AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0993290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993290 MtrunA17_Chr6g0476651 95.522 134 6 0 1 134 1 134 2.39e-71 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993290 AT4G10330.1 60.150 133 45 1 2 134 6 130 4.27e-44 141

Find 61 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGAGTTGCAATGGTTTC+TGG 0.128821 6_4:-65785695 Msa0993290:three_prime_UTR
GTCCAGCAATTTAGGGAAAT+TGG 0.157183 6_4:-65791450 Msa0993290:CDS
GTGTTGAAGTCCAGCAATTT+AGG 0.181008 6_4:-65791458 Msa0993290:CDS
CCGGGCTTACAAGTTGGTTT+TGG 0.194540 6_4:-65787163 Msa0993290:CDS
CTGATTTCAGGAGTGGGTTT+TGG 0.201493 6_4:-65787196 Msa0993290:intron
CCTGGATTCGGTGTTGGTGC+TGG 0.238987 6_4:-65791425 Msa0993290:CDS
CCACACGACTCATGAGTATT+TGG 0.283491 6_4:-65791645 None:intergenic
GCTGGATGTGGTGTTGGTTT+AGG 0.284383 6_4:-65787133 Msa0993290:CDS
AACTTGAAATTAAACATATA+TGG 0.286071 6_4:+65785782 None:intergenic
TGCAACTCTCCATTTGAATA+TGG 0.294623 6_4:+65785706 None:intergenic
GCTGGGTGTGGCCTCGGTTT+TGG 0.300150 6_4:-65791407 Msa0993290:CDS
TGTTGAAGTCCAGCAATTTA+GGG 0.331725 6_4:-65791457 Msa0993290:CDS
ACATGTCAAAGTTTGATAAA+AGG 0.334054 6_4:+65785859 None:intergenic
TGTGGTGTTGGTTTAGGATT+TGG 0.335566 6_4:-65787127 Msa0993290:CDS
TCCCAATTTCCCTAAATTGC+TGG 0.342293 6_4:+65791448 None:intergenic
CAAAGAGGTGAATTTGAGTA+TGG 0.356167 6_4:-65785821 Msa0993290:three_prime_UTR
TTTGGTGCTGGATGTGGTGT+TGG 0.360496 6_4:-65787139 Msa0993290:CDS
GTTGGTTTAGGATTTGGTTA+TGG 0.373912 6_4:-65787121 Msa0993290:CDS
GTTGGTGCTGGGTGTGGCCT+CGG 0.374475 6_4:-65791413 Msa0993290:CDS
CATGATTTAGTAGAAATTAC+TGG 0.380784 6_4:+65785963 None:intergenic
TTTGGGTTTGGTGCTGGATG+TGG 0.381909 6_4:-65787145 Msa0993290:CDS
GGGAAATTGGGACCTGGATT+CGG 0.385011 6_4:-65791437 Msa0993290:CDS
TCCAGCAATTTAGGGAAATT+GGG 0.406429 6_4:-65791449 Msa0993290:CDS
TTCGGTGTTGGTGCTGGGTG+TGG 0.435372 6_4:-65791419 Msa0993290:CDS
ATTTGGTTATGGTGTGGGCA+AGG 0.435786 6_4:-65787110 Msa0993290:CDS
CTGGATTCGGTGTTGGTGCT+GGG 0.438800 6_4:-65791424 Msa0993290:CDS
TTAGGATTTGGTTATGGTGT+GGG 0.440901 6_4:-65787115 Msa0993290:CDS
TTTGGTTATGGTGTGGGCAA+GGG 0.471968 6_4:-65787109 Msa0993290:CDS
TTGCACAAGATGAGTATAGA+AGG 0.474591 6_4:-65787084 Msa0993290:CDS
TTTCTTGTTTGATATTTGAT+GGG 0.481162 6_4:+65791607 None:intergenic
CCTCTTTGATTTCTTGAACA+AGG 0.494132 6_4:+65785836 None:intergenic
TTTGGTATCGGTCTTCTTGG+AGG 0.496538 6_4:-65791389 Msa0993290:intron
TATAGAAGGTACTCAAATGT+TGG 0.502106 6_4:-65787070 Msa0993290:CDS
ATTGAAAGAAAGATGAGAAA+CGG 0.505163 6_4:-65791515 Msa0993290:exon
AAATTAAACATATATGGCAG+TGG 0.526054 6_4:+65785788 None:intergenic
TTTAGGATTTGGTTATGGTG+TGG 0.528041 6_4:-65787116 Msa0993290:CDS
CCAAAACCAACTTGTAAGCC+CGG 0.530435 6_4:+65787163 None:intergenic
GAGAAACGGTGACGATGAGA+AGG 0.530951 6_4:-65791501 Msa0993290:CDS
CCAGCACCAACACCGAATCC+AGG 0.542046 6_4:+65791425 None:intergenic
ATTCAAATGGAGAGTTGCAA+TGG 0.543317 6_4:-65785702 Msa0993290:three_prime_UTR
AAATTGCTGGACTTCAACAC+TGG 0.544171 6_4:+65791461 None:intergenic
TTGGGACCTGGATTCGGTGT+TGG 0.544772 6_4:-65791431 Msa0993290:CDS
GGAATTCCGGGCTTACAAGT+TGG 0.545758 6_4:-65787169 Msa0993290:CDS
ATGCTTCCAGAACCACGAAA+AGG 0.551606 6_4:+65787043 None:intergenic
TGTGGTGTGCCATATTCAAA+TGG 0.556258 6_4:-65785715 Msa0993290:three_prime_UTR
TCGACAAGTGGAGAAGATGA+TGG 0.558424 6_4:-65786036 Msa0993290:exon
TTCTTGTTTGATATTTGATG+GGG 0.561013 6_4:+65791608 None:intergenic
GGATGAGATTACTGCACTTG+TGG 0.583404 6_4:-65786110 Msa0993290:CDS
ATATATGTTTAATTTCAAGT+TGG 0.585208 6_4:-65785780 Msa0993290:three_prime_UTR
GTAATTTCTACTAAATCATG+TGG 0.630561 6_4:-65785960 Msa0993290:three_prime_UTR
CTTGTAAGCCCGGAATTCCA+GGG 0.631338 6_4:+65787173 None:intergenic
CATCAAGAGAAATCGACAAG+TGG 0.633315 6_4:-65786048 Msa0993290:CDS
ATTTCTACTAAATCATGTGG+TGG 0.633976 6_4:-65785957 Msa0993290:three_prime_UTR
TGAATATGGCACACCACACA+TGG 0.641597 6_4:+65785720 None:intergenic
AATTTAGGGAAATTGGGACC+TGG 0.652123 6_4:-65791443 Msa0993290:CDS
AGAAACGGTGACGATGAGAA+GGG 0.657776 6_4:-65791500 Msa0993290:CDS
CCTTGTTCAAGAAATCAAAG+AGG 0.669283 6_4:-65785836 Msa0993290:three_prime_UTR
GAAGACCGATACCAAAACCG+AGG 0.677888 6_4:+65791396 None:intergenic
ACGATGAGAAGGGTTTGCTG+TGG 0.697290 6_4:-65791490 Msa0993290:CDS
