AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0602430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602430 MtrunA17_Chr4g0030031 90.484 620 28 2 1 589 1 620 0.0 1068
Msa0602430 MtrunA17_Chr7g0263701 44.000 625 293 8 1 586 1 607 8.60e-135 406
Msa0602430 MtrunA17_Chr1g0181611 42.516 628 274 10 1 586 1 583 8.36e-123 374
Msa0602430 MtrunA17_Chr2g0326021 52.796 447 158 9 157 589 128 535 5.18e-118 360
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0602430 AT5G60210.2 42.376 623 266 13 1 589 1 564 1.07e-130 394
Msa0602430 AT5G60210.4 42.376 623 266 13 1 589 1 564 1.07e-130 394
Msa0602430 AT5G60210.1 42.376 623 266 13 1 589 1 564 1.07e-130 394
Msa0602430 AT5G60210.6 42.376 623 266 13 1 589 1 564 1.07e-130 394
Msa0602430 AT5G60210.5 42.233 618 264 13 6 589 30 588 1.00e-127 387
Msa0602430 AT5G60210.3 42.233 618 264 13 6 589 30 588 1.00e-127 387
Msa0602430 AT2G37080.3 39.104 647 270 13 1 589 1 581 8.09e-108 336
Msa0602430 AT2G37080.1 38.829 649 271 13 1 589 1 583 1.56e-107 335
Msa0602430 AT2G37080.2 38.829 649 271 13 1 589 1 583 1.56e-107 335
Msa0602430 AT3G53350.7 30.725 345 112 11 246 589 178 396 2.07e-23 103
Msa0602430 AT3G53350.7 36.022 186 75 3 1 156 1 172 2.34e-22 100
Msa0602430 AT3G53350.1 30.725 345 112 11 246 589 178 396 2.07e-23 103
Msa0602430 AT3G53350.1 36.022 186 75 3 1 156 1 172 2.34e-22 100
Msa0602430 AT3G53350.5 30.725 345 112 11 246 589 178 396 2.07e-23 103
Msa0602430 AT3G53350.5 36.022 186 75 3 1 156 1 172 2.34e-22 100
Msa0602430 AT3G53350.3 30.725 345 112 11 246 589 176 394 2.08e-23 103
Msa0602430 AT3G53350.3 36.413 184 75 3 1 156 1 170 6.63e-23 101
Msa0602430 AT3G53350.2 30.725 345 112 11 246 589 176 394 2.08e-23 103
Msa0602430 AT3G53350.2 36.413 184 75 3 1 156 1 170 6.63e-23 101
Msa0602430 AT3G53350.8 30.725 345 112 11 246 589 187 405 5.53e-23 102
Msa0602430 AT3G53350.8 39.216 153 73 2 4 156 49 181 2.44e-21 97.1
Msa0602430 AT3G53350.4 30.725 345 112 11 246 589 189 407 5.81e-23 102
Msa0602430 AT3G53350.4 41.176 153 72 3 4 156 49 183 2.99e-21 97.1
Msa0602430 AT3G53350.6 30.725 345 112 11 246 589 189 407 5.81e-23 102
Msa0602430 AT3G53350.6 41.176 153 72 3 4 156 49 183 2.99e-21 97.1
Msa0602430 AT3G53350.9 30.725 345 112 11 246 589 206 424 7.07e-23 102
Msa0602430 AT3G53350.9 43.333 120 54 1 37 156 95 200 1.42e-18 89.0
Msa0602430 AT1G78430.1 37.640 178 99 5 413 586 151 320 1.31e-18 87.8
Msa0602430 AT1G17140.1 34.254 181 98 4 418 586 169 340 4.41e-14 74.3
Msa0602430 AT1G17140.2 34.254 181 98 4 418 586 169 340 4.41e-14 74.3

Find 121 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGTGCCTGAGTTTC+AGG 0.158972 4_2:-46049767 None:intergenic
ACTCAGTTTGTTTCATCTTT+TGG 0.182488 4_2:+46045447 Msa0602430:five_prime_UTR
TTTGAAGATTACCTTGTCTT+AGG 0.184407 4_2:-46047819 None:intergenic
CGGTAACTTCACTTCATTTC+AGG 0.197641 4_2:+46045408 Msa0602430:five_prime_UTR
GAGAAAACAGGTTAATGATT+TGG 0.251169 4_2:-46047757 None:intergenic
AAAGAACCGTCGAGATTCTA+AGG 0.289339 4_2:+46049825 Msa0602430:CDS
TCAACATCTTCAGCATAATT+AGG 0.312004 4_2:-46050829 None:intergenic
AGAAAACAGGTTAATGATTT+GGG 0.316143 4_2:-46047756 None:intergenic
TACTGAGAGATCTGTGTCTT+TGG 0.319421 4_2:+46050780 Msa0602430:CDS
TCTTAGTTCGCTTTCCATTT+CGG 0.319511 4_2:-46050674 None:intergenic
TTGTGTTGTTGGTTTGGTTT+TGG 0.324781 4_2:-46045358 None:intergenic
TGCTTTGTCTTCTGCATTGA+AGG 0.331152 4_2:+46049577 Msa0602430:CDS
ATAATTAGGTGAATACTTAT+AGG 0.350218 4_2:-46050815 None:intergenic
CGGTCACCCTCGCCACTTTA+CGG 0.350515 4_2:-46050621 None:intergenic
GGTAACATGCTGAAGAAGTT+TGG 0.353831 4_2:+46050877 Msa0602430:CDS
AACACTTTGTGTTGTTGGTT+TGG 0.359739 4_2:-46045364 None:intergenic
GCACGCGGAGAAACTTTCTT+AGG 0.360740 4_2:-46048676 None:intergenic
ATCTCTTCTTCAATATGATT+AGG 0.361618 4_2:-46050052 None:intergenic
CCCCAGCAAAATATCTGAAT+TGG 0.366490 4_2:+46049274 Msa0602430:CDS
TATTGTGATTTGTAAGCATT+AGG 0.367462 4_2:+46051150 Msa0602430:three_prime_UTR
CAGCAATGCGTACGAGTTGA+TGG 0.372307 4_2:+46050171 Msa0602430:CDS
CACTCAACTTTGCATTGCAT+TGG 0.372439 4_2:+46051118 Msa0602430:three_prime_UTR
TGAAGAAGTTTGGAGTCTTA+TGG 0.383316 4_2:+46050887 Msa0602430:CDS
TTGAAGATTACCTTGTCTTA+GGG 0.385906 4_2:-46047818 None:intergenic
GTTCTTTGCTATTCTTGAGT+TGG 0.389004 4_2:-46049745 None:intergenic
GGTAATGGACTTACTGGTTA+AGG 0.395263 4_2:-46045499 None:intergenic
CAACTCCATTGCTTTGGAGT+TGG 0.399162 4_2:+46049877 Msa0602430:CDS
GGCAGCTGCTGCTATGATTT+CGG 0.401359 4_2:+46050738 Msa0602430:CDS
TCAAAAGGAACTCAAAAGAT+TGG 0.417608 4_2:+46050387 Msa0602430:CDS
TGGCTGCAACTCCATTGCTT+TGG 0.418359 4_2:+46049871 Msa0602430:CDS
CGCGAGGCGGTTACGAAACT+CGG 0.423677 4_2:+46050568 Msa0602430:CDS
GCTGAAAGCACAACTTGAAT+TGG 0.425528 4_2:+46049610 Msa0602430:CDS
TGAAGTGAAACAAAGAGAAA+AGG 0.425942 4_2:-46045291 None:intergenic
AACTGATATTGAAGAGTTGA+AGG 0.430741 4_2:+46050258 Msa0602430:CDS
TGTTCTTTGAAGTCTGAGAT+TGG 0.431751 4_2:+46050076 Msa0602430:CDS
TATCTAGAGCTATGTGCTAC+TGG 0.432289 4_2:+46049452 Msa0602430:CDS
AGAGTTGAAGGCTAATCTAA+TGG 0.435601 4_2:+46050270 Msa0602430:CDS
