AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0418190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418190 MtrunA17_Chr3g0115781 91.749 509 42 0 1 509 1 509 0.0 950
Msa0418190 MtrunA17_Chr3g0115741 80.196 510 100 1 1 509 1 510 0.0 837
Msa0418190 MtrunA17_Chr3g0115751 78.125 512 109 1 1 509 1 512 0.0 822
Msa0418190 MtrunA17_Chr3g0115721 75.246 509 124 1 1 509 1 507 0.0 801
Msa0418190 MtrunA17_Chr3g0115731 70.138 509 115 5 1 502 1 479 0.0 710
Msa0418190 MtrunA17_Chr3g0115711 65.469 501 170 2 1 501 1 498 0.0 696
Msa0418190 MtrunA17_Chr3g0078971 52.621 496 226 7 17 508 15 505 0.0 538
Msa0418190 MtrunA17_Chr3g0078991 52.883 503 229 6 10 507 8 507 0.0 530
Msa0418190 MtrunA17_Chr5g0394341 49.194 496 242 7 16 505 13 504 2.59e-179 513
Msa0418190 MtrunA17_Chr4g0065311 49.590 488 241 4 11 497 7 490 2.40e-178 510
Msa0418190 MtrunA17_Chr5g0445601 51.004 498 237 5 1 495 1 494 2.88e-173 498
Msa0418190 MtrunA17_Chr7g0257631 51.004 498 237 5 1 495 35 528 3.10e-172 496
Msa0418190 MtrunA17_Chr4g0065324 48.682 493 247 5 4 495 9 496 8.72e-170 489
Msa0418190 MtrunA17_Chr5g0420841 48.988 494 245 5 15 503 11 502 3.74e-169 487
Msa0418190 MtrunA17_Chr5g0437021 48.682 493 246 4 12 499 7 497 8.90e-167 481
Msa0418190 MtrunA17_Chr5g0417611 48.538 513 255 6 1 508 1 509 3.00e-165 478
Msa0418190 MtrunA17_Chr1g0164851 48.354 486 247 3 16 499 14 497 6.55e-164 475
Msa0418190 MtrunA17_Chr1g0164871 48.148 486 248 3 16 499 14 497 7.11e-164 474
Msa0418190 MtrunA17_Chr1g0205691 47.793 521 253 10 1 509 1 514 4.04e-163 473
Msa0418190 MtrunA17_Chr3g0128081 48.828 512 252 6 1 507 1 507 6.83e-163 471
Msa0418190 MtrunA17_Chr4g0048411 50.605 496 238 6 16 506 14 507 2.36e-160 465
Msa0418190 MtrunA17_Chr8g0390261 47.358 492 250 7 20 508 21 506 1.61e-159 463
Msa0418190 MtrunA17_Chr3g0085971 47.082 497 256 5 14 505 10 504 3.41e-159 462
Msa0418190 MtrunA17_Chr1g0205681 44.246 504 271 7 1 499 1 499 1.13e-157 457
Msa0418190 MtrunA17_Chr1g0205671 44.841 504 267 8 1 499 1 498 4.09e-157 456
Msa0418190 MtrunA17_Chr6g0486681 45.168 507 270 7 1 503 1 503 2.79e-156 454
Msa0418190 MtrunA17_Chr6g0486671 45.168 507 270 7 1 503 1 503 2.79e-156 454
Msa0418190 MtrunA17_Chr8g0390141 46.154 494 258 8 20 509 21 510 1.66e-155 453
Msa0418190 MtrunA17_Chr4g0048051 50.202 496 240 6 16 507 14 506 2.60e-149 437
Msa0418190 MtrunA17_Chr3g0128171 47.903 453 228 5 52 498 1 451 3.74e-144 422
Msa0418190 MtrunA17_Chr3g0078791 47.368 437 205 5 73 506 17 431 7.80e-138 405
Msa0418190 MtrunA17_Chr3g0115771 61.661 313 75 4 152 463 5 273 1.60e-121 357
Msa0418190 MtrunA17_Chr4g0065351 48.246 342 172 4 162 502 1 338 1.39e-110 332
Msa0418190 MtrunA17_Chr4g0036021 31.417 487 286 10 29 493 31 491 6.80e-62 211
Msa0418190 MtrunA17_Chr6g0485661 29.565 460 292 9 30 479 63 500 3.26e-61 209
Msa0418190 MtrunA17_Chr4g0034681 30.123 488 292 12 29 493 34 495 6.24e-61 208
Msa0418190 MtrunA17_Chr3g0144361 30.328 488 289 13 29 491 32 493 4.38e-58 201
Msa0418190 MtrunA17_Chr8g0373531 32.477 428 253 8 92 492 67 485 5.90e-58 200
Msa0418190 MtrunA17_Chr3g0115761 86.364 110 15 0 52 161 1 110 4.29e-57 186
Msa0418190 MtrunA17_Chr2g0282031 30.042 476 293 14 26 489 53 500 1.64e-54 191
Msa0418190 MtrunA17_Chr8g0390521 26.316 494 329 8 8 489 1 471 6.21e-54 189
Msa0418190 MtrunA17_Chr5g0432581 27.756 508 320 10 8 492 2 485 3.20e-51 182
Msa0418190 MtrunA17_Chr4g0021771 26.273 491 306 13 22 492 51 505 4.93e-51 182
Msa0418190 MtrunA17_Chr4g0039651 28.033 478 301 12 26 486 46 497 4.78e-47 171
Msa0418190 MtrunA17_Chr6g0457781 28.078 463 292 9 31 486 111 539 4.58e-45 166
Msa0418190 MtrunA17_Chr4g0065341 48.667 150 77 0 4 153 6 155 4.02e-44 153
Msa0418190 MtrunA17_Chr7g0250881 27.549 461 297 10 31 486 71 499 1.27e-43 161
Msa0418190 MtrunA17_Chr8g0373181 27.047 403 287 2 84 486 87 482 5.02e-43 159
Msa0418190 MtrunA17_Chr1g0213611 25.773 485 310 12 27 492 78 531 3.68e-40 152
Msa0418190 MtrunA17_Chr7g0214451 27.158 475 302 14 31 492 39 482 6.37e-40 151
Msa0418190 MtrunA17_Chr8g0373191 27.747 364 244 5 129 486 104 454 9.28e-40 149
Msa0418190 MtrunA17_Chr1g0213631 26.650 394 270 7 108 492 52 435 1.57e-38 146
Msa0418190 MtrunA17_Chr5g0403831 26.603 421 278 9 97 492 84 498 1.84e-38 147
Msa0418190 MtrunA17_Chr4g0032021 27.273 484 304 12 24 486 95 551 7.64e-38 146
Msa0418190 MtrunA17_Chr7g0259471 26.168 428 290 9 62 486 66 470 1.21e-37 144
Msa0418190 MtrunA17_Chr1g0155221 24.390 410 290 4 84 486 89 485 4.34e-35 137
Msa0418190 MtrunA17_Chr3g0119401 27.706 462 299 12 30 486 98 529 3.69e-34 135
Msa0418190 MtrunA17_Chr2g0303731 30.588 340 209 8 36 366 37 358 5.81e-34 135
Msa0418190 MtrunA17_Chr7g0259221 26.601 406 280 7 84 486 82 472 6.36e-34 134
Msa0418190 MtrunA17_Chr2g0286721 25.542 415 274 8 84 486 89 480 7.10e-34 134
Msa0418190 MtrunA17_Chr7g0273281 23.645 406 294 5 84 487 102 493 8.96e-34 134
Msa0418190 MtrunA17_Chr2g0303701 31.361 338 208 8 36 367 37 356 9.32e-34 134
