AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661190 MtrunA17_Chr1g0150111 96.471 170 6 0 73 242 1 170 6.08e-110 328
Msa0661190 MtrunA17_Chr5g0410321 44.949 198 69 3 63 260 52 209 3.28e-37 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661190 AT4G31180.1 41.398 186 91 4 75 242 2 187 1.01e-27 112
Msa0661190 AT4G31180.2 41.398 186 91 4 75 242 2 187 1.01e-27 112
Msa0661190 AT4G26870.1 42.262 168 90 5 100 266 23 184 5.86e-24 101

Find 68 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTTGCGGCATCCTTCT+TGG 0.168840 4_3:+72403481 None:intergenic
ATTCCAGCCGCTCCTATTAA+AGG 0.200895 4_3:-72403080 Msa0661190:CDS
TTCTTAGTCATCAGAGAAAA+TGG 0.279492 4_3:-72403218 Msa0661190:CDS
GATCCCCTTGCTGTCAATTA+TGG 0.290000 4_3:-72403392 Msa0661190:CDS
TTATGAGTCATTCTTCGATA+TGG 0.295020 4_3:-72404991 Msa0661190:CDS
TGTTGTGAGGCACCTTTAAT+AGG 0.308209 4_3:+72403068 None:intergenic
CACCGTACAGTGCTTGGTTC+AGG 0.346864 4_3:-72403192 Msa0661190:CDS
CTAGTCGTTGCCTAAGAGTT+TGG 0.356366 4_3:+72404957 None:intergenic
TTCACGAAAACCAAACTCTT+AGG 0.382846 4_3:-72404967 Msa0661190:CDS
GTCCAGTCGTTGACATTGAC+AGG 0.393463 4_3:+72403335 None:intergenic
ATCAGAAACAGAAAGCAAAA+AGG 0.395113 4_3:-72403507 Msa0661190:CDS
AGGTGGCGGCGGCAACTTCT+CGG 0.397158 4_3:+72403444 None:intergenic
GTTATGATATCTTGTTACTT+AGG 0.401643 4_3:-72403040 Msa0661190:CDS
CGTGATGTTATATATAATAT+TGG 0.407574 4_3:-72405062 Msa0661190:CDS
CAAGAAGGATGCCGCAAAGC+TGG 0.423709 4_3:-72403480 Msa0661190:CDS
GTAGATAGAGAAGGATTAAG+AGG 0.426898 4_3:-72404935 Msa0661190:CDS
CTTTGCGGCATCCTTCTTGG+AGG 0.431699 4_3:+72403484 None:intergenic
CATTGACAGGGGTCTTCGAT+TGG 0.443151 4_3:+72403348 None:intergenic
ATCTGCGGACTCACTAAATC+AGG 0.450583 4_3:+72403164 None:intergenic
AACGCCATCTTCTTCCCAAC+TGG 0.452718 4_3:+72403239 None:intergenic
GCCCTCCCACGGATTAGAAC+CGG 0.456675 4_3:+72403275 None:intergenic
TATTAAAGGTGCCTCACAAC+AGG 0.473545 4_3:-72403066 Msa0661190:CDS
TTGTTCTCTTAATATGAAAA+CGG 0.473995 4_3:-72405313 None:intergenic
TTTGTGAGTTGTGATTGTTT+AGG 0.489001 4_3:-72402984 Msa0661190:CDS
TGAGGCTCTCAATGATTCAC+TGG 0.499024 4_3:-72403306 Msa0661190:CDS
TGGTTTCACCGTACAGTGCT+TGG 0.499781 4_3:-72403198 Msa0661190:CDS
TTTAATAGGAGCGGCTGGAA+TGG 0.513685 4_3:+72403082 None:intergenic
GAGTCTATTGTCGATGTCGA+AGG 0.513770 4_3:-72403113 Msa0661190:CDS
GCACCTTTAATAGGAGCGGC+TGG 0.516328 4_3:+72403077 None:intergenic
CACAAGCTATTCGACCAGTT+GGG 0.517268 4_3:-72403253 Msa0661190:CDS
GCACAAGCTATTCGACCAGT+TGG 0.517849 4_3:-72403254 Msa0661190:CDS
GAATAGCTTGTGCCCTCCCA+CGG 0.535699 4_3:+72403264 None:intergenic
CGATGTAGCAGAGGTGGCGG+CGG 0.543849 4_3:+72403433 None:intergenic
AACAAGCCGGTTCTAATCCG+TGG 0.547533 4_3:-72403281 Msa0661190:CDS
CCCCTGTCAATGTCAACGAC+TGG 0.551263 4_3:-72403337 Msa0661190:CDS
TCGATTGGAGCTCAATGAGC+GGG 0.557785 4_3:+72403363 None:intergenic
AGTCGATGTAGCAGAGGTGG+CGG 0.572655 4_3:+72403430 None:intergenic
TCGACCAGTTGGGAAGAAGA+TGG 0.581394 4_3:-72403243 Msa0661190:CDS
AGACTCACGGCTGAGAGCGG+CGG 0.581736 4_3:+72403130 None:intergenic
AATCATTGAGAGCCTCAACT+CGG 0.583678 4_3:+72403312 None:intergenic
GAGAGTCGATGTAGCAGAGG+TGG 0.585897 4_3:+72403427 None:intergenic
TCCAGTCGTTGACATTGACA+GGG 0.592334 4_3:+72403336 None:intergenic
AGAGAGAGTCGATGTAGCAG+AGG 0.593608 4_3:+72403424 None:intergenic
TGATTTAGTGAGTCCGCAGA+TGG 0.596877 4_3:-72403162 Msa0661190:CDS
ATCATTGAGAGCCTCAACTC+GGG 0.599803 4_3:+72403313 None:intergenic
CAACGACTGGACCCGAGTTG+AGG 0.600329 4_3:-72403324 Msa0661190:CDS
TCAAGAGCCGACACTGTCAT+CGG 0.603493 4_3:-72403534 Msa0661190:CDS
GATCCTTCCGATGACAGTGT+CGG 0.605021 4_3:+72403527 None:intergenic
TGAGGCACCTTTAATAGGAG+CGG 0.608618 4_3:+72403073 None:intergenic
GCCGGTTCTAATCCGTGGGA+GGG 0.610769 4_3:-72403276 Msa0661190:CDS
TTCGATTGGAGCTCAATGAG+CGG 0.611035 4_3:+72403362 None:intergenic
