGC+GGG	+	tig0014195:1057-1076	None:intergenic	55.0%
	AAATCTTGGCCCTCTCCCTG+AGG	-	tig0014195:1074-1093	Msa1353990:intron	55.0%
!	TGAGTTGAGCCTCAGGGAGA+GGG	+	tig0014195:1086-1105	None:intergenic	55.0%
	GGCTCAACTCACTCAAGAGG+AGG	-	tig0014195:1095-1114	Msa1353990:intron	55.0%
	ACTCACTCAAGAGGAGGTGG+AGG	-	tig0014195:1101-1120	Msa1353990:intron	55.0%
	CGGTGTTTCTTCCTCGATGG+AGG	+	tig0014195:1142-1161	None:intergenic	55.0%
	CGGAAAATCGCATGCGGAGT+TGG	-	tig0014195:84-103	Msa1353990:CDS	55.0%
!	TCTGAAGCCGCAAATCGCGA+TGG	+	tig0014195:199-218	None:intergenic	55.0%
	CGACCCCACTTAGTGGGATA+AGG	+	tig0014195:660-679	None:intergenic	55.0%
	TGTAGCCGACCCCACTTAGT+GGG	+	tig0014195:666-685	None:intergenic	55.0%
	ATGTAGCCGACCCCACTTAG+TGG	+	tig0014195:667-686	None:intergenic	55.0%
	ACTAAGTGGGGTCGGCTACA+TGG	-	tig0014195:666-685	Msa1353990:intron	55.0%
	ATAGCGGCTGACCCCAAAAG+GGG	+	tig0014195:914-933	None:intergenic	55.0%
!	GATAGCGGCTGACCCCAAAA+GGG	+	tig0014195:915-934	None:intergenic	55.0%
	GGAGCGGGTAAAGGCAGTAT+AGG	+	tig0014195:1042-1061	None:intergenic	55.0%
	TTTCCATCAGTGGGAGGAGC+GGG	+	tig0014195:1057-1076	None:intergenic	55.0%
	AAATCTTGGCCCTCTCCCTG+AGG	-	tig0014195:1074-1093	Msa1353990:intron	55.0%
!	TGAGTTGAGCCTCAGGGAGA+GGG	+	tig0014195:1086-1105	None:intergenic	55.0%
	GGCTCAACTCACTCAAGAGG+AGG	-	tig0014195:1095-1114	Msa1353990:intron	55.0%
	ACTCACTCAAGAGGAGGTGG+AGG	-	tig0014195:1101-1120	Msa1353990:intron	55.0%
	CGGTGTTTCTTCCTCGATGG+AGG	+	tig0014195:1142-1161	None:intergenic	55.0%
	AGCAGCCAGAAACTCCGTCC+AGG	-	tig0014195:122-141	Msa1353990:CDS	60.0%
	TAGCGGCTGACCCCAAAAGG+GGG	+	tig0014195:913-932	None:intergenic	60.0%
!	GGATAGCGGCTGACCCCAAA+AGG	+	tig0014195:916-935	None:intergenic	60.0%
!	TTTGGGGTCAGCCGCTATCC+AGG	-	tig0014195:916-935	Msa1353990:intron	60.0%
	TCAGTGGGAGGAGCGGGTAA+AGG	+	tig0014195:1051-1070	None:intergenic	60.0%
	TTACCCGCTCCTCCCACTGA+TGG	-	tig0014195:1051-1070	Msa1353990:intron	60.0%
!	GTGAGTTGAGCCTCAGGGAG+AGG	+	tig0014195:1087-1106	None:intergenic	60.0%
	CTCAAGAGGAGGTGGAGGAG+AGG	-	tig0014195:1106-1125	Msa1353990:intron	60.0%
	AGCAGCCAGAAACTCCGTCC+AGG	-	tig0014195:122-141	Msa1353990:CDS	60.0%
	TAGCGGCTGACCCCAAAAGG+GGG	+	tig0014195:913-932	None:intergenic	60.0%
!	GGATAGCGGCTGACCCCAAA+AGG	+	tig0014195:916-935	None:intergenic	60.0%
!	TTTGGGGTCAGCCGCTATCC+AGG	-	tig0014195:916-935	Msa1353990:intron	60.0%
	TCAGTGGGAGGAGCGGGTAA+AGG	+	tig0014195:1051-1070	None:intergenic	60.0%
	TTACCCGCTCCTCCCACTGA+TGG	-	tig0014195:1051-1070	Msa1353990:intron	60.0%
!	GTGAGTTGAGCCTCAGGGAG+AGG	+	tig0014195:1087-1106	None:intergenic	60.0%
	CTCAAGAGGAGGTGGAGGAG+AGG	-	tig0014195:1106-1125	Msa1353990:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
tig0014195	gene	2	1440	2	ID=Msa1353990;Name=Msa1353990
tig0014195	mRNA	2	1440	2	ID=Msa1353990-mRNA-1;Parent=Msa1353990;Name=Msa1353990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=159\|1\|0.5\|1\|0\|0\|2\|0\|140
tig0014195	exon	2	438	2	ID=Msa1353990-mRNA-1:exon:8916;Parent=Msa1353990-mRNA-1
tig0014195	exon	1299	1440	1299	ID=Msa1353990-mRNA-1:exon:8915;Parent=Msa1353990-mRNA-1
tig0014195	five_prime_UTR	1299	1440	1299	ID=Msa1353990-mRNA-1:five_prime_utr;Parent=Msa1353990-mRNA-1
tig0014195	five_prime_UTR	422	438	422	ID=Msa1353990-mRNA-1:five_prime_utr;Parent=Msa1353990-mRNA-1
tig0014195	CDS	2	421	2	ID=Msa1353990-mRNA-1:cds;Parent=Msa1353990-mRNA-1

Gene Sequence

>Msa1353990

ATGATGTTAGGTTCCTTACCTATACTGCCTTTACCCGCTCCTCCCACTGATGGAAATCTTGGCCCTCTCCCTGAGGCTCAACTCACTCAAGAGGAGGTGGAGGAGAGGAATGAGAGATCCTCCATCGAGGAAGAAACACCGACAACTGTTGCCACACACACTAGAACTATAGGAATAATTCACCCCCCTCCAGACATTAGAAACATTGTTGATAAAACCTCTCAGTTCGTTGCTAAGAATGGTCTTGAATTCGAAAAGAGGATTATTGCTAGTAATGCGGGCAATGCCAAGTTTAATTTCCTCAATCCATCCGATCCCTATCATGCATATTATCAGCACAGGCTTTCTGAGTTTCGTAGTCAGAATCAATCTTCTACTCAACAACCTGGGGATTCTGCTCTACTAGAATCAGCTCCACCT

Protein sequence

>Msa1353990

MMLGSLPILPLPAPPTDGNLGPLPEAQLTQEEVEERNERSSIEEETPTTVATHTRTIGIIHPPPDIRNIVDKTSQFVAKNGLEFEKRIIASNAGNAKFNFLNPSDPYHAYYQHRLSEFRSQNQSSTQQPGDSALLESAPP