AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355370 MtrunA17_Chr3g0115781 91.749 509 42 0 1 509 1 509 0.0 951
Msa1355370 MtrunA17_Chr3g0115741 80.196 510 100 1 1 509 1 510 0.0 837
Msa1355370 MtrunA17_Chr3g0115751 78.125 512 109 1 1 509 1 512 0.0 822
Msa1355370 MtrunA17_Chr3g0115721 75.246 509 124 1 1 509 1 507 0.0 802
Msa1355370 MtrunA17_Chr3g0115731 70.138 509 115 5 1 502 1 479 0.0 711
Msa1355370 MtrunA17_Chr3g0115711 65.469 501 170 2 1 501 1 498 0.0 696
Msa1355370 MtrunA17_Chr3g0078971 52.016 496 229 7 17 508 15 505 0.0 533
Msa1355370 MtrunA17_Chr3g0078991 52.684 503 230 6 10 507 8 507 0.0 529
Msa1355370 MtrunA17_Chr5g0394341 49.194 496 242 7 16 505 13 504 5.62e-179 513
Msa1355370 MtrunA17_Chr4g0065311 49.795 488 240 4 11 497 7 490 8.51e-179 511
Msa1355370 MtrunA17_Chr5g0445601 51.205 498 236 5 1 495 1 494 1.08e-172 496
Msa1355370 MtrunA17_Chr7g0257631 51.205 498 236 5 1 495 35 528 8.17e-172 495
Msa1355370 MtrunA17_Chr4g0065324 48.884 493 246 5 4 495 9 496 1.18e-169 488
Msa1355370 MtrunA17_Chr5g0420841 48.583 494 247 5 15 503 11 502 1.24e-167 483
Msa1355370 MtrunA17_Chr5g0417611 48.538 513 255 6 1 508 1 509 3.60e-166 480
Msa1355370 MtrunA17_Chr5g0437021 48.276 493 248 4 12 499 7 497 1.85e-165 478
Msa1355370 MtrunA17_Chr1g0205691 47.793 521 253 10 1 509 1 514 5.08e-163 472
Msa1355370 MtrunA17_Chr1g0164851 47.942 486 249 3 16 499 14 497 1.42e-162 471
Msa1355370 MtrunA17_Chr1g0164871 47.737 486 250 3 16 499 14 497 1.67e-162 470
Msa1355370 MtrunA17_Chr3g0128081 48.438 512 254 6 1 507 1 507 1.11e-161 468
Msa1355370 MtrunA17_Chr8g0390261 47.561 492 249 7 20 508 21 506 1.18e-159 463
Msa1355370 MtrunA17_Chr4g0048411 50.202 496 240 6 16 506 14 507 4.12e-159 462
Msa1355370 MtrunA17_Chr3g0085971 46.881 497 257 5 14 505 10 504 8.68e-159 461
Msa1355370 MtrunA17_Chr1g0205671 45.040 504 266 8 1 499 1 498 2.08e-157 457
Msa1355370 MtrunA17_Chr1g0205681 44.246 504 271 7 1 499 1 499 3.29e-157 456
Msa1355370 MtrunA17_Chr6g0486681 44.970 507 271 7 1 503 1 503 1.62e-155 452
Msa1355370 MtrunA17_Chr6g0486671 44.970 507 271 7 1 503 1 503 1.62e-155 452
Msa1355370 MtrunA17_Chr8g0390141 45.951 494 259 8 20 509 21 510 1.68e-154 450
Msa1355370 MtrunA17_Chr4g0048051 49.798 496 242 6 16 507 14 506 4.28e-148 434
Msa1355370 MtrunA17_Chr3g0128171 47.682 453 229 5 52 498 1 451 4.07e-145 424
Msa1355370 MtrunA17_Chr3g0078791 47.140 437 206 5 73 506 17 431 2.93e-137 403
Msa1355370 MtrunA17_Chr3g0115771 61.342 313 76 4 152 463 5 273 1.86e-120 354
Msa1355370 MtrunA17_Chr4g0065351 48.538 342 171 4 162 502 1 338 2.71e-110 332
Msa1355370 MtrunA17_Chr4g0036021 31.211 487 287 10 29 493 31 491 2.66e-61 209
Msa1355370 MtrunA17_Chr6g0485661 29.935 461 289 8 30 479 63 500 7.49e-61 208
Msa1355370 MtrunA17_Chr4g0034681 29.918 488 293 12 29 493 34 495 1.18e-60 207
Msa1355370 MtrunA17_Chr3g0115761 87.273 110 14 0 52 161 1 110 8.64e-58 187
Msa1355370 MtrunA17_Chr3g0144361 30.123 488 290 13 29 491 32 493 1.79e-57 199
Msa1355370 MtrunA17_Chr8g0373531 32.569 436 242 9 92 492 67 485 2.82e-57 198
Msa1355370 MtrunA17_Chr8g0390521 26.518 494 328 8 8 489 1 471 2.36e-54 190
Msa1355370 MtrunA17_Chr2g0282031 30.042 476 293 14 26 489 53 500 2.95e-54 191
Msa1355370 MtrunA17_Chr5g0432581 27.539 512 316 10 8 492 2 485 7.79e-51 181
Msa1355370 MtrunA17_Chr4g0021771 26.273 491 306 13 22 492 51 505 9.27e-51 181
Msa1355370 MtrunA17_Chr4g0039651 27.824 478 302 12 26 486 46 497 2.10e-46 169
Msa1355370 MtrunA17_Chr6g0457781 27.862 463 293 9 31 486 111 539 2.37e-44 164
Msa1355370 MtrunA17_Chr4g0065341 48.667 150 77 0 4 153 6 155 4.06e-44 153
Msa1355370 MtrunA17_Chr7g0250881 27.332 461 298 10 31 486 71 499 3.58e-43 160
Msa1355370 MtrunA17_Chr8g0373181 26.799 403 288 2 84 486 87 482 1.87e-42 157
Msa1355370 MtrunA17_Chr1g0213611 25.979 485 309 12 27 492 78 531 1.71e-40 153
Msa1355370 MtrunA17_Chr7g0214451 27.368 475 301 14 31 492 39 482 2.01e-40 152
Msa1355370 MtrunA17_Chr8g0373191 28.011 357 238 5 136 486 111 454 7.01e-40 150
Msa1355370 MtrunA17_Chr1g0213631 27.342 395 266 9 108 492 52 435 5.79e-39 147
Msa1355370 MtrunA17_Chr5g0403831 26.603 421 278 9 97 492 84 498 2.85e-38 146
Msa1355370 MtrunA17_Chr7g0259471 27.027 407 277 8 84 486 80 470 1.23e-37 144
Msa1355370 MtrunA17_Chr4g0032021 26.860 484 306 11 24 486 95 551 1.67e-37 145
Msa1355370 MtrunA17_Chr1g0155221 24.390 410 290 4 84 486 89 485 5.60e-35 137
Msa1355370 MtrunA17_Chr3g0119401 28.294 463 295 13 30 486 98 529 1.12e-34 136
Msa1355370 MtrunA17_Chr2g0303731 30.588 340 209 8 36 366 37 358 4.62e-34 135
Msa1355370 MtrunA17_Chr7g0259221 27.027 407 277 8 84 486 82 472 6.36e-34 134
Msa1355370 MtrunA17_Chr2g0303701 31.361 338 208 8 36 367 37 356 7.06e-34 135
Msa1355370 MtrunA17_Chr5g0446681 41.146 192 75 3 1 192 1 154 1.34e-33 129
Msa1355370 MtrunA17_Chr5g0446681 47.368 133 69 1 375 506 154 286 6.74e-29 115
Msa1355370 MtrunA17_Chr2g0286721 25.355 422 266 9 84 486 89 480 5.56e-33 131
Msa1355370 MtrunA17_Chr7g0273281 23.153 406 296 5 84 487 102 493 1.07e-32 130
Msa1355370 MtrunA17_Chr8g0376631 31.077 325 199 8 36 353 37 343 6.93e-32 129
Msa1355370 MtrunA17_Chr8g0376601 30.994 342 205 9 36 366 37 358 1.12e-31 128
Msa1355370 MtrunA17_Chr2g0290181 28.678 401 252 10 1 388 1 380 1.32e-31 128
Msa1355370 MtrunA17_Chr4g0066581 23.601 411 287 8 84 486 92 483 4.00e-31 125
Msa1355370 MtrunA17_Chr8g0376611 35.200 250 155 4 108 351 26 274 8.18e-31 125
Msa1355370 MtrunA17_Chr4g0004821 25.131 382 269 6 109 487 103 470 5.33e-30 122
Msa1355370 MtrunA17_Chr7g0228781 39.153 189 76 4 2 153 17 203 3.62e-29 114
Msa1355370 MtrunA17_Chr6g0486021 24.084 382 273 6 109 487 117 484 9.93e-26 110
