AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355270 MtrunA17_Chr3g0115601 97.270 293 7 1 1 293 1 292 0.0 602
Msa1355270 MtrunA17_Chr5g0425471 72.297 296 77 2 3 293 4 299 2.31e-159 463
Msa1355270 MtrunA17_Chr5g0425431 72.759 290 73 2 10 293 8 297 3.21e-158 460
Msa1355270 MtrunA17_Chr5g0425531 71.812 298 77 3 3 293 4 301 2.63e-156 455
Msa1355270 MtrunA17_Chr5g0425451 71.284 296 80 2 3 293 4 299 2.89e-155 452
Msa1355270 MtrunA17_Chr1g0194841 57.544 285 110 3 9 293 5 278 5.16e-118 356
Msa1355270 MtrunA17_Chr7g0269871 57.045 291 117 4 3 293 1 283 6.11e-118 356
Msa1355270 MtrunA17_Chr2g0294751 57.491 287 111 4 7 293 8 283 6.83e-118 355
Msa1355270 MtrunA17_Chr1g0207281 56.989 279 117 2 15 293 26 301 5.74e-116 352
Msa1355270 MtrunA17_Chr5g0411571 56.401 289 114 5 12 293 11 294 1.53e-108 332
Msa1355270 MtrunA17_Chr4g0050591 52.542 295 126 5 5 293 12 298 1.22e-104 322
Msa1355270 MtrunA17_Chr2g0278761 52.189 297 128 5 3 293 11 299 4.06e-104 320
Msa1355270 MtrunA17_Chr3g0104081 31.104 299 133 11 45 293 22 297 6.33e-27 110
Msa1355270 MtrunA17_Chr2g0292341 29.097 299 139 11 45 293 30 305 8.41e-24 101
Msa1355270 MtrunA17_Chr3g0118971 28.221 326 156 14 20 293 4 303 2.24e-22 97.1
Msa1355270 MtrunA17_Chr5g0429541 28.763 299 141 10 45 293 5 281 7.74e-22 95.5
Msa1355270 MtrunA17_Chr7g0253561 27.759 299 143 11 45 293 4 279 7.84e-22 95.5
Msa1355270 MtrunA17_Chr5g0429581 28.859 298 138 12 47 293 7 281 7.96e-22 95.5
Msa1355270 MtrunA17_Chr6g0461191 26.948 308 174 9 25 293 8 303 8.04e-22 95.5
Msa1355270 MtrunA17_Chr6g0461221 25.000 312 183 9 21 293 5 304 2.37e-19 88.2
Msa1355270 MtrunA17_Chr7g0253551 27.304 293 145 12 45 293 29 297 7.20e-18 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355270 AT1G78060.1 73.308 266 70 1 29 293 22 287 3.07e-146 429
Msa1355270 AT3G19620.1 57.895 285 116 4 9 293 6 286 3.84e-121 365
Msa1355270 AT5G49360.1 57.746 284 114 3 10 293 14 291 3.32e-116 352
Msa1355270 AT1G02640.1 55.749 287 120 2 7 293 6 285 1.13e-115 350
Msa1355270 AT5G64570.3 54.110 292 127 5 5 293 16 303 6.08e-109 328
Msa1355270 AT5G64570.1 54.110 292 127 5 5 293 16 303 5.13e-107 328
Msa1355270 AT5G09730.1 54.671 289 125 5 7 293 9 293 1.78e-106 327
Msa1355270 AT5G10560.1 53.821 301 116 5 12 293 8 304 1.01e-103 320
Msa1355270 AT5G64570.2 57.047 149 60 3 145 293 1 145 1.85e-58 197
Msa1355270 AT3G47000.3 30.333 300 134 12 45 293 10 285 3.33e-25 104
Msa1355270 AT3G47000.1 30.333 300 134 12 45 293 10 285 5.47e-25 105
Msa1355270 AT3G47040.3 30.169 295 153 12 39 293 4 285 2.35e-24 102
Msa1355270 AT3G47040.4 29.693 293 157 11 39 293 4 285 2.64e-24 102
Msa1355270 AT3G47050.2 29.085 306 142 11 39 293 4 285 3.36e-23 98.6
Msa1355270 AT3G47050.1 29.085 306 142 11 39 293 4 285 1.06e-22 98.2
Msa1355270 AT3G47010.4 27.575 301 147 11 42 293 8 286 4.62e-20 90.1
Msa1355270 AT3G47010.1 27.575 301 147 11 42 293 8 286 4.86e-20 90.5
Msa1355270 AT3G47010.2 27.575 301 147 11 42 293 8 286 5.19e-20 90.5
Msa1355270 AT3G62710.1 26.333 300 147 10 45 293 38 314 1.55e-19 89.0

Find 213 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCAAACATAAACATATTT+AGG 0.139750 tig0014622:-26900 Msa1355270:CDS
AAGCAATGGGGATGACATTT+TGG 0.141480 tig0014622:-26924 Msa1355270:CDS
GCTTCCCCTTTAACTCTTCT+AGG 0.180542 tig0014622:-24792 Msa1355270:three_prime_UTR
TTCTAAGCGACCAGTTATTT+TGG 0.210219 tig0014622:-24502 Msa1355270:three_prime_UTR
TTTATGAAACATGATTTATT+TGG 0.214097 tig0014622:-23247 Msa1355270:three_prime_UTR
AACTGGTCGCTTAGAAGTTT+TGG 0.215942 tig0014622:+24509 None:intergenic
GTAATGTGATTCCAGTTTAA+TGG 0.220441 tig0014622:-23199 Msa1355270:three_prime_UTR
GGAACTTTAATGTAATCTTT+TGG 0.232449 tig0014622:+23859 None:intergenic
GTGAAGCAGTGTTCTTTAAA+AGG 0.237863 tig0014622:+24871 None:intergenic
TTATTTATTTAGATGATCTA+TGG 0.249386 tig0014622:-23160 Msa1355270:three_prime_UTR
TGAAACTAATTTGTACCTTA+TGG 0.259642 tig0014622:+23636 None:intergenic
TAGTTTCCTAGAAGAGTTAA+AGG 0.263259 tig0014622:+24786 None:intergenic
GGAAGCTTTGGGTTGCAAAA+TGG 0.269364 tig0014622:+28564 None:intergenic
TGTGCTTATAACCGTGTAAA+TGG 0.271364 tig0014622:-26395 Msa1355270:CDS
ATAAAATTGGAGGTATTATC+TGG 0.280329 tig0014622:-24431 Msa1355270:three_prime_UTR
ATGCCAAATGGAAGCTTTGC+TGG 0.286297 tig0014622:+24966 None:intergenic
ACATTTCACTGCCTATGATT+TGG 0.297124 tig0014622:-26728 Msa1355270:CDS
GGTCCTACGGTGTATGAATT+TGG 0.304426 tig0014622:-23766 Msa1355270:three_prime_UTR
CTTTGAGTGATCGGAAGCTT+TGG 0.307325 tig0014622:+28552 None:intergenic
TCCCTAAATATGTTTATGTT+TGG 0.312006 tig0014622:+26898 None:intergenic
CAATTGTTTCATAGGACTTC+CGG 0.316813 tig0014622:+23492 None:intergenic
AAGCTTCCATTTGGCATGAT+TGG 0.317533 tig0014622:-24960 Msa1355270:three_prime_UTR
GATTATGTTGTTCTTGTTAT+GGG 0.323709 tig0014622:-24618 Msa1355270:three_prime_UTR
TATGCTGTTTCCTATGTTAG+AGG 0.328224 tig0014622:-26817 Msa1355270:CDS
TGGAAATGAAATAGGCAATT+GGG 0.344326 tig0014622:-26978 Msa1355270:intron
AAACCTACCAATTGTTTCAT+AGG 0.347298 tig0014622:+23484 None:intergenic
TCATTCGTCCACTCATTTGA+TGG 0.350391 tig0014622:-23674 Msa1355270:three_prime_UTR
TTAGCTGAACTAATATCTAT+AGG 0.354850 tig0014622:+24462 None:intergenic
AGATTATGTTGTTCTTGTTA+TGG 0.355606 tig0014622:-24619 Msa1355270:three_prime_UTR
CTTCAAGGTGATTCCTTTCA+AGG 0.358682 tig0014622:-26793 Msa1355270:CDS
AAAGGGGAAGCATTGGCATT+AGG 0.364823 tig0014622:+24804 None:intergenic
TTGCTGGATTTCCATCAAAT+AGG 0.367114 tig0014622:+24982 None:intergenic
TACAAATTAGTTTCAGAGTT+AGG 0.368724 tig0014622:-23628 Msa1355270:three_prime_UTR
GAGTCTTGAAACAAGGTCTT+TGG 0.370001 tig0014622:+28527 None:intergenic
GAATCGAATAACAAGACTTA+AGG 0.371883 tig0014622:+23105 None:intergenic
GTGTGAAGTGAGTGCATTAT+TGG 0.372583 tig0014622:+28724 None:intergenic
TTTGAGTGATCGGAAGCTTT+GGG 0.373070 tig0014622:+28553 None:intergenic
CTAGCTTTGATTCTCACCTT+TGG 0.378169 tig0014622:-28323 Msa1355270:CDS
CATAGTTTGTTGTTAGATGC+AGG 0.385042 tig0014622:-23460 Msa1355270:three_prime_UTR
TCCAAACATAAACATATTTA+GGG 0.386351 tig0014622:-26899 Msa1355270:CDS
ATCAAACAATGATATCTATC+AGG 0.387643 tig0014622:+23317 None:intergenic
TAGAAGTGAAGGTGAGGAAA+AGG 0.388577 tig0014622:+28652 None:intergenic
GTGGAAATGAAATAGGCAAT+TGG 0.388742 tig0014622:-26979 Msa1355270:intron
CTGCCTATGATTTGGACAAT+TGG 0.391285 tig0014622:-26720 Msa1355270:CDS
ATATACATATACCATTAAAC+TGG 0.393547 tig0014622:+23188 None:intergenic
TCCTATGTTAGAGGACTTCA+AGG 0.398233 tig0014622:-26808 Msa1355270:CDS
AAATCTATTTCTATACTTCA+AGG 0.399852 tig0014622:-24747 Msa1355270:three_prime_UTR