Msa0418190 MtrunA17_Chr5g0446681 40.625 192 76 3 1 192 1 154 5.97e-33 127
Msa0418190 MtrunA17_Chr5g0446681 48.120 133 68 1 375 506 154 286 1.92e-29 117
Msa0418190 MtrunA17_Chr4g0066581 24.088 411 285 8 84 486 92 483 3.55e-32 129
Msa0418190 MtrunA17_Chr8g0376631 31.077 325 199 8 36 353 37 343 4.08e-32 129
Msa0418190 MtrunA17_Chr8g0376601 30.994 342 205 9 36 366 37 358 7.15e-32 129
Msa0418190 MtrunA17_Chr4g0004821 25.597 461 309 10 30 487 41 470 1.16e-31 127
Msa0418190 MtrunA17_Chr2g0290181 28.678 401 252 10 1 388 1 380 1.33e-31 128
Msa0418190 MtrunA17_Chr8g0376611 35.200 250 155 4 108 351 26 274 1.12e-30 124
Msa0418190 MtrunA17_Chr7g0228781 39.153 189 76 4 2 153 17 203 4.79e-29 114
Msa0418190 MtrunA17_Chr6g0486021 23.822 382 274 6 109 487 117 484 1.63e-25 109
Msa0418190 MtrunA17_Chr2g0290161 29.520 271 153 8 108 367 27 270 2.64e-22 99.8
Msa0418190 MtrunA17_Chr3g0121674 23.649 296 211 6 204 492 2 289 1.35e-20 92.4
Msa0418190 MtrunA17_Chr3g0146061 28.372 215 134 5 105 313 67 267 2.78e-18 88.2
Msa0418190 MtrunA17_Chr3g0146061 25.943 212 135 5 285 483 519 721 1.22e-11 67.4
Msa0418190 MtrunA17_Chr8g0370141 30.168 179 122 3 79 255 41 218 1.14e-17 85.1
Msa0418190 MtrunA17_Chr5g0434231 33.333 171 88 4 89 258 9 154 5.65e-17 78.2
Msa0418190 MtrunA17_Chr5g0407441 25.862 290 183 9 23 309 2 262 6.78e-17 84.0
Msa0418190 MtrunA17_Chr3g0144261 31.361 169 111 5 108 273 68 234 1.06e-15 80.1
Msa0418190 MtrunA17_Chr3g0144261 24.812 266 162 9 244 483 458 711 1.12e-12 70.5
Msa0418190 MtrunA17_Chr5g0419321 27.746 173 122 3 85 255 75 246 4.75e-15 78.2
Msa0418190 MtrunA17_Chr7g0273261 25.316 237 161 5 254 486 10 234 6.26e-15 74.7
Msa0418190 MtrunA17_Chr5g0404191 26.667 180 127 1 84 263 90 264 1.61e-14 74.3
Msa0418190 MtrunA17_Chr8g0370151 25.316 237 157 5 260 483 113 342 1.26e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418190 AT1G34580.1 58.449 503 205 3 1 500 1 502 0.0 616
Msa0418190 AT1G34580.2 57.965 452 187 2 52 500 1 452 0.0 553
Msa0418190 AT5G26340.1 49.213 508 248 7 1 503 1 503 9.23e-180 515
Msa0418190 AT1G11260.1 52.344 512 233 8 1 507 1 506 1.00e-177 510
Msa0418190 AT4G02050.2 49.400 500 246 5 1 497 1 496 3.76e-175 503
Msa0418190 AT4G02050.1 49.400 500 246 5 1 497 1 496 3.76e-175 503
Msa0418190 AT3G19940.1 49.703 505 249 5 1 503 1 502 4.79e-173 498
Msa0418190 AT3G19930.1 50.198 504 245 4 1 502 1 500 1.59e-172 496
Msa0418190 AT3G19930.2 50.198 504 245 4 1 502 1 500 1.59e-172 496
Msa0418190 AT1G50310.1 47.723 505 259 5 1 502 1 503 2.77e-168 486
Msa0418190 AT5G23270.1 48.406 502 252 5 1 498 1 499 5.36e-166 480
Msa0418190 AT4G21480.1 50.102 489 240 4 16 502 14 500 5.91e-166 479
Msa0418190 AT5G61520.1 45.842 493 256 6 18 503 17 505 3.71e-159 462
Msa0418190 AT1G77210.2 43.393 507 279 7 1 503 1 503 4.59e-153 446
Msa0418190 AT1G77210.1 43.393 507 279 7 1 503 1 503 4.59e-153 446
Msa0418190 AT5G26250.1 44.625 493 267 5 13 503 10 498 7.67e-149 436
Msa0418190 AT3G05960.1 44.600 500 271 5 10 507 6 501 1.17e-148 435
Msa0418190 AT5G61520.2 45.000 460 242 6 51 503 2 457 2.24e-143 420
Msa0418190 AT1G07340.1 43.373 498 273 7 7 500 5 497 4.60e-133 395
Msa0418190 AT1G50310.2 47.159 352 182 4 153 502 11 360 5.64e-115 344
Msa0418190 AT1G77210.3 40.793 353 203 5 153 503 6 354 5.74e-100 305
Msa0418190 AT2G16120.1 31.211 487 288 13 29 492 30 492 2.92e-60 207
Msa0418190 AT2G16130.1 30.832 493 282 13 29 492 30 492 1.37e-59 205
Msa0418190 AT3G18830.1 30.083 482 287 12 29 486 40 495 4.20e-59 204
Msa0418190 AT2G18480.1 30.932 472 275 12 39 486 36 480 2.86e-57 199
Msa0418190 AT4G36670.1 30.297 505 289 14 29 504 21 491 8.62e-57 197
Msa0418190 AT2G20780.1 27.083 480 308 15 22 489 51 500 3.95e-47 172
Msa0418190 AT2G20780.2 27.431 401 273 10 98 489 51 442 1.19e-45 166
Msa0418190 AT3G05160.1 26.964 471 305 6 20 486 16 451 2.26e-44 162
Msa0418190 AT3G05160.3 28.395 405 270 4 86 486 14 402 4.05e-44 161
Msa0418190 AT3G05160.2 28.395 405 270 4 86 486 14 402 4.05e-44 161
Msa0418190 AT5G16150.2 27.802 464 294 9 31 487 111 540 1.11e-43 162
Msa0418190 AT5G16150.1 27.802 464 294 9 31 487 111 540 1.11e-43 162
Msa0418190 AT5G16150.3 27.802 464 294 9 31 487 111 540 1.11e-43 162
Msa0418190 AT1G75220.1 26.980 404 286 3 84 486 88 483 4.12e-42 157
Msa0418190 AT5G27350.1 26.170 470 312 7 20 487 26 462 4.45e-42 157
Msa0418190 AT3G05165.3 26.226 469 311 7 20 486 25 460 1.05e-41 155
Msa0418190 AT3G05165.2 26.226 469 311 7 20 486 25 460 1.05e-41 155
Msa0418190 AT3G05165.1 26.226 469 311 7 20 486 25 460 1.05e-41 155
Msa0418190 AT5G17010.1 28.041 485 292 12 26 486 48 499 1.70e-41 155
Msa0418190 AT5G17010.3 28.041 485 292 12 26 486 48 499 1.70e-41 155
Msa0418190 AT5G17010.4 28.041 485 292 12 26 486 48 499 1.70e-41 155
Msa0418190 AT1G08900.5 26.829 410 274 6 84 486 23 413 4.06e-40 150
Msa0418190 AT1G08900.3 26.829 410 274 6 84 486 57 447 9.27e-40 150
Msa0418190 AT1G08900.1 26.829 410 274 6 84 486 65 455 1.29e-39 149