Msa1355370 MtrunA17_Chr2g0290161 29.520 271 153 8 108 367 27 270 2.37e-22 100
Msa1355370 MtrunA17_Chr3g0121674 26.014 296 204 8 204 492 2 289 2.54e-20 91.7
Msa1355370 MtrunA17_Chr3g0146061 28.372 215 134 5 105 313 67 267 3.35e-18 88.2
Msa1355370 MtrunA17_Chr3g0146061 26.415 212 134 5 285 483 519 721 4.93e-12 68.6
Msa1355370 MtrunA17_Chr8g0370141 30.168 179 122 3 79 255 41 218 1.36e-17 84.7
Msa1355370 MtrunA17_Chr5g0434231 33.333 171 88 4 89 258 9 154 6.10e-17 78.2
Msa1355370 MtrunA17_Chr5g0407441 25.862 290 183 9 23 309 2 262 7.40e-17 84.0
Msa1355370 MtrunA17_Chr3g0144261 31.361 169 111 5 108 273 68 234 1.12e-15 80.1
Msa1355370 MtrunA17_Chr3g0144261 25.188 266 161 9 244 483 458 711 4.84e-13 71.6
Msa1355370 MtrunA17_Chr5g0419321 27.746 173 122 3 85 255 75 246 1.02e-14 77.0
Msa1355370 MtrunA17_Chr5g0404191 26.667 180 127 1 84 263 90 264 1.45e-14 74.3
Msa1355370 MtrunA17_Chr7g0273261 24.895 237 162 5 254 486 10 234 2.02e-14 73.6
Msa1355370 MtrunA17_Chr8g0370151 25.941 239 153 6 260 483 113 342 1.84e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355370 AT1G34580.1 58.449 503 205 3 1 500 1 502 0.0 618
Msa1355370 AT1G34580.2 57.965 452 187 2 52 500 1 452 0.0 555
Msa1355370 AT5G26340.1 48.819 508 250 7 1 503 1 503 1.79e-178 512
Msa1355370 AT1G11260.1 51.953 512 235 8 1 507 1 506 9.72e-178 510
Msa1355370 AT4G02050.2 49.400 500 246 5 1 497 1 496 6.07e-175 503
Msa1355370 AT4G02050.1 49.400 500 246 5 1 497 1 496 6.07e-175 503
Msa1355370 AT3G19940.1 49.505 505 250 5 1 503 1 502 2.73e-172 496
Msa1355370 AT3G19930.1 49.802 504 247 4 1 502 1 500 2.55e-171 493
Msa1355370 AT3G19930.2 49.802 504 247 4 1 502 1 500 2.55e-171 493
Msa1355370 AT1G50310.1 47.525 505 260 5 1 502 1 503 3.04e-167 483
Msa1355370 AT4G21480.1 50.102 489 240 4 16 502 14 500 1.07e-166 481
Msa1355370 AT5G23270.1 47.809 502 255 5 1 498 1 499 1.04e-163 474
Msa1355370 AT5G61520.1 45.639 493 257 6 18 503 17 505 5.73e-159 462
Msa1355370 AT1G77210.2 43.195 507 280 7 1 503 1 503 3.35e-152 444
Msa1355370 AT1G77210.1 43.195 507 280 7 1 503 1 503 3.35e-152 444
Msa1355370 AT5G26250.1 44.422 493 268 5 13 503 10 498 9.43e-149 436
Msa1355370 AT3G05960.1 44.400 500 272 5 10 507 6 501 1.85e-148 435
Msa1355370 AT5G61520.2 44.783 460 243 6 51 503 2 457 3.28e-143 420
Msa1355370 AT1G07340.1 43.173 498 274 7 7 500 5 497 8.54e-133 394
Msa1355370 AT1G50310.2 46.875 352 183 4 153 502 11 360 1.54e-114 343
Msa1355370 AT1G77210.3 40.793 353 203 5 153 503 6 354 1.20e-99 304
Msa1355370 AT2G16120.1 31.622 487 286 13 29 492 30 492 7.36e-60 206
Msa1355370 AT2G16130.1 31.034 493 281 13 29 492 30 492 2.19e-59 204
Msa1355370 AT3G18830.1 29.876 482 288 12 29 486 40 495 1.88e-58 202
Msa1355370 AT2G18480.1 30.573 471 278 12 39 486 36 480 3.39e-56 196
Msa1355370 AT4G36670.1 29.960 504 292 13 29 504 21 491 3.53e-56 195
Msa1355370 AT2G20780.1 27.083 480 308 15 22 489 51 500 7.46e-47 171
Msa1355370 AT2G20780.2 27.431 401 273 10 98 489 51 442 2.43e-45 166
Msa1355370 AT3G05160.1 27.176 471 304 6 20 486 16 451 1.20e-43 160
Msa1355370 AT3G05160.3 28.642 405 269 4 86 486 14 402 3.37e-43 158
Msa1355370 AT3G05160.2 28.642 405 269 4 86 486 14 402 3.37e-43 158
Msa1355370 AT5G16150.2 27.646 463 296 9 31 487 111 540 6.39e-43 160
Msa1355370 AT5G16150.1 27.646 463 296 9 31 487 111 540 6.39e-43 160
Msa1355370 AT5G16150.3 27.646 463 296 9 31 487 111 540 6.39e-43 160
Msa1355370 AT1G75220.1 26.733 404 287 3 84 486 88 483 1.49e-41 155
Msa1355370 AT5G27350.1 25.745 470 314 7 20 487 26 462 5.25e-41 154
Msa1355370 AT5G17010.1 28.041 485 292 12 26 486 48 499 7.80e-41 154
Msa1355370 AT5G17010.3 28.041 485 292 12 26 486 48 499 7.80e-41 154
Msa1355370 AT5G17010.4 28.041 485 292 12 26 486 48 499 7.80e-41 154
Msa1355370 AT3G05165.3 25.800 469 313 7 20 486 25 460 1.22e-40 152
Msa1355370 AT3G05165.2 25.800 469 313 7 20 486 25 460 1.22e-40 152
Msa1355370 AT3G05165.1 25.800 469 313 7 20 486 25 460 1.22e-40 152
Msa1355370 AT1G08900.5 26.585 410 275 6 84 486 23 413 1.41e-39 149
Msa1355370 AT1G08900.3 26.585 410 275 6 84 486 57 447 3.40e-39 148
Msa1355370 AT1G08900.1 26.585 410 275 6 84 486 65 455 4.37e-39 148
Msa1355370 AT1G08900.2 26.585 410 275 6 84 486 65 455 4.37e-39 148
Msa1355370 AT1G19450.1 26.303 403 290 2 84 486 89 484 3.39e-38 146
Msa1355370 AT5G59250.1 26.860 484 306 12 24 486 97 553 3.41e-38 147
Msa1355370 AT2G48020.2 26.536 407 283 6 84 488 68 460 3.42e-38 145
Msa1355370 AT2G48020.1 26.536 407 283 6 84 488 68 460 3.42e-38 145
Msa1355370 AT3G05400.1 25.743 404 288 5 84 487 66 457 9.18e-38 144
Msa1355370 AT2G43330.1 25.397 504 335 13 2 494 11 484 3.73e-37 144
Msa1355370 AT4G04750.1 27.525 396 263 8 98 486 90 468 9.48e-37 142
Msa1355370 AT4G04750.2 27.525 396 263 8 98 486 90 468 9.48e-37 142
Msa1355370 AT3G03090.1 28.025 471 296 14 33 486 55 499 1.06e-36 142
Msa1355370 AT4G04750.3 26.972 393 269 6 98 486 134 512 1.49e-36 142
Msa1355370 AT1G08930.1 24.307 469 320 7 20 486 53 488 2.18e-36 141
Msa1355370 AT1G08930.2 24.307 469 320 7 20 486 53 488 2.18e-36 141
Msa1355370 AT1G30220.1 31.322 348 207 8 36 376 39 361 2.30e-35 139
Msa1355370 AT3G05165.4 24.942 429 283 6 20 444 25 418 3.10e-35 137
Msa1355370 AT3G05165.5 24.942 429 283 6 20 444 25 418 3.10e-35 137
Msa1355370 AT3G05165.6 25.105 478 304 10 20 491 25 454 3.73e-35 138
Msa1355370 AT3G05400.2 25.743 404 268 6 84 487 66 437 9.88e-35 135
Msa1355370 AT1G05030.1 28.970 466 287 14 31 487 85 515 1.22e-34 137
Msa1355370 AT1G54730.2 24.672 458 310 7 31 486 38 462 1.68e-34 135
Msa1355370 AT5G27360.1 22.766 470 326 7 20 486 30 465 1.94e-34 135
Msa1355370 AT3G05155.1 24.299 428 302 9 64 486 45 455 2.11e-34 135
Msa1355370 AT1G08890.1 24.519 416 286 5 84 491 67 462 5.00e-34 134