CTTCAGCATCTCGTTCTCTT+CGG 0.435786 4_2:-46050473 None:intergenic
CCTCCAACTCACATTGTCTC+TGG 0.446526 4_2:-46050216 None:intergenic
AAATGAACATGGACTTCAAA+AGG 0.449057 4_2:+46050372 Msa0602430:CDS
GCAAGCTCAGCAAGACTTCG+AGG 0.450128 4_2:+46049373 Msa0602430:CDS
ACTCAACTTTGCATTGCATT+GGG 0.453040 4_2:+46051119 Msa0602430:three_prime_UTR
GTTGCAACACTTTGTGTTGT+TGG 0.453425 4_2:-46045369 None:intergenic
CATTAGGTGAAATTTGTAGT+AGG 0.456956 4_2:+46051166 Msa0602430:three_prime_UTR
CAACCTCGTTTCAACTAAAA+CGG 0.462932 4_2:+46045388 Msa0602430:five_prime_UTR
GTTGATGGAGCAGATAAAAT+CGG 0.470705 4_2:+46050186 Msa0602430:CDS
GAGCAGATAAAATCGGAATC+AGG 0.477930 4_2:+46050193 Msa0602430:CDS
AACCGAGTTGCAAGGTATCA+TGG 0.481196 4_2:+46050300 Msa0602430:CDS
AAGCGAACTAAGAAGGCTTA+AGG 0.481520 4_2:+46050684 Msa0602430:CDS
ATCCAAGTAAAAGAGAAAAC+AGG 0.483306 4_2:-46047769 None:intergenic
TAGGGCTAAGAGTTGCTCCT+TGG 0.485611 4_2:-46049399 None:intergenic
TCAAACTCAACAAGCTGAAT+CGG 0.486664 4_2:+46049652 Msa0602430:CDS
CAGAAGTGGTTCTTCTGAAG+TGG 0.492122 4_2:+46048651 Msa0602430:intron
ACAAGTGGCAAGCTCCGAAA+TGG 0.492854 4_2:+46050660 Msa0602430:CDS
GTCAACTGAGAGATGCTGTT+GGG 0.495983 4_2:-46049549 None:intergenic
GAAAATCAACAAGAGTTGCT+TGG 0.499437 4_2:+46050498 Msa0602430:CDS
CCAGAGACAATGTGAGTTGG+AGG 0.499761 4_2:+46050216 Msa0602430:CDS
TGATTTCGGCAGGGAACAAT+GGG 0.505513 4_2:+46050752 Msa0602430:CDS
TGAAATATTGAGAAATAGAG+AGG 0.505982 4_2:+46050027 Msa0602430:CDS
ACTTCAAGATGATTTGAAGA+AGG 0.507940 4_2:+46049313 Msa0602430:CDS
TCACTCTGTTCAAAATCTTG+TGG 0.509239 4_2:+46049979 Msa0602430:CDS
TGAATTGAAAGCTGATATGA+TGG 0.510421 4_2:+46050423 Msa0602430:CDS
GCTGCTGCTATGATTTCGGC+AGG 0.511645 4_2:+46050742 Msa0602430:CDS
ATGATTTCGGCAGGGAACAA+TGG 0.513538 4_2:+46050751 Msa0602430:CDS
TTTAACTTGAGCTTTGCGAC+CGG 0.516959 4_2:-46045210 None:intergenic
GGAGAAGTAAGAAAAGAGTA+CGG 0.521817 4_2:-46045270 None:intergenic
TAGCAAAGAACCTGAAACTC+AGG 0.524331 4_2:+46049757 Msa0602430:CDS
CTTTGAAGTCTGAGATTGGA+CGG 0.524621 4_2:+46050080 Msa0602430:CDS
GACGTTGCGAGAGACGTAGA+TGG 0.528471 4_2:+46049851 Msa0602430:CDS
ACGTGATAGCGCATGGAAGT+CGG 0.536408 4_2:+46049514 Msa0602430:CDS
AAATGGAAAGCGAACTAAGA+AGG 0.538764 4_2:+46050677 Msa0602430:CDS
TTCCATGATACCTTGCAACT+CGG 0.542413 4_2:-46050302 None:intergenic
AGACAGAAGCAACCGTAAAG+TGG 0.543135 4_2:+46050609 Msa0602430:CDS
ATCAGAATCACTTTCTCAGA+TGG 0.543609 4_2:+46049709 Msa0602430:CDS
GCAGTTAGAAGCAGCACAAG+TGG 0.544851 4_2:+46050645 Msa0602430:CDS
TTGTGCTGCTTCTAACTGCT+CGG 0.545994 4_2:-46050641 None:intergenic
TTAACTTGAGCTTTGCGACC+GGG 0.546683 4_2:-46045209 None:intergenic
TTGTTCTTGATATTTAGTCT+CGG 0.554617 4_2:-46050125 None:intergenic
GTGTCTCGTATCGTATGGTA+TGG 0.561981 4_2:-46045163 None:intergenic
TGAAGATTACCTTGTCTTAG+GGG 0.562136 4_2:-46047817 None:intergenic
GACTAGTAGTAGTCCTCAGT+TGG 0.570099 4_2:-46048705 None:intergenic
AGATGATTTGAAGAAGGTGA+AGG 0.573247 4_2:+46049319 Msa0602430:CDS
AGGCCAGAGACAATGTGAGT+TGG 0.574082 4_2:+46050213 Msa0602430:CDS
AGTTGGAACATTCTAGAGCA+AGG 0.576110 4_2:+46049894 Msa0602430:CDS
CAGAAGAACGTGATAGCGCA+TGG 0.577018 4_2:+46049507 Msa0602430:CDS
GCAAGACTTCGAGGAATCCA+AGG 0.582107 4_2:+46049382 Msa0602430:CDS
TACGAAACTCGGGATTGTGA+TGG 0.584576 4_2:+46050579 Msa0602430:CDS
GAAACTCGGGATTGTGATGG+AGG 0.585195 4_2:+46050582 Msa0602430:CDS
ATGTTCCAACTCCAAAGCAA+TGG 0.588382 4_2:-46049882 None:intergenic
TTAAGGTACAGTCTGATCAA+TGG 0.588594 4_2:+46050701 Msa0602430:CDS
AGCCGAGGCTGCAAAACGCG+AGG 0.589775 4_2:+46050552 Msa0602430:CDS
TTAACGTGTCTCGTATCGTA+TGG 0.590066 4_2:-46045168 None:intergenic
CTTGAATTGGTAGCTACTTG+TGG 0.590895 4_2:+46049623 Msa0602430:CDS
ATGATTCAGACGAAATAAGC+TGG 0.598473 4_2:-46049343 None:intergenic
AACTTCACTTCATTTCAGGA+AGG 0.598803 4_2:+46045412 Msa0602430:five_prime_UTR
GGATGACAGTAAAGTGAGAG+AGG 0.601699 4_2:+46050519 Msa0602430:CDS
CGCGTGCTGTACGCCAACTG+AGG 0.603861 4_2:+46048692 Msa0602430:CDS
GGATGATTGTAAATTCGAGA+AGG 0.605294 4_2:+46050000 Msa0602430:CDS
CTCAGTTGGCGTACAGCACG+CGG 0.606057 4_2:-46048691 None:intergenic
ATACAGTATGCTATGCTACC+CGG 0.610829 4_2:+46045191 Msa0602430:five_prime_UTR
GTTGGAACATTCTAGAGCAA+GGG 0.613738 4_2:+46049895 Msa0602430:CDS
ATGTCATCACAAAATGAACA+TGG 0.616779 4_2:+46050361 Msa0602430:CDS
GACAAGGAAACCGAGTTGCA+AGG 0.617966 4_2:+46050292 Msa0602430:CDS
GAAATTTGTAGTAGGTGTTG+TGG 0.619946 4_2:+46051174 Msa0602430:three_prime_UTR
CGAGGCTGCAAAACGCGAGG+CGG 0.620966 4_2:+46050555 Msa0602430:CDS
TCATATTTCAAAGCTTTGTG+AGG 0.621808 4_2:+46047733 Msa0602430:five_prime_UTR
AAGCAACCGTAAAGTGGCGA+GGG 0.625212 4_2:+46050615 Msa0602430:CDS
ACAGTCTGATCAATGGAGGA+AGG 0.630704 4_2:+46050708 Msa0602430:CDS
GCGAGGCGGTTACGAAACTC+GGG 0.631591 4_2:+46050569 Msa0602430:CDS
AGTCAACTGAGAGATGCTGT+TGG 0.631624 4_2:-46049550 None:intergenic
CAATGCATACCCCTAAGACA+AGG 0.632189 4_2:+46047808 Msa0602430:exon
CAATTTACAATGCAATGCAA+AGG 0.632590 4_2:-46051018 None:intergenic
TCAATGGAGGAAGGCTGCAG+AGG 0.637395 4_2:+46050717 Msa0602430:CDS