Msa0418190 AT1G08900.2 26.829 410 274 6 84 486 65 455 1.29e-39 149
Msa0418190 AT2G48020.2 25.799 407 286 5 84 488 68 460 4.62e-39 148
Msa0418190 AT2G48020.1 25.799 407 286 5 84 488 68 460 4.62e-39 148
Msa0418190 AT1G19450.1 26.551 403 289 2 84 486 89 484 8.31e-39 148
Msa0418190 AT5G59250.1 27.066 484 305 12 24 486 97 553 8.34e-39 149
Msa0418190 AT3G05400.1 25.990 404 287 5 84 487 66 457 1.69e-38 146
Msa0418190 AT4G04750.1 28.030 396 261 8 98 486 90 468 6.79e-38 145
Msa0418190 AT4G04750.2 28.030 396 261 8 98 486 90 468 6.79e-38 145
Msa0418190 AT4G04750.3 27.481 393 267 6 98 486 134 512 1.33e-37 145
Msa0418190 AT2G43330.1 25.299 502 334 13 2 492 11 482 5.11e-37 143
Msa0418190 AT3G03090.1 27.601 471 298 13 33 486 55 499 6.66e-37 143
Msa0418190 AT1G08930.1 24.307 469 320 7 20 486 53 488 8.31e-37 142
Msa0418190 AT1G08930.2 24.307 469 320 7 20 486 53 488 8.31e-37 142
Msa0418190 AT3G05165.4 25.408 429 281 6 20 444 25 418 2.47e-36 140
Msa0418190 AT3G05165.5 25.408 429 281 6 20 444 25 418 2.47e-36 140
Msa0418190 AT3G05165.6 25.523 478 302 10 20 491 25 454 3.25e-36 141
Msa0418190 AT5G27360.1 24.257 404 288 5 86 486 77 465 1.73e-35 138
Msa0418190 AT1G30220.1 31.322 348 207 8 36 376 39 361 3.62e-35 139
Msa0418190 AT3G05155.1 24.533 428 301 9 64 486 45 455 3.86e-35 137
Msa0418190 AT5G27360.3 24.257 404 288 5 86 486 125 513 4.82e-35 138
Msa0418190 AT3G05400.2 25.743 404 268 6 84 487 66 437 5.31e-35 136
Msa0418190 AT1G54730.2 24.891 458 309 7 31 486 38 462 5.39e-35 137
Msa0418190 AT1G08890.1 24.760 416 285 5 84 491 67 462 1.23e-34 135
Msa0418190 AT1G05030.1 27.706 462 298 11 31 487 85 515 6.42e-34 134
Msa0418190 AT1G08900.4 26.344 372 248 6 84 448 65 417 1.29e-33 132
Msa0418190 AT4G04760.3 25.735 408 284 6 84 486 12 405 1.52e-33 132
Msa0418190 AT4G04760.1 25.735 408 284 6 84 486 71 464 3.27e-33 132
Msa0418190 AT1G05030.2 28.087 413 279 8 80 487 64 463 4.43e-33 131
Msa0418190 AT5G27360.2 24.791 359 252 5 131 486 18 361 5.14e-33 129
Msa0418190 AT5G27360.5 24.791 359 252 5 131 486 18 361 5.14e-33 129
Msa0418190 AT4G04760.2 25.369 406 285 6 84 486 71 461 8.82e-32 128
Msa0418190 AT1G79820.2 25.482 467 302 15 30 487 59 488 1.81e-31 127
Msa0418190 AT1G79820.1 25.482 467 302 15 30 487 59 488 1.81e-31 127
Msa0418190 AT5G18840.1 24.519 416 277 8 84 486 84 475 1.92e-31 127
Msa0418190 AT1G54730.5 24.123 456 294 7 31 486 38 441 2.60e-31 126
Msa0418190 AT3G05150.1 26.847 406 280 8 84 486 75 466 5.45e-31 125
Msa0418190 AT3G05150.3 26.847 406 280 8 84 486 75 466 5.45e-31 125
Msa0418190 AT3G05150.2 26.847 406 280 8 84 486 75 466 6.26e-31 125
Msa0418190 AT1G54730.3 24.760 416 278 7 31 444 38 420 1.76e-30 123
Msa0418190 AT4G16480.2 28.367 349 222 8 36 374 38 368 3.93e-30 124
Msa0418190 AT4G16480.3 28.367 349 222 8 36 374 38 368 3.93e-30 124
Msa0418190 AT4G16480.1 28.367 349 222 8 36 374 38 368 3.93e-30 124
Msa0418190 AT1G67300.2 25.103 486 326 10 7 487 36 488 2.08e-29 121
Msa0418190 AT1G67300.1 25.709 494 312 13 7 487 36 487 1.01e-28 119
Msa0418190 AT1G67300.3 25.709 494 312 13 7 487 36 487 1.01e-28 119
Msa0418190 AT1G67300.6 25.740 439 276 11 7 435 36 434 1.14e-27 115
Msa0418190 AT1G67300.7 25.740 439 276 11 7 435 36 434 1.14e-27 115
Msa0418190 AT1G54730.4 23.913 414 263 7 31 444 38 399 7.02e-27 113
Msa0418190 AT1G79820.4 25.000 412 268 13 30 435 59 435 7.33e-27 113
Msa0418190 AT3G20460.1 23.291 395 291 5 92 486 101 483 6.29e-26 111
Msa0418190 AT1G67300.4 25.576 434 273 11 7 430 36 429 1.23e-25 109
Msa0418190 AT1G67300.5 25.576 434 273 11 7 430 36 429 1.23e-25 109
Msa0418190 AT1G54730.9 24.051 395 265 7 31 423 38 399 7.66e-24 103
Msa0418190 AT1G54730.7 24.051 395 265 7 31 423 38 399 7.66e-24 103
Msa0418190 AT1G08920.1 21.728 405 301 5 84 486 72 462 1.14e-23 104
Msa0418190 AT2G35740.1 25.439 342 225 8 36 365 37 360 1.26e-23 104
Msa0418190 AT5G27360.4 21.182 406 283 7 20 422 30 401 1.45e-23 103
Msa0418190 AT2G48020.4 25.338 296 211 4 84 377 68 355 2.92e-23 102
Msa0418190 AT1G08920.2 20.936 406 310 4 84 486 72 469 3.08e-23 103
Msa0418190 AT3G05155.2 23.630 292 210 4 64 353 45 325 2.01e-22 98.6
Msa0418190 AT5G17010.2 24.370 476 247 13 33 486 52 436 2.04e-22 100
Msa0418190 AT1G54730.11 24.768 323 216 5 31 353 38 333 3.83e-22 97.8
Msa0418190 AT2G48020.3 25.185 270 194 3 84 353 68 329 5.42e-22 97.8
Msa0418190 AT1G54730.10 24.667 300 202 4 31 330 38 313 2.27e-21 95.5
Msa0418190 AT1G54730.6 24.667 300 202 4 31 330 38 313 2.27e-21 95.5
Msa0418190 AT3G51490.1 29.528 254 155 9 24 273 3 236 1.18e-20 96.3
Msa0418190 AT1G54730.8 24.333 300 203 4 31 330 38 313 1.28e-20 94.4
Msa0418190 AT3G51490.2 29.528 254 155 9 24 273 3 236 1.31e-20 95.9
Msa0418190 AT3G51490.2 25.847 236 156 6 260 483 486 714 4.20e-12 69.3
Msa0418190 AT1G79820.3 22.796 465 269 14 30 487 59 440 6.37e-20 92.8
Msa0418190 AT1G08920.3 21.680 369 261 6 84 438 72 426 1.19e-19 92.0
Msa0418190 AT3G51490.3 31.548 168 110 5 109 273 21 186 2.07e-19 92.0