TGATTCACTGGAGAACAAGC+CGG 0.613416 4_3:-72403294 Msa0661190:CDS
GCGGCAAATTTCACCATCTG+CGG 0.614321 4_3:+72403149 None:intergenic
ATACCATAATTGACAGCAAG+GGG 0.614733 4_3:+72403389 None:intergenic
ACAAGCCGGTTCTAATCCGT+GGG 0.615482 4_3:-72403280 Msa0661190:CDS
TATTGTCGATGTCGAAGGTG+TGG 0.616371 4_3:-72403108 Msa0661190:CDS
AATAGACTCACGGCTGAGAG+CGG 0.623488 4_3:+72403127 None:intergenic
AGCCGGTTCTAATCCGTGGG+AGG 0.623958 4_3:-72403277 Msa0661190:CDS
GAGCCGACACTGTCATCGGA+AGG 0.625324 4_3:-72403530 Msa0661190:CDS
CAACGACTAGTAGATAGAGA+AGG 0.629622 4_3:-72404944 Msa0661190:CDS
CAATACCATAATTGACAGCA+AGG 0.634292 4_3:+72403387 None:intergenic
TGCCTGAACCAAGCACTGTA+CGG 0.635520 4_3:+72403190 None:intergenic
ATCATAACCAACCTGTTGTG+AGG 0.639858 4_3:+72403055 None:intergenic
AAAGGTGCCTCACAACAGGT+TGG 0.643312 4_3:-72403062 Msa0661190:CDS
CGACATCGACAATAGACTCA+CGG 0.651944 4_3:+72403117 None:intergenic
AATACCATAATTGACAGCAA+GGG 0.690003 4_3:+72403388 None:intergenic
TGGCGGCGGCAACTTCTCGG+CGG 0.706873 4_3:+72403447 None:intergenic
CCAGTCGTTGACATTGACAG+GGG 0.731951 4_3:+72403337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTAATGTAATGACTT+TGG - chr4_3:72404039-72404058 Msa0661190:intron 15.0%
!!! TTTGATTGAAAATTTTACAA+TGG - chr4_3:72404146-72404165 Msa0661190:intron 15.0%
!! ATTCTTAAAGAATCTAAAAA+TGG + chr4_3:72404210-72404229 None:intergenic 15.0%
!!! GAGTTTAATTTTATCATATA+TGG + chr4_3:72404632-72404651 None:intergenic 15.0%
!! TAAATTTAATGTAATGACTT+TGG - chr4_3:72404039-72404058 Msa0661190:intron 15.0%
!!! TTTGATTGAAAATTTTACAA+TGG - chr4_3:72404146-72404165 Msa0661190:intron 15.0%
!! ATTCTTAAAGAATCTAAAAA+TGG + chr4_3:72404210-72404229 None:intergenic 15.0%
!!! GAGTTTAATTTTATCATATA+TGG + chr4_3:72404632-72404651 None:intergenic 15.0%
!!! TCAATACATGTTTCTTTTAT+AGG - chr4_3:72403158-72403177 Msa0661190:CDS 20.0%
!! CGTGATGTTATATATAATAT+TGG - chr4_3:72403215-72403234 Msa0661190:CDS 20.0%
!! TTCTTGAAGAAACTAAAAAT+TGG + chr4_3:72403939-72403958 None:intergenic 20.0%
!!! GTTGTATTTTTTCGTTTATT+GGG - chr4_3:72404061-72404080 Msa0661190:intron 20.0%
!! TTTGAAGAAAAAAAATGCAA+TGG - chr4_3:72404460-72404479 Msa0661190:intron 20.0%
!! TTGAAGAAAAAAAATGCAAT+GGG - chr4_3:72404461-72404480 Msa0661190:intron 20.0%
!! TAAGTACTTGAAAATTTACT+TGG - chr4_3:72404504-72404523 Msa0661190:intron 20.0%
!!! ATTAAGTTGAGATCAATTTT+TGG - chr4_3:72404531-72404550 Msa0661190:intron 20.0%
!!! TCAATACATGTTTCTTTTAT+AGG - chr4_3:72403158-72403177 Msa0661190:CDS 20.0%
!! CGTGATGTTATATATAATAT+TGG - chr4_3:72403215-72403234 Msa0661190:CDS 20.0%
!! TTCTTGAAGAAACTAAAAAT+TGG + chr4_3:72403939-72403958 None:intergenic 20.0%
!!! GTTGTATTTTTTCGTTTATT+GGG - chr4_3:72404061-72404080 Msa0661190:intron 20.0%
!! TTTGAAGAAAAAAAATGCAA+TGG - chr4_3:72404460-72404479 Msa0661190:intron 20.0%
!! TTGAAGAAAAAAAATGCAAT+GGG - chr4_3:72404461-72404480 Msa0661190:intron 20.0%
!! TAAGTACTTGAAAATTTACT+TGG - chr4_3:72404504-72404523 Msa0661190:intron 20.0%
!!! ATTAAGTTGAGATCAATTTT+TGG - chr4_3:72404531-72404550 Msa0661190:intron 20.0%
! TAATTAGTGATTACTCTCTA+TGG - chr4_3:72402999-72403018 Msa0661190:CDS 25.0%
!!! CTAATTCAATTGTGTTTTGA+TGG - chr4_3:72403040-72403059 Msa0661190:CDS 25.0%
!! AGATCTTTTCGTTTATTATG+TGG - chr4_3:72403432-72403451 Msa0661190:CDS 25.0%
!!! AATAAGTATTGAAGAACAAC+TGG - chr4_3:72403494-72403513 Msa0661190:CDS 25.0%
!!! GGTTGTATTTTTTCGTTTAT+TGG - chr4_3:72404060-72404079 Msa0661190:intron 25.0%
! CTTAAAGAATCTAAAAATGG+AGG + chr4_3:72404207-72404226 None:intergenic 25.0%
!! GGTATTTGTTAAAAGGATTT+AGG - chr4_3:72404319-72404338 Msa0661190:intron 25.0%
!! GTTGTATTTGTTAGCTTAAT+GGG - chr4_3:72404341-72404360 Msa0661190:intron 25.0%
!! AAAATTTTACACTGATGTTG+TGG - chr4_3:72404436-72404455 Msa0661190:intron 25.0%