Msa1355370 AT1G05030.2 29.496 417 268 11 80 487 64 463 5.62e-34 134
Msa1355370 AT5G27360.3 22.766 470 326 7 20 486 78 513 5.68e-34 135
Msa1355370 AT1G08900.4 26.075 372 249 6 84 448 65 417 4.65e-33 130
Msa1355370 AT1G79820.2 25.696 467 301 12 30 487 59 488 8.70e-33 131
Msa1355370 AT1G79820.1 25.696 467 301 12 30 487 59 488 8.70e-33 131
Msa1355370 AT4G04760.3 25.245 408 286 6 84 486 12 405 1.84e-32 129
Msa1355370 AT4G04760.1 25.245 408 286 6 84 486 71 464 4.43e-32 129
Msa1355370 AT5G27360.2 24.234 359 254 5 131 486 18 361 6.70e-32 126
Msa1355370 AT5G27360.5 24.234 359 254 5 131 486 18 361 6.70e-32 126
Msa1355370 AT3G05150.1 27.273 407 277 9 84 486 75 466 5.56e-31 125
Msa1355370 AT3G05150.3 27.273 407 277 9 84 486 75 466 5.56e-31 125
Msa1355370 AT3G05150.2 26.764 411 274 9 84 486 75 466 6.08e-31 125
Msa1355370 AT1G54730.5 23.904 456 295 7 31 486 38 441 9.21e-31 124
Msa1355370 AT4G04760.2 24.877 406 287 6 84 486 71 461 1.38e-30 124
Msa1355370 AT5G18840.1 26.630 368 225 9 136 486 136 475 1.57e-30 124
Msa1355370 AT1G54730.3 24.519 416 279 7 31 444 38 420 4.32e-30 122
Msa1355370 AT4G16480.2 28.367 349 222 8 36 374 38 368 6.45e-30 124
Msa1355370 AT4G16480.3 28.367 349 222 8 36 374 38 368 6.45e-30 124
Msa1355370 AT4G16480.1 28.367 349 222 8 36 374 38 368 6.45e-30 124
Msa1355370 AT1G67300.2 25.103 486 326 10 7 487 36 488 4.74e-29 120
Msa1355370 AT1G67300.1 25.304 494 314 12 7 487 36 487 1.09e-28 119
Msa1355370 AT1G67300.3 25.304 494 314 12 7 487 36 487 1.09e-28 119
Msa1355370 AT1G79820.4 25.243 412 267 10 30 435 59 435 3.86e-28 117
Msa1355370 AT1G67300.6 25.285 439 278 10 7 435 36 434 1.68e-27 115
Msa1355370 AT1G67300.7 25.285 439 278 10 7 435 36 434 1.68e-27 115
Msa1355370 AT1G54730.4 23.671 414 264 7 31 444 38 399 2.29e-26 111
Msa1355370 AT3G20460.1 23.291 395 291 5 92 486 101 483 8.47e-26 110
Msa1355370 AT1G67300.4 25.115 434 275 10 7 430 36 429 2.05e-25 108
Msa1355370 AT1G67300.5 25.115 434 275 10 7 430 36 429 2.05e-25 108
Msa1355370 AT1G08920.1 21.728 405 301 5 84 486 72 462 2.01e-23 103
Msa1355370 AT2G35740.1 25.439 342 225 8 36 365 37 360 2.05e-23 104
Msa1355370 AT1G54730.9 23.797 395 266 7 31 423 38 399 2.47e-23 102
Msa1355370 AT1G54730.7 23.797 395 266 7 31 423 38 399 2.47e-23 102
Msa1355370 AT1G08920.2 20.936 406 310 4 84 486 72 469 4.03e-23 102
Msa1355370 AT2G48020.4 25.000 296 212 4 84 377 68 355 1.00e-22 100
Msa1355370 AT5G27360.4 22.472 356 241 6 20 370 30 355 1.12e-22 100
Msa1355370 AT5G17010.2 24.370 476 247 13 33 486 52 436 2.64e-22 99.8
Msa1355370 AT1G54730.11 24.768 323 216 5 31 353 38 333 3.42e-22 98.2
Msa1355370 AT2G48020.3 24.815 270 195 3 84 353 68 329 1.60e-21 96.3
Msa1355370 AT1G54730.10 24.667 300 202 4 31 330 38 313 1.81e-21 95.9
Msa1355370 AT1G54730.6 24.667 300 202 4 31 330 38 313 1.81e-21 95.9
Msa1355370 AT3G05155.2 22.945 292 212 4 64 353 45 325 3.03e-21 95.1
Msa1355370 AT1G79820.3 23.011 465 268 11 30 487 59 440 3.74e-21 96.7
Msa1355370 AT1G54730.8 24.333 300 203 4 31 330 38 313 1.38e-20 94.4
Msa1355370 AT3G51490.1 29.528 254 155 9 24 273 3 236 2.44e-20 95.1
Msa1355370 AT3G51490.2 29.528 254 155 9 24 273 3 236 2.69e-20 95.1
Msa1355370 AT3G51490.2 25.847 236 156 6 260 483 486 714 4.16e-12 69.3
Msa1355370 AT1G08920.3 21.680 369 261 6 84 438 72 426 1.56e-19 91.7
Msa1355370 AT3G51490.3 31.548 168 110 5 109 273 21 186 2.15e-19 92.0
Msa1355370 AT3G51490.3 25.847 236 156 6 260 483 436 664 3.15e-12 69.7
Msa1355370 AT1G79820.5 23.641 368 208 10 127 487 77 378 1.63e-17 84.7
Msa1355370 AT4G35300.9 33.136 169 108 5 108 273 70 236 5.73e-17 84.7
Msa1355370 AT4G35300.9 27.442 215 128 6 285 483 508 710 6.45e-12 68.6
Msa1355370 AT4G35300.2 33.136 169 108 5 108 273 70 236 5.73e-17 84.7
Msa1355370 AT4G35300.2 27.442 215 128 6 285 483 508 710 6.45e-12 68.6
Msa1355370 AT4G35300.3 33.136 169 108 5 108 273 70 236 5.73e-17 84.7
Msa1355370 AT4G35300.3 27.442 215 128 6 285 483 508 710 6.45e-12 68.6
Msa1355370 AT4G35300.4 33.136 169 108 5 108 273 70 236 6.05e-17 84.7
Msa1355370 AT4G35300.4 27.442 215 128 6 285 483 518 720 6.01e-12 68.9
Msa1355370 AT4G35300.8 33.136 169 108 5 108 273 70 236 6.05e-17 84.7
Msa1355370 AT4G35300.8 27.442 215 128 6 285 483 518 720 6.01e-12 68.9
Msa1355370 AT4G35300.6 33.136 169 108 5 108 273 70 236 6.05e-17 84.7
Msa1355370 AT4G35300.6 27.442 215 128 6 285 483 518 720 6.01e-12 68.9
Msa1355370 AT4G35300.11 33.136 169 108 5 108 273 70 236 6.05e-17 84.7
Msa1355370 AT4G35300.11 27.442 215 128 6 285 483 518 720 6.01e-12 68.9
Msa1355370 AT4G35300.1 33.136 169 108 5 108 273 70 236 6.05e-17 84.7
Msa1355370 AT4G35300.1 27.442 215 128 6 285 483 518 720 6.01e-12 68.9
Msa1355370 AT4G35300.10 33.136 169 108 5 108 273 70 236 6.05e-17 84.7
Msa1355370 AT4G35300.10 27.442 215 128 6 285 483 518 720 6.01e-12 68.9
Msa1355370 AT4G35300.7 33.136 169 108 5 108 273 70 236 6.05e-17 84.7
Msa1355370 AT4G35300.7 27.442 215 128 6 285 483 518 720 6.01e-12 68.9
Msa1355370 AT1G20840.2 29.717 212 137 6 77 278 30 239 2.34e-16 82.8
Msa1355370 AT1G20840.1 29.717 212 137 6 77 278 30 239 2.34e-16 82.8
Msa1355370 AT4G35300.5 27.442 215 128 6 285 483 321 523 5.84e-12 68.6

Find 112 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGATTCTTGTTCGTTAC+TGG 0.128057 tig0014626:+87569 Msa1355370:CDS
CCCTGTAACTTGTTGGAAAA+AGG 0.149049 tig0014626:-87402 Msa1355370:intergenic
CTCAAAGCGCCTCGCCATTT+TGG 0.167493 tig0014626:-87020 Msa1355370:intergenic
TAATTAAGAACCTCTATATT+TGG 0.172485 tig0014626:+84953 Msa1355370:five_prime_UTR
CCTAACCTCTTTAGATCTTT+AGG 0.188314 tig0014626:+87449 Msa1355370:CDS
CAAGTTACTGCTACCAATTT+TGG 0.197138 tig0014626:+85009 Msa1355370:CDS