GAAGCAACCGTAAAGTGGCG+AGG 0.639605 4_2:+46050614 Msa0602430:CDS
GAAGGCTAATCTAATGGACA+AGG 0.644778 4_2:+46050276 Msa0602430:CDS
TGGGAAGTAAGTGAACGTGC+TGG 0.652948 4_2:-46045318 None:intergenic
AGGTACAGTCTGATCAATGG+AGG 0.656687 4_2:+46050704 Msa0602430:CDS
GTCATCCCTTAGAATCTCGA+CGG 0.658533 4_2:-46049831 None:intergenic
CTGCTGCTATGATTTCGGCA+GGG 0.663851 4_2:+46050743 Msa0602430:CDS
AGAGGAAATAGAGAAAGCCG+AGG 0.674506 4_2:+46050537 Msa0602430:CDS
AAGAACCGTCGAGATTCTAA+GGG 0.684529 4_2:+46049826 Msa0602430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATAAATAAATAAAAA+AGG - chr4_2:46046183-46046202 None:intergenic 0.0%
!!! AAATTAATTTTTTGTTACAA+TGG - chr4_2:46045715-46045734 None:intergenic 10.0%
!! TACATAAATATTAAAAAATG+TGG - chr4_2:46046108-46046127 None:intergenic 10.0%
!!! ATTTTTCAATTTAAAAATAC+GGG - chr4_2:46047098-46047117 None:intergenic 10.0%
!! ACTAAAATTTAAAAAAGTAA+GGG - chr4_2:46047126-46047145 None:intergenic 10.0%
!!! TACTAGTATTTTTTTTTTAT+TGG + chr4_2:46048398-46048417 Msa0602430:intron 10.0%
!!! ATTTTAACTATTATAATTGA+TGG + chr4_2:46049156-46049175 Msa0602430:intron 10.0%
!! AATAAATTCATATCAATTTC+AGG - chr4_2:46045856-46045875 None:intergenic 15.0%
!! AGTAAAAAAGAAGAAAAAAA+AGG - chr4_2:46046313-46046332 None:intergenic 15.0%
!! TGAAAATTACAATTAGTTAT+AGG + chr4_2:46046556-46046575 Msa0602430:intron 15.0%
!! CACTAAAATTTAAAAAAGTA+AGG - chr4_2:46047127-46047146 None:intergenic 15.0%
!!! ATTTTGGATTTTTTTTTCAT+AGG - chr4_2:46048112-46048131 None:intergenic 15.0%
!! AATACAAAAAAGTTATAATG+TGG - chr4_2:46048428-46048447 None:intergenic 15.0%
!! ATAATAACTGATAAAATAAG+CGG - chr4_2:46049019-46049038 None:intergenic 15.0%
!! ATTAATTAAGAAAGTGGTAA+TGG - chr4_2:46045517-46045536 None:intergenic 20.0%
!! AAAGCAATTAATTAAGAAAG+TGG - chr4_2:46045523-46045542 None:intergenic 20.0%
!!! ATTAATGTCAGTTTCTTTTT+TGG - chr4_2:46045897-46045916 None:intergenic 20.0%
!!! ATGATAATGTATTTGAATAG+AGG - chr4_2:46046063-46046082 None:intergenic 20.0%
!!! CAAATGTATATTTTAGATGT+GGG - chr4_2:46046149-46046168 None:intergenic 20.0%
!!! ACAAATGTATATTTTAGATG+TGG - chr4_2:46046150-46046169 None:intergenic 20.0%
!!! TAATTGTAATTTTCACCTTA+AGG - chr4_2:46046551-46046570 None:intergenic 20.0%
!! CATAACCAATTTATATCATA+TGG + chr4_2:46046690-46046709 Msa0602430:intron 20.0%
!!! TGGTTTTTTATCTTTAAAGA+TGG + chr4_2:46046868-46046887 Msa0602430:intron 20.0%
!!! GGTTTTTTATCTTTAAAGAT+GGG + chr4_2:46046869-46046888 Msa0602430:intron 20.0%
!!! GTTTTTTATCTTTAAAGATG+GGG + chr4_2:46046870-46046889 Msa0602430:intron 20.0%
!! AACTTTATAGTTTAGTCTAA+AGG - chr4_2:46047026-46047045 None:intergenic 20.0%
!!! GACAATATGGTTATATTTTT+AGG + chr4_2:46047383-46047402 Msa0602430:intron 20.0%
!! ATTATAGTAGTAATAATGAG+AGG + chr4_2:46047410-46047429 Msa0602430:intron 20.0%
!! TAAATTCTTATGTTTCTCAT+TGG + chr4_2:46047634-46047653 Msa0602430:intron 20.0%
!! TACGAAAACAACATTTATAT+AGG - chr4_2:46047870-46047889 None:intergenic 20.0%
!!! CATTGTGATAAAATGAATTT+TGG - chr4_2:46048128-46048147 None:intergenic 20.0%
!! ATTGATTAATAATGACAACA+AGG + chr4_2:46048541-46048560 Msa0602430:intron 20.0%
!! TACAAAATCTATGTTGTAAA+TGG - chr4_2:46048601-46048620 None:intergenic 20.0%
!!! TTTTATTGAAATTTCAGAAG+TGG + chr4_2:46048637-46048656 Msa0602430:intron 20.0%
!! TCAAACTAGTAAAATATCAA+AGG + chr4_2:46048759-46048778 Msa0602430:intron 20.0%
!!! AATAACTTTTCTCTTTTTGA+AGG + chr4_2:46049042-46049061 Msa0602430:intron 20.0%
!! AAAATCTTCTCAACTAAAAA+AGG - chr4_2:46049220-46049239 None:intergenic 20.0%
!!! ATTCTGATAAGTTTTGATTT+AGG - chr4_2:46049697-46049716 None:intergenic 20.0%
!! ATAATTAGGTGAATACTTAT+AGG - chr4_2:46050818-46050837 None:intergenic 20.0%
!! ATAATGATGTTTTTCATGTG+AGG - chr4_2:46045611-46045630 None:intergenic 25.0%
! TCTATAAAGAAATGTGAAGA+AGG - chr4_2:46045663-46045682 None:intergenic 25.0%
! TTTCCTATTTATCTGTATGA+AGG + chr4_2:46045688-46045707 Msa0602430:intron 25.0%
! GTAAAAAGATAAGCAGAAAA+AGG - chr4_2:46045820-46045839 None:intergenic 25.0%
! AAAAGAAACTGACATTAATG+CGG + chr4_2:46045898-46045917 Msa0602430:intron 25.0%
! GATAGTTGAGTATAAAAAAG+AGG - chr4_2:46046086-46046105 None:intergenic 25.0%
!!! TGACAAACCAATTTTTCAAT+GGG - chr4_2:46046484-46046503 None:intergenic 25.0%
!!! TTGACAAACCAATTTTTCAA+TGG - chr4_2:46046485-46046504 None:intergenic 25.0%
! GTTTATTTGTTTGTTCCTTA+AGG + chr4_2:46046533-46046552 Msa0602430:intron 25.0%
!!! TGAGCAAGTGTTTTAAAAAT+CGG - chr4_2:46046672-46046691 None:intergenic 25.0%
! CCATACCATATGATATAAAT+TGG - chr4_2:46046698-46046717 None:intergenic 25.0%
! CCAATTTATATCATATGGTA+TGG + chr4_2:46046695-46046714 Msa0602430:intron 25.0%
! ATTCATCATAGATGTTCAAT+GGG - chr4_2:46046839-46046858 None:intergenic 25.0%
! AATTCATCATAGATGTTCAA+TGG - chr4_2:46046840-46046859 None:intergenic 25.0%
! ACATCTATGATGAATTGAAA+TGG + chr4_2:46046844-46046863 Msa0602430:intron 25.0%
! CATCTATGATGAATTGAAAT+GGG + chr4_2:46046845-46046864 Msa0602430:intron 25.0%
! TAATACGAGTATAATTGTGA+GGG - chr4_2:46046906-46046925 None:intergenic 25.0%