! TGAAGAAAAAAAATGCAATG+GGG - chr4_3:72404462-72404481 Msa0661190:intron 25.0%
! TTGGTACTAATGTAATTTGA+TGG - chr4_3:72404550-72404569 Msa0661190:intron 25.0%
!! GATTATCTAACCATCATTTT+TGG - chr4_3:72404576-72404595 Msa0661190:intron 25.0%
! ATGATTAGTACCAAAAATGA+TGG + chr4_3:72404589-72404608 None:intergenic 25.0%
!! GTTATGATATCTTGTTACTT+AGG - chr4_3:72405237-72405256 Msa0661190:intron 25.0%
! TAATTAGTGATTACTCTCTA+TGG - chr4_3:72402999-72403018 Msa0661190:CDS 25.0%
!!! CTAATTCAATTGTGTTTTGA+TGG - chr4_3:72403040-72403059 Msa0661190:CDS 25.0%
!! AGATCTTTTCGTTTATTATG+TGG - chr4_3:72403432-72403451 Msa0661190:CDS 25.0%
!!! AATAAGTATTGAAGAACAAC+TGG - chr4_3:72403494-72403513 Msa0661190:CDS 25.0%
!!! GGTTGTATTTTTTCGTTTAT+TGG - chr4_3:72404060-72404079 Msa0661190:intron 25.0%
! CTTAAAGAATCTAAAAATGG+AGG + chr4_3:72404207-72404226 None:intergenic 25.0%
!! GGTATTTGTTAAAAGGATTT+AGG - chr4_3:72404319-72404338 Msa0661190:intron 25.0%
!! GTTGTATTTGTTAGCTTAAT+GGG - chr4_3:72404341-72404360 Msa0661190:intron 25.0%
!! AAAATTTTACACTGATGTTG+TGG - chr4_3:72404436-72404455 Msa0661190:intron 25.0%
! TGAAGAAAAAAAATGCAATG+GGG - chr4_3:72404462-72404481 Msa0661190:intron 25.0%
! TTGGTACTAATGTAATTTGA+TGG - chr4_3:72404550-72404569 Msa0661190:intron 25.0%
!! GATTATCTAACCATCATTTT+TGG - chr4_3:72404576-72404595 Msa0661190:intron 25.0%
! ATGATTAGTACCAAAAATGA+TGG + chr4_3:72404589-72404608 None:intergenic 25.0%
!! GTTATGATATCTTGTTACTT+AGG - chr4_3:72405237-72405256 Msa0661190:intron 25.0%
TACTCTCTATGGACAATTAT+TGG - chr4_3:72403010-72403029 Msa0661190:CDS 30.0%
!! GTTTTGATGGAAGAAAAAAG+AGG - chr4_3:72403053-72403072 Msa0661190:CDS 30.0%
TTATGAGTCATTCTTCGATA+TGG - chr4_3:72403286-72403305 Msa0661190:CDS 30.0%
! CATTCTAAGAATCGTGTTAT+TGG - chr4_3:72403543-72403562 Msa0661190:CDS 30.0%
AAAACATTTCGACATACTCA+GGG + chr4_3:72403645-72403664 None:intergenic 30.0%
AAAAACATTTCGACATACTC+AGG + chr4_3:72403646-72403665 None:intergenic 30.0%
! AAATTGGTTTCTACCAATAG+AGG + chr4_3:72403923-72403942 None:intergenic 30.0%
ACATTTATCAAACACCTAGT+AGG + chr4_3:72404090-72404109 None:intergenic 30.0%
TGTTTGATAAATGTCCTAAG+TGG - chr4_3:72404096-72404115 Msa0661190:intron 30.0%
AAATTCAAAGAACACCACTT+AGG + chr4_3:72404113-72404132 None:intergenic 30.0%
TACCATTTGAGCACAAAAAA+CGG + chr4_3:72404236-72404255 None:intergenic 30.0%
! TGAATCTTGTTTCTTGAGTT+TGG - chr4_3:72404267-72404286 Msa0661190:intron 30.0%
! GGTTGTATTTGTTAGCTTAA+TGG - chr4_3:72404340-72404359 Msa0661190:intron 30.0%
! TGTTTGTTAAGTGTTCTAAG+TGG - chr4_3:72404376-72404395 Msa0661190:intron 30.0%
! GTTTTCTCACATTGTTTGTT+TGG - chr4_3:72404690-72404709 Msa0661190:intron 30.0%
ATCAGAAACAGAAAGCAAAA+AGG - chr4_3:72404770-72404789 Msa0661190:intron 30.0%
AATACCATAATTGACAGCAA+GGG + chr4_3:72404892-72404911 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr4_3:72405059-72405078 Msa0661190:CDS 30.0%
TTTGTGAGTTGTGATTGTTT+AGG - chr4_3:72405293-72405312 Msa0661190:intron 30.0%
TACTCTCTATGGACAATTAT+TGG - chr4_3:72403010-72403029 Msa0661190:CDS 30.0%
!! GTTTTGATGGAAGAAAAAAG+AGG - chr4_3:72403053-72403072 Msa0661190:CDS 30.0%
TTATGAGTCATTCTTCGATA+TGG - chr4_3:72403286-72403305 Msa0661190:CDS 30.0%
! CATTCTAAGAATCGTGTTAT+TGG - chr4_3:72403543-72403562 Msa0661190:CDS 30.0%
AAAACATTTCGACATACTCA+GGG + chr4_3:72403645-72403664 None:intergenic 30.0%
AAAAACATTTCGACATACTC+AGG + chr4_3:72403646-72403665 None:intergenic 30.0%
! AAATTGGTTTCTACCAATAG+AGG + chr4_3:72403923-72403942 None:intergenic 30.0%
ACATTTATCAAACACCTAGT+AGG + chr4_3:72404090-72404109 None:intergenic 30.0%
TGTTTGATAAATGTCCTAAG+TGG - chr4_3:72404096-72404115 Msa0661190:intron 30.0%
AAATTCAAAGAACACCACTT+AGG + chr4_3:72404113-72404132 None:intergenic 30.0%
TACCATTTGAGCACAAAAAA+CGG + chr4_3:72404236-72404255 None:intergenic 30.0%