CCTTTAAAACCATATTAAAA+AGG 0.205010 tig0014626:+87342 Msa1355370:CDS
GAACCTCTATATTTGGAAAA+TGG 0.211269 tig0014626:+84960 Msa1355370:exon
TGTTTCTTTGCTGCGGGTTT+TGG 0.214772 tig0014626:+88235 Msa1355370:CDS
GGATATGACATCGGAATTTC+AGG 0.222818 tig0014626:+85096 Msa1355370:CDS
ATCTTGGGCCGTGTTCTTCT+TGG 0.226529 tig0014626:+85491 Msa1355370:CDS
TCCAGTGCTTCTTATATTTA+CGG 0.253516 tig0014626:-88305 Msa1355370:intergenic
TGTTAGTTTGCCACCAAAAT+TGG 0.286869 tig0014626:-85022 Msa1355370:intergenic
ATGTTATGCCACTTTAAGTT+TGG 0.295147 tig0014626:+88391 Msa1355370:CDS
CTCTTTAGATCTTTAGGTTT+GGG 0.298390 tig0014626:+87455 Msa1355370:CDS
ATCAAAAGGCAATGCAATAT+TGG 0.299239 tig0014626:+88198 Msa1355370:CDS
CGTTTATCCCTGTAACTTGT+TGG 0.300744 tig0014626:-87409 Msa1355370:intergenic
TGTTATGCCACTTTAAGTTT+GGG 0.315456 tig0014626:+88392 Msa1355370:CDS
GGAGTTGGTATAATCTTTGC+AGG 0.317632 tig0014626:+87065 Msa1355370:CDS
GCTGCCTTTCTAAGAATGTT+TGG 0.324491 tig0014626:-85260 Msa1355370:intergenic
AAATATTCCTATGCTTATCT+TGG 0.325511 tig0014626:+85475 Msa1355370:CDS
CCAGTGCTTCTTATATTTAC+GGG 0.327384 tig0014626:-88304 Msa1355370:intergenic
TTACTTTCTGCCATTCTACT+TGG 0.330088 tig0014626:+87491 Msa1355370:CDS
GGTGGTATTGTCTTCCTTGC+TGG 0.336236 tig0014626:+85428 Msa1355370:CDS
TATGGGGTAAACATTGGTTT+TGG 0.345672 tig0014626:+88515 Msa1355370:CDS
AGCAAAGCTACGACGATGTT+TGG 0.348265 tig0014626:+85383 Msa1355370:CDS
CTTGGACTTGCAGTTGTGCC+TGG 0.348351 tig0014626:+87137 Msa1355370:CDS
CGGAGAAACGTCATCATAAT+AGG 0.348722 tig0014626:+85407 Msa1355370:CDS
CTGAAGTTGCTCCACCAAAA+TGG 0.353581 tig0014626:+87006 Msa1355370:CDS
TCTAGTGTTATTGATCGATT+TGG 0.353688 tig0014626:+87545 Msa1355370:CDS
CCTCTTTAGATCTTTAGGTT+TGG 0.361445 tig0014626:+87454 Msa1355370:CDS
CTTGCTGGTGGTGCCATTAA+CGG 0.381192 tig0014626:+85443 Msa1355370:CDS
TAGAAAGGCAGCTGGTACTA+AGG 0.387687 tig0014626:+85271 Msa1355370:CDS
TCTTGGGCCGTGTTCTTCTT+GGG 0.389386 tig0014626:+85492 Msa1355370:CDS
TTTGCAGGTTGCATAAACTA+TGG 0.389689 tig0014626:+87080 Msa1355370:CDS
TGGAGTCAATGCACATCATA+TGG 0.390532 tig0014626:+88497 Msa1355370:CDS
CTGCCTTTCTAAGAATGTTT+GGG 0.391579 tig0014626:-85259 Msa1355370:intergenic
GGCTGGTGGAGGATTCTCTA+TGG 0.398898 tig0014626:+84981 Msa1355370:CDS
GAAGATTCTTGTTCGTTACT+GGG 0.405890 tig0014626:+87570 Msa1355370:CDS
GGCCGTGTTCTTCTTGGGTT+AGG 0.406430 tig0014626:+85497 Msa1355370:CDS
CTTCCCAAACATTCTTAGAA+AGG 0.408662 tig0014626:+85256 Msa1355370:CDS
GCAGTGGTAGCTGGTGTTCA+TGG 0.409202 tig0014626:+88163 Msa1355370:CDS
CGGTTTGTTAAAGGAGAAGA+TGG 0.426425 tig0014626:+88541 Msa1355370:CDS
ACATCTTCTCATTATCTAGC+TGG 0.429977 tig0014626:+85338 Msa1355370:CDS
ATTGTGCTGGCAGTGGTAGC+TGG 0.430655 tig0014626:+88154 Msa1355370:CDS
TTACTATGTTTCTTTGCTGC+GGG 0.441530 tig0014626:+88229 Msa1355370:CDS
GGAGACTAAAGGAATTGCTT+TGG 0.447213 tig0014626:+88477 Msa1355370:CDS
CCTAAAGATCTAAAGAGGTT+AGG 0.450908 tig0014626:-87449 Msa1355370:intergenic
ACCACGTTCGACTAAGCTGT+TGG 0.460799 tig0014626:-87201 Msa1355370:intergenic
TAACTCAGGTTGAATATCAA+TGG 0.460980 tig0014626:-87270 Msa1355370:intergenic
TGTTGCTGTGCATTTCATAA+TGG 0.463293 tig0014626:+88339 Msa1355370:CDS
CTCTATATTTGGAAAATGGC+TGG 0.465982 tig0014626:+84964 Msa1355370:exon
AATATTCCTATGCTTATCTT+GGG 0.479813 tig0014626:+85476 Msa1355370:CDS
GGAGTCAATGCACATCATAT+GGG 0.483226 tig0014626:+88498 Msa1355370:CDS
TCTCCATCCCCATGTGTGCT+TGG 0.484108 tig0014626:-87108 Msa1355370:intergenic
CCCGTAAATATAAGAAGCAC+TGG 0.502898 tig0014626:+88304 Msa1355370:CDS
TTTAACAACTCCAAGTAGAA+TGG 0.503093 tig0014626:-87501 Msa1355370:intergenic
AAAGCAATTCCTTTAGTCTC+CGG 0.505065 tig0014626:-88475 Msa1355370:intergenic
TATTATCATGTCTATATGCT+TGG 0.508798 tig0014626:+87595 Msa1355370:CDS
TTAATAAGTTCTTCTAACTC+AGG 0.509188 tig0014626:-87284 Msa1355370:intergenic
GGTACAAATGACATATCAAA+AGG 0.512295 tig0014626:+88184 Msa1355370:CDS
TGTTGGGCGTGTCAGTTATG+AGG 0.512619 tig0014626:-87184 Msa1355370:intergenic
TTTACTATGTTTCTTTGCTG+CGG 0.515334 tig0014626:+88228 Msa1355370:CDS
CCACGTTCGACTAAGCTGTT+GGG 0.516815 tig0014626:-87200 Msa1355370:intergenic
ACTGGATGCAGCAACTATGC+AGG 0.518672 tig0014626:-85061 Msa1355370:intergenic
TGGGGATGGAGACTATCTCT+TGG 0.519663 tig0014626:+87119 Msa1355370:CDS
CCAAACCTAAAGATCTAAAG+AGG 0.525169 tig0014626:-87454 Msa1355370:intergenic
ATTTGGAAAATGGCTGGTGG+AGG 0.530401 tig0014626:+84970 Msa1355370:exon
GTTATGCCACTTTAAGTTTG+GGG 0.535398 tig0014626:+88393 Msa1355370:CDS
AAAATGCCCCAAACTTAAAG+TGG 0.535919 tig0014626:-88399 Msa1355370:intergenic
AAGATTCTTGTTCGTTACTG+GGG 0.542844 tig0014626:+87571 Msa1355370:CDS
TGGATTTGTGTCGTCACTTG+TGG 0.544283 tig0014626:+85358 Msa1355370:CDS
ATGGCACTGCCAAGCACACA+TGG 0.546307 tig0014626:+87099 Msa1355370:CDS
TTGGTGGAGCAACTTCAGAT+AGG 0.546521 tig0014626:-87001 Msa1355370:intergenic
CCTGGAGCTGTAATTACCAT+TGG 0.547596 tig0014626:+87155 Msa1355370:CDS
TGCATAGTTGCTGCATCCAG+TGG 0.549828 tig0014626:+85063 Msa1355370:CDS
GTTCTTCTTGGGTTAGGCGT+CGG 0.551868 tig0014626:+85503 Msa1355370:CDS
CTGCCAAGCACACATGGGGA+TGG 0.554164 tig0014626:+87105 Msa1355370:CDS
GCTTGCGGTGTCCATTGTGC+TGG 0.554774 tig0014626:+88141 Msa1355370:intron
CCAATGGTAATTACAGCTCC+AGG 0.559410 tig0014626:-87155 Msa1355370:intergenic
GTTAAAGGAGAAGATGGAGA+AGG 0.565819 tig0014626:+88547 Msa1355370:CDS
ACATCATATGGGGTAAACAT+TGG 0.571808 tig0014626:+88509 Msa1355370:CDS
AACATTCTTAGAAAGGCAGC+TGG 0.576083 tig0014626:+85263 Msa1355370:CDS
AAGGGAATATAGACCTCACT+TGG 0.580367 tig0014626:+87361 Msa1355370:CDS
AGATTCTTGTTCGTTACTGG+GGG 0.587355 tig0014626:+87572 Msa1355370:CDS
GGTATTGTCTTCCTTGCTGG+TGG 0.587453 tig0014626:+85431 Msa1355370:CDS
CTGGAATTAGCCATGCTAGA+GGG 0.590701 tig0014626:-88270 Msa1355370:intergenic