! ATAATACGAGTATAATTGTG+AGG - chr4_2:46046907-46046926 None:intergenic 25.0%
! ATTATACTCGTATTATCAGT+TGG + chr4_2:46046911-46046930 Msa0602430:intron 25.0%
! TTAATGACTTCACAATATTC+GGG - chr4_2:46047358-46047377 None:intergenic 25.0%
! GTTAATGACTTCACAATATT+CGG - chr4_2:46047359-46047378 None:intergenic 25.0%
! GTCATTAACTATTGACAATA+TGG + chr4_2:46047370-46047389 Msa0602430:intron 25.0%
! AATCCTCTCAAAAAAAAATG+TGG + chr4_2:46047438-46047457 Msa0602430:intron 25.0%
! TCTCAAAAAAAAATGTGGTA+GGG + chr4_2:46047443-46047462 Msa0602430:intron 25.0%
! AGAAAACAGGTTAATGATTT+GGG - chr4_2:46047759-46047778 None:intergenic 25.0%
! AAGGTTGTGGATTTAAAAAA+AGG - chr4_2:46047951-46047970 None:intergenic 25.0%
!! TGTCATTGATTAGTTCTTTA+TGG - chr4_2:46048160-46048179 None:intergenic 25.0%
!! TCATTATTGTGTTTCCTTTT+TGG + chr4_2:46048270-46048289 Msa0602430:intron 25.0%
!! TGTTGACTGAATAAAACAAA+AGG - chr4_2:46048372-46048391 None:intergenic 25.0%
! ATCTAACATTTACAACAGAA+TGG + chr4_2:46048457-46048476 Msa0602430:intron 25.0%
! ACAACAAGGTATAAATTGAT+TGG + chr4_2:46048555-46048574 Msa0602430:intron 25.0%
! GAAATTGCTTATCAAGTTAA+TGG - chr4_2:46048852-46048871 None:intergenic 25.0%
! ATGTAAGTTGTTTATACAAG+CGG - chr4_2:46048971-46048990 None:intergenic 25.0%
! TGGATAATCAACTTAGTTTA+GGG - chr4_2:46049089-46049108 None:intergenic 25.0%
! TTGGATAATCAACTTAGTTT+AGG - chr4_2:46049090-46049109 None:intergenic 25.0%
! TGAAATATTGAGAAATAGAG+AGG + chr4_2:46050027-46050046 Msa0602430:CDS 25.0%
! ATCTCTTCTTCAATATGATT+AGG - chr4_2:46050055-46050074 None:intergenic 25.0%
! TTGTTCTTGATATTTAGTCT+CGG - chr4_2:46050128-46050147 None:intergenic 25.0%
!!! ACTGTTTGTTATGTTTTAGT+TGG + chr4_2:46051060-46051079 Msa0602430:three_prime_UTR 25.0%
!! TATTGTGATTTGTAAGCATT+AGG + chr4_2:46051150-46051169 Msa0602430:three_prime_UTR 25.0%
TGAAGTGAAACAAAGAGAAA+AGG - chr4_2:46045294-46045313 None:intergenic 30.0%
!! ACTCAGTTTGTTTCATCTTT+TGG + chr4_2:46045447-46045466 Msa0602430:five_prime_UTR 30.0%
AATTATGATATGCTGCATTG+TGG - chr4_2:46045579-46045598 None:intergenic 30.0%
TGCAGCATATCATAATTCAT+AGG + chr4_2:46045582-46045601 Msa0602430:intron 30.0%
!! GGTTTAAAAAAGCATCGTTT+AGG - chr4_2:46045799-46045818 None:intergenic 30.0%
ACAAAAGAATTGGTACGTTA+TGG - chr4_2:46046269-46046288 None:intergenic 30.0%
AAAAAGGAACAAGTACAAGA+AGG - chr4_2:46046297-46046316 None:intergenic 30.0%
!! AATTTTTCAATGGGAACAAG+AGG - chr4_2:46046475-46046494 None:intergenic 30.0%
TCTTGTTCCCATTGAAAAAT+TGG + chr4_2:46046474-46046493 Msa0602430:intron 30.0%
GTATGGAAGACATAATTAGA+AGG + chr4_2:46046712-46046731 Msa0602430:intron 30.0%
CTTTGAATATGAAGTAGGTA+TGG - chr4_2:46046757-46046776 None:intergenic 30.0%
! GATGACATTTTTATCTCATG+TGG + chr4_2:46046940-46046959 Msa0602430:intron 30.0%
! GAGTTTTCAAAAACAACTGT+CGG - chr4_2:46047159-46047178 None:intergenic 30.0%
AAAACTCAGTATTCACTCAA+GGG + chr4_2:46047172-46047191 Msa0602430:intron 30.0%
ATTGGTGAGATTGAATATCT+TGG - chr4_2:46047207-46047226 None:intergenic 30.0%
GGTGTCTAACTTAACAATAT+AGG - chr4_2:46047252-46047271 None:intergenic 30.0%
TAGTAGTAATAATGAGAGGT+AGG + chr4_2:46047414-46047433 Msa0602430:intron 30.0%
AGTAGTAATAATGAGAGGTA+GGG + chr4_2:46047415-46047434 Msa0602430:intron 30.0%
!!! CTACCACATTTTTTTTTGAG+AGG - chr4_2:46047444-46047463 None:intergenic 30.0%
CTCTCAAAAAAAAATGTGGT+AGG + chr4_2:46047442-46047461 Msa0602430:intron 30.0%
AGATTCAGCATTTATAGCTA+AGG + chr4_2:46047557-46047576 Msa0602430:intron 30.0%
TATAATTAATGTGTTCACGC+AGG - chr4_2:46047610-46047629 None:intergenic 30.0%
TGAATTGTTACTGTACTTGT+GGG + chr4_2:46047699-46047718 Msa0602430:intron 30.0%
! TCATATTTCAAAGCTTTGTG+AGG + chr4_2:46047733-46047752 Msa0602430:five_prime_UTR 30.0%
GAGAAAACAGGTTAATGATT+TGG - chr4_2:46047760-46047779 None:intergenic 30.0%
! AACCTGTTTTCTCTTTTACT+TGG + chr4_2:46047767-46047786 Msa0602430:five_prime_UTR 30.0%
ATCCAAGTAAAAGAGAAAAC+AGG - chr4_2:46047772-46047791 None:intergenic 30.0%
! CTCTTTTACTTGGATATTCA+AGG + chr4_2:46047777-46047796 Msa0602430:five_prime_UTR 30.0%
TTGAAGATTACCTTGTCTTA+GGG - chr4_2:46047821-46047840 None:intergenic 30.0%
TTTGAAGATTACCTTGTCTT+AGG - chr4_2:46047822-46047841 None:intergenic 30.0%
! CATTTTATCACAATGCATCA+AGG + chr4_2:46048133-46048152 Msa0602430:intron 30.0%
AGACATGATTATGCATTTAG+GGG - chr4_2:46048244-46048263 None:intergenic 30.0%
GAGACATGATTATGCATTTA+GGG - chr4_2:46048245-46048264 None:intergenic 30.0%
TGAGACATGATTATGCATTT+AGG - chr4_2:46048246-46048265 None:intergenic 30.0%
!!! GAGTTGTTACCTCTTTTTTA+AGG + chr4_2:46048344-46048363 Msa0602430:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG + chr4_2:46048920-46048939 Msa0602430:intron 30.0%
!! CTAAGTTGATTATCCAAACA+AGG + chr4_2:46049093-46049112 Msa0602430:intron 30.0%
TATGATTGATGTTGCATTAG+AGG + chr4_2:46049246-46049265 Msa0602430:intron 30.0%
! TCCAATTCAGATATTTTGCT+GGG - chr4_2:46049278-46049297 None:intergenic 30.0%
! TTCCAATTCAGATATTTTGC+TGG - chr4_2:46049279-46049298 None:intergenic 30.0%
ACTTCAAGATGATTTGAAGA+AGG + chr4_2:46049313-46049332 Msa0602430:CDS 30.0%