! TGAATCTTGTTTCTTGAGTT+TGG - chr4_3:72404267-72404286 Msa0661190:intron 30.0%
! GGTTGTATTTGTTAGCTTAA+TGG - chr4_3:72404340-72404359 Msa0661190:intron 30.0%
! TGTTTGTTAAGTGTTCTAAG+TGG - chr4_3:72404376-72404395 Msa0661190:intron 30.0%
! GTTTTCTCACATTGTTTGTT+TGG - chr4_3:72404690-72404709 Msa0661190:intron 30.0%
ATCAGAAACAGAAAGCAAAA+AGG - chr4_3:72404770-72404789 Msa0661190:intron 30.0%
AATACCATAATTGACAGCAA+GGG + chr4_3:72404892-72404911 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr4_3:72405059-72405078 Msa0661190:CDS 30.0%
TTTGTGAGTTGTGATTGTTT+AGG - chr4_3:72405293-72405312 Msa0661190:intron 30.0%
TTCACGAAAACCAAACTCTT+AGG - chr4_3:72403310-72403329 Msa0661190:CDS 35.0%
GTAGATAGAGAAGGATTAAG+AGG - chr4_3:72403342-72403361 Msa0661190:CDS 35.0%
CACATATGACATCATTTCGT+TGG + chr4_3:72403389-72403408 None:intergenic 35.0%
ATGTGTTAATCAACTTCGCA+TGG - chr4_3:72403404-72403423 Msa0661190:CDS 35.0%
! TGGCTTTCTATTTTCACGAT+CGG - chr4_3:72403563-72403582 Msa0661190:intron 35.0%
GACAGGATATGATAAGAGTT+TGG + chr4_3:72403595-72403614 None:intergenic 35.0%
GATTTGAAGAAGAACGAGAT+TGG + chr4_3:72403817-72403836 None:intergenic 35.0%
!!! TTCCGTTTTTTGTGCTCAAA+TGG - chr4_3:72404231-72404250 Msa0661190:intron 35.0%
TTTAACAAATACCAGCACAG+AGG + chr4_3:72404312-72404331 None:intergenic 35.0%
! CTGTGCTGGTATTTGTTAAA+AGG - chr4_3:72404312-72404331 Msa0661190:intron 35.0%
ACACTTAACAAACACCTAGA+GGG + chr4_3:72404370-72404389 None:intergenic 35.0%
AACACTTAACAAACACCTAG+AGG + chr4_3:72404371-72404390 None:intergenic 35.0%
GAAAAAAAATGCAATGGGGT+TGG - chr4_3:72404466-72404485 Msa0661190:intron 35.0%
TATAATTCAAGCTCAGCAAG+AGG - chr4_3:72404656-72404675 Msa0661190:intron 35.0%
ATAATTCAAGCTCAGCAAGA+GGG - chr4_3:72404657-72404676 Msa0661190:intron 35.0%
! TCACATTGTTTGTTTGGTTC+AGG - chr4_3:72404696-72404715 Msa0661190:intron 35.0%
ATACCATAATTGACAGCAAG+GGG + chr4_3:72404891-72404910 None:intergenic 35.0%
CAATACCATAATTGACAGCA+AGG + chr4_3:72404893-72404912 None:intergenic 35.0%
TTCACGAAAACCAAACTCTT+AGG - chr4_3:72403310-72403329 Msa0661190:CDS 35.0%
GTAGATAGAGAAGGATTAAG+AGG - chr4_3:72403342-72403361 Msa0661190:CDS 35.0%
CACATATGACATCATTTCGT+TGG + chr4_3:72403389-72403408 None:intergenic 35.0%
ATGTGTTAATCAACTTCGCA+TGG - chr4_3:72403404-72403423 Msa0661190:CDS 35.0%
! TGGCTTTCTATTTTCACGAT+CGG - chr4_3:72403563-72403582 Msa0661190:intron 35.0%
GACAGGATATGATAAGAGTT+TGG + chr4_3:72403595-72403614 None:intergenic 35.0%
GATTTGAAGAAGAACGAGAT+TGG + chr4_3:72403817-72403836 None:intergenic 35.0%
!!! TTCCGTTTTTTGTGCTCAAA+TGG - chr4_3:72404231-72404250 Msa0661190:intron 35.0%
TTTAACAAATACCAGCACAG+AGG + chr4_3:72404312-72404331 None:intergenic 35.0%
! CTGTGCTGGTATTTGTTAAA+AGG - chr4_3:72404312-72404331 Msa0661190:intron 35.0%
ACACTTAACAAACACCTAGA+GGG + chr4_3:72404370-72404389 None:intergenic 35.0%
AACACTTAACAAACACCTAG+AGG + chr4_3:72404371-72404390 None:intergenic 35.0%
GAAAAAAAATGCAATGGGGT+TGG - chr4_3:72404466-72404485 Msa0661190:intron 35.0%
TATAATTCAAGCTCAGCAAG+AGG - chr4_3:72404656-72404675 Msa0661190:intron 35.0%
ATAATTCAAGCTCAGCAAGA+GGG - chr4_3:72404657-72404676 Msa0661190:intron 35.0%
! TCACATTGTTTGTTTGGTTC+AGG - chr4_3:72404696-72404715 Msa0661190:intron 35.0%
ATACCATAATTGACAGCAAG+GGG + chr4_3:72404891-72404910 None:intergenic 35.0%
CAATACCATAATTGACAGCA+AGG + chr4_3:72404893-72404912 None:intergenic 35.0%
!! GGTGCAACAGTTTTTAGAGA+TGG - chr4_3:72403236-72403255 Msa0661190:CDS 40.0%
CAACGACTAGTAGATAGAGA+AGG - chr4_3:72403333-72403352 Msa0661190:CDS 40.0%
CTTTCAACTTTCCCTCAGTA+CGG + chr4_3:72403464-72403483 None:intergenic 40.0%
GAGGGAAAGTTGAAAGAAGA+TGG - chr4_3:72403468-72403487 Msa0661190:CDS 40.0%
! GGCTTTCTATTTTCACGATC+GGG - chr4_3:72403564-72403583 Msa0661190:intron 40.0%