AAGCTACGACGATGTTTGGT+CGG 0.592316 tig0014626:+85387 Msa1355370:CDS
ATATAGACCTCACTTGGTGA+TGG 0.602290 tig0014626:+87367 Msa1355370:CDS
AGTTATGAGGAAGGCACCAA+TGG 0.602973 tig0014626:-87171 Msa1355370:intergenic
ACACGGCCCAAGATAAGCAT+AGG 0.604244 tig0014626:-85482 Msa1355370:intergenic
TATCATGGAGCCCTCTAGCA+TGG 0.611303 tig0014626:+88260 Msa1355370:CDS
GCAAATGCCATCACCAAGTG+AGG 0.611968 tig0014626:-87374 Msa1355370:intergenic
GGTGTCCATTGTGCTGGCAG+TGG 0.616794 tig0014626:+88147 Msa1355370:CDS
TGGCACTGCCAAGCACACAT+GGG 0.622519 tig0014626:+87100 Msa1355370:CDS
AAAGCATTACATAAAATCAG+AGG 0.624019 tig0014626:+87242 Msa1355370:CDS
GGGCGTGTCAGTTATGAGGA+AGG 0.625101 tig0014626:-87180 Msa1355370:intergenic
CGCCTAACCCAAGAAGAACA+CGG 0.626241 tig0014626:-85499 Msa1355370:intergenic
CGTTAATGGCACCACCAGCA+AGG 0.629715 tig0014626:-85442 Msa1355370:intergenic
TATATTTGGAAAATGGCTGG+TGG 0.630651 tig0014626:+84967 Msa1355370:exon
CTCAGGTTGAATATCAATGG+AGG 0.632300 tig0014626:-87267 Msa1355370:intergenic
AGCTACCACTGCCAGCACAA+TGG 0.639024 tig0014626:-88152 Msa1355370:intergenic
GAGTCAATGCACATCATATG+GGG 0.640900 tig0014626:+88499 Msa1355370:CDS
CAATAACACTAGAAGAGATG+AGG 0.641663 tig0014626:-87535 Msa1355370:intergenic
GGCACTGCCAAGCACACATG+GGG 0.646594 tig0014626:+87101 Msa1355370:CDS
GCTGGTGGTGCCATTAACGG+AGG 0.647650 tig0014626:+85446 Msa1355370:CDS
GCAACTTCAGATAGGTACAA+TGG 0.649314 tig0014626:-86993 Msa1355370:intergenic
CCCAACAGCTTAGTCGAACG+TGG 0.653506 tig0014626:+87200 Msa1355370:CDS
AGAAACGTCATCATAATAGG+TGG 0.664664 tig0014626:+85410 Msa1355370:CDS
GTTGCTCCACCAAAATGGCG+AGG 0.676475 tig0014626:+87011 Msa1355370:CDS
TTTAAGAAATGGCTTCATGG+TGG 0.679695 tig0014626:-85228 Msa1355360:intergenic
GCTGGAATTAGCCATGCTAG+AGG 0.694505 tig0014626:-88271 Msa1355360:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAATAAGAGTATATAT+AGG - tig0014626:85691-85710 Msa1355370:intergenic 10.0%
!! TTAAAAAAACAAGATTAAAT+AGG - tig0014626:85796-85815 Msa1355370:intergenic 10.0%
!!! TTAAATCTAAACTTTAAAAT+AGG + tig0014626:85893-85912 Msa1355370:intron 10.0%
!!! TAAATCTAAACTTTAAAATA+GGG + tig0014626:85894-85913 Msa1355370:intron 10.0%
!! AAACAAAAAAATTCTCAAAA+GGG - tig0014626:85617-85636 Msa1355370:intergenic 15.0%
!! AAAACAAAAAAATTCTCAAA+AGG - tig0014626:85618-85637 Msa1355370:intergenic 15.0%
!!! GATTTTTTTGCTTATATTAT+GGG - tig0014626:85726-85745 Msa1355370:intergenic 15.0%
!!! TGATTTTTTTGCTTATATTA+TGG - tig0014626:85727-85746 Msa1355370:intergenic 15.0%
!! AAAAAATAAGATTAAATCTG+AGG - tig0014626:85832-85851 Msa1355370:intergenic 15.0%
!!! TTTTATCCTTAAAATTTGAT+GGG + tig0014626:85858-85877 Msa1355370:intron 15.0%
!!! TTTTTTTTGACAGATTAAAT+AGG - tig0014626:86056-86075 Msa1355370:intergenic 15.0%
!! AATCTGTCAAAAAAAAAATA+AGG + tig0014626:86060-86079 Msa1355370:intron 15.0%
!!! TTATAGTCAAATTTGTTTAA+GGG - tig0014626:86276-86295 Msa1355370:intergenic 15.0%
!! AATATTGTTCATAGTTTATA+TGG + tig0014626:86474-86493 Msa1355370:intron 15.0%
!! AAAAACCATAAAAAGATAAA+AGG + tig0014626:86767-86786 Msa1355370:intron 15.0%
!!! AATTTCCTTTTATCTTTTTA+TGG - tig0014626:86775-86794 Msa1355370:intergenic 15.0%
!!! TAATAAACTTTTTTTAAGGA+GGG - tig0014626:86860-86879 Msa1355370:intergenic 15.0%
!!! ATAATAAACTTTTTTTAAGG+AGG - tig0014626:86861-86880 Msa1355370:intergenic 15.0%
!!! GGAATAATAAACTTTTTTTA+AGG - tig0014626:86864-86883 Msa1355370:intergenic 15.0%
!! AATATGTCATCAAAATTTAT+AGG - tig0014626:86954-86973 Msa1355370:intergenic 15.0%
!!! CTTTTTAATATGGTTTTAAA+GGG - tig0014626:87344-87363 Msa1355370:intergenic 15.0%
!!! CTTTAAAACCATATTAAAAA+GGG + tig0014626:87343-87362 Msa1355370:CDS 15.0%
!! GAAAATTTATATCAATGAAA+GGG - tig0014626:87911-87930 Msa1355370:intergenic 15.0%
!! TGAAAATTTATATCAATGAA+AGG - tig0014626:87912-87931 Msa1355370:intergenic 15.0%
!!! CAATTATTCTTTTATTTTCA+TGG + tig0014626:87930-87949 Msa1355370:intron 15.0%
!!! ATTTTTAATAATTGTGAAAG+TGG + tig0014626:88011-88030 Msa1355370:intron 15.0%
!! TAATTAAGAACCTCTATATT+TGG + tig0014626:84953-84972 Msa1355370:five_prime_UTR 20.0%
!! TGAAATTAATGTCAAATTTC+AGG + tig0014626:85197-85216 Msa1355370:intron 20.0%
!!! CAATGGGTTTTAAATAAATT+TGG + tig0014626:85545-85564 Msa1355370:intron 20.0%
!!! GTCTTTTTTGCTTATATTTT+GGG - tig0014626:85763-85782 Msa1355370:intergenic 20.0%
!!! TGTCTTTTTTGCTTATATTT+TGG - tig0014626:85764-85783 Msa1355370:intergenic 20.0%
!!! CTTTTATCCTTAAAATTTGA+TGG + tig0014626:85857-85876 Msa1355370:intron 20.0%
!!! GTACTTATAACTTTAAAAAC+TGG + tig0014626:85916-85935 Msa1355370:intron 20.0%
!!! TGACAGATTAAAAGTTTTTA+AGG - tig0014626:85988-86007 Msa1355370:intergenic 20.0%
!!! CTTATAGTCAAATTTGTTTA+AGG - tig0014626:86277-86296 Msa1355370:intergenic 20.0%
!!! CTATAAGAATGTTATTTTGT+TGG + tig0014626:86290-86309 Msa1355370:intron 20.0%
!! GAATAACGTAATAAAAAAAG+CGG + tig0014626:86496-86515 Msa1355370:intron 20.0%
!! TAATAAAAAAAGCGGAAAAA+CGG + tig0014626:86504-86523 Msa1355370:intron 20.0%
!!! AAACTCTAGTTTAAGTATAA+AGG + tig0014626:86544-86563 Msa1355370:intron 20.0%
!! TATAATAGAATGTGATGTTT+AGG + tig0014626:86570-86589 Msa1355370:intron 20.0%
!! TATTCGCAAATTTATTTATG+TGG + tig0014626:86689-86708 Msa1355370:intron 20.0%
!!! AATAAACTTTTTTTAAGGAG+GGG - tig0014626:86859-86878 Msa1355370:intergenic 20.0%
!! ATTATTATTAGGGTTATGAT+AGG + tig0014626:86897-86916 Msa1355370:intron 20.0%
!! TTATTATTAGGGTTATGATA+GGG + tig0014626:86898-86917 Msa1355370:intron 20.0%
!!! GATTTTATGTAATGCTTTTT+TGG - tig0014626:87240-87259 Msa1355370:intergenic 20.0%
!!! CCTTTTTAATATGGTTTTAA+AGG - tig0014626:87345-87364 Msa1355370:intergenic 20.0%
!!! CCTTTAAAACCATATTAAAA+AGG + tig0014626:87342-87361 Msa1355370:CDS 20.0%
!!! TCTATATTCCCTTTTTAATA+TGG - tig0014626:87354-87373 Msa1355370:intergenic 20.0%