Msa0418190 AT3G51490.3 25.847 236 156 6 260 483 436 664 3.69e-12 69.3
Msa0418190 AT4G35300.9 33.136 169 108 5 108 273 70 236 4.72e-17 84.7
Msa0418190 AT4G35300.9 26.977 215 129 6 285 483 508 710 1.62e-11 67.4
Msa0418190 AT4G35300.2 33.136 169 108 5 108 273 70 236 4.72e-17 84.7
Msa0418190 AT4G35300.2 26.977 215 129 6 285 483 508 710 1.62e-11 67.4
Msa0418190 AT4G35300.3 33.136 169 108 5 108 273 70 236 4.72e-17 84.7
Msa0418190 AT4G35300.3 26.977 215 129 6 285 483 508 710 1.62e-11 67.4
Msa0418190 AT4G35300.4 33.136 169 108 5 108 273 70 236 5.30e-17 84.7
Msa0418190 AT4G35300.4 26.977 215 129 6 285 483 518 720 1.66e-11 67.4
Msa0418190 AT4G35300.8 33.136 169 108 5 108 273 70 236 5.30e-17 84.7
Msa0418190 AT4G35300.8 26.977 215 129 6 285 483 518 720 1.66e-11 67.4
Msa0418190 AT4G35300.6 33.136 169 108 5 108 273 70 236 5.30e-17 84.7
Msa0418190 AT4G35300.6 26.977 215 129 6 285 483 518 720 1.66e-11 67.4
Msa0418190 AT4G35300.11 33.136 169 108 5 108 273 70 236 5.30e-17 84.7
Msa0418190 AT4G35300.11 26.977 215 129 6 285 483 518 720 1.66e-11 67.4
Msa0418190 AT4G35300.1 33.136 169 108 5 108 273 70 236 5.30e-17 84.7
Msa0418190 AT4G35300.1 26.977 215 129 6 285 483 518 720 1.66e-11 67.4
Msa0418190 AT4G35300.10 33.136 169 108 5 108 273 70 236 5.30e-17 84.7
Msa0418190 AT4G35300.10 26.977 215 129 6 285 483 518 720 1.66e-11 67.4
Msa0418190 AT4G35300.7 33.136 169 108 5 108 273 70 236 5.30e-17 84.7
Msa0418190 AT4G35300.7 26.977 215 129 6 285 483 518 720 1.66e-11 67.4
Msa0418190 AT1G79820.5 23.098 368 210 10 127 487 77 378 1.28e-16 82.0
Msa0418190 AT1G20840.2 29.717 212 137 6 77 278 30 239 2.14e-16 82.8
Msa0418190 AT1G20840.1 29.717 212 137 6 77 278 30 239 2.14e-16 82.8
Msa0418190 AT4G35300.5 26.977 215 129 6 285 483 321 523 1.52e-11 67.0

Find 111 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGATTCTTGTTCGTTAC+TGG 0.128057 3_2:+65831707 Msa0418190:CDS
CCCTGTAACTTGTTGGAAAA+AGG 0.149049 3_2:-65831540 None:intergenic
CTCAAAGCGCCTCGCCATTT+TGG 0.167493 3_2:-65831158 None:intergenic
TAATTAAGAACCTCTATATT+TGG 0.172485 3_2:+65828981 Msa0418190:five_prime_UTR
CCTAACCTCTTTAGATCTTT+AGG 0.188314 3_2:+65831587 Msa0418190:CDS
CAAGTTACTGCTACCAATTT+TGG 0.197138 3_2:+65829037 Msa0418190:CDS
CCTTTAAAACCATATTAAAA+AGG 0.205010 3_2:+65831480 Msa0418190:CDS
GAACCTCTATATTTGGAAAA+TGG 0.211269 3_2:+65828988 Msa0418190:exon
TGTTTCTATGCTGCGGGTTT+TGG 0.214772 3_2:+65832376 Msa0418190:CDS
GGATATGACATCGGAATTTC+AGG 0.222818 3_2:+65829124 Msa0418190:CDS
ATCTTGGGTCGTGTTCTTCT+TGG 0.226529 3_2:+65829528 Msa0418190:CDS
TCCAGTGCTTCTTATATTTA+CGG 0.253516 3_2:-65832446 None:intergenic
TGTTAGTTTGCCACCAAAAT+TGG 0.286869 3_2:-65829050 None:intergenic
CTCTTTAGATCTTTAGGTTT+GGG 0.298390 3_2:+65831593 Msa0418190:CDS
ATCAAAAGGCAATGCAATAT+TGG 0.299239 3_2:+65832339 Msa0418190:CDS
CGTTTATCCCTGTAACTTGT+TGG 0.300744 3_2:-65831547 None:intergenic
AAATATTCCTATGCTTATCT+TGG 0.307587 3_2:+65829512 Msa0418190:CDS
GGAGTTGGTATAATCTTTGC+AGG 0.317632 3_2:+65831203 Msa0418190:CDS
CCAGTGCTTCTTATATTTAC+GGG 0.327384 3_2:-65832445 None:intergenic
TTACTTTCTGCCATTCTACT+TGG 0.330088 3_2:+65831629 Msa0418190:CDS
GGTGGTATTGTCTTCCTTGC+TGG 0.336236 3_2:+65829465 Msa0418190:CDS
TATGGGGTAAACATTGGTTT+TGG 0.345672 3_2:+65832656 Msa0418190:CDS
AGCAAAGCTACGACGATGTT+TGG 0.348265 3_2:+65829420 Msa0418190:CDS
CTTGGACTTGCAGTTGTGCC+TGG 0.348351 3_2:+65831275 Msa0418190:CDS
CGGAGAAACGTCATCATAAT+AGG 0.348722 3_2:+65829444 Msa0418190:CDS
CTGAAGTTGCTCCACCAAAA+TGG 0.353581 3_2:+65831144 Msa0418190:CDS
TCTAGTGTTATTGATCGATT+TGG 0.353688 3_2:+65831683 Msa0418190:CDS
CCTCTTTAGATCTTTAGGTT+TGG 0.361445 3_2:+65831592 Msa0418190:CDS
ATGTTATGCCACTTTAAGTT+CGG 0.376560 3_2:+65832532 Msa0418190:CDS
GGTCGTGTTCTTCTTGGGTT+AGG 0.377383 3_2:+65829534 Msa0418190:CDS
CTTGCTGGTGGTGCCATTAA+CGG 0.381192 3_2:+65829480 Msa0418190:CDS
TGTTATGCCACTTTAAGTTC+GGG 0.386010 3_2:+65832533 Msa0418190:CDS
TAGAAAGGCAGCTGGTACTA+AGG 0.387687 3_2:+65829308 Msa0418190:CDS
TTTGCAGGTTGCATAAACTA+TGG 0.389689 3_2:+65831218 Msa0418190:CDS
TGGAGTCAATGCACATCATA+TGG 0.390532 3_2:+65832638 Msa0418190:CDS
GCTGCCTTTCTAAGAATGTC+TGG 0.398895 3_2:-65829297 None:intergenic
GGCTGGTGGAGGATTCTCTA+TGG 0.398898 3_2:+65829009 Msa0418190:CDS
TCTTGGGTCGTGTTCTTCTT+GGG 0.403493 3_2:+65829529 Msa0418190:CDS
GAAGATTCTTGTTCGTTACT+GGG 0.405890 3_2:+65831708 Msa0418190:CDS
GCAGTGGTAGCTGGTGTTCA+TGG 0.409202 3_2:+65832304 Msa0418190:CDS
CGGTTTGTTAAAGGAGAAGA+TGG 0.426425 3_2:+65832682 Msa0418190:CDS
ACATCTTCTCATTATCTAGC+TGG 0.429977 3_2:+65829375 Msa0418190:CDS
ATTGTGCTGGCAGTGGTAGC+TGG 0.430655 3_2:+65832295 Msa0418190:CDS
AATATTCCTATGCTTATCTT+GGG 0.434718 3_2:+65829513 Msa0418190:CDS
CTTCCCAGACATTCTTAGAA+AGG 0.438106 3_2:+65829293 Msa0418190:CDS
GGAGACTAAAGGAATTGCTT+TGG 0.447213 3_2:+65832618 Msa0418190:CDS
CCTAAAGATCTAAAGAGGTT+AGG 0.450908 3_2:-65831587 None:intergenic
ACCACGTTCGACTAAGCTGT+TGG 0.460799 3_2:-65831339 None:intergenic