! TTTTCACAGTTGTCAGCACT+TGG + chr4_3:72403718-72403737 None:intergenic 40.0%
TGAGAGTTTCGGAGAAATGA+GGG + chr4_3:72403746-72403765 None:intergenic 40.0%
ATGAGAGTTTCGGAGAAATG+AGG + chr4_3:72403747-72403766 None:intergenic 40.0%
AAGAAGAACGAGATTGGAGA+TGG + chr4_3:72403811-72403830 None:intergenic 40.0%
GAACCTTCGATTTCCTCTAT+TGG - chr4_3:72403907-72403926 Msa0661190:intron 40.0%
CTACCAATAGAGGAAATCGA+AGG + chr4_3:72403913-72403932 None:intergenic 40.0%
ATCATATATGGTGCAGTCAC+TGG + chr4_3:72404620-72404639 None:intergenic 40.0%
AATCATTGAGAGCCTCAACT+CGG + chr4_3:72404968-72404987 None:intergenic 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr4_3:72405212-72405231 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr4_3:72405211-72405230 Msa0661190:intron 40.0%
ATCATAACCAACCTGTTGTG+AGG + chr4_3:72405225-72405244 None:intergenic 40.0%
!! GGTGCAACAGTTTTTAGAGA+TGG - chr4_3:72403236-72403255 Msa0661190:CDS 40.0%
CAACGACTAGTAGATAGAGA+AGG - chr4_3:72403333-72403352 Msa0661190:CDS 40.0%
CTTTCAACTTTCCCTCAGTA+CGG + chr4_3:72403464-72403483 None:intergenic 40.0%
GAGGGAAAGTTGAAAGAAGA+TGG - chr4_3:72403468-72403487 Msa0661190:CDS 40.0%
! GGCTTTCTATTTTCACGATC+GGG - chr4_3:72403564-72403583 Msa0661190:intron 40.0%
! TTTTCACAGTTGTCAGCACT+TGG + chr4_3:72403718-72403737 None:intergenic 40.0%
TGAGAGTTTCGGAGAAATGA+GGG + chr4_3:72403746-72403765 None:intergenic 40.0%
ATGAGAGTTTCGGAGAAATG+AGG + chr4_3:72403747-72403766 None:intergenic 40.0%
AAGAAGAACGAGATTGGAGA+TGG + chr4_3:72403811-72403830 None:intergenic 40.0%
GAACCTTCGATTTCCTCTAT+TGG - chr4_3:72403907-72403926 Msa0661190:intron 40.0%
CTACCAATAGAGGAAATCGA+AGG + chr4_3:72403913-72403932 None:intergenic 40.0%
ATCATATATGGTGCAGTCAC+TGG + chr4_3:72404620-72404639 None:intergenic 40.0%
AATCATTGAGAGCCTCAACT+CGG + chr4_3:72404968-72404987 None:intergenic 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr4_3:72405212-72405231 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr4_3:72405211-72405230 Msa0661190:intron 40.0%
ATCATAACCAACCTGTTGTG+AGG + chr4_3:72405225-72405244 None:intergenic 40.0%
CTAGTCGTTGCCTAAGAGTT+TGG + chr4_3:72403323-72403342 None:intergenic 45.0%
GGAGTGAGTGATGAGAGTTT+CGG + chr4_3:72403757-72403776 None:intergenic 45.0%
GGCGAAGAAGAAAAAGAACG+CGG + chr4_3:72403783-72403802 None:intergenic 45.0%
! CGTTTATTGGGTTGCCTACT+AGG - chr4_3:72404073-72404092 Msa0661190:intron 45.0%
AATGCAATGGGGTTGGAATG+AGG - chr4_3:72404473-72404492 Msa0661190:intron 45.0%
ATGCAATGGGGTTGGAATGA+GGG - chr4_3:72404474-72404493 Msa0661190:intron 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr4_3:72404782-72404801 Msa0661190:intron 45.0%
! GATCCCCTTGCTGTCAATTA+TGG - chr4_3:72404885-72404904 Msa0661190:intron 45.0%
TTCGATTGGAGCTCAATGAG+CGG + chr4_3:72404918-72404937 None:intergenic 45.0%
TCCAGTCGTTGACATTGACA+GGG + chr4_3:72404944-72404963 None:intergenic 45.0%
ATCATTGAGAGCCTCAACTC+GGG + chr4_3:72404967-72404986 None:intergenic 45.0%
TGAGGCTCTCAATGATTCAC+TGG - chr4_3:72404971-72404990 Msa0661190:CDS 45.0%
TGATTCACTGGAGAACAAGC+CGG - chr4_3:72404983-72405002 Msa0661190:CDS 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr4_3:72405024-72405043 Msa0661190:CDS 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr4_3:72405116-72405135 None:intergenic 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr4_3:72405115-72405134 Msa0661190:intron 45.0%
CGACATCGACAATAGACTCA+CGG + chr4_3:72405163-72405182 None:intergenic 45.0%
GAGTCTATTGTCGATGTCGA+AGG - chr4_3:72405164-72405183 Msa0661190:intron 45.0%
TATTGTCGATGTCGAAGGTG+TGG - chr4_3:72405169-72405188 Msa0661190:intron 45.0%
TTTAATAGGAGCGGCTGGAA+TGG + chr4_3:72405198-72405217 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr4_3:72405197-72405216 Msa0661190:intron 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr4_3:72405207-72405226 None:intergenic 45.0%