AACTGATATTGAAGAGTTGA+AGG + chr4_2:46050258-46050277 Msa0602430:CDS 30.0%
ATGTCATCACAAAATGAACA+TGG + chr4_2:46050361-46050380 Msa0602430:CDS 30.0%
AAATGAACATGGACTTCAAA+AGG + chr4_2:46050372-46050391 Msa0602430:CDS 30.0%
TCAAAAGGAACTCAAAAGAT+TGG + chr4_2:46050387-46050406 Msa0602430:CDS 30.0%
TGAATTGAAAGCTGATATGA+TGG + chr4_2:46050423-46050442 Msa0602430:CDS 30.0%
TCAACATCTTCAGCATAATT+AGG - chr4_2:46050832-46050851 None:intergenic 30.0%
GATTTCCAGAGAAAGAAAAA+TGG + chr4_2:46050856-46050875 Msa0602430:CDS 30.0%
!! TGTTACCATTTTTCTTTCTC+TGG - chr4_2:46050864-46050883 None:intergenic 30.0%
!!! TCAATCAGTCACTATTTTTG+AGG - chr4_2:46050919-46050938 None:intergenic 30.0%
CAATTTACAATGCAATGCAA+AGG - chr4_2:46051021-46051040 None:intergenic 30.0%
CATTAGGTGAAATTTGTAGT+AGG + chr4_2:46051166-46051185 Msa0602430:three_prime_UTR 30.0%
GGAGAAGTAAGAAAAGAGTA+CGG - chr4_2:46045273-46045292 None:intergenic 35.0%
!!! TGGTTTTGGTTTTGTTGAGT+GGG - chr4_2:46045347-46045366 None:intergenic 35.0%
!!! TTGGTTTTGGTTTTGTTGAG+TGG - chr4_2:46045348-46045367 None:intergenic 35.0%
!!! TTGTGTTGTTGGTTTGGTTT+TGG - chr4_2:46045361-46045380 None:intergenic 35.0%
! AACACTTTGTGTTGTTGGTT+TGG - chr4_2:46045367-46045386 None:intergenic 35.0%
CAACCTCGTTTCAACTAAAA+CGG + chr4_2:46045388-46045407 Msa0602430:five_prime_UTR 35.0%
!!! TTACCGTTTTAGTTGAAACG+AGG - chr4_2:46045394-46045413 None:intergenic 35.0%
AACTTCACTTCATTTCAGGA+AGG + chr4_2:46045412-46045431 Msa0602430:five_prime_UTR 35.0%
GGACCTTCATACAGATAAAT+AGG - chr4_2:46045694-46045713 None:intergenic 35.0%
TCTCTGTAATATTGAAGCTC+AGG + chr4_2:46045926-46045945 Msa0602430:intron 35.0%
CTCTGTAATATTGAAGCTCA+GGG + chr4_2:46045927-46045946 Msa0602430:intron 35.0%
GAAGGAACAGACAAAAGAAT+TGG - chr4_2:46046279-46046298 None:intergenic 35.0%
TGCATTATCTTCTTTCGTTG+TGG + chr4_2:46046390-46046409 Msa0602430:intron 35.0%
TAGTTATAGGCAAAGTCCTT+CGG + chr4_2:46046569-46046588 Msa0602430:intron 35.0%
ATTAAACCGGATTAAACCGA+AGG - chr4_2:46046588-46046607 None:intergenic 35.0%
TCCGGTTTAATCAATGAATC+AGG + chr4_2:46046597-46046616 Msa0602430:intron 35.0%
! CCCTGATTCATTGATTAAAC+CGG - chr4_2:46046601-46046620 None:intergenic 35.0%
CCGGTTTAATCAATGAATCA+GGG + chr4_2:46046598-46046617 Msa0602430:intron 35.0%
CGGTTTAATCAATGAATCAG+GGG + chr4_2:46046599-46046618 Msa0602430:intron 35.0%
ATTTCTATGCGTGACTTTGT+CGG + chr4_2:46046633-46046652 Msa0602430:intron 35.0%
!! CAGAGCTTTGAATATGAAGT+AGG - chr4_2:46046762-46046781 None:intergenic 35.0%
TCTAATTTAGCCGCAAAACA+TGG - chr4_2:46046790-46046809 None:intergenic 35.0%
! ATGTTTTGCGGCTAAATTAG+AGG + chr4_2:46046789-46046808 Msa0602430:intron 35.0%
! TGTTTTGCGGCTAAATTAGA+GGG + chr4_2:46046790-46046809 Msa0602430:intron 35.0%
CTATGATGAATTGAAATGGG+TGG + chr4_2:46046848-46046867 Msa0602430:intron 35.0%
! CTTTAAAGATGGGGACATAT+TGG + chr4_2:46046879-46046898 Msa0602430:intron 35.0%
GAAAACTCAGTATTCACTCA+AGG + chr4_2:46047171-46047190 Msa0602430:intron 35.0%
TCAATCTCACCAATTACTAG+CGG + chr4_2:46047213-46047232 Msa0602430:intron 35.0%
TACTAAATCCCGCTAGTAAT+TGG - chr4_2:46047225-46047244 None:intergenic 35.0%
AATTTACTTGCTCTTCCCTA+CGG - chr4_2:46047475-46047494 None:intergenic 35.0%
TTCTGTGGCACATTATATTG+TGG + chr4_2:46047493-46047512 Msa0602430:intron 35.0%
CTGAATTGTTACTGTACTTG+TGG + chr4_2:46047698-46047717 Msa0602430:intron 35.0%
TGAAGATTACCTTGTCTTAG+GGG - chr4_2:46047820-46047839 None:intergenic 35.0%
! TCCGCTCTATTGATTAACAA+GGG - chr4_2:46047981-46048000 None:intergenic 35.0%
! TTCCGCTCTATTGATTAACA+AGG - chr4_2:46047982-46048001 None:intergenic 35.0%
TTGTTAATCAATAGAGCGGA+AGG + chr4_2:46047981-46048000 Msa0602430:intron 35.0%
TGTTAATCAATAGAGCGGAA+GGG + chr4_2:46047982-46048001 Msa0602430:intron 35.0%
ATGTGGATATCTCTCTTAGT+CGG - chr4_2:46048046-46048065 None:intergenic 35.0%
GATATCCACATTTAGTTGAG+AGG + chr4_2:46048055-46048074 Msa0602430:intron 35.0%
TCATAGGTTTCTTCAACAAG+AGG - chr4_2:46048096-46048115 None:intergenic 35.0%
TGCATTTAGGGGTCATAAAA+GGG - chr4_2:46048233-46048252 None:intergenic 35.0%
ATGCATTTAGGGGTCATAAA+AGG - chr4_2:46048234-46048253 None:intergenic 35.0%
!!! GTTTCCTTTTTGGTTGAAGT+AGG + chr4_2:46048280-46048299 Msa0602430:intron 35.0%
!! CAAAAGGTGCCTTAAAAAAG+AGG - chr4_2:46048356-46048375 None:intergenic 35.0%
TGAGTTACCATTTGTGTGAA+AGG + chr4_2:46048506-46048525 Msa0602430:intron 35.0%
!! TGGTAAAAACTTGTTACCTC+AGG - chr4_2:46048832-46048851 None:intergenic 35.0%
! AAGTTATGCATTGCCTTGTT+TGG - chr4_2:46049109-46049128 None:intergenic 35.0%
! CCAATTCAGATATTTTGCTG+GGG - chr4_2:46049277-46049296 None:intergenic 35.0%
AGATGATTTGAAGAAGGTGA+AGG + chr4_2:46049319-46049338 Msa0602430:CDS 35.0%
ATGATTCAGACGAAATAAGC+TGG - chr4_2:46049346-46049365 None:intergenic 35.0%
!! CTCTTTGAGTTTTGCAGATA+GGG - chr4_2:46049420-46049439 None:intergenic 35.0%
!! ACTCTTTGAGTTTTGCAGAT+AGG - chr4_2:46049421-46049440 None:intergenic 35.0%
TCAAACTCAACAAGCTGAAT+CGG + chr4_2:46049652-46049671 Msa0602430:CDS 35.0%