!! TTATTTATAATCAAGACAAG+AGG + tig0014626:88039-88058 Msa1355370:intron 20.0%
!! TATTTATAATCAAGACAAGA+GGG + tig0014626:88040-88059 Msa1355370:intron 20.0%
!!! TTTCATTATATTTTTCTTGC+CGG + tig0014626:88456-88475 Msa1355370:CDS 20.0%
! AATTAATGTCAAATTTCAGG+AGG + tig0014626:85200-85219 Msa1355370:intron 25.0%
!!! TTTTTTAAGAAATGGCTTCA+TGG - tig0014626:85234-85253 Msa1355370:intergenic 25.0%
!!! GGGAAGAATTTTTTAAGAAA+TGG - tig0014626:85242-85261 Msa1355370:intergenic 25.0%
! AAATATTCCTATGCTTATCT+TGG + tig0014626:85475-85494 Msa1355370:CDS 25.0%
! AATATTCCTATGCTTATCTT+GGG + tig0014626:85476-85495 Msa1355370:CDS 25.0%
! ACGATTTCCTAAATTTAGAA+CGG - tig0014626:85579-85598 Msa1355370:intergenic 25.0%
! TTCTAAATTTAGGAAATCGT+TGG + tig0014626:85579-85598 Msa1355370:intron 25.0%
!! TTTTTGCTTATATTATGGGA+CGG - tig0014626:85722-85741 Msa1355370:intergenic 25.0%
!! TTTTGACCCATCAAATTTTA+AGG - tig0014626:85867-85886 Msa1355370:intergenic 25.0%
! TACTTAAACTAGAGTTTAGA+CGG - tig0014626:86541-86560 Msa1355370:intergenic 25.0%
! TAGAGTAAAAAGTAGTTGTT+GGG - tig0014626:86671-86690 Msa1355370:intergenic 25.0%
! ATAGAGTAAAAAGTAGTTGT+TGG - tig0014626:86672-86691 Msa1355370:intergenic 25.0%
!!! TTTTGATGACATATTGCAAT+TGG + tig0014626:86959-86978 Msa1355370:intron 25.0%
!! AAAGCATTACATAAAATCAG+AGG + tig0014626:87242-87261 Msa1355370:CDS 25.0%
! TTAATAAGTTCTTCTAACTC+AGG - tig0014626:87287-87306 Msa1355370:intergenic 25.0%
! TATTATCATGTCTATATGCT+TGG + tig0014626:87595-87614 Msa1355370:CDS 25.0%
!!! AAATGTATTTAGGGCAATTT+TGG - tig0014626:87668-87687 Msa1355370:intergenic 25.0%
! CTCCTTAACAAATGTATTTA+GGG - tig0014626:87677-87696 Msa1355370:intergenic 25.0%
! ACTCCTTAACAAATGTATTT+AGG - tig0014626:87678-87697 Msa1355370:intergenic 25.0%
! TCCTTTATAAATACTCTATC+TGG + tig0014626:87813-87832 Msa1355370:intron 25.0%
!! TCCAGATAGAGTATTTATAA+AGG - tig0014626:87817-87836 Msa1355370:intergenic 25.0%
GAACCTCTATATTTGGAAAA+TGG + tig0014626:84960-84979 Msa1355370:exon 30.0%
! CTTCTTTTTGGATATGACAT+CGG + tig0014626:85087-85106 Msa1355370:CDS 30.0%
TCACTAATCAAGTAAGTCAA+TGG + tig0014626:85528-85547 Msa1355370:intron 30.0%
CACTAATCAAGTAAGTCAAT+GGG + tig0014626:85529-85548 Msa1355370:intron 30.0%
! TTCCTAAATTTAGAACGGAT+GGG - tig0014626:85574-85593 Msa1355370:intergenic 30.0%
! TTTCCTAAATTTAGAACGGA+TGG - tig0014626:85575-85594 Msa1355370:intergenic 30.0%
! GAGAGAGAATACATAGTTTT+TGG + tig0014626:86226-86245 Msa1355370:intron 30.0%
AGGTTATCCTTGAAGAATTA+CGG + tig0014626:86590-86609 Msa1355370:intron 30.0%
AAATTACCCGTAATTCTTCA+AGG - tig0014626:86600-86619 Msa1355370:intergenic 30.0%
ACTAATTAAATTAGCCGCAT+TGG + tig0014626:86628-86647 Msa1355370:intron 30.0%
TACTCTCAAATTTACCAATG+CGG - tig0014626:86645-86664 Msa1355370:intergenic 30.0%
AAATTAGTCACACTTCTTCA+CGG + tig0014626:86735-86754 Msa1355370:intron 30.0%
TGACATATTGCAATTGGAAA+AGG + tig0014626:86965-86984 Msa1355370:intron 30.0%
!! TAACTCAGGTTGAATATCAA+TGG - tig0014626:87273-87292 Msa1355370:intergenic 30.0%
! CTCTTTAGATCTTTAGGTTT+GGG + tig0014626:87455-87474 Msa1355370:CDS 30.0%
TTTAACAACTCCAAGTAGAA+TGG - tig0014626:87504-87523 Msa1355370:intergenic 30.0%
! TCTAGTGTTATTGATCGATT+TGG + tig0014626:87545-87564 Msa1355370:CDS 30.0%
! TGCCCTAAATACATTTGTTA+AGG + tig0014626:87672-87691 Msa1355370:intron 30.0%
GGTACAAATGACATATCAAA+AGG + tig0014626:88184-88203 Msa1355370:CDS 30.0%
ATCAAAAGGCAATGCAATAT+TGG + tig0014626:88198-88217 Msa1355370:CDS 30.0%
TTTACTATGTTTCTTTGCTG+CGG + tig0014626:88228-88247 Msa1355370:CDS 30.0%
TCCAGTGCTTCTTATATTTA+CGG - tig0014626:88308-88327 Msa1355370:intergenic 30.0%
!! ATGTTATGCCACTTTAAGTT+TGG + tig0014626:88391-88410 Msa1355370:CDS 30.0%
!! TGTTATGCCACTTTAAGTTT+GGG + tig0014626:88392-88411 Msa1355370:CDS 30.0%
!! ATTTTTGTTCTATGCTGGTT+GGG + tig0014626:88417-88436 Msa1355370:CDS 30.0%
!!! GTAAACATTGGTTTTGGTAT+CGG + tig0014626:88521-88540 Msa1355370:CDS 30.0%
!!! TTTTGGTATCGGTTTGTTAA+AGG + tig0014626:88532-88551 Msa1355370:CDS 30.0%
!! CAGCCATTTTCCAAATATAG+AGG - tig0014626:84966-84985 Msa1355370:intergenic 35.0%
CTCTATATTTGGAAAATGGC+TGG + tig0014626:84964-84983 Msa1355370:exon 35.0%
TATATTTGGAAAATGGCTGG+TGG + tig0014626:84967-84986 Msa1355370:exon 35.0%
! CAAGTTACTGCTACCAATTT+TGG + tig0014626:85009-85028 Msa1355370:CDS 35.0%
!! TGTTAGTTTGCCACCAAAAT+TGG - tig0014626:85025-85044 Msa1355370:intergenic 35.0%
CGATGTCATATCCAAAAAGA+AGG - tig0014626:85089-85108 Msa1355370:intergenic 35.0%
TTTAAGAAATGGCTTCATGG+TGG - tig0014626:85231-85250 Msa1355370:intergenic 35.0%
CTTCCCAAACATTCTTAGAA+AGG + tig0014626:85256-85275 Msa1355370:CDS 35.0%
! CTGCCTTTCTAAGAATGTTT+GGG - tig0014626:85262-85281 Msa1355370:intergenic 35.0%
ACATCTTCTCATTATCTAGC+TGG + tig0014626:85338-85357 Msa1355370:CDS 35.0%
AGAAACGTCATCATAATAGG+TGG + tig0014626:85410-85429 Msa1355370:CDS 35.0%
! ATTTTCAGAACCTCCGTTAA+TGG - tig0014626:85459-85478 Msa1355370:intergenic 35.0%
! TCCTAAATTTAGAACGGATG+GGG - tig0014626:85573-85592 Msa1355370:intergenic 35.0%
GGTTATCCTTGAAGAATTAC+GGG + tig0014626:86591-86610 Msa1355370:intron 35.0%
! TTATGATAGGGCACTAGTTA+AGG + tig0014626:86910-86929 Msa1355370:intron 35.0%
! ACAAGCTTCCCATTCTTTTT+GGG + tig0014626:87044-87063 Msa1355370:CDS 35.0%
TACCAACTCCCAAAAAGAAT+GGG - tig0014626:87055-87074 Msa1355370:intergenic 35.0%
ATACCAACTCCCAAAAAGAA+TGG - tig0014626:87056-87075 Msa1355370:intergenic 35.0%
TTTGCAGGTTGCATAAACTA+TGG + tig0014626:87080-87099 Msa1355370:CDS 35.0%
!! CTGTAACTTGTTGGAAAAAG+GGG - tig0014626:87403-87422 Msa1355370:intergenic 35.0%
!! CCTGTAACTTGTTGGAAAAA+GGG - tig0014626:87404-87423 Msa1355370:intergenic 35.0%
! CCTTTTTCCAACAAGTTACA+GGG + tig0014626:87402-87421 Msa1355370:CDS 35.0%