CTAGTCGTTGCCTAAGAGTT+TGG + chr4_3:72403323-72403342 None:intergenic 45.0%
GGAGTGAGTGATGAGAGTTT+CGG + chr4_3:72403757-72403776 None:intergenic 45.0%
GGCGAAGAAGAAAAAGAACG+CGG + chr4_3:72403783-72403802 None:intergenic 45.0%
! CGTTTATTGGGTTGCCTACT+AGG - chr4_3:72404073-72404092 Msa0661190:intron 45.0%
AATGCAATGGGGTTGGAATG+AGG - chr4_3:72404473-72404492 Msa0661190:intron 45.0%
ATGCAATGGGGTTGGAATGA+GGG - chr4_3:72404474-72404493 Msa0661190:intron 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr4_3:72404782-72404801 Msa0661190:intron 45.0%
! GATCCCCTTGCTGTCAATTA+TGG - chr4_3:72404885-72404904 Msa0661190:intron 45.0%
TTCGATTGGAGCTCAATGAG+CGG + chr4_3:72404918-72404937 None:intergenic 45.0%
TCCAGTCGTTGACATTGACA+GGG + chr4_3:72404944-72404963 None:intergenic 45.0%
ATCATTGAGAGCCTCAACTC+GGG + chr4_3:72404967-72404986 None:intergenic 45.0%
TGAGGCTCTCAATGATTCAC+TGG - chr4_3:72404971-72404990 Msa0661190:CDS 45.0%
TGATTCACTGGAGAACAAGC+CGG - chr4_3:72404983-72405002 Msa0661190:CDS 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr4_3:72405024-72405043 Msa0661190:CDS 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr4_3:72405116-72405135 None:intergenic 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr4_3:72405115-72405134 Msa0661190:intron 45.0%
CGACATCGACAATAGACTCA+CGG + chr4_3:72405163-72405182 None:intergenic 45.0%
GAGTCTATTGTCGATGTCGA+AGG - chr4_3:72405164-72405183 Msa0661190:intron 45.0%
TATTGTCGATGTCGAAGGTG+TGG - chr4_3:72405169-72405188 Msa0661190:intron 45.0%
TTTAATAGGAGCGGCTGGAA+TGG + chr4_3:72405198-72405217 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr4_3:72405197-72405216 Msa0661190:intron 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr4_3:72405207-72405226 None:intergenic 45.0%
TCAACTTTCCCTCAGTACGG+AGG + chr4_3:72403461-72403480 None:intergenic 50.0%
GGTCAGGATAGGATAGAGAC+AGG + chr4_3:72403612-72403631 None:intergenic 50.0%
! GTGCGTTTGATGGTCAGGAT+AGG + chr4_3:72403623-72403642 None:intergenic 50.0%
CATACTCAGGGTGCGTTTGA+TGG + chr4_3:72403633-72403652 None:intergenic 50.0%
AGAAGAAAAAGAACGCGGCG+AGG + chr4_3:72403778-72403797 None:intergenic 50.0%
ACGAGATTGGAGATGGTGTG+TGG + chr4_3:72403804-72403823 None:intergenic 50.0%
!! AGCTTAATGGGTTGCCCTCT+AGG - chr4_3:72404353-72404372 Msa0661190:intron 50.0%
TCAAGAGCCGACACTGTCAT+CGG - chr4_3:72404743-72404762 Msa0661190:intron 50.0%
GATCCTTCCGATGACAGTGT+CGG + chr4_3:72404753-72404772 None:intergenic 50.0%
!!! GCGTTGCTTTTCCAGCTTTG+CGG + chr4_3:72404811-72404830 None:intergenic 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr4_3:72404856-72404875 None:intergenic 50.0%
TCGATTGGAGCTCAATGAGC+GGG + chr4_3:72404917-72404936 None:intergenic 50.0%
CATTGACAGGGGTCTTCGAT+TGG + chr4_3:72404932-72404951 None:intergenic 50.0%
CCAGTCGTTGACATTGACAG+GGG + chr4_3:72404943-72404962 None:intergenic 50.0%
GTCCAGTCGTTGACATTGAC+AGG + chr4_3:72404945-72404964 None:intergenic 50.0%
! AACAAGCCGGTTCTAATCCG+TGG - chr4_3:72404996-72405015 Msa0661190:CDS 50.0%
! ACAAGCCGGTTCTAATCCGT+GGG - chr4_3:72404997-72405016 Msa0661190:CDS 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr4_3:72405023-72405042 Msa0661190:CDS 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr4_3:72405034-72405053 Msa0661190:CDS 50.0%
AACGCCATCTTCTTCCCAAC+TGG + chr4_3:72405041-72405060 None:intergenic 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr4_3:72405079-72405098 Msa0661190:CDS 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr4_3:72405090-72405109 None:intergenic 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr4_3:72405131-72405150 None:intergenic 50.0%