CTCATCCTCATGTCTGTCAT+TGG 0.406217 tig0014622:+23838 None:intergenic
GATCCCGCAACCGGCTATCC+AGG 0.411353 tig0014622:-23811 Msa1355270:three_prime_UTR
TCACTTCACACTTCTCACTA+TGG 0.413169 tig0014622:-28712 Msa1355270:exon
CTTCCAATTGTCCAAATCAT+AGG 0.416710 tig0014622:+26717 None:intergenic
CAAAGGAGCACCAAAATAAC+TGG 0.417499 tig0014622:+24492 None:intergenic
TGTTGTTCTTGTTATGGGAT+TGG 0.419650 tig0014622:-24613 Msa1355270:three_prime_UTR
ATTTGTTAAGAGATTGAAAT+CGG 0.423848 tig0014622:+26358 None:intergenic
TACAATGGAGGACAAGCAAT+GGG 0.424197 tig0014622:-26937 Msa1355270:CDS
CGTCCTGGATAGCCGGTTGC+GGG 0.426160 tig0014622:+23808 None:intergenic
GAAGCTTTGGGTTGCAAAAT+GGG 0.427105 tig0014622:+28565 None:intergenic
GGTCTCGTAAACAGCAATAT+AGG 0.429355 tig0014622:+23529 None:intergenic
ATGAGCTCAAGTTGCTTGCC+TGG 0.436975 tig0014622:+24543 None:intergenic
TGGTGGAGTGAAGCACTTCA+TGG 0.437164 tig0014622:-28429 Msa1355270:CDS
AGTGAAGCACTTCATGGAAT+TGG 0.438899 tig0014622:-28423 Msa1355270:CDS
AGTTTCCTAGAAGAGTTAAA+GGG 0.439616 tig0014622:+24787 None:intergenic
GCACGGTCTATTCGAACTAT+AGG 0.440133 tig0014622:+25041 None:intergenic
CTTAGTCGAGCGAACGAGGC+TGG 0.444276 tig0014622:-23394 Msa1355270:three_prime_UTR
GCGCTTGCACAGATTATCTT+CGG 0.444836 tig0014622:-24378 Msa1355270:three_prime_UTR
CCTTTCAAGGTGGTAAATTG+AGG 0.447530 tig0014622:-26780 Msa1355270:CDS
TGCAACAAGCAGAAGCTTGA+AGG 0.451720 tig0014622:+26752 None:intergenic
CGGAAGTCCTATGAAACAAT+TGG 0.454607 tig0014622:-23491 Msa1355270:three_prime_UTR
AATGGGTAGGATCTGGTTGA+TGG 0.455801 tig0014622:+28582 None:intergenic
GTTGCTGATGTTCTTCATGC+TGG 0.461257 tig0014622:-26116 Msa1355270:intron
CGTGTTCATCTTGACTTGCC+AGG 0.468378 tig0014622:-24561 Msa1355270:three_prime_UTR
CTGAAAATTCAGAAACCATA+AGG 0.470959 tig0014622:-23651 Msa1355270:three_prime_UTR
ATCTTCGGTGACCACAATCC+AGG 0.473820 tig0014622:-24363 Msa1355270:intron
AGTATTTCCTTAGCAGTCAT+AGG 0.475975 tig0014622:-24828 Msa1355270:three_prime_UTR
CTTCATGGAATTGGTAATGT+TGG 0.476358 tig0014622:-28414 Msa1355270:CDS
ATTCCTAGACTTGGTATCCC+TGG 0.476443 tig0014622:-28459 Msa1355270:CDS
TGTTGTTAGATGCAGGGGAA+AGG 0.476995 tig0014622:-23453 Msa1355270:three_prime_UTR
GAGGAAGACTGCCAATTACT+TGG 0.477124 tig0014622:-23885 Msa1355270:three_prime_UTR
TCGTCCTGGATAGCCGGTTG+CGG 0.478908 tig0014622:+23807 None:intergenic
AATCCAGCAAAGCTTCCATT+TGG 0.479595 tig0014622:-24969 Msa1355270:three_prime_UTR
TGCTCAATGCAACTACGAAA+TGG 0.482034 tig0014622:+26440 None:intergenic
ATAAGGCTAGGCCTATTTGA+TGG 0.482689 tig0014622:-24993 Msa1355270:three_prime_UTR
CTTTCAAGGTGGTAAATTGA+GGG 0.483323 tig0014622:-26779 Msa1355270:CDS
AAATACTGTTAGAAAACAAT+GGG 0.484703 tig0014622:-26339 Msa1355270:CDS
GCATAGTTAGAAGTCATCAT+AGG 0.485327 tig0014622:+26835 None:intergenic
CGCAATGCCTCCGAGTTCAC+CGG 0.485334 tig0014622:+24398 None:intergenic
GTGCTTATAACCGTGTAAAT+GGG 0.486214 tig0014622:-26394 Msa1355270:CDS
CAAGACTTAAGGTGAAAGTA+AGG 0.486886 tig0014622:+23116 None:intergenic
ACATATTTAGGGATCCAAGA+TGG 0.488212 tig0014622:-26888 Msa1355270:CDS
AGGGTTTCACCACTATGTTA+AGG 0.490232 tig0014622:-24727 Msa1355270:three_prime_UTR
GCTCTTGAAGCTGCAAGAAA+CGG 0.490942 tig0014622:-24900 Msa1355270:three_prime_UTR
CTGCTGTAGTAATAACTTGA+GGG 0.493520 tig0014622:+28346 None:intergenic
CATATTTAGGGATCCAAGAT+GGG 0.494587 tig0014622:-26887 Msa1355270:CDS
ATTGGAGGTATTATCTGGGC+TGG 0.495300 tig0014622:-24426 Msa1355270:three_prime_UTR
AATCTATTTCTATACTTCAA+GGG 0.497613 tig0014622:-24746 Msa1355270:three_prime_UTR
ATGAGAGCTGATCCCGCAAC+CGG 0.499710 tig0014622:-23820 Msa1355270:three_prime_UTR
CCTTGTTTCAAGACTCACAT+TGG 0.500842 tig0014622:-28520 Msa1355270:CDS
CCTCAATTTACCACCTTGAA+AGG 0.503529 tig0014622:+26780 None:intergenic
TCACTCCACCACTGATAACC+AGG 0.504074 tig0014622:+28441 None:intergenic
TGTCAGATTGTGGAGCTGTT+GGG 0.508258 tig0014622:-26184 Msa1355270:three_prime_UTR
TGTGAAGTGAGTGCATTATT+GGG 0.508279 tig0014622:+28725 None:intergenic
TTTCATCCTGGTTGTGATGG+TGG 0.509672 tig0014622:-24696 Msa1355270:three_prime_UTR
GGACGTGGGATCTTCTTCAA+TGG 0.511045 tig0014622:-28393 Msa1355270:CDS
ATTATCTGGGCTGGTTATCC+CGG 0.511568 tig0014622:-24417 Msa1355270:three_prime_UTR
TTTGAATAGTCACAAGCAAA+TGG 0.511606 tig0014622:+28606 None:intergenic
GCTGGTTATCCCGGTGAACT+CGG 0.513527 tig0014622:-24408 Msa1355270:three_prime_UTR
GTGTCAGATTGTGGAGCTGT+TGG 0.514165 tig0014622:-26185 Msa1355270:three_prime_UTR
GTTGCAAAATGGGTAGGATC+TGG 0.514278 tig0014622:+28575 None:intergenic
TTGGAACCAATCATGCCAAA+TGG 0.515211 tig0014622:+24954 None:intergenic
GCTCCTCCCATTCCTAGACT+TGG 0.519108 tig0014622:-28468 Msa1355270:CDS
CCTTTGGTACCGAATCGGTC+AGG 0.519532 tig0014622:-28307 Msa1355270:intron
TCTCACCTTTGGTACCGAAT+CGG 0.521384 tig0014622:-28312 Msa1355270:CDS
AAAACCATGGGAACATTGTA+GGG 0.523881 tig0014622:-23558 Msa1355270:three_prime_UTR
AGGTATATTGTGTCAGATTG+TGG 0.526072 tig0014622:-26194 Msa1355270:three_prime_UTR
GCCTCCCTACAATGTTCCCA+TGG 0.527917 tig0014622:+23554 None:intergenic
ATTTGAGCCGAAGCACACTT+TGG 0.527987 tig0014622:+24672 None:intergenic
TAAAATCTGTAAGTTCGTCC+TGG 0.528263 tig0014622:+23793 None:intergenic
GTATCCCTGGTTATCAGTGG+TGG 0.534454 tig0014622:-28446 Msa1355270:CDS
GTAAGTTCGTCCTGGATAGC+CGG 0.534593 tig0014622:+23801 None:intergenic
AACAATATACCTGACCGATT+CGG 0.535347 tig0014622:+28298 None:intergenic
AAGAGTTAAAGGGGAAGCAT+TGG 0.535694 tig0014622:+24797 None:intergenic
AGGGATACCAAGTCTAGGAA+TGG 0.537426 tig0014622:+28461 None:intergenic
TCTTTGGTTCTTTGAGTGAT+CGG 0.539157 tig0014622:+28543 None:intergenic
AGATTGAAATCGGCACAACT+TGG 0.540868 tig0014622:+26368 None:intergenic
AACTTGGAACCCCATTTACA+CGG 0.544433 tig0014622:+26384 None:intergenic
CGCGAGCATCGAAGTGAAAG+CGG 0.546150 tig0014622:+26686 None:intergenic
AGTATAGAAATAGATTTACA+AGG 0.547314 tig0014622:+24753 None:intergenic
AAGTGAGTGCATTATTGGGC+TGG 0.548449 tig0014622:+28729 None:intergenic
GGGATACCAAGTCTAGGAAT+GGG 0.549981 tig0014622:+28462 None:intergenic
ATAGTTTGTTGTTAGATGCA+GGG 0.550004 tig0014622:-23459 Msa1355270:three_prime_UTR
TGGTGGACCAAAGTGTGCTT+CGG 0.550209 tig0014622:-24679 Msa1355270:three_prime_UTR
CAAATACTGTTAGAAAACAA+TGG 0.551853 tig0014622:-26340 Msa1355270:CDS
CTGAAATAGAAGTGAAGGTG+AGG 0.552807 tig0014622:+28646 None:intergenic
GATGATGGTGACAAAGGTAA+AGG 0.558419 tig0014622:+28677 None:intergenic
AGGGTCTCATTTGTTGCATG+TGG 0.558547 tig0014622:-23353 Msa1355270:three_prime_UTR
ACTCTTCTAGGAAACTATGC+TGG 0.560876 tig0014622:-24780 Msa1355270:three_prime_UTR
AGACCACTAAAACATCGAAC+CGG 0.563354 tig0014622:-23511 Msa1355270:three_prime_UTR