TAACTCAGGTTGAATATCAA+TGG 0.460980 3_2:-65831408 None:intergenic
TGTTGCTGTGCATTTCATAA+TGG 0.463293 3_2:+65832480 Msa0418190:CDS
CTCTATATTTGGAAAATGGC+TGG 0.465982 3_2:+65828992 Msa0418190:exon
TTACTATGTTTCTATGCTGC+GGG 0.466765 3_2:+65832370 Msa0418190:CDS
GTTCTTCTTGGGTTAGGTGT+CGG 0.469199 3_2:+65829540 Msa0418190:CDS
GGAGTCAATGCACATCATAT+GGG 0.483226 3_2:+65832639 Msa0418190:CDS
TCTCCATCCCCATGTGTGCT+TGG 0.484108 3_2:-65831246 None:intergenic
CCCGTAAATATAAGAAGCAC+TGG 0.502898 3_2:+65832445 Msa0418190:CDS
TTTAACAACTCCAAGTAGAA+TGG 0.503093 3_2:-65831639 None:intergenic
AAAGCAATTCCTTTAGTCTC+CGG 0.505065 3_2:-65832616 None:intergenic
TATTATCATGTCTATATGCT+TGG 0.508798 3_2:+65831733 Msa0418190:CDS
TTAATAAGTTCTTCTAACTC+AGG 0.509188 3_2:-65831422 None:intergenic
GGTACAAATGACATATCAAA+AGG 0.512295 3_2:+65832325 Msa0418190:CDS
TGTTGGGCGTGTCAGTTATG+AGG 0.512619 3_2:-65831322 None:intergenic
TTTACTATGTTTCTATGCTG+CGG 0.515334 3_2:+65832369 Msa0418190:CDS
CCACGTTCGACTAAGCTGTT+GGG 0.516815 3_2:-65831338 None:intergenic
ACTGGATGCAGCAACTATGC+AGG 0.518672 3_2:-65829089 None:intergenic
TGGGGATGGAGACTATCTCT+TGG 0.519663 3_2:+65831257 Msa0418190:CDS
AAAATGCCCCGAACTTAAAG+TGG 0.523444 3_2:-65832540 None:intergenic
CCAAACCTAAAGATCTAAAG+AGG 0.525169 3_2:-65831592 None:intergenic
ATTTGGAAAATGGCTGGTGG+AGG 0.530401 3_2:+65828998 Msa0418190:exon
AAGATTCTTGTTCGTTACTG+GGG 0.542844 3_2:+65831709 Msa0418190:CDS
TGGATTTGTGTCGTCACTTG+TGG 0.544283 3_2:+65829395 Msa0418190:CDS
ATGGCACTGCCAAGCACACA+TGG 0.546307 3_2:+65831237 Msa0418190:CDS
TTGGTGGAGCAACTTCAGAT+AGG 0.546521 3_2:-65831139 None:intergenic
CCTGGAGCTGTAATTACCAT+TGG 0.547596 3_2:+65831293 Msa0418190:CDS
TGCATAGTTGCTGCATCCAG+TGG 0.549828 3_2:+65829091 Msa0418190:CDS
AAGGGAATATAGACCTCAGT+TGG 0.552633 3_2:+65831499 Msa0418190:CDS
CTGCCAAGCACACATGGGGA+TGG 0.554164 3_2:+65831243 Msa0418190:CDS
GCTTGCGGTGTCCATTGTGC+TGG 0.554774 3_2:+65832282 Msa0418190:intron
CCAATGGTAATTACAGCTCC+AGG 0.559410 3_2:-65831293 None:intergenic
GTTAAAGGAGAAGATGGAGA+AGG 0.565819 3_2:+65832688 Msa0418190:CDS
ACATCATATGGGGTAAACAT+TGG 0.571808 3_2:+65832650 Msa0418190:CDS
GACATTCTTAGAAAGGCAGC+TGG 0.576083 3_2:+65829300 Msa0418190:CDS
CTGCCTTTCTAAGAATGTCT+GGG 0.579026 3_2:-65829296 None:intergenic
AGATTCTTGTTCGTTACTGG+GGG 0.587355 3_2:+65831710 Msa0418190:CDS
GGTATTGTCTTCCTTGCTGG+TGG 0.587453 3_2:+65829468 Msa0418190:CDS
GTTATGCCACTTTAAGTTCG+GGG 0.589545 3_2:+65832534 Msa0418190:CDS
CTGGAATTAGCCATGCTAGA+GGG 0.590701 3_2:-65832411 None:intergenic
AAGCTACGACGATGTTTGGT+CGG 0.592316 3_2:+65829424 Msa0418190:CDS
ACACGACCCAAGATAAGCAT+AGG 0.599269 3_2:-65829519 None:intergenic
AGTTATGAGGAAGGCACCAA+TGG 0.602973 3_2:-65831309 None:intergenic
ATATAGACCTCAGTTGGTGA+TGG 0.608654 3_2:+65831505 Msa0418190:CDS
TATCATGGAGCCCTCTAGCA+TGG 0.611303 3_2:+65832401 Msa0418190:CDS
GGTGTCCATTGTGCTGGCAG+TGG 0.616794 3_2:+65832288 Msa0418190:CDS
TGGCACTGCCAAGCACACAT+GGG 0.622519 3_2:+65831238 Msa0418190:CDS
AAAGCATTACATAAAATCAG+AGG 0.624019 3_2:+65831380 Msa0418190:CDS
GGGCGTGTCAGTTATGAGGA+AGG 0.625101 3_2:-65831318 None:intergenic
GCAAATGCCATCACCAACTG+AGG 0.625744 3_2:-65831512 None:intergenic
CGTTAATGGCACCACCAGCA+AGG 0.629715 3_2:-65829479 None:intergenic
TATATTTGGAAAATGGCTGG+TGG 0.630651 3_2:+65828995 Msa0418190:exon
CTCAGGTTGAATATCAATGG+AGG 0.632300 3_2:-65831405 None:intergenic
AGCTACCACTGCCAGCACAA+TGG 0.639024 3_2:-65832293 None:intergenic
GAGTCAATGCACATCATATG+GGG 0.640900 3_2:+65832640 Msa0418190:CDS
CAATAACACTAGAAGAGATG+AGG 0.641663 3_2:-65831673 None:intergenic
GGCACTGCCAAGCACACATG+GGG 0.646594 3_2:+65831239 Msa0418190:CDS
GCTGGTGGTGCCATTAACGG+AGG 0.647650 3_2:+65829483 Msa0418190:CDS
GCAACTTCAGATAGGTACAA+TGG 0.649314 3_2:-65831131 None:intergenic
CCCAACAGCTTAGTCGAACG+TGG 0.653506 3_2:+65831338 Msa0418190:CDS
AGAAACGTCATCATAATAGG+TGG 0.664664 3_2:+65829447 Msa0418190:CDS
GTTGCTCCACCAAAATGGCG+AGG 0.676475 3_2:+65831149 Msa0418190:CDS
TTTAAGAAATGGCTTCATGG+TGG 0.679695 3_2:-65829265 None:intergenic
GCTGGAATTAGCCATGCTAG+AGG 0.694505 3_2:-65832412 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAATAAGAGTATATAT+AGG - chr3_2:65829729-65829748 None:intergenic 10.0%
!! TTAAAAAAACAAGATTAAAT+AGG - chr3_2:65829833-65829852 None:intergenic 10.0%
!!! TTAAATCTAAACTTTAAAAT+AGG + chr3_2:65829929-65829948 Msa0418190:intron 10.0%
!!! TAAATCTAAACTTTAAAATA+GGG + chr3_2:65829930-65829949 Msa0418190:intron 10.0%
!! AAACAAAAAAATTCTCAAAA+GGG - chr3_2:65829654-65829673 None:intergenic 15.0%
!! AAAACAAAAAAATTCTCAAA+AGG - chr3_2:65829655-65829674 None:intergenic 15.0%
!!! TGATTTTTTGCTTATATTAT+GGG - chr3_2:65829764-65829783 None:intergenic 15.0%
!!! ATGATTTTTTGCTTATATTA+TGG - chr3_2:65829765-65829784 None:intergenic 15.0%
!! AAAAAATAAGATTAAATCTG+AGG - chr3_2:65829868-65829887 None:intergenic 15.0%
!!! TTTTATCCTTAAAATTTGAT+GGG + chr3_2:65829894-65829913 Msa0418190:intron 15.0%
!!! TTTTTTTTGACAGATTAAAT+AGG - chr3_2:65830092-65830111 None:intergenic 15.0%