TATCTTGAAAAGACCATGTG+TGG 0.700970 6_4:-65785733 Msa0993290:three_prime_UTR
CTCATGAGTATTTGGCACTG+TGG 0.708973 6_4:-65791637 Msa0993290:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTTCTTAACAAAA+GGG + chr6_4:65787612-65787631 None:intergenic 10.0%
!!! AATTAAATTTTCTTAACAAA+AGG + chr6_4:65787613-65787632 None:intergenic 10.0%
!! AAGAAAAAATTTCATAAAAA+GGG + chr6_4:65787689-65787708 None:intergenic 10.0%
!!! AAAAACATTGATAATTTTTT+AGG - chr6_4:65791405-65791424 Msa0993290:CDS 10.0%
!!! ATAAAACTTTTCTAACAAAA+GGG + chr6_4:65785973-65785992 None:intergenic 15.0%
!!! AATAAAACTTTTCTAACAAA+AGG + chr6_4:65785974-65785993 None:intergenic 15.0%
!! TAATTAATTCTAGTGATAAA+TGG - chr6_4:65786007-65786026 Msa0993290:three_prime_UTR 15.0%
!!! TCATTTTCTTAAATTACTAA+TGG + chr6_4:65786140-65786159 None:intergenic 15.0%
!!! TCATTTTCTTAAATTACTAA+GGG + chr6_4:65786140-65786159 None:intergenic 15.0%
!! ATTTATTGTTTGATTATAGT+TGG - chr6_4:65787153-65787172 Msa0993290:CDS 15.0%
!!! TCATTTTGTTAAATTACTAA+TGG + chr6_4:65787347-65787366 None:intergenic 15.0%
!!! TCATTTTGTTAAATTACTAA+TGG + chr6_4:65787347-65787366 None:intergenic 15.0%
!! AGAAAAAATTTCATAAAAAG+GGG + chr6_4:65787688-65787707 None:intergenic 15.0%
!! CAAGAAAAAATTTCATAAAA+AGG + chr6_4:65787690-65787709 None:intergenic 15.0%
!!! TTATGAAATTTTTTCTTGTT+TGG - chr6_4:65787692-65787711 Msa0993290:intron 15.0%
!!! AGAAAAATTTTCTTACAAAA+GGG + chr6_4:65787916-65787935 None:intergenic 15.0%
!!! AAGAAAAATTTTCTTACAAA+AGG + chr6_4:65787917-65787936 None:intergenic 15.0%
!! TGAAAAAAATTCATAGAAAA+GGG + chr6_4:65788065-65788084 None:intergenic 15.0%
!! ATGAAAAAAATTCATAGAAA+AGG + chr6_4:65788066-65788085 None:intergenic 15.0%
!!! AGAAAACTTTTTTAACAAAA+GGG + chr6_4:65788140-65788159 None:intergenic 15.0%
!!! AAGAAAACTTTTTTAACAAA+AGG + chr6_4:65788141-65788160 None:intergenic 15.0%
!! AGTAAAAAAGATAAATGATT+TGG - chr6_4:65788213-65788232 Msa0993290:intron 15.0%
!!! TTAATTATTGATTTATTGAG+AGG - chr6_4:65788274-65788293 Msa0993290:intron 15.0%
!!! TAATTATTGATTTATTGAGA+GGG - chr6_4:65788275-65788294 Msa0993290:intron 15.0%
!!! GAGATAATTATTTTTTATTG+AGG - chr6_4:65789034-65789053 Msa0993290:intron 15.0%
!! AATGATACTATTATTAACTA+CGG + chr6_4:65789430-65789449 None:intergenic 15.0%
!! AAAAAATAAAAATGTTCCAT+AGG - chr6_4:65790683-65790702 Msa0993290:intron 15.0%
!! AAAAATAAAAATGTTCCATA+GGG - chr6_4:65790684-65790703 Msa0993290:intron 15.0%
!!! TAGAAACATTACAATTATTT+TGG - chr6_4:65790756-65790775 Msa0993290:intron 15.0%
!!! TTTTTTTTTTTTTGGTACAA+TGG - chr6_4:65790817-65790836 Msa0993290:intron 15.0%
!! AATTAATGTTAAAAATGAGT+TGG + chr6_4:65791136-65791155 None:intergenic 15.0%
!! ATTGTACATGAAAAAATAAA+TGG + chr6_4:65791285-65791304 None:intergenic 15.0%
!! AACTTGAAATTAAACATATA+TGG + chr6_4:65791510-65791529 None:intergenic 15.0%
!!! ATATATGTTTAATTTCAAGT+TGG - chr6_4:65791509-65791528 Msa0993290:exon 15.0%
!!! TTTCTTGTTTGATATTTGAT+GGG + chr6_4:65785685-65785704 None:intergenic 20.0%
!!! TTTTCTTGTTTGATATTTGA+TGG + chr6_4:65785686-65785705 None:intergenic 20.0%
!!! ATTTCTCTGTTTGTTTTTTA+AGG + chr6_4:65785756-65785775 None:intergenic 20.0%
!!! AGAAAACTTTTCATACAAAA+GGG + chr6_4:65786409-65786428 None:intergenic 20.0%
!!! AAGAAAACTTTTCATACAAA+AGG + chr6_4:65786410-65786429 None:intergenic 20.0%
!!! GTCATTTTCTTAAATTACTA+AGG + chr6_4:65786616-65786635 None:intergenic 20.0%
!!! TGAAAACTTTTCTTACAAAA+GGG + chr6_4:65786803-65786822 None:intergenic 20.0%
!!! ATGAAAACTTTTCTTACAAA+AGG + chr6_4:65786804-65786823 None:intergenic 20.0%
!!! TGAAAGTTTCAATTTTTCAA+CGG - chr6_4:65786853-65786872 Msa0993290:intron 20.0%
!!! CAATAAAACTTTTCTAACAA+CGG + chr6_4:65785975-65785994 None:intergenic 20.0%
!!! TTTTATTGTGTGATTATAGT+TGG - chr6_4:65787073-65787092 Msa0993290:CDS 20.0%
!!! AATAAACTTTTCTGACAAAA+AGG + chr6_4:65787136-65787155 None:intergenic 20.0%
!!! ATCAAACTTTTCTTACAAAA+GGG + chr6_4:65787211-65787230 None:intergenic 20.0%
!!! AATCAAACTTTTCTTACAAA+AGG + chr6_4:65787212-65787231 None:intergenic 20.0%
!! GTAAGAAAAGTTTGATTATT+TGG - chr6_4:65787215-65787234 Msa0993290:intron 20.0%
!! AAGAAAAATTTCTAACAGAA+TGG + chr6_4:65787764-65787783 None:intergenic 20.0%
!! AGAAAACTCTTCTTATAAAA+GGG + chr6_4:65787840-65787859 None:intergenic 20.0%