CCTAAAGATCTAAAGAGGTT+AGG - tig0014626:87452-87471 Msa1355370:intergenic 35.0%
CCTAACCTCTTTAGATCTTT+AGG + tig0014626:87449-87468 Msa1355370:CDS 35.0%
CCAAACCTAAAGATCTAAAG+AGG - tig0014626:87457-87476 Msa1355370:intergenic 35.0%
! CCTCTTTAGATCTTTAGGTT+TGG + tig0014626:87454-87473 Msa1355370:CDS 35.0%
TTACTTTCTGCCATTCTACT+TGG + tig0014626:87491-87510 Msa1355370:CDS 35.0%
CAATAACACTAGAAGAGATG+AGG - tig0014626:87538-87557 Msa1355370:intergenic 35.0%
GAAGATTCTTGTTCGTTACT+GGG + tig0014626:87570-87589 Msa1355370:CDS 35.0%
AAGATTCTTGTTCGTTACTG+GGG + tig0014626:87571-87590 Msa1355370:CDS 35.0%
!!! CTGGAAGTGCTTGTATTTTT+TGG + tig0014626:87832-87851 Msa1355370:intron 35.0%
TTACTATGTTTCTTTGCTGC+GGG + tig0014626:88229-88248 Msa1355370:CDS 35.0%
CCAGTGCTTCTTATATTTAC+GGG - tig0014626:88307-88326 Msa1355370:intergenic 35.0%
TGTTGCTGTGCATTTCATAA+TGG + tig0014626:88339-88358 Msa1355370:CDS 35.0%
!! GTTATGCCACTTTAAGTTTG+GGG + tig0014626:88393-88412 Msa1355370:CDS 35.0%
AAAATGCCCCAAACTTAAAG+TGG - tig0014626:88402-88421 Msa1355370:intergenic 35.0%
! CATTTTTGTTCTATGCTGGT+TGG + tig0014626:88416-88435 Msa1355370:CDS 35.0%
AAAGCAATTCCTTTAGTCTC+CGG - tig0014626:88478-88497 Msa1355370:intergenic 35.0%
ACATCATATGGGGTAAACAT+TGG + tig0014626:88509-88528 Msa1355370:CDS 35.0%
!!! TATGGGGTAAACATTGGTTT+TGG + tig0014626:88515-88534 Msa1355370:CDS 35.0%
! GTTACTGCTACCAATTTTGG+TGG + tig0014626:85012-85031 Msa1355370:CDS 40.0%
ATATCCAAAAAGAAGGCCAC+TGG - tig0014626:85082-85101 Msa1355370:intergenic 40.0%
GGATATGACATCGGAATTTC+AGG + tig0014626:85096-85115 Msa1355370:CDS 40.0%
! GCTGCCTTTCTAAGAATGTT+TGG - tig0014626:85263-85282 Msa1355370:intergenic 40.0%
AACATTCTTAGAAAGGCAGC+TGG + tig0014626:85263-85282 Msa1355370:CDS 40.0%
CGGAGAAACGTCATCATAAT+AGG + tig0014626:85407-85426 Msa1355370:CDS 40.0%
! ACCCCATCCGTTCTAAATTT+AGG + tig0014626:85569-85588 Msa1355370:intron 40.0%
TGCTTATATTATGGGACGGA+GGG - tig0014626:85718-85737 Msa1355370:intergenic 40.0%
TTGCTTATATTATGGGACGG+AGG - tig0014626:85719-85738 Msa1355370:intergenic 40.0%
AAAAAGCGGAAAAACGGACA+CGG + tig0014626:86510-86529 Msa1355370:intron 40.0%
GCAACTTCAGATAGGTACAA+TGG - tig0014626:86996-87015 Msa1355370:intergenic 40.0%
! CACAAGCTTCCCATTCTTTT+TGG + tig0014626:87043-87062 Msa1355370:CDS 40.0%
!! TTCCCATTCTTTTTGGGAGT+TGG + tig0014626:87050-87069 Msa1355370:CDS 40.0%
!! GGAGTTGGTATAATCTTTGC+AGG + tig0014626:87065-87084 Msa1355370:CDS 40.0%
!! CTCAGGTTGAATATCAATGG+AGG - tig0014626:87270-87289 Msa1355370:intergenic 40.0%
AAGGGAATATAGACCTCACT+TGG + tig0014626:87361-87380 Msa1355370:CDS 40.0%
! ATATAGACCTCACTTGGTGA+TGG + tig0014626:87367-87386 Msa1355370:CDS 40.0%
! CCCTTTTTCCAACAAGTTAC+AGG + tig0014626:87401-87420 Msa1355370:CDS 40.0%
!! CCCTGTAACTTGTTGGAAAA+AGG - tig0014626:87405-87424 Msa1355370:intergenic 40.0%
! CGTTTATCCCTGTAACTTGT+TGG - tig0014626:87412-87431 Msa1355370:intergenic 40.0%
CGAAGATTCTTGTTCGTTAC+TGG + tig0014626:87569-87588 Msa1355370:CDS 40.0%
AGATTCTTGTTCGTTACTGG+GGG + tig0014626:87572-87591 Msa1355370:CDS 40.0%
TATGAACTCCATGAAGCTTG+CGG + tig0014626:88126-88145 Msa1355370:intron 40.0%
TTTACGGGAAAAATCTCAGC+TGG - tig0014626:88292-88311 Msa1355370:intergenic 40.0%
! CCCGTAAATATAAGAAGCAC+TGG + tig0014626:88304-88323 Msa1355370:CDS 40.0%
! TTTTTCTTGCCGGAGACTAA+AGG + tig0014626:88466-88485 Msa1355370:CDS 40.0%
GGAGACTAAAGGAATTGCTT+TGG + tig0014626:88477-88496 Msa1355370:CDS 40.0%
TGGAGTCAATGCACATCATA+TGG + tig0014626:88497-88516 Msa1355370:CDS 40.0%
GGAGTCAATGCACATCATAT+GGG + tig0014626:88498-88517 Msa1355370:CDS 40.0%
GAGTCAATGCACATCATATG+GGG + tig0014626:88499-88518 Msa1355370:CDS 40.0%
!! CGGTTTGTTAAAGGAGAAGA+TGG + tig0014626:88541-88560 Msa1355370:CDS 40.0%
GTTAAAGGAGAAGATGGAGA+AGG + tig0014626:88547-88566 Msa1355370:CDS 40.0%
ATTTGGAAAATGGCTGGTGG+AGG + tig0014626:84970-84989 Msa1355370:exon 45.0%
TAGAAAGGCAGCTGGTACTA+AGG + tig0014626:85271-85290 Msa1355370:CDS 45.0%
TGGATTTGTGTCGTCACTTG+TGG + tig0014626:85358-85377 Msa1355370:CDS 45.0%
AGCAAAGCTACGACGATGTT+TGG + tig0014626:85383-85402 Msa1355370:CDS 45.0%
AAGCTACGACGATGTTTGGT+CGG + tig0014626:85387-85406 Msa1355370:CDS 45.0%
TTGGTGGAGCAACTTCAGAT+AGG - tig0014626:87004-87023 Msa1355370:intergenic 45.0%
CTGAAGTTGCTCCACCAAAA+TGG + tig0014626:87006-87025 Msa1355370:CDS 45.0%
CCAATGGTAATTACAGCTCC+AGG - tig0014626:87158-87177 Msa1355370:intergenic 45.0%
CCTGGAGCTGTAATTACCAT+TGG + tig0014626:87155-87174 Msa1355370:CDS 45.0%
!! AGTTATGAGGAAGGCACCAA+TGG - tig0014626:87174-87193 Msa1355370:intergenic 45.0%
! TGTTTCTTTGCTGCGGGTTT+TGG + tig0014626:88235-88254 Msa1355370:CDS 45.0%
!!! CTGCGGGTTTTGGTTTATCA+TGG + tig0014626:88245-88264 Msa1355370:CDS 45.0%
CTGGAATTAGCCATGCTAGA+GGG - tig0014626:88273-88292 Msa1355370:intergenic 45.0%
!! GGGGCATTTTTGTTCTATGC+TGG + tig0014626:88412-88431 Msa1355370:CDS 45.0%
!! AAAGAAATAATTAATATAAT+TGG - tig0014626:85667-85686 Msa1355370:intergenic 5.0%
!! ATAATAATACAATAATTATA+AGG - tig0014626:86885-86904 Msa1355370:intergenic 5.0%
!! ATAATTATTGTATTATTATT+AGG + tig0014626:86886-86905 Msa1355370:intron 5.0%
!! TAATTATTGTATTATTATTA+GGG + tig0014626:86887-86906 Msa1355370:intron 5.0%
ACTGGATGCAGCAACTATGC+AGG - tig0014626:85064-85083 Msa1355370:intergenic 50.0%
TGCATAGTTGCTGCATCCAG+TGG + tig0014626:85063-85082 Msa1355370:CDS 50.0%
! GCATCCAGTGGCCTTCTTTT+TGG + tig0014626:85075-85094 Msa1355370:CDS 50.0%
GGTGGTATTGTCTTCCTTGC+TGG + tig0014626:85428-85447 Msa1355370:CDS 50.0%
GGTATTGTCTTCCTTGCTGG+TGG + tig0014626:85431-85450 Msa1355370:CDS 50.0%
!! CTTGCTGGTGGTGCCATTAA+CGG + tig0014626:85443-85462 Msa1355370:CDS 50.0%
ACACGGCCCAAGATAAGCAT+AGG - tig0014626:85485-85504 Msa1355370:intergenic 50.0%