!! AATCTGTCAAAAAAAAAATA+AGG + chr3_2:65830096-65830115 Msa0418190:intron 15.0%
!!! TTATAGTCAAATTTGTTTAA+TGG - chr3_2:65830413-65830432 None:intergenic 15.0%
!! AATATTGTTCATAGTTTATA+TGG + chr3_2:65830612-65830631 Msa0418190:intron 15.0%
!! TAATAAAAAAAGCAGAAAAA+CGG + chr3_2:65830642-65830661 Msa0418190:intron 15.0%
!! AAAAACCATAAAAAGATAAA+AGG + chr3_2:65830905-65830924 Msa0418190:intron 15.0%
!!! AATTTCCTTTTATCTTTTTA+TGG - chr3_2:65830913-65830932 None:intergenic 15.0%
!!! TAATAAACTTTTTTTAAGGA+GGG - chr3_2:65830998-65831017 None:intergenic 15.0%
!!! ATAATAAACTTTTTTTAAGG+AGG - chr3_2:65830999-65831018 None:intergenic 15.0%
!!! GGAATAATAAACTTTTTTTA+AGG - chr3_2:65831002-65831021 None:intergenic 15.0%
!! AATATGTCATCAAAATTTAT+CGG - chr3_2:65831092-65831111 None:intergenic 15.0%
!!! CTTTTTAATATGGTTTTAAA+GGG - chr3_2:65831482-65831501 None:intergenic 15.0%
!!! CTTTAAAACCATATTAAAAA+GGG + chr3_2:65831481-65831500 Msa0418190:CDS 15.0%
!! GAAAATTTATATCAATGAAA+GGG - chr3_2:65832053-65832072 None:intergenic 15.0%
!! TGAAAATTTATATCAATGAA+AGG - chr3_2:65832054-65832073 None:intergenic 15.0%
!!! CAATTATTCTTTTATTTTCA+TGG + chr3_2:65832072-65832091 Msa0418190:intron 15.0%
!!! ATTTTTAATAATTGTGAAAG+TGG + chr3_2:65832153-65832172 Msa0418190:intron 15.0%
!! TAATTAAGAACCTCTATATT+TGG + chr3_2:65828981-65829000 Msa0418190:five_prime_UTR 20.0%
!! TGAAATTAATGTCAAATTTC+AGG + chr3_2:65829234-65829253 Msa0418190:intron 20.0%
!!! CAATGGGTTTTAAATAAATT+TGG + chr3_2:65829582-65829601 Msa0418190:intron 20.0%
!!! GTCTTTTTTGCTTATATTTT+GGG - chr3_2:65829800-65829819 None:intergenic 20.0%
!!! TGTCTTTTTTGCTTATATTT+TGG - chr3_2:65829801-65829820 None:intergenic 20.0%
!!! CTTTTATCCTTAAAATTTGA+TGG + chr3_2:65829893-65829912 Msa0418190:intron 20.0%
!!! GTACTTATAACTTTAAAAAC+TGG + chr3_2:65829952-65829971 Msa0418190:intron 20.0%
!!! TGACAGATTAAAAGTTTTTA+AGG - chr3_2:65830024-65830043 None:intergenic 20.0%
!!! CTATAAGAATGTTATTTTGT+TGG + chr3_2:65830427-65830446 Msa0418190:intron 20.0%
!!! AAACTCTAGTTTAAGTATAA+AGG + chr3_2:65830682-65830701 Msa0418190:intron 20.0%
!! TATAATAGAATGTGATGTTT+AGG + chr3_2:65830708-65830727 Msa0418190:intron 20.0%
!! TATTCGCAAATTTATTTATG+TGG + chr3_2:65830827-65830846 Msa0418190:intron 20.0%
!!! AATAAACTTTTTTTAAGGAG+GGG - chr3_2:65830997-65831016 None:intergenic 20.0%
!! ATTATTATTAGGGTTATGAT+AGG + chr3_2:65831035-65831054 Msa0418190:intron 20.0%
!! TTATTATTAGGGTTATGATA+GGG + chr3_2:65831036-65831055 Msa0418190:intron 20.0%
!!! GATTTTATGTAATGCTTTTT+TGG - chr3_2:65831378-65831397 None:intergenic 20.0%
!!! CCTTTTTAATATGGTTTTAA+AGG - chr3_2:65831483-65831502 None:intergenic 20.0%
!!! CCTTTAAAACCATATTAAAA+AGG + chr3_2:65831480-65831499 Msa0418190:CDS 20.0%
!!! TCTATATTCCCTTTTTAATA+TGG - chr3_2:65831492-65831511 None:intergenic 20.0%
!! ATAAAGGAAAATGTAACAAA+TGG - chr3_2:65831941-65831960 None:intergenic 20.0%
!!! TTTCATTATATTTTTCTTGC+CGG + chr3_2:65832597-65832616 Msa0418190:CDS 20.0%
! AATTAATGTCAAATTTCAGG+AGG + chr3_2:65829237-65829256 Msa0418190:intron 25.0%
!!! TTTTTTAAGAAATGGCTTCA+TGG - chr3_2:65829271-65829290 None:intergenic 25.0%
!!! GGGAAGAATTTTTTAAGAAA+TGG - chr3_2:65829279-65829298 None:intergenic 25.0%
! AAATATTCCTATGCTTATCT+TGG + chr3_2:65829512-65829531 Msa0418190:CDS 25.0%
! AATATTCCTATGCTTATCTT+GGG + chr3_2:65829513-65829532 Msa0418190:CDS 25.0%
! ACGATTTCCTAAATTTAGAA+CGG - chr3_2:65829616-65829635 None:intergenic 25.0%
! TTCTAAATTTAGGAAATCGT+TGG + chr3_2:65829616-65829635 Msa0418190:intron 25.0%
!! TTTTTGCTTATATTATGGGA+CGG - chr3_2:65829760-65829779 None:intergenic 25.0%
!! TTTTGACCCATCAAATTTTA+AGG - chr3_2:65829903-65829922 None:intergenic 25.0%
! TACTTAAACTAGAGTTTAGA+CGG - chr3_2:65830679-65830698 None:intergenic 25.0%
! TAGAGTAAAAAGTAGTTGTT+GGG - chr3_2:65830809-65830828 None:intergenic 25.0%
! ATAGAGTAAAAAGTAGTTGT+TGG - chr3_2:65830810-65830829 None:intergenic 25.0%
!!! TTTTGATGACATATTGCAAT+TGG + chr3_2:65831097-65831116 Msa0418190:intron 25.0%
!! AAAGCATTACATAAAATCAG+AGG + chr3_2:65831380-65831399 Msa0418190:CDS 25.0%
! TTAATAAGTTCTTCTAACTC+AGG - chr3_2:65831425-65831444 None:intergenic 25.0%
! TATTATCATGTCTATATGCT+TGG + chr3_2:65831733-65831752 Msa0418190:CDS 25.0%
!!! AATGTATTTAGGGCAATTTT+TGG - chr3_2:65831806-65831825 None:intergenic 25.0%
! CTCCTTAACAAATGTATTTA+GGG - chr3_2:65831816-65831835 None:intergenic 25.0%
! ACTCCTTAACAAATGTATTT+AGG - chr3_2:65831817-65831836 None:intergenic 25.0%
! TCCTTTATAAATACTCTATC+TGG + chr3_2:65831953-65831972 Msa0418190:intron 25.0%
!! TCCAGATAGAGTATTTATAA+AGG - chr3_2:65831957-65831976 None:intergenic 25.0%
! TTTATGATAATCAAGACAAG+AGG + chr3_2:65832180-65832199 Msa0418190:intron 25.0%
! TTATGATAATCAAGACAAGA+GGG + chr3_2:65832181-65832200 Msa0418190:intron 25.0%
GAACCTCTATATTTGGAAAA+TGG + chr3_2:65828988-65829007 Msa0418190:exon 30.0%
! CTTCTTTTTGGATATGACAT+CGG + chr3_2:65829115-65829134 Msa0418190:CDS 30.0%