!! AAGAAAACTCTTCTTATAAA+AGG + chr6_4:65787841-65787860 None:intergenic 20.0%
!! ATTTAAGCATATGAAGATTA+GGG + chr6_4:65788338-65788357 None:intergenic 20.0%
!! TATTTAAGCATATGAAGATT+AGG + chr6_4:65788339-65788358 None:intergenic 20.0%
!! AATCTTCATATGCTTAAATA+TGG - chr6_4:65788339-65788358 Msa0993290:intron 20.0%
!!! TAAATCAGTGTTATTAAATG+TGG + chr6_4:65788538-65788557 None:intergenic 20.0%
!!! TAATAACACTGATTTAGATT+CGG - chr6_4:65788542-65788561 Msa0993290:intron 20.0%
!!! ACATTTTTATTGCTTGAATA+TGG - chr6_4:65788770-65788789 Msa0993290:intron 20.0%
!! CAAAAAAAAAAAACCCTAAA+AGG + chr6_4:65789648-65789667 None:intergenic 20.0%
!!! TTTAGTGATATTTTCTGTTT+TGG + chr6_4:65789693-65789712 None:intergenic 20.0%
!!! AATTAGTTCATAGATTTTGA+AGG - chr6_4:65789818-65789837 Msa0993290:intron 20.0%
!!! AAAGGCATAAAAATAAGAAA+AGG + chr6_4:65790297-65790316 None:intergenic 20.0%
!! AGCTTATTTACATTAAGAAA+AGG + chr6_4:65790315-65790334 None:intergenic 20.0%
!! TTAATGTAAATAAGCTCATT+TGG - chr6_4:65790319-65790338 Msa0993290:intron 20.0%
!!! AACCTTTCTATTTTATTTGT+TGG - chr6_4:65790354-65790373 Msa0993290:intron 20.0%
!! AAAATAAAAATGTTCCATAG+GGG - chr6_4:65790685-65790704 Msa0993290:intron 20.0%
!!! ATCTCATGATTTTATGTAAT+TGG - chr6_4:65790962-65790981 Msa0993290:intron 20.0%
!! AAATACTAAAAAGCTTATCA+AGG - chr6_4:65791215-65791234 Msa0993290:intron 20.0%
!! TTCTTGTTTGATATTTGATG+GGG + chr6_4:65785684-65785703 None:intergenic 25.0%
!! AAGAAAACTTTTCTCACAAA+AGG - chr6_4:65785699-65785718 Msa0993290:three_prime_UTR 25.0%
!! AGAAAACTTTTCTCACAAAA+GGG - chr6_4:65785700-65785719 Msa0993290:three_prime_UTR 25.0%
! ATTGAAAGAAAGATGAGAAA+CGG - chr6_4:65785774-65785793 Msa0993290:three_prime_UTR 25.0%
! AATTGAATGTAATCACAAGT+CGG - chr6_4:65786163-65786182 Msa0993290:intron 25.0%
!! ACATGTTTCTTGTTTGATTA+TGG - chr6_4:65786244-65786263 Msa0993290:intron 25.0%
! GAAACTTCACTTCTAATTAA+AGG + chr6_4:65786333-65786352 None:intergenic 25.0%
! TTTATTCTAGTAATCAACCA+AGG - chr6_4:65786366-65786385 Msa0993290:intron 25.0%
! TCATTTAAAAGTTGAAACCT+TGG + chr6_4:65786386-65786405 None:intergenic 25.0%
!! ATAGTTGATTCTAGTAATCA+AGG - chr6_4:65786438-65786457 Msa0993290:intron 25.0%
!! GTAAGAAAAGTTTTCATGTT+TGG - chr6_4:65786807-65786826 Msa0993290:intron 25.0%
!! CCATTTTCTTGAATTACTAA+TGG + chr6_4:65786948-65786967 None:intergenic 25.0%
! CCATTAGTAATTCAAGAAAA+TGG - chr6_4:65786945-65786964 Msa0993290:intron 25.0%
!!! TCAATTTTTCAATGACTCTT+TGG - chr6_4:65787269-65787288 Msa0993290:intron 25.0%
! TAATTCTAGTAATCAGCTAA+CGG - chr6_4:65787722-65787741 Msa0993290:intron 25.0%
!! AATCAAACTTTTCGAACAAA+GGG + chr6_4:65787993-65788012 None:intergenic 25.0%
!! AAATCAAACTTTTCGAACAA+AGG + chr6_4:65787994-65788013 None:intergenic 25.0%
! AGAATTCCATTAATCAACAA+AGG - chr6_4:65788022-65788041 Msa0993290:intron 25.0%
!! TTGAAACCTTTGTTGATTAA+TGG + chr6_4:65788031-65788050 None:intergenic 25.0%
!!! TTATGTAGTCTTTGTTTTGT+TGG - chr6_4:65788187-65788206 Msa0993290:intron 25.0%
!!! AATAACACTGATTTAGATTC+GGG - chr6_4:65788543-65788562 Msa0993290:intron 25.0%
! AAAAACACAAAGTCAAAACA+TGG + chr6_4:65788620-65788639 None:intergenic 25.0%
!!! TTTTGACTTTGTGTTTTTGA+TGG - chr6_4:65788622-65788641 Msa0993290:intron 25.0%
!!! TTTGACTTTGTGTTTTTGAT+GGG - chr6_4:65788623-65788642 Msa0993290:intron 25.0%
!!! TTTGATAGTTCCTTTTAGAT+TGG - chr6_4:65788808-65788827 Msa0993290:intron 25.0%
!!! TTGATAGTTCCTTTTAGATT+GGG - chr6_4:65788809-65788828 Msa0993290:intron 25.0%
!!! TTTAACTGGTTTTGAAAAGT+TGG - chr6_4:65788915-65788934 Msa0993290:intron 25.0%
! AAATAATTATCTCCCAATTC+CGG + chr6_4:65789027-65789046 None:intergenic 25.0%
! TTATTGAGGAATTGATCAAT+AGG - chr6_4:65789048-65789067 Msa0993290:intron 25.0%
!! AACTTTCGTAAGGATATTTT+TGG - chr6_4:65789231-65789250 Msa0993290:intron 25.0%
!!! TGACTTTCTTTTGTTTAAGA+CGG + chr6_4:65789295-65789314 None:intergenic 25.0%
!! AACAAAAGAAAGTCATCTTT+TGG - chr6_4:65789300-65789319 Msa0993290:intron 25.0%
!! GTTGAATCTTAAATCAGTTT+TGG - chr6_4:65789503-65789522 Msa0993290:intron 25.0%
! TCTATGAACTAATTAACCAA+AGG + chr6_4:65789812-65789831 None:intergenic 25.0%
! TACAAAATATCCATAGAGAT+AGG + chr6_4:65790034-65790053 None:intergenic 25.0%