ATTGGATCAAAGTGTAGAGA+GGG 0.564885 tig0014622:-24595 Msa1355270:three_prime_UTR
TAGTTTGTTGTTAGATGCAG+GGG 0.565163 tig0014622:-23458 Msa1355270:three_prime_UTR
AAGGAAGATGATGGTGACAA+AGG 0.565981 tig0014622:+28671 None:intergenic
TAAAATTGGAGGTATTATCT+GGG 0.566330 tig0014622:-24430 Msa1355270:three_prime_UTR
CTTTGGGTTGCAAAATGGGT+AGG 0.566909 tig0014622:+28569 None:intergenic
GGTTTGAAGATCATAGAAGA+AGG 0.567462 tig0014622:-23373 Msa1355270:three_prime_UTR
ATGGGTAGGATCTGGTTGAT+GGG 0.568615 tig0014622:+28583 None:intergenic
GCAGGGGAAAGGAGACATGT+TGG 0.569438 tig0014622:-23442 Msa1355270:three_prime_UTR
ACCTTGAAGTCCTCTAACAT+AGG 0.569504 tig0014622:+26807 None:intergenic
AATTGAAAATAGATTGTGAA+GGG 0.571295 tig0014622:+25019 None:intergenic
CTATGATTTGGACAATTGGA+AGG 0.571540 tig0014622:-26716 Msa1355270:CDS
GCTGCTGTAGTAATAACTTG+AGG 0.574575 tig0014622:+28345 None:intergenic
CCAATGTGAGTCTTGAAACA+AGG 0.575001 tig0014622:+28520 None:intergenic
TTTCGTAGTTGCATTGAGCA+AGG 0.577135 tig0014622:-26437 Msa1355270:CDS
ATACAATGGAGGACAAGCAA+TGG 0.578829 tig0014622:-26938 Msa1355270:CDS
AAAGGTAAAGGTTGATGAGA+GGG 0.579378 tig0014622:+28689 None:intergenic
GAAAACAATGGGAATTCCAC+GGG 0.579779 tig0014622:-26328 Msa1355270:CDS
ACATCTTAGTCGAGCGAACG+AGG 0.581381 tig0014622:-23398 Msa1355270:three_prime_UTR
AAGGACTGAAATAGAAGTGA+AGG 0.583217 tig0014622:+28641 None:intergenic
TAGAAATAGATTTACAAGGA+GGG 0.590318 tig0014622:+24757 None:intergenic
GCAATGCCTCCGAGTTCACC+GGG 0.590372 tig0014622:+24399 None:intergenic
ATTAGGACCTATGACTGCTA+AGG 0.590903 tig0014622:+24821 None:intergenic
GTTTCCTAGAAGAGTTAAAG+GGG 0.591308 tig0014622:+24788 None:intergenic
AAACAGCGTCCTTAACATAG+TGG 0.592457 tig0014622:+24718 None:intergenic
AAGAAACTTCACCTGGATTG+TGG 0.594801 tig0014622:+24352 None:intergenic
AGAAAACAATGGGAATTCCA+CGG 0.595910 tig0014622:-26329 Msa1355270:CDS
ACGGTGTATGAATTTGGCCA+TGG 0.600902 tig0014622:-23760 Msa1355270:three_prime_UTR
GGGAGAGGACAAGAAACAGC+TGG 0.605215 tig0014622:-26865 Msa1355270:CDS
ATGAAGTTTGTCGTGTGTAA+CGG 0.610203 tig0014622:+23702 None:intergenic
TTGGTATCCCTGGTTATCAG+TGG 0.611691 tig0014622:-28449 Msa1355270:CDS
CAAATGGTGGTAGCTGAGCA+AGG 0.613513 tig0014622:+28622 None:intergenic
GGAATTGGTAATGTTGGACG+TGG 0.614428 tig0014622:-28408 Msa1355270:CDS
TAACCAGGGATACCAAGTCT+AGG 0.616722 tig0014622:+28456 None:intergenic
TTTCAAGGTGGTAAATTGAG+GGG 0.618147 tig0014622:-26778 Msa1355270:CDS
AGTCCTATGAAACAATTGGT+AGG 0.618848 tig0014622:-23487 Msa1355270:three_prime_UTR
GATTGGATCAAAGTGTAGAG+AGG 0.621514 tig0014622:-24596 Msa1355270:three_prime_UTR
ATATTTAGGGATCCAAGATG+GGG 0.624537 tig0014622:-26886 Msa1355270:CDS
AAAATAGATTGTGAAGGGCA+CGG 0.626411 tig0014622:+25024 None:intergenic
TTGAGGGAAGCTAGTTGCAG+AGG 0.628505 tig0014622:+28362 None:intergenic
ATGTCGGTCTCAGTCACAGT+TGG 0.630385 tig0014622:-23586 Msa1355270:three_prime_UTR
TTTGGTCCACCATCACAACC+AGG 0.632794 tig0014622:+24690 None:intergenic
CCTGACCGATTCGGTACCAA+AGG 0.633028 tig0014622:+28307 None:intergenic
GGATCATACATGATGAGCAA+GGG 0.637641 tig0014622:-26163 Msa1355270:three_prime_UTR
GTTTGAAGATCATAGAAGAA+GGG 0.639357 tig0014622:-23372 Msa1355270:three_prime_UTR
ATTGAGCAAGGACGAGCTAG+TGG 0.641480 tig0014622:-26425 Msa1355270:CDS
GGGATCATACATGATGAGCA+AGG 0.642469 tig0014622:-26164 Msa1355270:three_prime_UTR
GGAAATGAAATAGGCAATTG+GGG 0.645119 tig0014622:-26977 Msa1355270:intron
GGTGAGGAAAAGGAAGATGA+TGG 0.646963 tig0014622:+28662 None:intergenic
TGCTTATAACCGTGTAAATG+GGG 0.648687 tig0014622:-26393 Msa1355270:CDS
GGGTCTCATTTGTTGCATGT+GGG 0.649952 tig0014622:-23352 Msa1355270:three_prime_UTR
CAAGGTGATTCCTTTCAAGG+TGG 0.650018 tig0014622:-26790 Msa1355270:CDS
GCAGGGATGGATCTAGAATG+TGG 0.651822 tig0014622:-25113 Msa1355270:intron
AATCAGTAATTATTCACCCG+TGG 0.653281 tig0014622:+26312 None:intergenic
ATAGAAATAGATTTACAAGG+AGG 0.657022 tig0014622:+24756 None:intergenic
GAATAGTCACAAGCAAATGG+TGG 0.657076 tig0014622:+28609 None:intergenic
TAATTGAAAATAGATTGTGA+AGG 0.658304 tig0014622:+25018 None:intergenic
CAAAGGTAAAGGTTGATGAG+AGG 0.662391 tig0014622:+28688 None:intergenic
ATACCAAGTCTAGGAATGGG+AGG 0.662802 tig0014622:+28465 None:intergenic
TATCTATAGGACCTCCACAA+AGG 0.668985 tig0014622:+24475 None:intergenic
TGGCCAAATTCATACACCGT+AGG 0.671014 tig0014622:+23763 None:intergenic
GCGAGAGCAATATACAATGG+AGG 0.674380 tig0014622:-26949 Msa1355270:CDS
AGGGTATGCAAAATCAGCAG+AGG 0.675215 tig0014622:-26144 Msa1355270:three_prime_UTR
GAAGCGAGAGCAATATACAA+TGG 0.675980 tig0014622:-26952 Msa1355270:CDS
AAGTTCCAATGACAGACATG+AGG 0.676512 tig0014622:-23843 Msa1355270:three_prime_UTR
CACTCCACCACTGATAACCA+GGG 0.677155 tig0014622:+28442 None:intergenic
GCTCGACTAAGATGTTCACA+AGG 0.677345 tig0014622:+23406 None:intergenic
ACCATGGGAACATTGTAGGG+AGG 0.683771 tig0014622:-23555 Msa1355270:three_prime_UTR
TGTAACGGAAACAAACTCGT+AGG 0.683975 tig0014622:+23717 None:intergenic
AGAAACCTGCAAAAGCATGT+CGG 0.689737 tig0014622:-23602 Msa1355270:three_prime_UTR
TATGATTTGGACAATTGGAA+GGG 0.691461 tig0014622:-26715 Msa1355270:CDS
GGTTATCCCGGTGAACTCGG+AGG 0.700448 tig0014622:-24405 Msa1355270:three_prime_UTR
TATTTAGGGATCCAAGATGG+GGG 0.707233 tig0014622:-26885 Msa1355270:CDS
TGCTTCGGCTCAAATAGACG+AGG 0.719505 tig0014622:-24664 Msa1355270:three_prime_UTR
ACAATGGAGGACAAGCAATG+GGG 0.736483 tig0014622:-26936 Msa1355270:CDS
TCAATGCAACTACGAAATGG+TGG 0.737851 tig0014622:+26443 None:intergenic
GAATTGGTAATGTTGGACGT+GGG 0.776859 tig0014622:-28407 Msa1355270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACCTTTTAACTTATTTTTA+CGG - tig0014622:23685-23704 Msa1355270:three_prime_UTR 15.0%
!! ATAATAACAATGTAAAAAGA+GGG + tig0014622:25748-25767 None:intergenic 15.0%
!! ATAACTATACAATTAAATCT+TGG - tig0014622:25804-25823 Msa1355270:intron 15.0%
!!! TGATATAGTATAATTCTTTT+TGG - tig0014622:26050-26069 Msa1355270:intron 15.0%
!!! ATAATTTTCCTTTACTTTTA+TGG - tig0014622:26124-26143 Msa1355270:three_prime_UTR 15.0%
!!! ACTATTTTAATAACTTAACA+TGG + tig0014622:26410-26429 None:intergenic 15.0%
!!! ATCTATTTTCAATTAGAATA+AGG - tig0014622:26807-26826 Msa1355270:CDS 15.0%
!! CTTAAGATATAATGAATTTA+CGG + tig0014622:27839-27858 None:intergenic 15.0%
!! TTTATGAAACATGATTTATT+TGG - tig0014622:28570-28589 Msa1355270:CDS 15.0%
!! TTATTTATTTAGATGATCTA+TGG - tig0014622:28657-28676 Msa1355270:CDS 15.0%
!!! TATAAGAATGACCAATTTTA+TGG + tig0014622:23849-23868 None:intergenic 20.0%
!! ACTGGAATATGAAAAAAATT+TGG - tig0014622:23887-23906 Msa1355270:three_prime_UTR 20.0%
!! ATCATAGAGGAAAAAATATA+GGG + tig0014622:24019-24038 None:intergenic 20.0%