!!! ATTTTTAGAACCTCCGTTAA+TGG - chr3_2:65829496-65829515 None:intergenic 30.0%
TCACTAATCAAGTAAGTCAA+TGG + chr3_2:65829565-65829584 Msa0418190:intron 30.0%
CACTAATCAAGTAAGTCAAT+GGG + chr3_2:65829566-65829585 Msa0418190:intron 30.0%
! TTCCTAAATTTAGAACGGAT+GGG - chr3_2:65829611-65829630 None:intergenic 30.0%
! TTTCCTAAATTTAGAACGGA+TGG - chr3_2:65829612-65829631 None:intergenic 30.0%
! GAGAGAGAATACATAGTTTT+TGG + chr3_2:65830363-65830382 Msa0418190:intron 30.0%
AGGTTATCCTTGAAGAATTA+CGG + chr3_2:65830728-65830747 Msa0418190:intron 30.0%
AAATTACCCGTAATTCTTCA+AGG - chr3_2:65830738-65830757 None:intergenic 30.0%
ACTAATTAAATTAGCCGCAT+TGG + chr3_2:65830766-65830785 Msa0418190:intron 30.0%
TACTCTCAAATTTACCAATG+CGG - chr3_2:65830783-65830802 None:intergenic 30.0%
AAATTAGTCACACTTCTTCA+CGG + chr3_2:65830873-65830892 Msa0418190:intron 30.0%
TGACATATTGCAATTGGAAA+AGG + chr3_2:65831103-65831122 Msa0418190:intron 30.0%
!! TAACTCAGGTTGAATATCAA+TGG - chr3_2:65831411-65831430 None:intergenic 30.0%
! CTCTTTAGATCTTTAGGTTT+GGG + chr3_2:65831593-65831612 Msa0418190:CDS 30.0%
TTTAACAACTCCAAGTAGAA+TGG - chr3_2:65831642-65831661 None:intergenic 30.0%
! TCTAGTGTTATTGATCGATT+TGG + chr3_2:65831683-65831702 Msa0418190:CDS 30.0%
!!! TATTTAGGGCAATTTTTGGT+AGG - chr3_2:65831802-65831821 None:intergenic 30.0%
! TGCCCTAAATACATTTGTTA+AGG + chr3_2:65831811-65831830 Msa0418190:intron 30.0%
!!! GGAAGTGCAATTGTATTTTT+TGG + chr3_2:65831974-65831993 Msa0418190:intron 30.0%
GGTACAAATGACATATCAAA+AGG + chr3_2:65832325-65832344 Msa0418190:CDS 30.0%
ATCAAAAGGCAATGCAATAT+TGG + chr3_2:65832339-65832358 Msa0418190:CDS 30.0%
! TTTACTATGTTTCTATGCTG+CGG + chr3_2:65832369-65832388 Msa0418190:CDS 30.0%
TCCAGTGCTTCTTATATTTA+CGG - chr3_2:65832449-65832468 None:intergenic 30.0%
!! ATGTTATGCCACTTTAAGTT+CGG + chr3_2:65832532-65832551 Msa0418190:CDS 30.0%
!! ATTTTTGTTCTATGCTGGTT+GGG + chr3_2:65832558-65832577 Msa0418190:CDS 30.0%
!!! GTAAACATTGGTTTTGGTAT+CGG + chr3_2:65832662-65832681 Msa0418190:CDS 30.0%
!!! TTTTGGTATCGGTTTGTTAA+AGG + chr3_2:65832673-65832692 Msa0418190:CDS 30.0%
!! CAGCCATTTTCCAAATATAG+AGG - chr3_2:65828994-65829013 None:intergenic 35.0%
CTCTATATTTGGAAAATGGC+TGG + chr3_2:65828992-65829011 Msa0418190:exon 35.0%
TATATTTGGAAAATGGCTGG+TGG + chr3_2:65828995-65829014 Msa0418190:exon 35.0%
! CAAGTTACTGCTACCAATTT+TGG + chr3_2:65829037-65829056 Msa0418190:CDS 35.0%
!! TGTTAGTTTGCCACCAAAAT+TGG - chr3_2:65829053-65829072 None:intergenic 35.0%
CGATGTCATATCCAAAAAGA+AGG - chr3_2:65829117-65829136 None:intergenic 35.0%
TTTAAGAAATGGCTTCATGG+TGG - chr3_2:65829268-65829287 None:intergenic 35.0%
ACATCTTCTCATTATCTAGC+TGG + chr3_2:65829375-65829394 Msa0418190:CDS 35.0%
AGAAACGTCATCATAATAGG+TGG + chr3_2:65829447-65829466 Msa0418190:CDS 35.0%
! TCCTAAATTTAGAACGGATG+GGG - chr3_2:65829610-65829629 None:intergenic 35.0%
AAAAAGCAGAAAAACGGACA+CGG + chr3_2:65830648-65830667 Msa0418190:intron 35.0%
GGTTATCCTTGAAGAATTAC+GGG + chr3_2:65830729-65830748 Msa0418190:intron 35.0%
! TTATGATAGGGCACTAGTTA+AGG + chr3_2:65831048-65831067 Msa0418190:intron 35.0%
! ACAAGCTTCCCATTCTTTTT+GGG + chr3_2:65831182-65831201 Msa0418190:CDS 35.0%
TACCAACTCCCAAAAAGAAT+GGG - chr3_2:65831193-65831212 None:intergenic 35.0%
ATACCAACTCCCAAAAAGAA+TGG - chr3_2:65831194-65831213 None:intergenic 35.0%
TTTGCAGGTTGCATAAACTA+TGG + chr3_2:65831218-65831237 Msa0418190:CDS 35.0%
!! CTGTAACTTGTTGGAAAAAG+GGG - chr3_2:65831541-65831560 None:intergenic 35.0%
!! CCTGTAACTTGTTGGAAAAA+GGG - chr3_2:65831542-65831561 None:intergenic 35.0%
! CCTTTTTCCAACAAGTTACA+GGG + chr3_2:65831540-65831559 Msa0418190:CDS 35.0%
CCTAAAGATCTAAAGAGGTT+AGG - chr3_2:65831590-65831609 None:intergenic 35.0%
CCTAACCTCTTTAGATCTTT+AGG + chr3_2:65831587-65831606 Msa0418190:CDS 35.0%
CCAAACCTAAAGATCTAAAG+AGG - chr3_2:65831595-65831614 None:intergenic 35.0%
! CCTCTTTAGATCTTTAGGTT+TGG + chr3_2:65831592-65831611 Msa0418190:CDS 35.0%
TTACTTTCTGCCATTCTACT+TGG + chr3_2:65831629-65831648 Msa0418190:CDS 35.0%
CAATAACACTAGAAGAGATG+AGG - chr3_2:65831676-65831695 None:intergenic 35.0%
GAAGATTCTTGTTCGTTACT+GGG + chr3_2:65831708-65831727 Msa0418190:CDS 35.0%
AAGATTCTTGTTCGTTACTG+GGG + chr3_2:65831709-65831728 Msa0418190:CDS 35.0%
! TTACTATGTTTCTATGCTGC+GGG + chr3_2:65832370-65832389 Msa0418190:CDS 35.0%
CCAGTGCTTCTTATATTTAC+GGG - chr3_2:65832448-65832467 None:intergenic 35.0%
TGTTGCTGTGCATTTCATAA+TGG + chr3_2:65832480-65832499 Msa0418190:CDS 35.0%
!! TGTTATGCCACTTTAAGTTC+GGG + chr3_2:65832533-65832552 Msa0418190:CDS 35.0%
! CATTTTTGTTCTATGCTGGT+TGG + chr3_2:65832557-65832576 Msa0418190:CDS 35.0%
AAAGCAATTCCTTTAGTCTC+CGG - chr3_2:65832619-65832638 None:intergenic 35.0%
ACATCATATGGGGTAAACAT+TGG + chr3_2:65832650-65832669 Msa0418190:CDS 35.0%
!!! TATGGGGTAAACATTGGTTT+TGG + chr3_2:65832656-65832675 Msa0418190:CDS 35.0%
! GTTACTGCTACCAATTTTGG+TGG + chr3_2:65829040-65829059 Msa0418190:CDS 40.0%