!! CAAAATACTTTTCTGATTTC+AGG - chr6_4:65790081-65790100 Msa0993290:intron 25.0%
! GACCAACAAATAAAATAGAA+AGG + chr6_4:65790359-65790378 None:intergenic 25.0%
! CTCAAATAAGTTAATCCAAA+CGG - chr6_4:65790573-65790592 Msa0993290:intron 25.0%
! TCAAATAAGTTAATCCAAAC+GGG - chr6_4:65790574-65790593 Msa0993290:intron 25.0%
!!! AAATTTTAATGTATTCGTCG+TGG - chr6_4:65790911-65790930 Msa0993290:intron 25.0%
! TCTAATTTACAAAATCCGTA+TGG + chr6_4:65791001-65791020 None:intergenic 25.0%
!!! TAACATGTTGTGTTATTTTC+AGG - chr6_4:65791157-65791176 Msa0993290:intron 25.0%
!!! AACATGTTGTGTTATTTTCA+GGG - chr6_4:65791158-65791177 Msa0993290:intron 25.0%
! CATGATTTAGTAGAAATTAC+TGG + chr6_4:65791329-65791348 None:intergenic 25.0%
! GTAATTTCTACTAAATCATG+TGG - chr6_4:65791329-65791348 Msa0993290:intron 25.0%
! ACATGTCAAAGTTTGATAAA+AGG + chr6_4:65791433-65791452 None:intergenic 25.0%
! AAATTAAACATATATGGCAG+TGG + chr6_4:65791504-65791523 None:intergenic 25.0%
!!! ACTTCGACTTTTATTTAACT+CGG + chr6_4:65791626-65791645 None:intergenic 25.0%
! AGAAAACTTTTCTCACAACA+GGG + chr6_4:65786054-65786073 None:intergenic 30.0%
! AAGAAAACTTTTCTCACAAC+AGG + chr6_4:65786055-65786074 None:intergenic 30.0%
!! CACACTTTTTATAGAAGTGT+CGG - chr6_4:65786204-65786223 Msa0993290:intron 30.0%
GCATTAGAGTAATCAACTAA+AGG - chr6_4:65786268-65786287 Msa0993290:intron 30.0%
! TTTTTGAATGACCCTTTTGT+TGG - chr6_4:65786296-65786315 Msa0993290:intron 30.0%
TGCTTCATAGTCTAACAAAA+GGG + chr6_4:65786549-65786568 None:intergenic 30.0%
TTGAATGCAATCACAAATGT+TGG - chr6_4:65786640-65786659 Msa0993290:intron 30.0%
! TGTTTGATTATAGTTGGTTC+TGG - chr6_4:65787159-65787178 Msa0993290:CDS 30.0%
CCATCGAAAAATTGAAACTT+TGG + chr6_4:65787188-65787207 None:intergenic 30.0%
!! CCAAAGTTTCAATTTTTCGA+TGG - chr6_4:65787185-65787204 Msa0993290:CDS 30.0%
TTGAATGTAATCACAAGTGT+CGG - chr6_4:65786973-65786992 Msa0993290:intron 30.0%
! ATCAAACTTTTCGAACAAAG+GGG + chr6_4:65787992-65788011 None:intergenic 30.0%
!! TTATTGATTTATTGAGAGGG+TGG - chr6_4:65788278-65788297 Msa0993290:intron 30.0%
TCATATGCTTAAATATGGCA+TGG - chr6_4:65788344-65788363 Msa0993290:intron 30.0%
AGATCAGTGTTGTCAAATAT+CGG - chr6_4:65788401-65788420 Msa0993290:intron 30.0%
GTAAGTCATATAATCATGTG+TGG - chr6_4:65788565-65788584 Msa0993290:intron 30.0%
ATATAATCATGTGTGGATCT+GGG - chr6_4:65788572-65788591 Msa0993290:intron 30.0%
!! TTGACTTTGTGTTTTTGATG+GGG - chr6_4:65788624-65788643 Msa0993290:intron 30.0%
ATTAAGAACGACTGAAATTC+CGG + chr6_4:65788659-65788678 None:intergenic 30.0%
GAATTTCAGTCGTTCTTAAT+TGG - chr6_4:65788659-65788678 Msa0993290:intron 30.0%
TTTATTGCTTGAATATGGCA+TGG - chr6_4:65788775-65788794 Msa0993290:intron 30.0%
!!! GTTTTGACTCTGTTTTTAAC+TGG - chr6_4:65788901-65788920 Msa0993290:intron 30.0%
!! TTTTGAAAAGTTGGATTGTG+AGG - chr6_4:65788924-65788943 Msa0993290:intron 30.0%
! AATAGGCAGTTATACCATTT+TGG - chr6_4:65789065-65789084 Msa0993290:intron 30.0%
! ATAGGCAGTTATACCATTTT+GGG - chr6_4:65789066-65789085 Msa0993290:intron 30.0%
GACACATATACACTATTTCA+AGG + chr6_4:65789145-65789164 None:intergenic 30.0%
!! AATCTATGTTAGTCTTTGCT+TGG - chr6_4:65789257-65789276 Msa0993290:intron 30.0%
GCATCACAATTCAAAATTGA+TGG + chr6_4:65789900-65789919 None:intergenic 30.0%
TAAACAGTATCCTATCTCTA+TGG - chr6_4:65790021-65790040 Msa0993290:intron 30.0%
!! TATAGAAGGTACTCAAATGT+TGG - chr6_4:65790219-65790238 Msa0993290:intron 30.0%
GCATAAAAATAAGAAAAGGC+AGG + chr6_4:65790293-65790312 None:intergenic 30.0%
TTTATCCAAACAGCGAAAAT+CGG + chr6_4:65790384-65790403 None:intergenic 30.0%
ACTAAAGTCACAAACTATCT+TGG - chr6_4:65790463-65790482 Msa0993290:intron 30.0%
TAAGTACTTGTGAGACAATT+TGG + chr6_4:65790540-65790559 None:intergenic 30.0%
TTTCATCTCTTGTGCATTAA+GGG + chr6_4:65790600-65790619 None:intergenic 30.0%
ATTAGAAAGCTAGAAACAGT+TGG - chr6_4:65791015-65791034 Msa0993290:intron 30.0%
TAGCTACAGATATATCTGTA+GGG + chr6_4:65791089-65791108 None:intergenic 30.0%
ATAGCTACAGATATATCTGT+AGG + chr6_4:65791090-65791109 None:intergenic 30.0%
ATTTCTACTAAATCATGTGG+TGG - chr6_4:65791332-65791351 Msa0993290:intron 30.0%
!! TGGTCTTTTCAAGATAGTAT+CGG + chr6_4:65791552-65791571 None:intergenic 30.0%
TGTTGAAGTCCAGCAATTTA+GGG - chr6_4:65785832-65785851 Msa0993290:three_prime_UTR 35.0%
TCCAGCAATTTAGGGAAATT+GGG - chr6_4:65785840-65785859 Msa0993290:three_prime_UTR 35.0%