ATCAGAATCACTTTCTCAGA+TGG + chr4_2:46049709-46049728 Msa0602430:CDS 35.0%
!! GTTCTTTGCTATTCTTGAGT+TGG - chr4_2:46049748-46049767 None:intergenic 35.0%
TCACTCTGTTCAAAATCTTG+TGG + chr4_2:46049979-46049998 Msa0602430:CDS 35.0%
GGATGATTGTAAATTCGAGA+AGG + chr4_2:46050000-46050019 Msa0602430:CDS 35.0%
!! TGTTCTTTGAAGTCTGAGAT+TGG + chr4_2:46050076-46050095 Msa0602430:CDS 35.0%
! GTTGATGGAGCAGATAAAAT+CGG + chr4_2:46050186-46050205 Msa0602430:CDS 35.0%
AGAGTTGAAGGCTAATCTAA+TGG + chr4_2:46050270-46050289 Msa0602430:CDS 35.0%
GAAAATCAACAAGAGTTGCT+TGG + chr4_2:46050498-46050517 Msa0602430:CDS 35.0%
TCTTAGTTCGCTTTCCATTT+CGG - chr4_2:46050677-46050696 None:intergenic 35.0%
AAATGGAAAGCGAACTAAGA+AGG + chr4_2:46050677-46050696 Msa0602430:CDS 35.0%
TTAAGGTACAGTCTGATCAA+TGG + chr4_2:46050701-46050720 Msa0602430:CDS 35.0%
! TGAAGAAGTTTGGAGTCTTA+TGG + chr4_2:46050887-46050906 Msa0602430:CDS 35.0%
ACTCAACTTTGCATTGCATT+GGG + chr4_2:46051119-46051138 Msa0602430:three_prime_UTR 35.0%
! GAAATTTGTAGTAGGTGTTG+TGG + chr4_2:46051174-46051193 Msa0602430:three_prime_UTR 35.0%
TTAACGTGTCTCGTATCGTA+TGG - chr4_2:46045171-46045190 None:intergenic 40.0%
ATACAGTATGCTATGCTACC+CGG + chr4_2:46045191-46045210 Msa0602430:five_prime_UTR 40.0%
!! TTTAACTTGAGCTTTGCGAC+CGG - chr4_2:46045213-46045232 None:intergenic 40.0%
!! GTACGGTTTTGTCGTTTGAT+AGG - chr4_2:46045256-46045275 None:intergenic 40.0%
!!! GGTTTTGGTTTTGTTGAGTG+GGG - chr4_2:46045346-46045365 None:intergenic 40.0%
GTTGCAACACTTTGTGTTGT+TGG - chr4_2:46045372-46045391 None:intergenic 40.0%
CGGTAACTTCACTTCATTTC+AGG + chr4_2:46045408-46045427 Msa0602430:five_prime_UTR 40.0%
!! GGTAATGGACTTACTGGTTA+AGG - chr4_2:46045502-46045521 None:intergenic 40.0%
!! GAAAGTGGTAATGGACTTAC+TGG - chr4_2:46045508-46045527 None:intergenic 40.0%
ATATGCTGCATTGTGGTTGA+AGG - chr4_2:46045572-46045591 None:intergenic 40.0%
CAAAGTCCTTCGGTTTAATC+CGG + chr4_2:46046579-46046598 Msa0602430:intron 40.0%
TTTCTATGCGTGACTTTGTC+GGG + chr4_2:46046634-46046653 Msa0602430:intron 40.0%
GACTTTGTCGGGTTAATGAT+TGG + chr4_2:46046645-46046664 Msa0602430:intron 40.0%
CAATCTCACCAATTACTAGC+GGG + chr4_2:46047214-46047233 Msa0602430:intron 40.0%
ATATTCGGGTATTCGATGTG+AGG - chr4_2:46047344-46047363 None:intergenic 40.0%
GGAAGAGCAAGTAAATTCTG+TGG + chr4_2:46047478-46047497 Msa0602430:intron 40.0%
ATTAATGTGTTCACGCAGGA+TGG - chr4_2:46047606-46047625 None:intergenic 40.0%
GATTAACAAGGGGAGTCATA+AGG - chr4_2:46047970-46047989 None:intergenic 40.0%
! CCGCTCTATTGATTAACAAG+GGG - chr4_2:46047980-46047999 None:intergenic 40.0%
CCCCTTGTTAATCAATAGAG+CGG + chr4_2:46047977-46047996 Msa0602430:intron 40.0%
GTTAATCAATAGAGCGGAAG+GGG + chr4_2:46047983-46048002 Msa0602430:intron 40.0%
TGTGGATATCTCTCTTAGTC+GGG - chr4_2:46048045-46048064 None:intergenic 40.0%
GGAACCTACTTCAACCAAAA+AGG - chr4_2:46048287-46048306 None:intergenic 40.0%
TCTCCCATTCCTCAGTTAAA+GGG - chr4_2:46048311-46048330 None:intergenic 40.0%
ATCTCCCATTCCTCAGTTAA+AGG - chr4_2:46048312-46048331 None:intergenic 40.0%
TTAACTGAGGAATGGGAGAT+TGG + chr4_2:46048312-46048331 Msa0602430:intron 40.0%
TAACTGAGGAATGGGAGATT+GGG + chr4_2:46048313-46048332 Msa0602430:intron 40.0%
AAAGAGGTAACAACTCCCTT+GGG - chr4_2:46048340-46048359 None:intergenic 40.0%
AAAAGAGGTAACAACTCCCT+TGG - chr4_2:46048341-46048360 None:intergenic 40.0%
CTCAGTTCCTTTCACACAAA+TGG - chr4_2:46048516-46048535 None:intergenic 40.0%
CATTTGTGTGAAAGGAACTG+AGG + chr4_2:46048514-46048533 Msa0602430:intron 40.0%
!! AACTTGTTACCTCAGGAACT+GGG - chr4_2:46048825-46048844 None:intergenic 40.0%
!! AAACTTGTTACCTCAGGAAC+TGG - chr4_2:46048826-46048845 None:intergenic 40.0%
! AAGCTATCTTGGAGAGCTTT+TGG + chr4_2:46048931-46048950 Msa0602430:intron 40.0%
CCCCAGCAAAATATCTGAAT+TGG + chr4_2:46049274-46049293 Msa0602430:CDS 40.0%
! TATCTAGAGCTATGTGCTAC+TGG + chr4_2:46049452-46049471 Msa0602430:CDS 40.0%
! CACGTTCTTCTGTGATTTTC+TGG - chr4_2:46049499-46049518 None:intergenic 40.0%
TGCTTTGTCTTCTGCATTGA+AGG + chr4_2:46049577-46049596 Msa0602430:CDS 40.0%
! GCTGAAAGCACAACTTGAAT+TGG + chr4_2:46049610-46049629 Msa0602430:CDS 40.0%
! CTTGAATTGGTAGCTACTTG+TGG + chr4_2:46049623-46049642 Msa0602430:CDS 40.0%
TAGCAAAGAACCTGAAACTC+AGG + chr4_2:46049757-46049776 Msa0602430:CDS 40.0%
AAGATTTGTGCCTGAGTTTC+AGG - chr4_2:46049770-46049789 None:intergenic 40.0%
AAAGAACCGTCGAGATTCTA+AGG + chr4_2:46049825-46049844 Msa0602430:CDS 40.0%
AAGAACCGTCGAGATTCTAA+GGG + chr4_2:46049826-46049845 Msa0602430:CDS 40.0%
ATGTTCCAACTCCAAAGCAA+TGG - chr4_2:46049885-46049904 None:intergenic 40.0%
!! AGTTGGAACATTCTAGAGCA+AGG + chr4_2:46049894-46049913 Msa0602430:CDS 40.0%
!! GTTGGAACATTCTAGAGCAA+GGG + chr4_2:46049895-46049914 Msa0602430:CDS 40.0%
!! CTTTGAAGTCTGAGATTGGA+CGG + chr4_2:46050080-46050099 Msa0602430:CDS 40.0%
GAGCAGATAAAATCGGAATC+AGG + chr4_2:46050193-46050212 Msa0602430:CDS 40.0%
! GAAGGCTAATCTAATGGACA+AGG + chr4_2:46050276-46050295 Msa0602430:CDS 40.0%
TTCCATGATACCTTGCAACT+CGG - chr4_2:46050305-46050324 None:intergenic 40.0%
AAGCGAACTAAGAAGGCTTA+AGG + chr4_2:46050684-46050703 Msa0602430:CDS 40.0%