AATAGACTCACGGCTGAGAG+CGG + chr4_3:72405153-72405172 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr4_3:72405215-72405234 Msa0661190:intron 50.0%
TCAACTTTCCCTCAGTACGG+AGG + chr4_3:72403461-72403480 None:intergenic 50.0%
GGTCAGGATAGGATAGAGAC+AGG + chr4_3:72403612-72403631 None:intergenic 50.0%
! GTGCGTTTGATGGTCAGGAT+AGG + chr4_3:72403623-72403642 None:intergenic 50.0%
CATACTCAGGGTGCGTTTGA+TGG + chr4_3:72403633-72403652 None:intergenic 50.0%
AGAAGAAAAAGAACGCGGCG+AGG + chr4_3:72403778-72403797 None:intergenic 50.0%
ACGAGATTGGAGATGGTGTG+TGG + chr4_3:72403804-72403823 None:intergenic 50.0%
!! AGCTTAATGGGTTGCCCTCT+AGG - chr4_3:72404353-72404372 Msa0661190:intron 50.0%
TCAAGAGCCGACACTGTCAT+CGG - chr4_3:72404743-72404762 Msa0661190:intron 50.0%
GATCCTTCCGATGACAGTGT+CGG + chr4_3:72404753-72404772 None:intergenic 50.0%
!!! GCGTTGCTTTTCCAGCTTTG+CGG + chr4_3:72404811-72404830 None:intergenic 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr4_3:72404856-72404875 None:intergenic 50.0%
TCGATTGGAGCTCAATGAGC+GGG + chr4_3:72404917-72404936 None:intergenic 50.0%
CATTGACAGGGGTCTTCGAT+TGG + chr4_3:72404932-72404951 None:intergenic 50.0%
CCAGTCGTTGACATTGACAG+GGG + chr4_3:72404943-72404962 None:intergenic 50.0%
GTCCAGTCGTTGACATTGAC+AGG + chr4_3:72404945-72404964 None:intergenic 50.0%
! AACAAGCCGGTTCTAATCCG+TGG - chr4_3:72404996-72405015 Msa0661190:CDS 50.0%
! ACAAGCCGGTTCTAATCCGT+GGG - chr4_3:72404997-72405016 Msa0661190:CDS 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr4_3:72405023-72405042 Msa0661190:CDS 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr4_3:72405034-72405053 Msa0661190:CDS 50.0%
AACGCCATCTTCTTCCCAAC+TGG + chr4_3:72405041-72405060 None:intergenic 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr4_3:72405079-72405098 Msa0661190:CDS 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr4_3:72405090-72405109 None:intergenic 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr4_3:72405131-72405150 None:intergenic 50.0%
AATAGACTCACGGCTGAGAG+CGG + chr4_3:72405153-72405172 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr4_3:72405215-72405234 Msa0661190:intron 50.0%
ATGTGGTCTCCTCCGTACTG+AGG - chr4_3:72403449-72403468 Msa0661190:CDS 55.0%
TGTGGTCTCCTCCGTACTGA+GGG - chr4_3:72403450-72403469 Msa0661190:CDS 55.0%
! TCAGGGTGCGTTTGATGGTC+AGG + chr4_3:72403628-72403647 None:intergenic 55.0%
GTGATGTGATGCCTCTGTGC+TGG - chr4_3:72404298-72404317 Msa0661190:intron 55.0%
CTTTGCGGCATCCTTCTTGG+AGG + chr4_3:72404796-72404815 None:intergenic 55.0%
CAGCTTTGCGGCATCCTTCT+TGG + chr4_3:72404799-72404818 None:intergenic 55.0%
CAAGAAGGATGCCGCAAAGC+TGG - chr4_3:72404797-72404816 Msa0661190:intron 55.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr4_3:72404850-72404869 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr4_3:72404853-72404872 None:intergenic 55.0%
CCCCTGTCAATGTCAACGAC+TGG - chr4_3:72404940-72404959 Msa0661190:CDS 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr4_3:72405016-72405035 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr4_3:72405085-72405104 Msa0661190:CDS 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr4_3:72405203-72405222 None:intergenic 55.0%
ATGTGGTCTCCTCCGTACTG+AGG - chr4_3:72403449-72403468 Msa0661190:CDS 55.0%
TGTGGTCTCCTCCGTACTGA+GGG - chr4_3:72403450-72403469 Msa0661190:CDS 55.0%
! TCAGGGTGCGTTTGATGGTC+AGG + chr4_3:72403628-72403647 None:intergenic 55.0%
GTGATGTGATGCCTCTGTGC+TGG - chr4_3:72404298-72404317 Msa0661190:intron 55.0%
CTTTGCGGCATCCTTCTTGG+AGG + chr4_3:72404796-72404815 None:intergenic 55.0%
CAGCTTTGCGGCATCCTTCT+TGG + chr4_3:72404799-72404818 None:intergenic 55.0%
CAAGAAGGATGCCGCAAAGC+TGG - chr4_3:72404797-72404816 Msa0661190:intron 55.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr4_3:72404850-72404869 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr4_3:72404853-72404872 None:intergenic 55.0%