GTGCTTCATAGTCTAACAAA+AGG + chr6_4:65786550-65786569 None:intergenic 35.0%
AATGCAATCACAAATGTTGG+TGG - chr6_4:65786643-65786662 Msa0993290:intron 35.0%
TGCTTCGTAGTCTAACAAAA+GGG + chr6_4:65786879-65786898 None:intergenic 35.0%
! TACTAATGGTGTCAACATGT+CGG + chr6_4:65786126-65786145 None:intergenic 35.0%
!!! TGGATTTTTTGAAACTGCCA+TGG - chr6_4:65788443-65788462 Msa0993290:intron 35.0%
CAACATAAAAGTTATGACGC+TGG + chr6_4:65788486-65788505 None:intergenic 35.0%
! CAGCGTCATAACTTTTATGT+TGG - chr6_4:65788484-65788503 Msa0993290:intron 35.0%
TAAATGTGGATGACAGACAA+TGG + chr6_4:65788524-65788543 None:intergenic 35.0%
CATATAATCATGTGTGGATC+TGG - chr6_4:65788571-65788590 Msa0993290:intron 35.0%
ATTATGTGACTGTGTGAATG+TGG - chr6_4:65788691-65788710 Msa0993290:intron 35.0%
TTATGTGACTGTGTGAATGT+GGG - chr6_4:65788692-65788711 Msa0993290:intron 35.0%
TGTGGAATCTTAATCCATCA+GGG + chr6_4:65788722-65788741 None:intergenic 35.0%
AATCACTCTGTTGAGGATTT+AGG - chr6_4:65788875-65788894 Msa0993290:intron 35.0%
ATCACTCTGTTGAGGATTTA+GGG - chr6_4:65788876-65788895 Msa0993290:intron 35.0%
TTCGTTCATTCAGCCAATTA+AGG + chr6_4:65788953-65788972 None:intergenic 35.0%
! TAGGCAGTTATACCATTTTG+GGG - chr6_4:65789067-65789086 Msa0993290:intron 35.0%
!! TTATACCATTTTGGGGGTAA+TGG - chr6_4:65789074-65789093 Msa0993290:intron 35.0%
!! TATACCATTTTGGGGGTAAT+GGG - chr6_4:65789075-65789094 Msa0993290:intron 35.0%
!!! AGTTTTGATTGTGAGTTTGC+TGG - chr6_4:65789101-65789120 Msa0993290:intron 35.0%
!!! TGTGAGTTTGCTGGTTTTAT+TGG - chr6_4:65789110-65789129 Msa0993290:intron 35.0%
GTTTGAAGGTTCTTAAGTGT+TGG - chr6_4:65789179-65789198 Msa0993290:intron 35.0%
GTAATGTGAGAACTTTCGTA+AGG - chr6_4:65789221-65789240 Msa0993290:intron 35.0%
!! TCATCTTTTGGAAGCCTTTT+CGG - chr6_4:65789312-65789331 Msa0993290:intron 35.0%
GTACAGAAGATTATCCGAAA+AGG + chr6_4:65789329-65789348 None:intergenic 35.0%
TCAATTTGCATCAAAGTGAG+AGG - chr6_4:65789461-65789480 Msa0993290:intron 35.0%
!!! TCAGTTTTGGACTTGAATCA+TGG - chr6_4:65789516-65789535 Msa0993290:intron 35.0%
!!! CAGTTTTGGACTTGAATCAT+GGG - chr6_4:65789517-65789536 Msa0993290:intron 35.0%
!!! TAAAAGGCCATTTTGAAACC+GGG + chr6_4:65789632-65789651 None:intergenic 35.0%
!!! CTAAAAGGCCATTTTGAAAC+CGG + chr6_4:65789633-65789652 None:intergenic 35.0%
! GGTTTCAAAATGGCCTTTTA+GGG - chr6_4:65789632-65789651 Msa0993290:intron 35.0%
TGATTCATAGCAGACTTGTA+TGG + chr6_4:65789721-65789740 None:intergenic 35.0%
! TACTTTTCTGATTTCAGGAG+TGG - chr6_4:65790086-65790105 Msa0993290:intron 35.0%
! ACTTTTCTGATTTCAGGAGT+GGG - chr6_4:65790087-65790106 Msa0993290:intron 35.0%
!!! TTACAAGTTGGTTTTGGGTT+TGG - chr6_4:65790132-65790151 Msa0993290:intron 35.0%
! GTTGGTTTAGGATTTGGTTA+TGG - chr6_4:65790168-65790187 Msa0993290:intron 35.0%
! TTTAGGATTTGGTTATGGTG+TGG - chr6_4:65790173-65790192 Msa0993290:intron 35.0%
! TTAGGATTTGGTTATGGTGT+GGG - chr6_4:65790174-65790193 Msa0993290:intron 35.0%
TTGCACAAGATGAGTATAGA+AGG - chr6_4:65790205-65790224 Msa0993290:intron 35.0%
! AATGTTGGAAATCCTTTTCG+TGG - chr6_4:65790234-65790253 Msa0993290:intron 35.0%
CTTTCATCTCTTGTGCATTA+AGG + chr6_4:65790601-65790620 None:intergenic 35.0%
! CCTCTTTGATTTCTTGAACA+AGG + chr6_4:65791456-65791475 None:intergenic 35.0%
CCTTGTTCAAGAAATCAAAG+AGG - chr6_4:65791453-65791472 Msa0993290:CDS 35.0%
CAAAGAGGTGAATTTGAGTA+TGG - chr6_4:65791468-65791487 Msa0993290:CDS 35.0%
TATCTTGAAAAGACCATGTG+TGG - chr6_4:65791556-65791575 Msa0993290:five_prime_UTR 35.0%
TGCAACTCTCCATTTGAATA+TGG + chr6_4:65791586-65791605 None:intergenic 35.0%
ATTCAAATGGAGAGTTGCAA+TGG - chr6_4:65791587-65791606 Msa0993290:five_prime_UTR 35.0%
AAATTGCTGGACTTCAACAC+TGG + chr6_4:65785831-65785850 None:intergenic 40.0%
GTGTTGAAGTCCAGCAATTT+AGG - chr6_4:65785831-65785850 Msa0993290:three_prime_UTR 40.0%
GTCCAGCAATTTAGGGAAAT+TGG - chr6_4:65785839-65785858 Msa0993290:three_prime_UTR 40.0%
TCCCAATTTCCCTAAATTGC+TGG + chr6_4:65785844-65785863 None:intergenic 40.0%
AATTTAGGGAAATTGGGACC+TGG - chr6_4:65785846-65785865 Msa0993290:three_prime_UTR 40.0%
! AATGACCCTTTTGTTGGACA+TGG - chr6_4:65786302-65786321 Msa0993290:intron 40.0%
GTGCTTCGTAGTCTAACAAA+AGG + chr6_4:65786880-65786899 None:intergenic 40.0%