!! AATCATAGAGGAAAAAATAT+AGG + tig0014622:24020-24039 None:intergenic 20.0%
!!! ATATTTTTTCCTCTATGATT+TGG - tig0014622:24020-24039 Msa1355270:intron 20.0%
!!! ATATAGCTTAACTATGTTTT+TGG + tig0014622:24371-24390 None:intergenic 20.0%
!! ATTTAGCTGTTTATCTAAAT+AGG - tig0014622:24420-24439 Msa1355270:three_prime_UTR 20.0%
!! TTTAGCTGTTTATCTAAATA+GGG - tig0014622:24421-24440 Msa1355270:three_prime_UTR 20.0%
!!! ATAAAAATTTTGCAATGCAA+AGG + tig0014622:24598-24617 None:intergenic 20.0%
!!! GAAGTTACTTTTCATTTTTT+TGG - tig0014622:24789-24808 Msa1355270:three_prime_UTR 20.0%
!!! TTACTTTTCATTTTTTTGGT+TGG - tig0014622:24793-24812 Msa1355270:three_prime_UTR 20.0%
!!! TAATTGTTTTTGAATGAATG+TGG - tig0014622:24819-24838 Msa1355270:three_prime_UTR 20.0%
!! TCCAAACATAAACATATTTA+GGG - tig0014622:24918-24937 Msa1355270:three_prime_UTR 20.0%
!!! ATTTGTTAAGAGATTGAAAT+CGG + tig0014622:25462-25481 None:intergenic 20.0%
!! AAATACTGTTAGAAAACAAT+GGG - tig0014622:25478-25497 Msa1355270:intron 20.0%
!!! TAATTAAGTGTAACATTTTG+TGG - tig0014622:25589-25608 Msa1355270:intron 20.0%
!! GATAATAACAATGTAAAAAG+AGG + tig0014622:25749-25768 None:intergenic 20.0%
!! AAAAACAGAATTGAATGAAA+TGG + tig0014622:26025-26044 None:intergenic 20.0%
!! ATAGAAAACCATAAAAGTAA+AGG + tig0014622:26135-26154 None:intergenic 20.0%
!! TCATCAAAATATAAACTCTT+TGG - tig0014622:26192-26211 Msa1355270:three_prime_UTR 20.0%
!! AGAATAATAAATACAGTTGA+GGG + tig0014622:26308-26327 None:intergenic 20.0%
!! AAGAATAATAAATACAGTTG+AGG + tig0014622:26309-26328 None:intergenic 20.0%
!!! TCTATCTAGCTATAATATTT+TGG - tig0014622:26447-26466 Msa1355270:CDS 20.0%
!!! ATTATGATTTTCTTGACTAT+AGG - tig0014622:26620-26639 Msa1355270:intron 20.0%
!! AATTGAAAATAGATTGTGAA+GGG + tig0014622:26801-26820 None:intergenic 20.0%
!! TAATTGAAAATAGATTGTGA+AGG + tig0014622:26802-26821 None:intergenic 20.0%
!!! AGCTAGATATAAATGATTTT+CGG + tig0014622:26900-26919 None:intergenic 20.0%
!! AGTATAGAAATAGATTTACA+AGG + tig0014622:27067-27086 None:intergenic 20.0%
!!! AAATCTATTTCTATACTTCA+AGG - tig0014622:27070-27089 Msa1355270:intron 20.0%
!!! AATCTATTTCTATACTTCAA+GGG - tig0014622:27071-27090 Msa1355270:intron 20.0%
!! TGAACTATTAAACAAACATA+AGG - tig0014622:27504-27523 Msa1355270:intron 20.0%
!! AGATTAGATAACATTCAATT+TGG - tig0014622:27527-27546 Msa1355270:intron 20.0%
!!! GAACTTTAATGTAATCTTTT+GGG + tig0014622:27960-27979 None:intergenic 20.0%
!! ATATACATATACCATTAAAC+TGG + tig0014622:28632-28651 None:intergenic 20.0%
!!! GGTTATGAATTTTTTTAAGG+CGG + tig0014622:23590-23609 None:intergenic 25.0%
!!! AGCGGTTATGAATTTTTTTA+AGG + tig0014622:23593-23612 None:intergenic 25.0%
! GACCGTAAAAATAAGTTAAA+AGG + tig0014622:23690-23709 None:intergenic 25.0%
! AGAGTTATTGATACAATGAT+AGG - tig0014622:23761-23780 Msa1355270:three_prime_UTR 25.0%
!! CACAAATTTGTTCTCATTAT+TGG + tig0014622:23797-23816 None:intergenic 25.0%
!! CATATTCCAGTAAACTATTT+TGG + tig0014622:23878-23897 None:intergenic 25.0%
!! AATAGCAAAATATGCGTTTT+AGG + tig0014622:23969-23988 None:intergenic 25.0%
! TCATAGAGGAAAAAATATAG+GGG + tig0014622:24018-24037 None:intergenic 25.0%
! CATAAAATTTGTGCCAAATT+GGG + tig0014622:24057-24076 None:intergenic 25.0%
! ATGCTCAATATAAAGATGAA+TGG + tig0014622:24087-24106 None:intergenic 25.0%
! ATTCATCTTTATATTGAGCA+TGG - tig0014622:24086-24105 Msa1355270:intron 25.0%
!! TAATCAGGGTTTCAAATTTT+TGG + tig0014622:24147-24166 None:intergenic 25.0%
!! AAAAATTTGAAACCCTGATT+AGG - tig0014622:24146-24165 Msa1355270:intron 25.0%
!! AAAATTTGAAACCCTGATTA+GGG - tig0014622:24147-24166 Msa1355270:intron 25.0%
! ATTTGGAAAAAATTGAGAGA+AGG - tig0014622:24293-24312 Msa1355270:intron 25.0%
!! ACCATTTTGCAGAAAATATA+AGG - tig0014622:24754-24773 Msa1355270:three_prime_UTR 25.0%
! GAAAAGTAACTTCACTATTT+AGG + tig0014622:24782-24801 None:intergenic 25.0%
! AATGAATGTGGAAATGAAAT+AGG - tig0014622:24831-24850 Msa1355270:three_prime_UTR 25.0%
! CTCCAAACATAAACATATTT+AGG - tig0014622:24917-24936 Msa1355270:three_prime_UTR 25.0%
! TCCCTAAATATGTTTATGTT+TGG + tig0014622:24922-24941 None:intergenic 25.0%
!!! AACAAAAAAGCATTGTAACT+AGG + tig0014622:25173-25192 None:intergenic 25.0%
! CAAATACTGTTAGAAAACAA+TGG - tig0014622:25477-25496 Msa1355270:intron 25.0%
!! ATTTTGTGGTGAATAAAATC+AGG - tig0014622:25603-25622 Msa1355270:intron 25.0%
! TTCATGCTGGTATATATTTA+GGG - tig0014622:25714-25733 Msa1355270:intron 25.0%
!!! TAGATATATGGCTTTGAATA+AGG - tig0014622:25949-25968 Msa1355270:intron 25.0%
! GTGAAATGCAAATTTGAAAA+AGG + tig0014622:26081-26100 None:intergenic 25.0%
! TAGAAAGTAACATAGACAAA+TGG + tig0014622:26237-26256 None:intergenic 25.0%
!! TTTTCAATTAGAATAAGGCT+AGG - tig0014622:26812-26831 Msa1355270:CDS 25.0%
! TAGAAATAGATTTACAAGGA+GGG + tig0014622:27063-27082 None:intergenic 25.0%
! ATAGAAATAGATTTACAAGG+AGG + tig0014622:27064-27083 None:intergenic 25.0%
! AGATTATGTTGTTCTTGTTA+TGG - tig0014622:27198-27217 Msa1355270:intron 25.0%
!! GATTATGTTGTTCTTGTTAT+GGG - tig0014622:27199-27218 Msa1355270:intron 25.0%
! TTAGCTGAACTAATATCTAT+AGG + tig0014622:27358-27377 None:intergenic 25.0%
! GCTAAAAATGACGATAAAAT+TGG - tig0014622:27373-27392 Msa1355270:intron 25.0%
! AAAAATGACGATAAAATTGG+AGG - tig0014622:27376-27395 Msa1355270:intron 25.0%
!!! ATAAAATTGGAGGTATTATC+TGG - tig0014622:27386-27405 Msa1355270:intron 25.0%
!!! TAAAATTGGAGGTATTATCT+GGG - tig0014622:27387-27406 Msa1355270:intron 25.0%
! TATTAATAGTTGTCTACAGA+AGG - tig0014622:27580-27599 Msa1355270:intron 25.0%
! CTTTAAACTCGCATATAATT+TGG + tig0014622:27670-27689 None:intergenic 25.0%
!! ACATGTTGTAGAGATATTTT+AGG - tig0014622:27748-27767 Msa1355270:intron 25.0%
!!! TTTTAGGAGTAATATAACAG+TGG - tig0014622:27764-27783 Msa1355270:intron 25.0%
!! GGAACTTTAATGTAATCTTT+TGG + tig0014622:27961-27980 None:intergenic 25.0%
!! TGAAACTAATTTGTACCTTA+TGG + tig0014622:28184-28203 None:intergenic 25.0%
!! TACAAATTAGTTTCAGAGTT+AGG - tig0014622:28189-28208 Msa1355270:intron 25.0%
! ATCAAACAATGATATCTATC+AGG + tig0014622:28503-28522 None:intergenic 25.0%
!! ATCACATTACAGTACATTTT+TGG + tig0014622:28608-28627 None:intergenic 25.0%
TTTGAATAGTCACAAGCAAA+TGG + tig0014622:23214-23233 None:intergenic 30.0%
TTGTTCACTCGTAGAATTTA+AGG - tig0014622:23537-23556 Msa1355270:three_prime_UTR 30.0%
! GCATGTCAAAAATTCTAAAG+CGG + tig0014622:23611-23630 None:intergenic 30.0%
GTATCAATAACTCTTACAGT+TGG + tig0014622:23755-23774 None:intergenic 30.0%
AATGAGAACAAATTTGTGCA+TGG - tig0014622:23799-23818 Msa1355270:three_prime_UTR 30.0%
! AAGAATGACCAATTTTATGG+TGG + tig0014622:23846-23865 None:intergenic 30.0%