ATCTTGGGCCGTGTTCTTCT+TGG + tig0014626:85491-85510 Msa1355370:CDS 50.0%
TCTTGGGCCGTGTTCTTCTT+GGG + tig0014626:85492-85511 Msa1355370:CDS 50.0%
CGCCTAACCCAAGAAGAACA+CGG - tig0014626:85502-85521 Msa1355370:intergenic 50.0%
! GTTCTTCTTGGGTTAGGCGT+CGG + tig0014626:85503-85522 Msa1355370:CDS 50.0%
TGGGGATGGAGACTATCTCT+TGG + tig0014626:87119-87138 Msa1355370:CDS 50.0%
TGTTGGGCGTGTCAGTTATG+AGG - tig0014626:87187-87206 Msa1355370:intergenic 50.0%
CCACGTTCGACTAAGCTGTT+GGG - tig0014626:87203-87222 Msa1355370:intergenic 50.0%
ACCACGTTCGACTAAGCTGT+TGG - tig0014626:87204-87223 Msa1355370:intergenic 50.0%
GCAAATGCCATCACCAAGTG+AGG - tig0014626:87377-87396 Msa1355370:intergenic 50.0%
AATGGACACCGCAAGCTTCA+TGG - tig0014626:88137-88156 Msa1355370:intergenic 50.0%
TATCATGGAGCCCTCTAGCA+TGG + tig0014626:88260-88279 Msa1355370:CDS 50.0%
GCTGGAATTAGCCATGCTAG+AGG - tig0014626:88274-88293 Msa1355370:intergenic 50.0%
GGCTGGTGGAGGATTCTCTA+TGG + tig0014626:84981-85000 Msa1355370:CDS 55.0%
CGTTAATGGCACCACCAGCA+AGG - tig0014626:85445-85464 Msa1355370:intergenic 55.0%
GGCCGTGTTCTTCTTGGGTT+AGG + tig0014626:85497-85516 Msa1355370:CDS 55.0%
GTTGCTCCACCAAAATGGCG+AGG + tig0014626:87011-87030 Msa1355370:CDS 55.0%
!! AAAGCGCCTCGCCATTTTGG+TGG - tig0014626:87020-87039 Msa1355370:intergenic 55.0%
!! CTCAAAGCGCCTCGCCATTT+TGG - tig0014626:87023-87042 Msa1355370:intergenic 55.0%
ATGGCACTGCCAAGCACACA+TGG + tig0014626:87099-87118 Msa1355370:CDS 55.0%
TGGCACTGCCAAGCACACAT+GGG + tig0014626:87100-87119 Msa1355370:CDS 55.0%
TCTCCATCCCCATGTGTGCT+TGG - tig0014626:87111-87130 Msa1355370:intergenic 55.0%
CTTGGACTTGCAGTTGTGCC+TGG + tig0014626:87137-87156 Msa1355370:CDS 55.0%
GGGCGTGTCAGTTATGAGGA+AGG - tig0014626:87183-87202 Msa1355370:intergenic 55.0%
CCCAACAGCTTAGTCGAACG+TGG + tig0014626:87200-87219 Msa1355370:CDS 55.0%
AGCTACCACTGCCAGCACAA+TGG - tig0014626:88155-88174 Msa1355370:intergenic 55.0%
! ATTGTGCTGGCAGTGGTAGC+TGG + tig0014626:88154-88173 Msa1355370:CDS 55.0%
GCAGTGGTAGCTGGTGTTCA+TGG + tig0014626:88163-88182 Msa1355370:CDS 55.0%
!! GCTGGTGGTGCCATTAACGG+AGG + tig0014626:85446-85465 Msa1355370:CDS 60.0%
GGCACTGCCAAGCACACATG+GGG + tig0014626:87101-87120 Msa1355370:CDS 60.0%
CTGCCAAGCACACATGGGGA+TGG + tig0014626:87105-87124 Msa1355370:CDS 60.0%
GCTTGCGGTGTCCATTGTGC+TGG + tig0014626:88141-88160 Msa1355370:intron 60.0%
! GGTGTCCATTGTGCTGGCAG+TGG + tig0014626:88147-88166 Msa1355370:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0014626 gene 84917 88582 84917 ID=Msa1355370;Name=Msa1355370
tig0014626 mRNA 84917 88582 84917 ID=Msa1355370-mRNA-1;Parent=Msa1355370;Name=Msa1355370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62|0.66|0.25|1|1|1|4|0|509
tig0014626 exon 84917 85117 84917 ID=Msa1355370-mRNA-1:exon:9424;Parent=Msa1355370-mRNA-1
tig0014626 exon 85219 85538 85219 ID=Msa1355370-mRNA-1:exon:9425;Parent=Msa1355370-mRNA-1
tig0014626 exon 86987 87616 86987 ID=Msa1355370-mRNA-1:exon:9426;Parent=Msa1355370-mRNA-1
tig0014626 exon 88142 88582 88142 ID=Msa1355370-mRNA-1:exon:9427;Parent=Msa1355370-mRNA-1
tig0014626 five_prime_UTR 84917 84978 84917 ID=Msa1355370-mRNA-1:five_prime_utr;Parent=Msa1355370-mRNA-1
tig0014626 CDS 84979 85117 84979 ID=Msa1355370-mRNA-1:cds;Parent=Msa1355370-mRNA-1
tig0014626 CDS 85219 85538 85219 ID=Msa1355370-mRNA-1:cds;Parent=Msa1355370-mRNA-1
tig0014626 CDS 86987 87616 86987 ID=Msa1355370-mRNA-1:cds;Parent=Msa1355370-mRNA-1
tig0014626 CDS 88142 88582 88142 ID=Msa1355370-mRNA-1:cds;Parent=Msa1355370-mRNA-1
Gene Sequence

>Msa1355370

ATGGCTGGTGGAGGATTCTCTATGGATACACAAGTTACTGCTACCAATTTTGGTGGCAAACTAACACTCTCAATCATCATTTCCTGCATAGTTGCTGCATCCAGTGGCCTTCTTTTTGGATATGACATCGGAATTTCAGGAGGTGTCACCACCATGAAGCCATTTCTTAAAAAATTCTTCCCAAACATTCTTAGAAAGGCAGCTGGTACTAAGGTGAACATGTATTGTGTGTATGATAGTCAAATATTGACATTATTCACATCTTCTCATTATCTAGCTGGATTTGTGTCGTCACTTGTGGCTAGCAAAGCTACGACGATGTTTGGTCGGAGAAACGTCATCATAATAGGTGGTATTGTCTTCCTTGCTGGTGGTGCCATTAACGGAGGTTCTGAAAATATTCCTATGCTTATCTTGGGCCGTGTTCTTCTTGGGTTAGGCGTCGGTTTCACTAATCAAGCTGCACCATTGTACCTATCTGAAGTTGCTCCACCAAAATGGCGAGGCGCTTTGAGCACAAGCTTCCCATTCTTTTTGGGAGTTGGTATAATCTTTGCAGGTTGCATAAACTATGGCACTGCCAAGCACACATGGGGATGGAGACTATCTCTTGGACTTGCAGTTGTGCCTGGAGCTGTAATTACCATTGGTGCCTTCCTCATAACTGACACGCCCAACAGCTTAGTCGAACGTGGTAAGATAGAGCAAGCCAAAAAAGCATTACATAAAATCAGAGGATCCTCCATTGATATTCAACCTGAGTTAGAAGAACTTATTAAGTCAACAAAAATTGCAAAATCAGTGCAGCAAGAACCCTTTAAAACCATATTAAAAAGGGAATATAGACCTCACTTGGTGATGGCATTTGCAATCCCCTTTTTCCAACAAGTTACAGGGATAAACGTAGTCACTTTCTATTCACCTAACCTCTTTAGATCTTTAGGTTTGGGACACAATGCTGCTTTACTTTCTGCCATTCTACTTGGAGTTGTTAAACTTGCATCTATCCTCATCTCTTCTAGTGTTATTGATCGATTTGGTCGAAGATTCTTGTTCGTTACTGGGGGTATTATCATGTCTATATGCTTGCTTGCGGTGTCCATTGTGCTGGCAGTGGTAGCTGGTGTTCATGGTACAAATGACATATCAAAAGGCAATGCAATATTGGTATTGATTTTACTATGTTTCTTTGCTGCGGGTTTTGGTTTATCATGGAGCCCTCTAGCATGGCTAATTCCAGCTGAGATTTTTCCCGTAAATATAAGAAGCACTGGACAAAGCATAGCTGTTGCTGTGCATTTCATAATGGAATTTGTGTTATCGCAAACATTCTTGACTATGTTATGCCACTTTAAGTTTGGGGCATTTTTGTTCTATGCTGGTTGGGTTGTTGTGATGACTCTTTTCATTATATTTTTCTTGCCGGAGACTAAAGGAATTGCTTTGGAGTCAATGCACATCATATGGGGTAAACATTGGTTTTGGTATCGGTTTGTTAAAGGAGAAGATGGAGAAGGAAATCGTCCATGA
Protein sequence

>Msa1355370

MAGGGFSMDTQVTATNFGGKLTLSIIISCIVAASSGLLFGYDIGISGGVTTMKPFLKKFFPNILRKAAGTKVNMYCVYDSQILTLFTSSHYLAGFVSSLVASKATTMFGRRNVIIIGGIVFLAGGAINGGSENIPMLILGRVLLGLGVGFTNQAAPLYLSEVAPPKWRGALSTSFPFFLGVGIIFAGCINYGTAKHTWGWRLSLGLAVVPGAVITIGAFLITDTPNSLVERGKIEQAKKALHKIRGSSIDIQPELEELIKSTKIAKSVQQEPFKTILKREYRPHLVMAFAIPFFQQVTGINVVTFYSPNLFRSLGLGHNAALLSAILLGVVKLASILISSSVIDRFGRRFLFVTGGIIMSICLLAVSIVLAVVAGVHGTNDISKGNAILVLILLCFFAAGFGLSWSPLAWLIPAEIFPVNIRSTGQSIAVAVHFIMEFVLSQTFLTMLCHFKFGAFLFYAGWVVVMTLFIIFFLPETKGIALESMHIIWGKHWFWYRFVKGEDGEGNRP*