AlfalfaGEDB | Msa0661190

M. sativa cultivar zhongmu-4 / Msa0661190

KEGG: K22503
GO: GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661190	XP_003588866.1	96.471	170	6	0	73	242	1	170	6.61e-106	328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661190	sp\|Q9M084\|SYDC2_ARATH	41.398	186	91	4	75	242	2	187	9.97e-27	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0661190	0.828252	9.970561e-55	-8.615850e-47
Msa0002240	Msa0661190	-0.828854	7.133561e-55	-8.615850e-47
Msa0003890	Msa0661190	-0.815955	7.090650e-52	-8.615850e-47
Msa0004860	Msa0661190	-0.807650	4.557519e-50	-8.615850e-47
Msa0004920	Msa0661190	-0.820961	5.201771e-53	-8.615850e-47
Msa0006000	Msa0661190	-0.819639	1.044879e-52	-8.615850e-47
Msa0006040	Msa0661190	-0.837026	6.624683e-57	-8.615850e-47
Msa0006070	Msa0661190	-0.854134	1.506880e-61	-8.615850e-47
Msa0007440	Msa0661190	-0.837119	6.271126e-57	-8.615850e-47
Msa0011170	Msa0661190	-0.855448	6.266963e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661190	MtrunA17_Chr1g0150111	96.471	170	6	0	73	242	1	170	6.08e-110	328
Msa0661190	MtrunA17_Chr5g0410321	44.949	198	69	3	63	260	52	209	3.28e-37	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0661190	AT4G31180.1	41.398	186	91	4	75	242	2	187	1.01e-27	112
Msa0661190	AT4G31180.2	41.398	186	91	4	75	242	2	187	1.01e-27	112
Msa0661190	AT4G26870.1	42.262	168	90	5	100	266	23	184	5.86e-24	101

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Find 68 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGCCTCACAACAGGT+TGG	0.643312	4_3:-72403062	Msa0661190:CDS
AACAAGCCGGTTCTAATCCG+TGG	0.547533	4_3:-72403281	Msa0661190:CDS
AACGCCATCTTCTTCCCAAC+TGG	0.452718	4_3:+72403239	None:intergenic
AATACCATAATTGACAGCAA+GGG	0.690003	4_3:+72403388	None:intergenic
AATAGACTCACGGCTGAGAG+CGG	0.623488	4_3:+72403127	None:intergenic
AATCATTGAGAGCCTCAACT+CGG	0.583678	4_3:+72403312	None:intergenic
ACAAGCCGGTTCTAATCCGT+GGG	0.615482	4_3:-72403280	Msa0661190:CDS
AGACTCACGGCTGAGAGCGG+CGG	0.581736	4_3:+72403130	None:intergenic
AGAGAGAGTCGATGTAGCAG+AGG	0.593608	4_3:+72403424	None:intergenic
AGCCGGTTCTAATCCGTGGG+AGG	0.623958	4_3:-72403277	Msa0661190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTCTCTATGGACAATTAT+TGG	-	chr4_3:72403010-72403029	Msa0661190:CDS	30.0%
TTATGAGTCATTCTTCGATA+TGG	-	chr4_3:72403286-72403305	Msa0661190:CDS	30.0%
AAAACATTTCGACATACTCA+GGG	+	chr4_3:72403645-72403664	None:intergenic	30.0%
AAAAACATTTCGACATACTC+AGG	+	chr4_3:72403646-72403665	None:intergenic	30.0%
ACATTTATCAAACACCTAGT+AGG	+	chr4_3:72404090-72404109	None:intergenic	30.0%
TGTTTGATAAATGTCCTAAG+TGG	-	chr4_3:72404096-72404115	Msa0661190:intron	30.0%
AAATTCAAAGAACACCACTT+AGG	+	chr4_3:72404113-72404132	None:intergenic	30.0%
TACCATTTGAGCACAAAAAA+CGG	+	chr4_3:72404236-72404255	None:intergenic	30.0%
ATCAGAAACAGAAAGCAAAA+AGG	-	chr4_3:72404770-72404789	Msa0661190:intron	30.0%
AATACCATAATTGACAGCAA+GGG	+	chr4_3:72404892-72404911	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	72402977	72405322	72402977	ID=Msa0661190;Name=Msa0661190
chr4_3	mRNA	72402977	72405322	72402977	ID=Msa0661190-mRNA-1;Parent=Msa0661190;Name=Msa0661190-mRNA-1;_AED=0.64;_eAED=0.64;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|270
chr4_3	exon	72405314	72405322	72405314	ID=Msa0661190-mRNA-1:exon:21761;Parent=Msa0661190-mRNA-1
chr4_3	exon	72404921	72405119	72404921	ID=Msa0661190-mRNA-1:exon:21760;Parent=Msa0661190-mRNA-1
chr4_3	exon	72402977	72403581	72402977	ID=Msa0661190-mRNA-1:exon:21759;Parent=Msa0661190-mRNA-1
chr4_3	CDS	72405314	72405322	72405314	ID=Msa0661190-mRNA-1:cds;Parent=Msa0661190-mRNA-1
chr4_3	CDS	72404921	72405119	72404921	ID=Msa0661190-mRNA-1:cds;Parent=Msa0661190-mRNA-1
chr4_3	CDS	72402977	72403581	72402977	ID=Msa0661190-mRNA-1:cds;Parent=Msa0661190-mRNA-1

Gene Sequence

>Msa0661190

ATGAAAACGGTTAATATGAATTCACAAGAACAGTATGAACATGACGTGATGTTATATATAATATTGGTGCAACAGTTTTTAGAGATGGTTAGAATTTGTAATGCAATTGTTATGATTATGAGTCATTCTTCGATATGGTTTCACGAAAACCAAACTCTTAGGCAACGACTAGTAGATAGAGAAGGATTAAGAGGAGAATTTTTAGAGAGAAAATCAATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCGGAAGGATCAGAAACAGAAAGCAAAAAGGCCTCCAAGAAGGATGCCGCAAAGCTGGAAAAGCAACGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTCGAAGATGATCCCCTTGCTGTCAATTATGGTATTGTCCCGCTCATTGAGCTCCAATCGAAGACCCCTGTCAATGTCAACGACTGGACCCGAGTTGAGGCTCTCAATGATTCACTGGAGAACAAGCCGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCGTTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTCGAAGGTGTGGTTTCCATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGGTTATGATATCTTGTTACTTAGGTTTTGTGATTTTGTCAGTGTTTTGAATTTAGAGTTTGTGAGTTGTGATTGTTTAGGATTTTGA

Protein sequence

>Msa0661190

MKTVNMNSQEQYEHDVMLYIILVQQFLEMVRICNAIVMIMSHSSIWFHENQTLRQRLVDREGLRGEFLERKSMSTSESQEPTLSSEGSETESKKASKKDAAKLEKQRRREVAAATSATSTLSVEDDPLAVNYGIVPLIELQSKTPVNVNDWTRVEALNDSLENKPVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVGYDILLLRFCDFVSVLNLEFVSCDCLGF*