AGCTATCCAAAATAGTTTAC+TGG - tig0014622:23869-23888 Msa1355270:three_prime_UTR 30.0%
CATAGAGGAAAAAATATAGG+GGG + tig0014622:24017-24036 None:intergenic 30.0%
GCATAAAATTTGTGCCAAAT+TGG + tig0014622:24058-24077 None:intergenic 30.0%
TGTCATCTCAACGTAAAATT+TGG - tig0014622:24276-24295 Msa1355270:intron 30.0%
TTGTAGAGAATCAAAGTTCA+GGG - tig0014622:24486-24505 Msa1355270:three_prime_UTR 30.0%
! CATTTTCTCTCTCAATCTAA+TGG + tig0014622:24640-24659 None:intergenic 30.0%
! GCCTTATATTTTCTGCAAAA+TGG + tig0014622:24758-24777 None:intergenic 30.0%
TGGAAATGAAATAGGCAATT+GGG - tig0014622:24839-24858 Msa1355270:three_prime_UTR 30.0%
! TATGATTTGGACAATTGGAA+GGG - tig0014622:25102-25121 Msa1355270:three_prime_UTR 30.0%
! CTGCAAAAAGTACATATGTT+TGG + tig0014622:25250-25269 None:intergenic 30.0%
TTCAGTAAAAGTTTCTCACT+CGG + tig0014622:25297-25316 None:intergenic 30.0%
TATCTTGTTGAAGCAATGAA+TGG - tig0014622:25556-25575 Msa1355270:intron 30.0%
CTTCATGCTGGTATATATTT+AGG - tig0014622:25713-25732 Msa1355270:intron 30.0%
TAACAATGTAAAAAGAGGGT+TGG + tig0014622:25744-25763 None:intergenic 30.0%
AATGAACTCACAAAGTGTAA+AGG - tig0014622:25837-25856 Msa1355270:intron 30.0%
!!! CTTTTGTCGGTTTAGATATA+TGG - tig0014622:25937-25956 Msa1355270:intron 30.0%
!!! TATGGCTTTGAATAAGGTTT+TGG - tig0014622:25955-25974 Msa1355270:intron 30.0%
CAGTCATAGATGAATATGTT+AGG + tig0014622:26264-26283 None:intergenic 30.0%
GTAAATAGCTTTCTATACGA+GGG + tig0014622:26352-26371 None:intergenic 30.0%
TGTAAATAGCTTTCTATACG+AGG + tig0014622:26353-26372 None:intergenic 30.0%
ATTTATGTAGACAAGTCCAA+AGG - tig0014622:26372-26391 Msa1355270:CDS 30.0%
TTTATGTAGACAAGTCCAAA+GGG - tig0014622:26373-26392 Msa1355270:CDS 30.0%
ATGGTGTAATTATTTCCCTT+TGG + tig0014622:26391-26410 None:intergenic 30.0%
!! AATGTGCTTTGAAAATTTGC+AGG - tig0014622:26686-26705 Msa1355270:intron 30.0%
!! ATGTGCTTTGAAAATTTGCA+GGG - tig0014622:26687-26706 Msa1355270:CDS 30.0%
!!! GAAATACTAGTTTTTGGAAG+TGG + tig0014622:26977-26996 None:intergenic 30.0%
!!! GCTAAGGAAATACTAGTTTT+TGG + tig0014622:26983-27002 None:intergenic 30.0%
AGTTTCCTAGAAGAGTTAAA+GGG + tig0014622:27033-27052 None:intergenic 30.0%
TAGTTTCCTAGAAGAGTTAA+AGG + tig0014622:27034-27053 None:intergenic 30.0%
ATTATACAAGAAACTTCACC+TGG + tig0014622:27475-27494 None:intergenic 30.0%
TGTATGTTGCAGGAAAAAAT+TGG + tig0014622:27731-27750 None:intergenic 30.0%
! AGTTTTCTACCGTTAATACA+TGG - tig0014622:27812-27831 Msa1355270:intron 30.0%
ATTTACGGACCATGTATTAA+CGG + tig0014622:27824-27843 None:intergenic 30.0%
CATTCATGACTAAAATTGAG+TGG + tig0014622:27904-27923 None:intergenic 30.0%
! ACGAACTTACAGATTTTACA+AGG - tig0014622:28029-28048 Msa1355270:intron 30.0%
! CGAACTTACAGATTTTACAA+GGG - tig0014622:28030-28049 Msa1355270:intron 30.0%
CTGAAAATTCAGAAACCATA+AGG - tig0014622:28166-28185 Msa1355270:intron 30.0%
AAACCTACCAATTGTTTCAT+AGG + tig0014622:28336-28355 None:intergenic 30.0%
!! ATAGTTTGTTGTTAGATGCA+GGG - tig0014622:28358-28377 Msa1355270:CDS 30.0%
GTTTGAAGATCATAGAAGAA+GGG - tig0014622:28445-28464 Msa1355270:CDS 30.0%
GTAATGTGATTCCAGTTTAA+TGG - tig0014622:28618-28637 Msa1355270:CDS 30.0%
GAATCGAATAACAAGACTTA+AGG + tig0014622:28715-28734 None:intergenic 30.0%
TGTGAAGTGAGTGCATTATT+GGG + tig0014622:23095-23114 None:intergenic 35.0%
!! AAAGGTAAAGGTTGATGAGA+GGG + tig0014622:23131-23150 None:intergenic 35.0%
AAGGACTGAAATAGAAGTGA+AGG + tig0014622:23179-23198 None:intergenic 35.0%
!! TCTTTGGTTCTTTGAGTGAT+CGG + tig0014622:23277-23296 None:intergenic 35.0%
!! CTTCATGGAATTGGTAATGT+TGG - tig0014622:23403-23422 Msa1355270:three_prime_UTR 35.0%
CTGCTGTAGTAATAACTTGA+GGG + tig0014622:23474-23493 None:intergenic 35.0%
AACAATATACCTGACCGATT+CGG + tig0014622:23522-23541 None:intergenic 35.0%
TTTGTGAGAGAGAGTGAAAA+CGG - tig0014622:23650-23669 Msa1355270:three_prime_UTR 35.0%
TCACATGTCCACCATAAAAT+TGG - tig0014622:23835-23854 Msa1355270:three_prime_UTR 35.0%
AAATTTGTGCCAAATTGGGA+GGG + tig0014622:24053-24072 None:intergenic 35.0%
AAAATTTGTGCCAAATTGGG+AGG + tig0014622:24054-24073 None:intergenic 35.0%
GTGAATGAAATCCCTAATCA+GGG + tig0014622:24161-24180 None:intergenic 35.0%
AGTGAATGAAATCCCTAATC+AGG + tig0014622:24162-24181 None:intergenic 35.0%
GTTGTAGAGAATCAAAGTTC+AGG - tig0014622:24485-24504 Msa1355270:three_prime_UTR 35.0%
TGTAGAGAATCAAAGTTCAG+GGG - tig0014622:24487-24506 Msa1355270:three_prime_UTR 35.0%
! ATCCAAATCCTATTTTCCGA+TGG + tig0014622:24575-24594 None:intergenic 35.0%
CAGAGTCGTTAATCTACTAA+CGG + tig0014622:24668-24687 None:intergenic 35.0%
! AATCTAACAGTTTTGCAGCA+TGG - tig0014622:24707-24726 Msa1355270:three_prime_UTR 35.0%
GTGGAAATGAAATAGGCAAT+TGG - tig0014622:24838-24857 Msa1355270:three_prime_UTR 35.0%
GGAAATGAAATAGGCAATTG+GGG - tig0014622:24840-24859 Msa1355270:three_prime_UTR 35.0%
ACATATTTAGGGATCCAAGA+TGG - tig0014622:24929-24948 Msa1355270:three_prime_UTR 35.0%
CATATTTAGGGATCCAAGAT+GGG - tig0014622:24930-24949 Msa1355270:three_prime_UTR 35.0%
ATATTTAGGGATCCAAGATG+GGG - tig0014622:24931-24950 Msa1355270:three_prime_UTR 35.0%
GCATAGTTAGAAGTCATCAT+AGG + tig0014622:24985-25004 None:intergenic 35.0%
!! TATGCTGTTTCCTATGTTAG+AGG - tig0014622:25000-25019 Msa1355270:three_prime_UTR 35.0%
CTTTCAAGGTGGTAAATTGA+GGG - tig0014622:25038-25057 Msa1355270:three_prime_UTR 35.0%
TTTCAAGGTGGTAAATTGAG+GGG - tig0014622:25039-25058 Msa1355270:three_prime_UTR 35.0%
ACATTTCACTGCCTATGATT+TGG - tig0014622:25089-25108 Msa1355270:three_prime_UTR 35.0%
CTTCCAATTGTCCAAATCAT+AGG + tig0014622:25103-25122 None:intergenic 35.0%
! CTATGATTTGGACAATTGGA+AGG - tig0014622:25101-25120 Msa1355270:three_prime_UTR 35.0%
! CTTATATTTAAGACCGAACG+TGG + tig0014622:25206-25225 None:intergenic 35.0%
ACCTGAAGAATCATATGTCA+CGG + tig0014622:25323-25342 None:intergenic 35.0%
TGTGCTTATAACCGTGTAAA+TGG - tig0014622:25422-25441 Msa1355270:intron 35.0%
GTGCTTATAACCGTGTAAAT+GGG - tig0014622:25423-25442 Msa1355270:intron 35.0%
TGCTTATAACCGTGTAAATG+GGG - tig0014622:25424-25443 Msa1355270:intron 35.0%
AGAAAACAATGGGAATTCCA+CGG - tig0014622:25488-25507 Msa1355270:intron 35.0%
AATCAGTAATTATTCACCCG+TGG + tig0014622:25508-25527 None:intergenic 35.0%
TTGTTGAAGCAATGAATGGT+TGG - tig0014622:25560-25579 Msa1355270:intron 35.0%
AGGTATATTGTGTCAGATTG+TGG - tig0014622:25623-25642 Msa1355270:intron 35.0%
!! CATTGTCACTTGTCTTTTGT+CGG - tig0014622:25924-25943 Msa1355270:intron 35.0%
!! TTGAGGGAAAGTCTTTTTCA+AGG + tig0014622:26292-26311 None:intergenic 35.0%
! GGTGTTATGACATAATACCA+TGG - tig0014622:26551-26570 Msa1355270:intron 35.0%