ACAAGTGTCAGTGTTAGACA+CGG - chr6_4:65786985-65787004 Msa0993290:intron 40.0%
TGTTAGACACGGAAACATGT+TGG - chr6_4:65786996-65787015 Msa0993290:intron 40.0%
TTCTAACAACGGTTAAGCGT+CGG + chr6_4:65787050-65787069 None:intergenic 40.0%
! ACACCTTTGATCAGAAGTGT+CGG - chr6_4:65787505-65787524 Msa0993290:intron 40.0%
! TTTTCGAACAAAGGGGTCAT+TGG + chr6_4:65787985-65788004 None:intergenic 40.0%
TTATTGAGAGGGTGGTATTG+TGG - chr6_4:65788286-65788305 Msa0993290:intron 40.0%
AATACTTCACGAATTGGCCA+TGG + chr6_4:65788463-65788482 None:intergenic 40.0%
!!! GGCAGTTCGATTTTGATTTG+AGG - chr6_4:65788593-65788612 Msa0993290:intron 40.0%
TTTGATGGGGTTTGAAAAGC+CGG - chr6_4:65788637-65788656 Msa0993290:intron 40.0%
GTCGTTCTTAATTGGACGAA+TGG - chr6_4:65788667-65788686 Msa0993290:intron 40.0%
TATGTGACTGTGTGAATGTG+GGG - chr6_4:65788693-65788712 Msa0993290:intron 40.0%
GTGTGGAATCTTAATCCATC+AGG + chr6_4:65788723-65788742 None:intergenic 40.0%
TGCTTCGCACATTTAATGTG+TGG + chr6_4:65788740-65788759 None:intergenic 40.0%
! AGTTCCTTTTAGATTGGGAG+AGG - chr6_4:65788814-65788833 Msa0993290:intron 40.0%
! GTTCCTTTTAGATTGGGAGA+GGG - chr6_4:65788815-65788834 Msa0993290:intron 40.0%
! TTCCTTTTAGATTGGGAGAG+GGG - chr6_4:65788816-65788835 Msa0993290:intron 40.0%
GATTGTGAGGCTTCCTTAAT+TGG - chr6_4:65788937-65788956 Msa0993290:intron 40.0%
ATCACATGACAACGTGAATG+TGG - chr6_4:65788973-65788992 Msa0993290:intron 40.0%
TCACATGACAACGTGAATGT+GGG - chr6_4:65788974-65788993 Msa0993290:intron 40.0%
ACCTGGATTCTCTATTGTCA+GGG + chr6_4:65789004-65789023 None:intergenic 40.0%
! AGGCAGTTATACCATTTTGG+GGG - chr6_4:65789068-65789087 Msa0993290:intron 40.0%
AGAACCTTCAAACCACAACA+AGG + chr6_4:65789172-65789191 None:intergenic 40.0%
! CGGTTTCAAAATGGCCTTTT+AGG - chr6_4:65789631-65789650 Msa0993290:intron 40.0%
CAAGTCTGCTATGAATCAAC+AGG - chr6_4:65789723-65789742 Msa0993290:intron 40.0%
TATGAATCAACAGGCCAACA+AGG - chr6_4:65789732-65789751 Msa0993290:intron 40.0%
ACACATTCTAACGTAGTGCA+AGG + chr6_4:65789946-65789965 None:intergenic 40.0%
!! TGTGGTGTTGGTTTAGGATT+TGG - chr6_4:65790162-65790181 Msa0993290:intron 40.0%
AAACTATCTTGGCGAGCTTA+TGG - chr6_4:65790474-65790493 Msa0993290:intron 40.0%
ACAGATATATCTGTAGGGTC+TGG + chr6_4:65791084-65791103 None:intergenic 40.0%
CATCAAGAGAAATCGACAAG+TGG - chr6_4:65791241-65791260 Msa0993290:intron 40.0%
TGTGGTGTGCCATATTCAAA+TGG - chr6_4:65791574-65791593 Msa0993290:five_prime_UTR 40.0%
CTCATGAGTATTTGGCACTG+TGG - chr6_4:65785652-65785671 Msa0993290:three_prime_UTR 45.0%
AGAAACGGTGACGATGAGAA+GGG - chr6_4:65785789-65785808 Msa0993290:three_prime_UTR 45.0%
!!! GGTTTTGGTATCGGTCTTCT+TGG - chr6_4:65785897-65785916 Msa0993290:three_prime_UTR 45.0%
!! TTTGGTATCGGTCTTCTTGG+AGG - chr6_4:65785900-65785919 Msa0993290:three_prime_UTR 45.0%
AGTGTGTCGTGGTAACAAAG+GGG + chr6_4:65786105-65786124 None:intergenic 45.0%
CAGTGTGTCGTGGTAACAAA+GGG + chr6_4:65786106-65786125 None:intergenic 45.0%
TCAGTGTGTCGTGGTAACAA+AGG + chr6_4:65786107-65786126 None:intergenic 45.0%
CGTGTCCATGTCCAACAAAA+GGG + chr6_4:65786310-65786329 None:intergenic 45.0%
! GCAATCACAAATGTTGGTGG+CGG - chr6_4:65786646-65786665 Msa0993290:intron 45.0%
GCACCAACACTTCTAATCGA+AGG + chr6_4:65786702-65786721 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr6_4:65788407-65788426 Msa0993290:intron 45.0%
TTGTCAAATATCGGCCATGG+TGG - chr6_4:65788410-65788429 Msa0993290:intron 45.0%
CGCTGGAATACTTCACGAAT+TGG + chr6_4:65788469-65788488 None:intergenic 45.0%
ATGTGGATGACAGACAATGG+TGG + chr6_4:65788521-65788540 None:intergenic 45.0%
! TCCTTTTAGATTGGGAGAGG+GGG - chr6_4:65788817-65788836 Msa0993290:intron 45.0%
TTGGGAGAGGGGGTAAAATT+TGG - chr6_4:65788827-65788846 Msa0993290:intron 45.0%
TGGGAGAGGGGGTAAAATTT+GGG - chr6_4:65788828-65788847 Msa0993290:intron 45.0%
CAGAGTGATTGCATGACTGA+AGG + chr6_4:65788865-65788884 None:intergenic 45.0%
GTCATGCAATCACTCTGTTG+AGG - chr6_4:65788868-65788887 Msa0993290:intron 45.0%
CACATGACAACGTGAATGTG+GGG - chr6_4:65788975-65788994 Msa0993290:intron 45.0%
ACCCTGACAATAGAGAATCC+AGG - chr6_4:65789000-65789019 Msa0993290:intron 45.0%
GACCTGGATTCTCTATTGTC+AGG + chr6_4:65789005-65789024 None:intergenic 45.0%
GACAATAGAGAATCCAGGTC+CGG - chr6_4:65789005-65789024 Msa0993290:intron 45.0%
! TATGTGTCCTTGCCTTGTTG+TGG - chr6_4:65789157-65789176 Msa0993290:intron 45.0%