TACTGAGAGATCTGTGTCTT+TGG + chr4_2:46050780-46050799 Msa0602430:CDS 40.0%
GGTAACATGCTGAAGAAGTT+TGG + chr4_2:46050877-46050896 Msa0602430:CDS 40.0%
CACTCAACTTTGCATTGCAT+TGG + chr4_2:46051118-46051137 Msa0602430:three_prime_UTR 40.0%
GTGTCTCGTATCGTATGGTA+TGG - chr4_2:46045166-46045185 None:intergenic 45.0%
! TTAACTTGAGCTTTGCGACC+GGG - chr4_2:46045212-46045231 None:intergenic 45.0%
CGTTGTGGAGTTCAATGTCT+TGG + chr4_2:46046405-46046424 Msa0602430:intron 45.0%
! CTCTGTCATGCCATGTTTTG+CGG + chr4_2:46046777-46046796 Msa0602430:intron 45.0%
TGAGTCCTCGAAGTTGAACT+CGG - chr4_2:46047280-46047299 None:intergenic 45.0%
TGTTACTGTACTTGTGGGTC+AGG + chr4_2:46047704-46047723 Msa0602430:intron 45.0%
CAATGCATACCCCTAAGACA+AGG + chr4_2:46047808-46047827 Msa0602430:exon 45.0%
AGGCACCTCTCAACTAAATG+TGG - chr4_2:46048063-46048082 None:intergenic 45.0%
CAACAAGAGGTCATCGTATC+AGG - chr4_2:46048083-46048102 None:intergenic 45.0%
TAGGTTCCTCCCTTTAACTG+AGG + chr4_2:46048299-46048318 Msa0602430:intron 45.0%
TCCTCCCTTTAACTGAGGAA+TGG + chr4_2:46048304-46048323 Msa0602430:intron 45.0%
CCTCCCTTTAACTGAGGAAT+GGG + chr4_2:46048305-46048324 Msa0602430:intron 45.0%
! CAGAAGTGGTTCTTCTGAAG+TGG + chr4_2:46048651-46048670 Msa0602430:intron 45.0%
GACTAGTAGTAGTCCTCAGT+TGG - chr4_2:46048708-46048727 None:intergenic 45.0%
GTCAACTGAGAGATGCTGTT+GGG - chr4_2:46049552-46049571 None:intergenic 45.0%
AGTCAACTGAGAGATGCTGT+TGG - chr4_2:46049553-46049572 None:intergenic 45.0%
GTCATCCCTTAGAATCTCGA+CGG - chr4_2:46049834-46049853 None:intergenic 45.0%
!! CAACTCCATTGCTTTGGAGT+TGG + chr4_2:46049877-46049896 Msa0602430:CDS 45.0%
! AACCGAGTTGCAAGGTATCA+TGG + chr4_2:46050300-46050319 Msa0602430:CDS 45.0%
CTTCAGCATCTCGTTCTCTT+CGG - chr4_2:46050476-46050495 None:intergenic 45.0%
GGATGACAGTAAAGTGAGAG+AGG + chr4_2:46050519-46050538 Msa0602430:CDS 45.0%
AGAGGAAATAGAGAAAGCCG+AGG + chr4_2:46050537-46050556 Msa0602430:CDS 45.0%
TACGAAACTCGGGATTGTGA+TGG + chr4_2:46050579-46050598 Msa0602430:CDS 45.0%
AGACAGAAGCAACCGTAAAG+TGG + chr4_2:46050609-46050628 Msa0602430:CDS 45.0%
!! TTGTGCTGCTTCTAACTGCT+CGG - chr4_2:46050644-46050663 None:intergenic 45.0%
AGGTACAGTCTGATCAATGG+AGG + chr4_2:46050704-46050723 Msa0602430:CDS 45.0%
ACAGTCTGATCAATGGAGGA+AGG + chr4_2:46050708-46050727 Msa0602430:CDS 45.0%
ATGATTTCGGCAGGGAACAA+TGG + chr4_2:46050751-46050770 Msa0602430:CDS 45.0%
TGATTTCGGCAGGGAACAAT+GGG + chr4_2:46050752-46050771 Msa0602430:CDS 45.0%
!! AACAAAAAATTAATTTAATT+AGG + chr4_2:46045719-46045738 Msa0602430:intron 5.0%
!! ATTAAGATTAAAATATATTT+AGG - chr4_2:46046004-46046023 None:intergenic 5.0%
!!! TTATAATTTTTTATAAAAAG+AGG + chr4_2:46046237-46046256 Msa0602430:intron 5.0%
!!! TATTTTTCAATTTAAAAATA+CGG - chr4_2:46047099-46047118 None:intergenic 5.0%
TGGGAAGTAAGTGAACGTGC+TGG - chr4_2:46045321-46045340 None:intergenic 50.0%
!!! GGTTTTGTTGAGTGGGGACT+GGG - chr4_2:46045340-46045359 None:intergenic 50.0%
!!! TGGTTTTGTTGAGTGGGGAC+TGG - chr4_2:46045341-46045360 None:intergenic 50.0%
TCGAAGTTGAACTCGGGTGA+AGG - chr4_2:46047273-46047292 None:intergenic 50.0%
TTCACCCGAGTTCAACTTCG+AGG + chr4_2:46047272-46047291 Msa0602430:intron 50.0%
GAGTCCTCGAAGTTGAACTC+GGG - chr4_2:46047279-46047298 None:intergenic 50.0%
CAAGGGGAGTCATAAGGTTG+TGG - chr4_2:46047964-46047983 None:intergenic 50.0%
CCCATTCCTCAGTTAAAGGG+AGG - chr4_2:46048308-46048327 None:intergenic 50.0%
AATGGGAGATTGGGACCCAA+GGG + chr4_2:46048322-46048341 Msa0602430:intron 50.0%
GCACGCGGAGAAACTTTCTT+AGG - chr4_2:46048679-46048698 None:intergenic 50.0%
! TGACTTGCGATCAGCGAGTT+TGG - chr4_2:46048794-46048813 None:intergenic 50.0%
GCAAGACTTCGAGGAATCCA+AGG + chr4_2:46049382-46049401 Msa0602430:CDS 50.0%
TAGGGCTAAGAGTTGCTCCT+TGG - chr4_2:46049402-46049421 None:intergenic 50.0%
! CAGAAGAACGTGATAGCGCA+TGG + chr4_2:46049507-46049526 Msa0602430:CDS 50.0%
! ACGTGATAGCGCATGGAAGT+CGG + chr4_2:46049514-46049533 Msa0602430:CDS 50.0%
TGGCTGCAACTCCATTGCTT+TGG + chr4_2:46049871-46049890 Msa0602430:CDS 50.0%
! CAGCAATGCGTACGAGTTGA+TGG + chr4_2:46050171-46050190 Msa0602430:CDS 50.0%
AGGCCAGAGACAATGTGAGT+TGG + chr4_2:46050213-46050232 Msa0602430:CDS 50.0%
CCTCCAACTCACATTGTCTC+TGG - chr4_2:46050219-46050238 None:intergenic 50.0%
! CCAGAGACAATGTGAGTTGG+AGG + chr4_2:46050216-46050235 Msa0602430:CDS 50.0%
GACAAGGAAACCGAGTTGCA+AGG + chr4_2:46050292-46050311 Msa0602430:CDS 50.0%
GAAACTCGGGATTGTGATGG+AGG + chr4_2:46050582-46050601 Msa0602430:CDS 50.0%
AAGCAACCGTAAAGTGGCGA+GGG + chr4_2:46050615-46050634 Msa0602430:CDS 50.0%
GCAGTTAGAAGCAGCACAAG+TGG + chr4_2:46050645-46050664 Msa0602430:CDS 50.0%
ACAAGTGGCAAGCTCCGAAA+TGG + chr4_2:46050660-46050679 Msa0602430:CDS 50.0%
GGCAGCTGCTGCTATGATTT+CGG + chr4_2:46050738-46050757 Msa0602430:CDS 50.0%
CTGCTGCTATGATTTCGGCA+GGG + chr4_2:46050743-46050762 Msa0602430:CDS 50.0%
TGTGGTAGGGTCTCTACCGT+AGG + chr4_2:46047456-46047475 Msa0602430:intron 55.0%
GTGGTAGGGTCTCTACCGTA+GGG + chr4_2:46047457-46047476 Msa0602430:intron 55.0%