ATACCATGGTGAAATCTAAC+TGG - tig0014622:26565-26584 Msa1355270:intron 35.0%
AAAATAGATTGTGAAGGGCA+CGG + tig0014622:26796-26815 None:intergenic 35.0%
TTGCTGGATTTCCATCAAAT+AGG + tig0014622:26838-26857 None:intergenic 35.0%
! AATGATTTTCGGAACAGACA+TGG + tig0014622:26889-26908 None:intergenic 35.0%
GTGAAGCAGTGTTCTTTAAA+AGG + tig0014622:26949-26968 None:intergenic 35.0%
AGTATTTCCTTAGCAGTCAT+AGG - tig0014622:26989-27008 Msa1355270:intron 35.0%
GTTTCCTAGAAGAGTTAAAG+GGG + tig0014622:27032-27051 None:intergenic 35.0%
! TGTTGTTCTTGTTATGGGAT+TGG - tig0014622:27204-27223 Msa1355270:intron 35.0%
ATTGGATCAAAGTGTAGAGA+GGG - tig0014622:27222-27241 Msa1355270:intron 35.0%
! TTCTAAGCGACCAGTTATTT+TGG - tig0014622:27315-27334 Msa1355270:intron 35.0%
TGTTGCAGGAAAAAATTGGA+TGG + tig0014622:27727-27746 None:intergenic 35.0%
TTTAGTCATGAATGCAATGC+AGG - tig0014622:27910-27929 Msa1355270:intron 35.0%
!! TCTTTTGGGTACCAAGTAAT+TGG + tig0014622:27946-27965 None:intergenic 35.0%
TAAAATCTGTAAGTTCGTCC+TGG + tig0014622:28027-28046 None:intergenic 35.0%
ATGAAGTTTGTCGTGTGTAA+CGG + tig0014622:28118-28137 None:intergenic 35.0%
! ATTTTCAGCCATCAAATGAG+TGG + tig0014622:28154-28173 None:intergenic 35.0%
ACAGTTGGAGTAAAAAACCA+TGG - tig0014622:28246-28265 Msa1355270:intron 35.0%
CAGTTGGAGTAAAAAACCAT+GGG - tig0014622:28247-28266 Msa1355270:intron 35.0%
AAAAACCATGGGAACATTGT+AGG - tig0014622:28258-28277 Msa1355270:intron 35.0%
AAAACCATGGGAACATTGTA+GGG - tig0014622:28259-28278 Msa1355270:intron 35.0%
CAATTGTTTCATAGGACTTC+CGG + tig0014622:28328-28347 None:intergenic 35.0%
AGTCCTATGAAACAATTGGT+AGG - tig0014622:28330-28349 Msa1355270:CDS 35.0%
!! CATAGTTTGTTGTTAGATGC+AGG - tig0014622:28357-28376 Msa1355270:CDS 35.0%
!! TAGTTTGTTGTTAGATGCAG+GGG - tig0014622:28359-28378 Msa1355270:CDS 35.0%
GGTTTGAAGATCATAGAAGA+AGG - tig0014622:28444-28463 Msa1355270:CDS 35.0%
CAAGACTTAAGGTGAAAGTA+AGG + tig0014622:28704-28723 None:intergenic 35.0%
GTGTGAAGTGAGTGCATTAT+TGG + tig0014622:23096-23115 None:intergenic 40.0%
TCACTTCACACTTCTCACTA+TGG - tig0014622:23105-23124 Msa1355270:three_prime_UTR 40.0%
!! CAAAGGTAAAGGTTGATGAG+AGG + tig0014622:23132-23151 None:intergenic 40.0%
! GATGATGGTGACAAAGGTAA+AGG + tig0014622:23143-23162 None:intergenic 40.0%
! AAGGAAGATGATGGTGACAA+AGG + tig0014622:23149-23168 None:intergenic 40.0%
TAGAAGTGAAGGTGAGGAAA+AGG + tig0014622:23168-23187 None:intergenic 40.0%
CTGAAATAGAAGTGAAGGTG+AGG + tig0014622:23174-23193 None:intergenic 40.0%
GAATAGTCACAAGCAAATGG+TGG + tig0014622:23211-23230 None:intergenic 40.0%
!! GAAGCTTTGGGTTGCAAAAT+GGG + tig0014622:23255-23274 None:intergenic 40.0%
TTTGAGTGATCGGAAGCTTT+GGG + tig0014622:23267-23286 None:intergenic 40.0%
GAGTCTTGAAACAAGGTCTT+TGG + tig0014622:23293-23312 None:intergenic 40.0%
CCAATGTGAGTCTTGAAACA+AGG + tig0014622:23300-23319 None:intergenic 40.0%
! CCTTGTTTCAAGACTCACAT+TGG - tig0014622:23297-23316 Msa1355270:three_prime_UTR 40.0%
! AGTGAAGCACTTCATGGAAT+TGG - tig0014622:23394-23413 Msa1355270:three_prime_UTR 40.0%
!! GAATTGGTAATGTTGGACGT+GGG - tig0014622:23410-23429 Msa1355270:three_prime_UTR 40.0%
GCTGCTGTAGTAATAACTTG+AGG + tig0014622:23475-23494 None:intergenic 40.0%
!! CTAGCTTTGATTCTCACCTT+TGG - tig0014622:23494-23513 Msa1355270:three_prime_UTR 40.0%
! CTAACACGCACAAGTTTGTT+TGG - tig0014622:23709-23728 Msa1355270:three_prime_UTR 40.0%
!! TTATGGTGGACATGTGAGAT+AGG + tig0014622:23832-23851 None:intergenic 40.0%
AATATAGGGGGTCAAATCGT+GGG + tig0014622:24005-24024 None:intergenic 40.0%
AAATATAGGGGGTCAAATCG+TGG + tig0014622:24006-24025 None:intergenic 40.0%
AATTTGTGCCAAATTGGGAG+GGG + tig0014622:24052-24071 None:intergenic 40.0%
AAGGACTACCGAATAGCAAA+TGG - tig0014622:24312-24331 Msa1355270:intron 40.0%
AGGACTACCGAATAGCAAAT+GGG - tig0014622:24313-24332 Msa1355270:intron 40.0%
!! TTTGGCTCCCATTTGCTATT+CGG + tig0014622:24323-24342 None:intergenic 40.0%
! GTATTGCGGTTGTACGATTT+TGG + tig0014622:24341-24360 None:intergenic 40.0%
AATCGTACAACCGCAATACT+TGG - tig0014622:24342-24361 Msa1355270:intron 40.0%
ATCGTACAACCGCAATACTT+GGG - tig0014622:24343-24362 Msa1355270:intron 40.0%
!! GAGTGTTGCTTCATCCATAT+CGG - tig0014622:24452-24471 Msa1355270:three_prime_UTR 40.0%
CTTCATCCATATCGGTATCA+GGG - tig0014622:24460-24479 Msa1355270:three_prime_UTR 40.0%
TTCATCCATATCGGTATCAG+GGG - tig0014622:24461-24480 Msa1355270:three_prime_UTR 40.0%
CAAAGTTCAGGGGAGTTATT+AGG - tig0014622:24497-24516 Msa1355270:three_prime_UTR 40.0%
CACCATCGGAAAATAGGATT+TGG - tig0014622:24570-24589 Msa1355270:three_prime_UTR 40.0%
! GTTCTTCAGTAGCTGCTTTA+AGG + tig0014622:24736-24755 None:intergenic 40.0%
GAAGCGAGAGCAATATACAA+TGG - tig0014622:24865-24884 Msa1355270:three_prime_UTR 40.0%
ATACAATGGAGGACAAGCAA+TGG - tig0014622:24879-24898 Msa1355270:three_prime_UTR 40.0%
TACAATGGAGGACAAGCAAT+GGG - tig0014622:24880-24899 Msa1355270:three_prime_UTR 40.0%
! AAGCAATGGGGATGACATTT+TGG - tig0014622:24893-24912 Msa1355270:three_prime_UTR 40.0%
! AGCAATGGGGATGACATTTT+GGG - tig0014622:24894-24913 Msa1355270:three_prime_UTR 40.0%
TATTTAGGGATCCAAGATGG+GGG - tig0014622:24932-24951 Msa1355270:three_prime_UTR 40.0%
TCCTATGTTAGAGGACTTCA+AGG - tig0014622:25009-25028 Msa1355270:three_prime_UTR 40.0%
ACCTTGAAGTCCTCTAACAT+AGG + tig0014622:25013-25032 None:intergenic 40.0%
CTTCAAGGTGATTCCTTTCA+AGG - tig0014622:25024-25043 Msa1355270:three_prime_UTR 40.0%
CCTCAATTTACCACCTTGAA+AGG + tig0014622:25040-25059 None:intergenic 40.0%
CCTTTCAAGGTGGTAAATTG+AGG - tig0014622:25037-25056 Msa1355270:three_prime_UTR 40.0%
! CTGCCTATGATTTGGACAAT+TGG - tig0014622:25097-25116 Msa1355270:three_prime_UTR 40.0%
! GTTCCTCTTTTTACCACGTT+CGG - tig0014622:25190-25209 Msa1355270:intron 40.0%
TCAATGCAACTACGAAATGG+TGG + tig0014622:25377-25396 None:intergenic 40.0%
TGCTCAATGCAACTACGAAA+TGG + tig0014622:25380-25399 None:intergenic 40.0%
TTTCGTAGTTGCATTGAGCA+AGG - tig0014622:25380-25399 Msa1355270:intron 40.0%
AACTTGGAACCCCATTTACA+CGG + tig0014622:25436-25455 None:intergenic 40.0%
AGATTGAAATCGGCACAACT+TGG + tig0014622:25452-25471 None:intergenic 40.0%
GAAAACAATGGGAATTCCAC+GGG - tig0014622:25489-25508 Msa1355270:intron 40.0%
GGATCATACATGATGAGCAA+GGG - tig0014622:25654-25673 Msa1355270:intron 40.0%
! TGACAAGTGACTTGCAGATT+AGG + tig0014622:25870-25889 None:intergenic 40.0%
CATCCAGTTAGATTTCACCA+TGG + tig0014622:26571-26590 None:intergenic 40.0%
GTGAAATCTAACTGGATGTC+AGG - tig0014622:26573-26592 Msa1355270:intron 40.0%
!! GCTTTGAAAATTTGCAGGGA+TGG - tig0014622:26691-26710 Msa1355270:CDS 40.0%
ATAAGGCTAGGCCTATTTGA+TGG - tig0014622:26824-26843 Msa1355270:CDS 40.0%