CTTCAAACCACAACAAGGCA+AGG + chr6_4:65789167-65789186 None:intergenic 45.0%
! CTTGCCTTGTTGTGGTTTGA+AGG - chr6_4:65789165-65789184 Msa0993290:intron 45.0%
GATTATGCTGTGAATCCCAC+AGG - chr6_4:65789578-65789597 Msa0993290:intron 45.0%
TCTGCAACCCGGTTTCAAAA+TGG - chr6_4:65789622-65789641 Msa0993290:intron 45.0%
ATTAGAGTCGTCCACCTTGT+TGG + chr6_4:65789749-65789768 None:intergenic 45.0%
AACCTAATCCAGCTCGAACA+AGG - chr6_4:65789782-65789801 Msa0993290:intron 45.0%
ACCTAATCCAGCTCGAACAA+GGG - chr6_4:65789783-65789802 Msa0993290:intron 45.0%
!! CTGATTTCAGGAGTGGGTTT+TGG - chr6_4:65790093-65790112 Msa0993290:intron 45.0%
CCAAAACCAACTTGTAAGCC+CGG + chr6_4:65790129-65790148 None:intergenic 45.0%
!!! CGGGCTTACAAGTTGGTTTT+GGG - chr6_4:65790127-65790146 Msa0993290:intron 45.0%
ATTTGGTTATGGTGTGGGCA+AGG - chr6_4:65790179-65790198 Msa0993290:intron 45.0%
TTTGGTTATGGTGTGGGCAA+GGG - chr6_4:65790180-65790199 Msa0993290:intron 45.0%
! GGAAATCCTTTTCGTGGTTC+TGG - chr6_4:65790240-65790259 Msa0993290:intron 45.0%
ATGCTTCCAGAACCACGAAA+AGG + chr6_4:65790249-65790268 None:intergenic 45.0%
ATCCAAACAGCGAAAATCGG+AGG + chr6_4:65790381-65790400 None:intergenic 45.0%
! CTAGTCACAGTTTTCCCCTA+TGG + chr6_4:65790702-65790721 None:intergenic 45.0%
ACATCCATTGAGCAGTTGGT+TGG + chr6_4:65790783-65790802 None:intergenic 45.0%
AACCAACTGCTCAATGGATG+TGG - chr6_4:65790782-65790801 Msa0993290:intron 45.0%
AACCACATCCATTGAGCAGT+TGG + chr6_4:65790787-65790806 None:intergenic 45.0%
GGAGACTGAAACATGCCATA+CGG - chr6_4:65790983-65791002 Msa0993290:intron 45.0%
GGATGAGATTACTGCACTTG+TGG - chr6_4:65791179-65791198 Msa0993290:intron 45.0%
TCGACAAGTGGAGAAGATGA+TGG - chr6_4:65791253-65791272 Msa0993290:intron 45.0%
TGAATATGGCACACCACACA+TGG + chr6_4:65791572-65791591 None:intergenic 45.0%
TGGAGAGTTGCAATGGTTTC+TGG - chr6_4:65791594-65791613 Msa0993290:five_prime_UTR 45.0%
!!! ATTCATATTTTTTTTTTTTT+TGG - chr6_4:65790809-65790828 Msa0993290:intron 5.0%
!!! AATTTTTAAATATAATTTGT+TGG + chr6_4:65790874-65790893 None:intergenic 5.0%
!! AATACATTAAAATTTATAAA+TGG + chr6_4:65790906-65790925 None:intergenic 5.0%
GAGAAACGGTGACGATGAGA+AGG - chr6_4:65785788-65785807 Msa0993290:three_prime_UTR 50.0%
!! ACGATGAGAAGGGTTTGCTG+TGG - chr6_4:65785799-65785818 Msa0993290:three_prime_UTR 50.0%
GGGAAATTGGGACCTGGATT+CGG - chr6_4:65785852-65785871 Msa0993290:three_prime_UTR 50.0%
!! TGTGGCCTCGGTTTTGGTAT+CGG - chr6_4:65785888-65785907 Msa0993290:three_prime_UTR 50.0%
GAAGACCGATACCAAAACCG+AGG + chr6_4:65785896-65785915 None:intergenic 50.0%
GTCAACATGTCAGTGTGTCG+TGG + chr6_4:65786116-65786135 None:intergenic 50.0%
!! ATCACAAGTCGGTGTCGTGT+CGG - chr6_4:65786174-65786193 Msa0993290:intron 50.0%
GCGTGTCCATGTCCAACAAA+AGG + chr6_4:65786311-65786330 None:intergenic 50.0%
GTCGTGTGTAGTGCATGTGT+CGG + chr6_4:65786572-65786591 None:intergenic 50.0%
! CTTCTAATCGAAGGCGCATG+CGG + chr6_4:65786693-65786712 None:intergenic 50.0%
! GCGCCTTCGATTAGAAGTGT+TGG - chr6_4:65786696-65786715 Msa0993290:intron 50.0%
! GCGTCGGCACTTCTAATTGA+AGG + chr6_4:65787034-65787053 None:intergenic 50.0%
!! TGTCGGTGTTGTGTCGTTGT+CGG - chr6_4:65787480-65787499 Msa0993290:intron 50.0%
! GCACCGACACTTCTGATCAA+AGG + chr6_4:65787511-65787530 None:intergenic 50.0%
TGAATGTGGGGTTTCCCTGA+TGG - chr6_4:65788705-65788724 Msa0993290:intron 50.0%
ACCCCCTCTCCCAATCTAAA+AGG + chr6_4:65788821-65788840 None:intergenic 50.0%
GGGAGAGGGGGTAAAATTTG+GGG - chr6_4:65788829-65788848 Msa0993290:intron 50.0%
AGAGAATCCAGGTCCGGAAT+TGG - chr6_4:65789011-65789030 Msa0993290:intron 50.0%
GAGAATCCAGGTCCGGAATT+GGG - chr6_4:65789012-65789031 Msa0993290:intron 50.0%
TTATCTCCCAATTCCGGACC+TGG + chr6_4:65789021-65789040 None:intergenic 50.0%
CCATGACAGAATCAGCCTGT+GGG + chr6_4:65789596-65789615 None:intergenic 50.0%
TGAAACCGGGTTGCAGAACT+TGG + chr6_4:65789619-65789638 None:intergenic 50.0%
GAATCAACAGGCCAACAAGG+TGG - chr6_4:65789735-65789754 Msa0993290:intron 50.0%
CCTAATCCAGCTCGAACAAG+GGG - chr6_4:65789784-65789803 Msa0993290:intron 50.0%
CTTGTAAGCCCGGAATTCCA+GGG + chr6_4:65790119-65790138 None:intergenic 50.0%
ACTTGTAAGCCCGGAATTCC+AGG + chr6_4:65790120-65790139 None:intergenic 50.0%
GGAATTCCGGGCTTACAAGT+TGG - chr6_4:65790120-65790139 Msa0993290:intron 50.0%