CCCCTGTCAATGTCAACGAC+TGG - chr4_3:72404940-72404959 Msa0661190:CDS 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr4_3:72405016-72405035 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr4_3:72405085-72405104 Msa0661190:CDS 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr4_3:72405203-72405222 None:intergenic 55.0%
GAGCCGACACTGTCATCGGA+AGG - chr4_3:72404747-72404766 Msa0661190:intron 60.0%
CAACGACTGGACCCGAGTTG+AGG - chr4_3:72404953-72404972 Msa0661190:CDS 60.0%
! AGCCGGTTCTAATCCGTGGG+AGG - chr4_3:72405000-72405019 Msa0661190:CDS 60.0%
! GCCGGTTCTAATCCGTGGGA+GGG - chr4_3:72405001-72405020 Msa0661190:CDS 60.0%
!! GCCCTCCCACGGATTAGAAC+CGG + chr4_3:72405005-72405024 None:intergenic 60.0%
GAGCCGACACTGTCATCGGA+AGG - chr4_3:72404747-72404766 Msa0661190:intron 60.0%
CAACGACTGGACCCGAGTTG+AGG - chr4_3:72404953-72404972 Msa0661190:CDS 60.0%
! AGCCGGTTCTAATCCGTGGG+AGG - chr4_3:72405000-72405019 Msa0661190:CDS 60.0%
! GCCGGTTCTAATCCGTGGGA+GGG - chr4_3:72405001-72405020 Msa0661190:CDS 60.0%
!! GCCCTCCCACGGATTAGAAC+CGG + chr4_3:72405005-72405024 None:intergenic 60.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr4_3:72404836-72404855 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr4_3:72404847-72404866 None:intergenic 65.0%
AGACTCACGGCTGAGAGCGG+CGG + chr4_3:72405150-72405169 None:intergenic 65.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr4_3:72404836-72404855 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr4_3:72404847-72404866 None:intergenic 65.0%
AGACTCACGGCTGAGAGCGG+CGG + chr4_3:72405150-72405169 None:intergenic 65.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr4_3:72404833-72404852 None:intergenic 70.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr4_3:72404833-72404852 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 72402977 72405322 72402977 ID=Msa0661190;Name=Msa0661190
chr4_3 mRNA 72402977 72405322 72402977 ID=Msa0661190-mRNA-1;Parent=Msa0661190;Name=Msa0661190-mRNA-1;_AED=0.64;_eAED=0.64;_QI=0|0|0|0.33|1|1|3|0|270
chr4_3 exon 72405314 72405322 72405314 ID=Msa0661190-mRNA-1:exon:21761;Parent=Msa0661190-mRNA-1
chr4_3 exon 72404921 72405119 72404921 ID=Msa0661190-mRNA-1:exon:21760;Parent=Msa0661190-mRNA-1
chr4_3 exon 72402977 72403581 72402977 ID=Msa0661190-mRNA-1:exon:21759;Parent=Msa0661190-mRNA-1
chr4_3 CDS 72405314 72405322 72405314 ID=Msa0661190-mRNA-1:cds;Parent=Msa0661190-mRNA-1
chr4_3 CDS 72404921 72405119 72404921 ID=Msa0661190-mRNA-1:cds;Parent=Msa0661190-mRNA-1
chr4_3 CDS 72402977 72403581 72402977 ID=Msa0661190-mRNA-1:cds;Parent=Msa0661190-mRNA-1
Gene Sequence

>Msa0661190

ATGAAAACGGTTAATATGAATTCACAAGAACAGTATGAACATGACGTGATGTTATATATAATATTGGTGCAACAGTTTTTAGAGATGGTTAGAATTTGTAATGCAATTGTTATGATTATGAGTCATTCTTCGATATGGTTTCACGAAAACCAAACTCTTAGGCAACGACTAGTAGATAGAGAAGGATTAAGAGGAGAATTTTTAGAGAGAAAATCAATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCGGAAGGATCAGAAACAGAAAGCAAAAAGGCCTCCAAGAAGGATGCCGCAAAGCTGGAAAAGCAACGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTCGAAGATGATCCCCTTGCTGTCAATTATGGTATTGTCCCGCTCATTGAGCTCCAATCGAAGACCCCTGTCAATGTCAACGACTGGACCCGAGTTGAGGCTCTCAATGATTCACTGGAGAACAAGCCGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCGTTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTCGAAGGTGTGGTTTCCATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGGTTATGATATCTTGTTACTTAGGTTTTGTGATTTTGTCAGTGTTTTGAATTTAGAGTTTGTGAGTTGTGATTGTTTAGGATTTTGA

Protein sequence

>Msa0661190

MKTVNMNSQEQYEHDVMLYIILVQQFLEMVRICNAIVMIMSHSSIWFHENQTLRQRLVDREGLRGEFLERKSMSTSESQEPTLSSEGSETESKKASKKDAAKLEKQRRREVAAATSATSTLSVEDDPLAVNYGIVPLIELQSKTPVNVNDWTRVEALNDSLENKPVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVGYDILLLRFCDFVSVLNLEFVSCDCLGF*