AATCCAGCAAAGCTTCCATT+TGG - tig0014622:26848-26867 Msa1355270:CDS 40.0%
AAGCTTCCATTTGGCATGAT+TGG - tig0014622:26857-26876 Msa1355270:CDS 40.0%
TTGGAACCAATCATGCCAAA+TGG + tig0014622:26866-26885 None:intergenic 40.0%
! ATTTTCGGAACAGACATGGT+TGG + tig0014622:26885-26904 None:intergenic 40.0%
ATTAGGACCTATGACTGCTA+AGG + tig0014622:26999-27018 None:intergenic 40.0%
! AAGAGTTAAAGGGGAAGCAT+TGG + tig0014622:27023-27042 None:intergenic 40.0%
! ACTCTTCTAGGAAACTATGC+TGG - tig0014622:27037-27056 Msa1355270:intron 40.0%
AGGGTTTCACCACTATGTTA+AGG - tig0014622:27090-27109 Msa1355270:intron 40.0%
AAACAGCGTCCTTAACATAG+TGG + tig0014622:27102-27121 None:intergenic 40.0%
! GTTTTTCATCCTGGTTGTGA+TGG - tig0014622:27118-27137 Msa1355270:intron 40.0%
GATTGGATCAAAGTGTAGAG+AGG - tig0014622:27221-27240 Msa1355270:intron 40.0%
! AACTGGTCGCTTAGAAGTTT+TGG + tig0014622:27311-27330 None:intergenic 40.0%
!! CAAAGGAGCACCAAAATAAC+TGG + tig0014622:27328-27347 None:intergenic 40.0%
!!! GTTATTTTGGTGCTCCTTTG+TGG - tig0014622:27328-27347 Msa1355270:intron 40.0%
TATCTATAGGACCTCCACAA+AGG + tig0014622:27345-27364 None:intergenic 40.0%
AAGAAACTTCACCTGGATTG+TGG + tig0014622:27468-27487 None:intergenic 40.0%
CTCTACAACATGTATGTTGC+AGG + tig0014622:27741-27760 None:intergenic 40.0%
AAGTTCCAATGACAGACATG+AGG - tig0014622:27974-27993 Msa1355270:intron 40.0%
! CAGATTTTACAAGGGTCCTA+CGG - tig0014622:28038-28057 Msa1355270:intron 40.0%
! TGTAACGGAAACAAACTCGT+AGG + tig0014622:28103-28122 None:intergenic 40.0%
TCATTCGTCCACTCATTTGA+TGG - tig0014622:28143-28162 Msa1355270:intron 40.0%
! AGAAACCTGCAAAAGCATGT+CGG - tig0014622:28215-28234 Msa1355270:intron 40.0%
GGTCTCGTAAACAGCAATAT+AGG + tig0014622:28291-28310 None:intergenic 40.0%
AGACCACTAAAACATCGAAC+CGG - tig0014622:28306-28325 Msa1355270:intron 40.0%
CGGAAGTCCTATGAAACAAT+TGG - tig0014622:28326-28345 Msa1355270:CDS 40.0%
AAGTGAGTGCATTATTGGGC+TGG + tig0014622:23091-23110 None:intergenic 45.0%
GGTGAGGAAAAGGAAGATGA+TGG + tig0014622:23158-23177 None:intergenic 45.0%
ATGGGTAGGATCTGGTTGAT+GGG + tig0014622:23237-23256 None:intergenic 45.0%
AATGGGTAGGATCTGGTTGA+TGG + tig0014622:23238-23257 None:intergenic 45.0%
GTTGCAAAATGGGTAGGATC+TGG + tig0014622:23245-23264 None:intergenic 45.0%
!! CTTTGGGTTGCAAAATGGGT+AGG + tig0014622:23251-23270 None:intergenic 45.0%
!! GGAAGCTTTGGGTTGCAAAA+TGG + tig0014622:23256-23275 None:intergenic 45.0%
CTTTGAGTGATCGGAAGCTT+TGG + tig0014622:23268-23287 None:intergenic 45.0%
ATACCAAGTCTAGGAATGGG+AGG + tig0014622:23355-23374 None:intergenic 45.0%
GGGATACCAAGTCTAGGAAT+GGG + tig0014622:23358-23377 None:intergenic 45.0%
AGGGATACCAAGTCTAGGAA+TGG + tig0014622:23359-23378 None:intergenic 45.0%
! ATTCCTAGACTTGGTATCCC+TGG - tig0014622:23358-23377 Msa1355270:three_prime_UTR 45.0%
TAACCAGGGATACCAAGTCT+AGG + tig0014622:23364-23383 None:intergenic 45.0%
TTGGTATCCCTGGTTATCAG+TGG - tig0014622:23368-23387 Msa1355270:three_prime_UTR 45.0%
!! GGAATTGGTAATGTTGGACG+TGG - tig0014622:23409-23428 Msa1355270:three_prime_UTR 45.0%
! TCTCACCTTTGGTACCGAAT+CGG - tig0014622:23505-23524 Msa1355270:three_prime_UTR 45.0%
AGAGAGAGTGAAAACGGCTT+AGG - tig0014622:23656-23675 Msa1355270:three_prime_UTR 45.0%
ATATAGGGGGTCAAATCGTG+GGG + tig0014622:24004-24023 None:intergenic 45.0%
! GGGGTACTACCAAATCATAG+AGG + tig0014622:24032-24051 None:intergenic 45.0%
ATTTGTGCCAAATTGGGAGG+GGG + tig0014622:24051-24070 None:intergenic 45.0%
!! GACTATGAGTGTTGAGTGTC+AGG - tig0014622:24242-24261 Msa1355270:intron 45.0%
TCGTACAACCGCAATACTTG+GGG - tig0014622:24344-24363 Msa1355270:intron 45.0%
!! TTTTTGGCCCCCAAGTATTG+CGG + tig0014622:24355-24374 None:intergenic 45.0%
GCTTCATCCATATCGGTATC+AGG - tig0014622:24459-24478 Msa1355270:three_prime_UTR 45.0%
CACTGTCACCATCGGAAAAT+AGG - tig0014622:24564-24583 Msa1355270:three_prime_UTR 45.0%
GCGAGAGCAATATACAATGG+AGG - tig0014622:24868-24887 Msa1355270:three_prime_UTR 45.0%
ACAATGGAGGACAAGCAATG+GGG - tig0014622:24881-24900 Msa1355270:three_prime_UTR 45.0%
CAAGGTGATTCCTTTCAAGG+TGG - tig0014622:25027-25046 Msa1355270:three_prime_UTR 45.0%
TGCAACAAGCAGAAGCTTGA+AGG + tig0014622:25068-25087 None:intergenic 45.0%
AGACCGAACGTGGTAAAAAG+AGG + tig0014622:25196-25215 None:intergenic 45.0%
GCCGTGACATATGATTCTTC+AGG - tig0014622:25319-25338 Msa1355270:intron 45.0%
TGTCAGATTGTGGAGCTGTT+GGG - tig0014622:25633-25652 Msa1355270:intron 45.0%
GGGATCATACATGATGAGCA+AGG - tig0014622:25653-25672 Msa1355270:intron 45.0%
AGGGTATGCAAAATCAGCAG+AGG - tig0014622:25673-25692 Msa1355270:intron 45.0%
GTTGCTGATGTTCTTCATGC+TGG - tig0014622:25701-25720 Msa1355270:intron 45.0%
! ATGGCTACAGGAGTACAAGT+GGG + tig0014622:25981-26000 None:intergenic 45.0%
!!! GTTGCACTGCTGATTTTGCA+TGG + tig0014622:26745-26764 None:intergenic 45.0%
GCACGGTCTATTCGAACTAT+AGG + tig0014622:26779-26798 None:intergenic 45.0%
ATGCCAAATGGAAGCTTTGC+TGG + tig0014622:26854-26873 None:intergenic 45.0%
GCTCTTGAAGCTGCAAGAAA+CGG - tig0014622:26917-26936 Msa1355270:CDS 45.0%
!! AAAGGGGAAGCATTGGCATT+AGG + tig0014622:27016-27035 None:intergenic 45.0%
GCTTCCCCTTTAACTCTTCT+AGG - tig0014622:27025-27044 Msa1355270:intron 45.0%
!!! AAGGACGCTGTTTTTCATCC+TGG - tig0014622:27109-27128 Msa1355270:intron 45.0%
TTTCATCCTGGTTGTGATGG+TGG - tig0014622:27121-27140 Msa1355270:intron 45.0%
ATTTGAGCCGAAGCACACTT+TGG + tig0014622:27148-27167 None:intergenic 45.0%
!!! ATTTTGGTGCTCCTTTGTGG+AGG - tig0014622:27331-27350 Msa1355270:intron 45.0%
!! ATTGGAGGTATTATCTGGGC+TGG - tig0014622:27391-27410 Msa1355270:intron 45.0%
!! ATTATCTGGGCTGGTTATCC+CGG - tig0014622:27400-27419 Msa1355270:intron 45.0%
GCGCTTGCACAGATTATCTT+CGG - tig0014622:27439-27458 Msa1355270:intron 45.0%
AGTCATGAATGCAATGCAGG+AGG - tig0014622:27913-27932 Msa1355270:intron 45.0%
GAGGAAGACTGCCAATTACT+TGG - tig0014622:27932-27951 Msa1355270:intron 45.0%
CTCATCCTCATGTCTGTCAT+TGG + tig0014622:27982-28001 None:intergenic 45.0%
GGTCCTACGGTGTATGAATT+TGG - tig0014622:28051-28070 Msa1355270:intron 45.0%
!! CTTCCGGTTCGATGTTTTAG+TGG + tig0014622:28312-28331 None:intergenic 45.0%
TGTTGTTAGATGCAGGGGAA+AGG - tig0014622:28364-28383 Msa1355270:CDS 45.0%
GCTCGACTAAGATGTTCACA+AGG + tig0014622:28414-28433 None:intergenic 45.0%
! AGGGTCTCATTTGTTGCATG+TGG - tig0014622:28464-28483 Msa1355270:CDS 45.0%
! GGGTCTCATTTGTTGCATGT+GGG - tig0014622:28465-28484 Msa1355270:CDS 45.0%
!!! ATATACAAATATTTTAAAAA+TGG - tig0014622:26530-26549 Msa1355270:intron 5.0%
CAAATGGTGGTAGCTGAGCA+AGG + tig0014622:23198-23217 None:intergenic 50.0%
GTATCCCTGGTTATCAGTGG+TGG - tig0014622:23371-23390 Msa1355270:three_prime_UTR 50.0%