!!! CCGGGCTTACAAGTTGGTTT+TGG - chr6_4:65790126-65790145 Msa0993290:intron 50.0%
!!! GTTGGTTTTGGGTTTGGTGC+TGG - chr6_4:65790138-65790157 Msa0993290:intron 50.0%
!! TTTGGGTTTGGTGCTGGATG+TGG - chr6_4:65790144-65790163 Msa0993290:intron 50.0%
!! TTTGGTGCTGGATGTGGTGT+TGG - chr6_4:65790150-65790169 Msa0993290:intron 50.0%
!! GCTGGATGTGGTGTTGGTTT+AGG - chr6_4:65790156-65790175 Msa0993290:intron 50.0%
! GTCCTCCGATTTTCGCTGTT+TGG - chr6_4:65790376-65790395 Msa0993290:intron 50.0%
TTGTGCATTAAGGGCCCGTT+TGG + chr6_4:65790591-65790610 None:intergenic 50.0%
TGGTCCAACCAACTGCTCAA+TGG - chr6_4:65790776-65790795 Msa0993290:intron 50.0%
!! TTGGGACCTGGATTCGGTGT+TGG - chr6_4:65785858-65785877 Msa0993290:three_prime_UTR 55.0%
!! CTGGATTCGGTGTTGGTGCT+GGG - chr6_4:65785865-65785884 Msa0993290:three_prime_UTR 55.0%
GTGTCGTGGTAACAAAGGGG+TGG + chr6_4:65786102-65786121 None:intergenic 55.0%
GGCGGACACAAGACACATCT+CGG - chr6_4:65786664-65786683 Msa0993290:intron 55.0%
TGCGCCCATTACCCCCAAAA+TGG + chr6_4:65789082-65789101 None:intergenic 55.0%
! CCCACAGGCTGATTCTGTCA+TGG - chr6_4:65789593-65789612 Msa0993290:intron 55.0%
GCCATGACAGAATCAGCCTG+TGG + chr6_4:65789597-65789616 None:intergenic 55.0%
CATGGCCAAGTTCTGCAACC+CGG - chr6_4:65789611-65789630 Msa0993290:intron 55.0%
CCCCTTGTTCGAGCTGGATT+AGG + chr6_4:65789787-65789806 None:intergenic 55.0%
AAGGTTCCCCTTGTTCGAGC+TGG + chr6_4:65789793-65789812 None:intergenic 55.0%
GCTCGAACAAGGGGAACCTT+TGG - chr6_4:65789793-65789812 Msa0993290:intron 55.0%
!! GGGTTTTGGCCCTGGAATTC+CGG - chr6_4:65790107-65790126 Msa0993290:intron 55.0%
!! GGTTTTGGCCCTGGAATTCC+GGG - chr6_4:65790108-65790127 Msa0993290:intron 55.0%
CCAGCACCAACACCGAATCC+AGG + chr6_4:65785867-65785886 None:intergenic 60.0%
!! CCTGGATTCGGTGTTGGTGC+TGG - chr6_4:65785864-65785883 Msa0993290:three_prime_UTR 60.0%
!! TTCGGTGTTGGTGCTGGGTG+TGG - chr6_4:65785870-65785889 Msa0993290:three_prime_UTR 60.0%
!! AGTCGGTGTCGTGTCGGACA+TGG - chr6_4:65786180-65786199 Msa0993290:intron 60.0%
CGGTGTGTGTGTGTCGTGTG+CGG + chr6_4:65786914-65786933 None:intergenic 60.0%
TCCACCAGTGCAGTCCACCA+TGG + chr6_4:65788427-65788446 None:intergenic 60.0%
!! TCAGGAGTGGGTTTTGGCCC+TGG - chr6_4:65790099-65790118 Msa0993290:intron 60.0%
!! GTTGGTGCTGGGTGTGGCCT+CGG - chr6_4:65785876-65785895 Msa0993290:three_prime_UTR 65.0%
! GCTGGGTGTGGCCTCGGTTT+TGG - chr6_4:65785882-65785901 Msa0993290:three_prime_UTR 65.0%
!! TCGGCCATGGTGGACTGCAC+TGG - chr6_4:65788420-65788439 Msa0993290:intron 65.0%
!! GCCATGGTGGACTGCACTGG+TGG - chr6_4:65788423-65788442 Msa0993290:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 65785652 65791659 65785652 ID=Msa0993290;Name=Msa0993290
chr6_4 mRNA 65785652 65791659 65785652 ID=Msa0993290-mRNA-1;Parent=Msa0993290;Name=Msa0993290-mRNA-1;_AED=0.20;_eAED=0.20;_QI=134|1|1|1|1|1|3|387|134
chr6_4 exon 65785652 65786132 65785652 ID=Msa0993290-mRNA-1:exon:12298;Parent=Msa0993290-mRNA-1
chr6_4 exon 65787034 65787208 65787034 ID=Msa0993290-mRNA-1:exon:12297;Parent=Msa0993290-mRNA-1
chr6_4 exon 65791390 65791659 65791390 ID=Msa0993290-mRNA-1:exon:12296;Parent=Msa0993290-mRNA-1
chr6_4 five_prime_UTR 65791526 65791659 65791526 ID=Msa0993290-mRNA-1:five_prime_utr;Parent=Msa0993290-mRNA-1
chr6_4 CDS 65791390 65791525 65791390 ID=Msa0993290-mRNA-1:cds;Parent=Msa0993290-mRNA-1
chr6_4 CDS 65787034 65787208 65787034 ID=Msa0993290-mRNA-1:cds;Parent=Msa0993290-mRNA-1
chr6_4 CDS 65786039 65786132 65786039 ID=Msa0993290-mRNA-1:cds;Parent=Msa0993290-mRNA-1
chr6_4 three_prime_UTR 65785652 65786038 65785652 ID=Msa0993290-mRNA-1:three_prime_utr;Parent=Msa0993290-mRNA-1
Gene Sequence

>Msa0993290

ATGAGAAACGGTGACGATGAGAAGGGTTTGCTGTGGAAACTTCCAGTGTTGAAGTCCAGCAATTTAGGGAAATTGGGACCTGGATTCGGTGTTGGTGCTGGGTGTGGCCTCGGTTTTGGTATCGGTCTTCTTGGAGGAGTGGGTTTTGGCCCTGGAATTCCGGGCTTACAAGTTGGTTTTGGGTTTGGTGCTGGATGTGGTGTTGGTTTAGGATTTGGTTATGGTGTGGGCAAGGGAATTGCACAAGATGAGTATAGAAGGTACTCAAATGTTGGAAATCCTTTTCGTGGTTCTGGAAGCATTATTAATGAGGATGAGATTACTGCACTTGTGGATGACATAGTCATAAATACTAAAAAGCTTATCAAGGCAACATCAAGAGAAATCGACAAGTGGAGAAGATGA

Protein sequence

>Msa0993290

MRNGDDEKGLLWKLPVLKSSNLGKLGPGFGVGAGCGLGFGIGLLGGVGFGPGIPGLQVGFGFGAGCGVGLGFGYGVGKGIAQDEYRRYSNVGNPFRGSGSIINEDEITALVDDIVINTKKLIKATSREIDKWRR*