GAATGGGAGATTGGGACCCA+AGG + chr4_2:46048321-46048340 Msa0602430:intron 55.0%
ACCTCAGGAACTGGGCTTCT+GGG - chr4_2:46048817-46048836 None:intergenic 55.0%
TACCTCAGGAACTGGGCTTC+TGG - chr4_2:46048818-46048837 None:intergenic 55.0%
GCAAGCTCAGCAAGACTTCG+AGG + chr4_2:46049373-46049392 Msa0602430:CDS 55.0%
GACGTTGCGAGAGACGTAGA+TGG + chr4_2:46049851-46049870 Msa0602430:CDS 55.0%
GAAGCAACCGTAAAGTGGCG+AGG + chr4_2:46050614-46050633 Msa0602430:CDS 55.0%
TCAATGGAGGAAGGCTGCAG+AGG + chr4_2:46050717-46050736 Msa0602430:CDS 55.0%
GCTGCTGCTATGATTTCGGC+AGG + chr4_2:46050742-46050761 Msa0602430:CDS 55.0%
CTCAGTTGGCGTACAGCACG+CGG - chr4_2:46048694-46048713 None:intergenic 60.0%
ACCCAGAAGCCCAGTTCCTG+AGG + chr4_2:46048813-46048832 Msa0602430:intron 60.0%
CGCGAGGCGGTTACGAAACT+CGG + chr4_2:46050568-46050587 Msa0602430:CDS 60.0%
GCGAGGCGGTTACGAAACTC+GGG + chr4_2:46050569-46050588 Msa0602430:CDS 60.0%
! CGGTCACCCTCGCCACTTTA+CGG - chr4_2:46050624-46050643 None:intergenic 60.0%
CGCGTGCTGTACGCCAACTG+AGG + chr4_2:46048692-46048711 Msa0602430:CDS 65.0%
AGCCGAGGCTGCAAAACGCG+AGG + chr4_2:46050552-46050571 Msa0602430:CDS 65.0%
! CGCCTCGCGTTTTGCAGCCT+CGG - chr4_2:46050557-46050576 None:intergenic 65.0%
CGAGGCTGCAAAACGCGAGG+CGG + chr4_2:46050555-46050574 Msa0602430:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 46045158 46051197 46045158 ID=Msa0602430;Name=Msa0602430
chr4_2 mRNA 46045158 46051197 46045158 ID=Msa0602430-mRNA-1;Parent=Msa0602430;Name=Msa0602430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=434|0.66|0.75|1|0.66|0.75|4|270|589
chr4_2 exon 46045158 46045507 46045158 ID=Msa0602430-mRNA-1:exon:10350;Parent=Msa0602430-mRNA-1
chr4_2 exon 46047726 46047829 46047726 ID=Msa0602430-mRNA-1:exon:10351;Parent=Msa0602430-mRNA-1
chr4_2 exon 46048654 46048741 46048654 ID=Msa0602430-mRNA-1:exon:10352;Parent=Msa0602430-mRNA-1
chr4_2 exon 46049266 46051197 46049266 ID=Msa0602430-mRNA-1:exon:10353;Parent=Msa0602430-mRNA-1
chr4_2 five_prime_UTR 46045158 46045507 46045158 ID=Msa0602430-mRNA-1:five_prime_utr;Parent=Msa0602430-mRNA-1
chr4_2 five_prime_UTR 46047726 46047809 46047726 ID=Msa0602430-mRNA-1:five_prime_utr;Parent=Msa0602430-mRNA-1
chr4_2 CDS 46047810 46047829 46047810 ID=Msa0602430-mRNA-1:cds;Parent=Msa0602430-mRNA-1
chr4_2 CDS 46048654 46048741 46048654 ID=Msa0602430-mRNA-1:cds;Parent=Msa0602430-mRNA-1
chr4_2 CDS 46049266 46050927 46049266 ID=Msa0602430-mRNA-1:cds;Parent=Msa0602430-mRNA-1
chr4_2 three_prime_UTR 46050928 46051197 46050928 ID=Msa0602430-mRNA-1:three_prime_utr;Parent=Msa0602430-mRNA-1
Gene Sequence

>Msa0602430

ATGCATACCCCTAAGACAAGAAGTGGTTCTTCTGAAGTGGTGCCTAAGAAAGTTTCTCCGCGTGCTGTACGCCAACTGAGGACTACTACTAGTCTAGACACTGACTCTAGGAAACGCCCCAGCAAAATATCTGAATTGGAATCGCAAATTTCTCAACTTCAAGATGATTTGAAGAAGGTGAAGGACCAGCTTATTTCGTCTGAATCATGCAAGAAGCAAGCTCAGCAAGACTTCGAGGAATCCAAGGAGCAACTCTTAGCCCTATCTGCAAAACTCAAAGAGTCTCAAAAGCAATATCTAGAGCTATGTGCTACTGGAGAAGCTCGCGATATCGAACTCCAGAAAATCACAGAAGAACGTGATAGCGCATGGAAGTCGGAGCTCGATGTCTCCCAACAGCATCTCTCAGTTGACTCTACTGCTTTGTCTTCTGCATTGAAGGAAATTCAGCTGCTGAAAGCACAACTTGAATTGGTAGCTACTTGTGGTAGTGTTCAAACTCAACAAGCTGAATCGGCAGATGAAGAGCTACTGAACCTAAATCAAAACTTATCAGAATCACTTTCTCAGATGGAGAACATAAAAAACCAACTCAAGAATAGCAAAGAACCTGAAACTCAGGCACAAATCTTTATTGATGAAACTTTGTTGCAACTCAAGTCTGCGAAAAGAACCGTCGAGATTCTAAGGGATGACGTTGCGAGAGACGTAGATGGCTGCAACTCCATTGCTTTGGAGTTGGAACATTCTAGAGCAAGGGTGAACACGCTAGCAACACTTGTTAGCAAATTTAAGACACGCATCAACGATAATGAATCGATTCACTCTGTTCAAAATCTTGTGGATGATTGTAAATTCGAGAAGGAAAGTGAAATATTGAGAAATAGAGAGGATCCTAATCATATTGAAGAAGAGATTTGTTCTTTGAAGTCTGAGATTGGACGGCTGAGATCTGCTGTAGAGACTGCCGAGACTAAATATCAAGAACAACAGATTCAAAGCACAGTGCAAATCAGCAATGCGTACGAGTTGATGGAGCAGATAAAATCGGAATCAGGCCAGAGACAATGTGAGTTGGAGGCTGAATTACAAAGAAAGAAAACTGATATTGAAGAGTTGAAGGCTAATCTAATGGACAAGGAAACCGAGTTGCAAGGTATCATGGAAGAGAATGAGAATTTAAATTCGAAGCTTGAAAAGAATATGTCATCACAAAATGAACATGGACTTCAAAAGGAACTCAAAAGATTGGAAGAACGTGTTGTTGAATTGAAAGCTGATATGATGGATAAAGAAACAACGTTGCAAAGCATATCCGAAGAGAACGAGATGCTGAAGATGAAAATCAACAAGAGTTGCTTGGATGACAGTAAAGTGAGAGAGGAAATAGAGAAAGCCGAGGCTGCAAAACGCGAGGCGGTTACGAAACTCGGGATTGTGATGGAGGAAGCAGACAGAAGCAACCGTAAAGTGGCGAGGGTGACCGAGCAGTTAGAAGCAGCACAAGTGGCAAGCTCCGAAATGGAAAGCGAACTAAGAAGGCTTAAGGTACAGTCTGATCAATGGAGGAAGGCTGCAGAGGCAGCTGCTGCTATGATTTCGGCAGGGAACAATGGGAAGCTTACTGAGAGATCTGTGTCTTTGGACAATAATAATACCTATAAGTATTCACCTAATTATGCTGAAGATGTTGATGATGATTTCCAGAGAAAGAAAAATGGTAACATGCTGAAGAAGTTTGGAGTCTTATGGAAGAAGCCTCAAAAATAG
Protein sequence

>Msa0602430

MHTPKTRSGSSEVVPKKVSPRAVRQLRTTTSLDTDSRKRPSKISELESQISQLQDDLKKVKDQLISSESCKKQAQQDFEESKEQLLALSAKLKESQKQYLELCATGEARDIELQKITEERDSAWKSELDVSQQHLSVDSTALSSALKEIQLLKAQLELVATCGSVQTQQAESADEELLNLNQNLSESLSQMENIKNQLKNSKEPETQAQIFIDETLLQLKSAKRTVEILRDDVARDVDGCNSIALELEHSRARVNTLATLVSKFKTRINDNESIHSVQNLVDDCKFEKESEILRNREDPNHIEEEICSLKSEIGRLRSAVETAETKYQEQQIQSTVQISNAYELMEQIKSESGQRQCELEAELQRKKTDIEELKANLMDKETELQGIMEENENLNSKLEKNMSSQNEHGLQKELKRLEERVVELKADMMDKETTLQSISEENEMLKMKINKSCLDDSKVREEIEKAEAAKREAVTKLGIVMEEADRSNRKVARVTEQLEAAQVASSEMESELRRLKVQSDQWRKAAEAAAAMISAGNNGKLTERSVSLDNNNTYKYSPNYAEDVDDDFQRKKNGNMLKKFGVLWKKPQK*