CACTCCACCACTGATAACCA+GGG + tig0014622:23378-23397 None:intergenic 50.0%
TCACTCCACCACTGATAACC+AGG + tig0014622:23379-23398 None:intergenic 50.0%
! TGGTGGAGTGAAGCACTTCA+TGG - tig0014622:23388-23407 Msa1355270:three_prime_UTR 50.0%
GGACGTGGGATCTTCTTCAA+TGG - tig0014622:23424-23443 Msa1355270:three_prime_UTR 50.0%
TTGAGGGAAGCTAGTTGCAG+AGG + tig0014622:23458-23477 None:intergenic 50.0%
TATAGGGGGTCAAATCGTGG+GGG + tig0014622:24003-24022 None:intergenic 50.0%
CGTACAACCGCAATACTTGG+GGG - tig0014622:24345-24364 Msa1355270:intron 50.0%
CAACTCCCCTGATACCGATA+TGG + tig0014622:24469-24488 None:intergenic 50.0%
ATTGAGCAAGGACGAGCTAG+TGG - tig0014622:25392-25411 Msa1355270:intron 50.0%
GTGTCAGATTGTGGAGCTGT+TGG - tig0014622:25632-25651 Msa1355270:intron 50.0%
! CATGGCTACAGGAGTACAAG+TGG + tig0014622:25982-26001 None:intergenic 50.0%
ACTGAGAGACACATGGCTAC+AGG + tig0014622:25993-26012 None:intergenic 50.0%
GACTGAGACTGAGAGACACA+TGG + tig0014622:26000-26019 None:intergenic 50.0%
! GCAGGGATGGATCTAGAATG+TGG - tig0014622:26704-26723 Msa1355270:CDS 50.0%
TTTGGTCCACCATCACAACC+AGG + tig0014622:27130-27149 None:intergenic 50.0%
! TGGTGGACCAAAGTGTGCTT+CGG - tig0014622:27138-27157 Msa1355270:intron 50.0%
TGCTTCGGCTCAAATAGACG+AGG - tig0014622:27153-27172 Msa1355270:intron 50.0%
!! CGTGTTCATCTTGACTTGCC+AGG - tig0014622:27256-27275 Msa1355270:intron 50.0%
! ATGAGCTCAAGTTGCTTGCC+TGG + tig0014622:27277-27296 None:intergenic 50.0%
ATCTTCGGTGACCACAATCC+AGG - tig0014622:27454-27473 Msa1355270:intron 50.0%
GTAAGTTCGTCCTGGATAGC+CGG + tig0014622:28019-28038 None:intergenic 50.0%
! TGAGACCGACATGCTTTTGC+AGG + tig0014622:28223-28242 None:intergenic 50.0%
ATGTCGGTCTCAGTCACAGT+TGG - tig0014622:28231-28250 Msa1355270:intron 50.0%
ACCATGGGAACATTGTAGGG+AGG - tig0014622:28262-28281 Msa1355270:intron 50.0%
ACATCTTAGTCGAGCGAACG+AGG - tig0014622:28419-28438 Msa1355270:CDS 50.0%
GCTCCTCCCATTCCTAGACT+TGG - tig0014622:23349-23368 Msa1355270:three_prime_UTR 55.0%
!! CCTGACCGATTCGGTACCAA+AGG + tig0014622:23513-23532 None:intergenic 55.0%
! CCTTTGGTACCGAATCGGTC+AGG - tig0014622:23510-23529 Msa1355270:three_prime_UTR 55.0%
GGTAGTACCCCCTCCCAATT+TGG - tig0014622:24041-24060 Msa1355270:intron 55.0%
TTCCGATGGTGACAGTGCTG+TGG + tig0014622:24561-24580 None:intergenic 55.0%
TCTTGTCCTCTCCCCCATCT+TGG + tig0014622:24946-24965 None:intergenic 55.0%
GGGAGAGGACAAGAAACAGC+TGG - tig0014622:24952-24971 Msa1355270:three_prime_UTR 55.0%
!! CGCGAGCATCGAAGTGAAAG+CGG + tig0014622:25134-25153 None:intergenic 55.0%
GCTGGTTATCCCGGTGAACT+CGG - tig0014622:27409-27428 Msa1355270:intron 55.0%
ATGAGAGCTGATCCCGCAAC+CGG - tig0014622:27997-28016 Msa1355270:intron 55.0%
GCCTCCCTACAATGTTCCCA+TGG + tig0014622:28266-28285 None:intergenic 55.0%
GCAGGGGAAAGGAGACATGT+TGG - tig0014622:28375-28394 Msa1355270:CDS 55.0%
CGATGGTGACAGTGCTGTGG+CGG + tig0014622:24558-24577 None:intergenic 60.0%
CGCCACAGCACTGTCACCAT+CGG - tig0014622:24556-24575 Msa1355270:three_prime_UTR 60.0%
AGGGATCCAAGATGGGGGAG+AGG - tig0014622:24937-24956 Msa1355270:three_prime_UTR 60.0%
GGTTATCCCGGTGAACTCGG+AGG - tig0014622:27412-27431 Msa1355270:intron 60.0%
GCAATGCCTCCGAGTTCACC+GGG + tig0014622:27421-27440 None:intergenic 60.0%
CGCAATGCCTCCGAGTTCAC+CGG + tig0014622:27422-27441 None:intergenic 60.0%
TCGTCCTGGATAGCCGGTTG+CGG + tig0014622:28013-28032 None:intergenic 60.0%
CTTAGTCGAGCGAACGAGGC+TGG - tig0014622:28423-28442 Msa1355270:CDS 60.0%
GATCCCGCAACCGGCTATCC+AGG - tig0014622:28006-28025 Msa1355270:intron 65.0%
CGTCCTGGATAGCCGGTTGC+GGG + tig0014622:28012-28031 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0014622 gene 23076 28763 23076 ID=Msa1355270;Name=Msa1355270
tig0014622 mRNA 23076 28763 23076 ID=Msa1355270-mRNA-1;Parent=Msa1355270;Name=Msa1355270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=48|1|1|1|0.8|0.83|6|1712|293
tig0014622 exon 23076 23907 23076 ID=Msa1355270-mRNA-1:exon:9404;Parent=Msa1355270-mRNA-1
tig0014622 exon 24364 25131 24364 ID=Msa1355270-mRNA-1:exon:9403;Parent=Msa1355270-mRNA-1
tig0014622 exon 26117 26214 26117 ID=Msa1355270-mRNA-1:exon:9402;Parent=Msa1355270-mRNA-1
tig0014622 exon 26311 26498 26311 ID=Msa1355270-mRNA-1:exon:9401;Parent=Msa1355270-mRNA-1
tig0014622 exon 26687 26986 26687 ID=Msa1355270-mRNA-1:exon:9400;Parent=Msa1355270-mRNA-1
tig0014622 exon 28308 28763 28308 ID=Msa1355270-mRNA-1:exon:9399;Parent=Msa1355270-mRNA-1
tig0014622 five_prime_UTR 28716 28763 28716 ID=Msa1355270-mRNA-1:five_prime_utr;Parent=Msa1355270-mRNA-1
tig0014622 CDS 28308 28715 28308 ID=Msa1355270-mRNA-1:cds;Parent=Msa1355270-mRNA-1
tig0014622 CDS 26687 26986 26687 ID=Msa1355270-mRNA-1:cds;Parent=Msa1355270-mRNA-1
tig0014622 CDS 26325 26498 26325 ID=Msa1355270-mRNA-1:cds;Parent=Msa1355270-mRNA-1
tig0014622 three_prime_UTR 26311 26324 26311 ID=Msa1355270-mRNA-1:three_prime_utr;Parent=Msa1355270-mRNA-1
tig0014622 three_prime_UTR 26117 26214 26117 ID=Msa1355270-mRNA-1:three_prime_utr;Parent=Msa1355270-mRNA-1
tig0014622 three_prime_UTR 24364 25131 24364 ID=Msa1355270-mRNA-1:three_prime_utr;Parent=Msa1355270-mRNA-1
tig0014622 three_prime_UTR 23076 23907 23076 ID=Msa1355270-mRNA-1:three_prime_utr;Parent=Msa1355270-mRNA-1
Gene Sequence

>Msa1355270

ATGGCCCTCTCATCAACCTTTACCTTTGTCACCATCATCTTCCTTTTCCTCACCTTCACTTCTATTTCAGTCCTTGCTCAGCTACCACCATTTGCTTGTGACTATTCAAACCCATCAACCAGATCCTACCCATTTTGCAACCCAAAGCTTCCGATCACTCAAAGAACCAAAGACCTTGTTTCAAGACTCACATTGGATGAGAAACTTGCTCAACTAGTTAACTCAGCTCCTCCCATTCCTAGACTTGGTATCCCTGGTTATCAGTGGTGGAGTGAAGCACTTCATGGAATTGGTAATGTTGGACGTGGGATCTTCTTCAATGGAAGTATCACCTCTGCAACTAGCTTCCCTCAAGTTATTACTACAGCAGCTAGCTTTGATTCTCACCTTTGGTACCGAATCGGTCAGGCAATTGGGGTTGAAGCGAGAGCAATATACAATGGAGGACAAGCAATGGGGATGACATTTTGGGCTCCAAACATAAACATATTTAGGGATCCAAGATGGGGGAGAGGACAAGAAACAGCTGGTGAAGATCCTATGATGACTTCTAACTATGCTGTTTCCTATGTTAGAGGACTTCAAGGTGATTCCTTTCAAGGTGGTAAATTGAGGGGACACCTTCAAGCTTCTGCTTGTTGCAAACATTTCACTGCCTATGATTTGGACAATTGGAAGGGTGTTAACCGCTTTCACTTCGATGCTCGCGTGAGTTTACAAGATTTAGCAGACACATATCAACCACCATTTCGTAGTTGCATTGAGCAAGGACGAGCTAGTGGAATAATGTGTGCTTATAACCGTGTAAATGGGGTTCCAAGTTGTGCCGATTTCAATCTCTTAACAAATACTGTTAGAAAACAATGGGAATTCCACGGGTGA
Protein sequence

>Msa1355270

MALSSTFTFVTIIFLFLTFTSISVLAQLPPFACDYSNPSTRSYPFCNPKLPITQRTKDLVSRLTLDEKLAQLVNSAPPIPRLGIPGYQWWSEALHGIGNVGRGIFFNGSITSATSFPQVITTAASFDSHLWYRIGQAIGVEARAIYNGGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPMMTSNYAVSYVRGLQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVNRFHFDARVSLQDLADTYQPPFRSCIEQGRASGIMCAYNRVNGVPSCADFNLLTNTVRKQWEFHG*