ATATCCAAAAAGAAGGCCAC+TGG - chr3_2:65829110-65829129 None:intergenic 40.0%
GGATATGACATCGGAATTTC+AGG + chr3_2:65829124-65829143 Msa0418190:CDS 40.0%
CTTCCCAGACATTCTTAGAA+AGG + chr3_2:65829293-65829312 Msa0418190:CDS 40.0%
! CTGCCTTTCTAAGAATGTCT+GGG - chr3_2:65829299-65829318 None:intergenic 40.0%
CGGAGAAACGTCATCATAAT+AGG + chr3_2:65829444-65829463 Msa0418190:CDS 40.0%
! ACCCCATCCGTTCTAAATTT+AGG + chr3_2:65829606-65829625 Msa0418190:intron 40.0%
TGCTTATATTATGGGACGGA+GGG - chr3_2:65829756-65829775 None:intergenic 40.0%
TTGCTTATATTATGGGACGG+AGG - chr3_2:65829757-65829776 None:intergenic 40.0%
GCAACTTCAGATAGGTACAA+TGG - chr3_2:65831134-65831153 None:intergenic 40.0%
! CACAAGCTTCCCATTCTTTT+TGG + chr3_2:65831181-65831200 Msa0418190:CDS 40.0%
!! TTCCCATTCTTTTTGGGAGT+TGG + chr3_2:65831188-65831207 Msa0418190:CDS 40.0%
!! GGAGTTGGTATAATCTTTGC+AGG + chr3_2:65831203-65831222 Msa0418190:CDS 40.0%
!! CTCAGGTTGAATATCAATGG+AGG - chr3_2:65831408-65831427 None:intergenic 40.0%
AAGGGAATATAGACCTCAGT+TGG + chr3_2:65831499-65831518 Msa0418190:CDS 40.0%
!! ATATAGACCTCAGTTGGTGA+TGG + chr3_2:65831505-65831524 Msa0418190:CDS 40.0%
! CCCTTTTTCCAACAAGTTAC+AGG + chr3_2:65831539-65831558 Msa0418190:CDS 40.0%
!! CCCTGTAACTTGTTGGAAAA+AGG - chr3_2:65831543-65831562 None:intergenic 40.0%
! CGTTTATCCCTGTAACTTGT+TGG - chr3_2:65831550-65831569 None:intergenic 40.0%
CGAAGATTCTTGTTCGTTAC+TGG + chr3_2:65831707-65831726 Msa0418190:CDS 40.0%
AGATTCTTGTTCGTTACTGG+GGG + chr3_2:65831710-65831729 Msa0418190:CDS 40.0%
TATGAACACCATGAAGCTTG+CGG + chr3_2:65832267-65832286 Msa0418190:intron 40.0%
TTTACGGGAAAAATCTCAGC+TGG - chr3_2:65832433-65832452 None:intergenic 40.0%
! CCCGTAAATATAAGAAGCAC+TGG + chr3_2:65832445-65832464 Msa0418190:CDS 40.0%
!! GTTATGCCACTTTAAGTTCG+GGG + chr3_2:65832534-65832553 Msa0418190:CDS 40.0%
AAAATGCCCCGAACTTAAAG+TGG - chr3_2:65832543-65832562 None:intergenic 40.0%
! TTTTTCTTGCCGGAGACTAA+AGG + chr3_2:65832607-65832626 Msa0418190:CDS 40.0%
GGAGACTAAAGGAATTGCTT+TGG + chr3_2:65832618-65832637 Msa0418190:CDS 40.0%
TGGAGTCAATGCACATCATA+TGG + chr3_2:65832638-65832657 Msa0418190:CDS 40.0%
GGAGTCAATGCACATCATAT+GGG + chr3_2:65832639-65832658 Msa0418190:CDS 40.0%
GAGTCAATGCACATCATATG+GGG + chr3_2:65832640-65832659 Msa0418190:CDS 40.0%
!! CGGTTTGTTAAAGGAGAAGA+TGG + chr3_2:65832682-65832701 Msa0418190:CDS 40.0%
GTTAAAGGAGAAGATGGAGA+AGG + chr3_2:65832688-65832707 Msa0418190:CDS 40.0%
ATTTGGAAAATGGCTGGTGG+AGG + chr3_2:65828998-65829017 Msa0418190:exon 45.0%
! GCTGCCTTTCTAAGAATGTC+TGG - chr3_2:65829300-65829319 None:intergenic 45.0%
GACATTCTTAGAAAGGCAGC+TGG + chr3_2:65829300-65829319 Msa0418190:CDS 45.0%
TAGAAAGGCAGCTGGTACTA+AGG + chr3_2:65829308-65829327 Msa0418190:CDS 45.0%
TGGATTTGTGTCGTCACTTG+TGG + chr3_2:65829395-65829414 Msa0418190:CDS 45.0%
AGCAAAGCTACGACGATGTT+TGG + chr3_2:65829420-65829439 Msa0418190:CDS 45.0%
AAGCTACGACGATGTTTGGT+CGG + chr3_2:65829424-65829443 Msa0418190:CDS 45.0%
ACACGACCCAAGATAAGCAT+AGG - chr3_2:65829522-65829541 None:intergenic 45.0%
ATCTTGGGTCGTGTTCTTCT+TGG + chr3_2:65829528-65829547 Msa0418190:CDS 45.0%
TCTTGGGTCGTGTTCTTCTT+GGG + chr3_2:65829529-65829548 Msa0418190:CDS 45.0%
! GTTCTTCTTGGGTTAGGTGT+CGG + chr3_2:65829540-65829559 Msa0418190:CDS 45.0%
TTGGTGGAGCAACTTCAGAT+AGG - chr3_2:65831142-65831161 None:intergenic 45.0%
CTGAAGTTGCTCCACCAAAA+TGG + chr3_2:65831144-65831163 Msa0418190:CDS 45.0%
CCAATGGTAATTACAGCTCC+AGG - chr3_2:65831296-65831315 None:intergenic 45.0%
CCTGGAGCTGTAATTACCAT+TGG + chr3_2:65831293-65831312 Msa0418190:CDS 45.0%
!! AGTTATGAGGAAGGCACCAA+TGG - chr3_2:65831312-65831331 None:intergenic 45.0%
!! TGTTTCTATGCTGCGGGTTT+TGG + chr3_2:65832376-65832395 Msa0418190:CDS 45.0%
!!! CTGCGGGTTTTGGTTTATCA+TGG + chr3_2:65832386-65832405 Msa0418190:CDS 45.0%
CTGGAATTAGCCATGCTAGA+GGG - chr3_2:65832414-65832433 None:intergenic 45.0%
!! GGGGCATTTTTGTTCTATGC+TGG + chr3_2:65832553-65832572 Msa0418190:CDS 45.0%
!! AAAGAAATAATTAATATAAT+TGG - chr3_2:65829705-65829724 None:intergenic 5.0%
!! ATAATAATACAATAATTATA+AGG - chr3_2:65831023-65831042 None:intergenic 5.0%
!! ATAATTATTGTATTATTATT+AGG + chr3_2:65831024-65831043 Msa0418190:intron 5.0%
!! TAATTATTGTATTATTATTA+GGG + chr3_2:65831025-65831044 Msa0418190:intron 5.0%
ACTGGATGCAGCAACTATGC+AGG - chr3_2:65829092-65829111 None:intergenic 50.0%
TGCATAGTTGCTGCATCCAG+TGG + chr3_2:65829091-65829110 Msa0418190:CDS 50.0%
! GCATCCAGTGGCCTTCTTTT+TGG + chr3_2:65829103-65829122 Msa0418190:CDS 50.0%
GGTGGTATTGTCTTCCTTGC+TGG + chr3_2:65829465-65829484 Msa0418190:CDS 50.0%
GGTATTGTCTTCCTTGCTGG+TGG + chr3_2:65829468-65829487 Msa0418190:CDS 50.0%
!! CTTGCTGGTGGTGCCATTAA+CGG + chr3_2:65829480-65829499 Msa0418190:CDS 50.0%
GGTCGTGTTCTTCTTGGGTT+AGG + chr3_2:65829534-65829553 Msa0418190:CDS 50.0%
TGGGGATGGAGACTATCTCT+TGG + chr3_2:65831257-65831276 Msa0418190:CDS 50.0%
TGTTGGGCGTGTCAGTTATG+AGG - chr3_2:65831325-65831344 None:intergenic 50.0%
CCACGTTCGACTAAGCTGTT+GGG - chr3_2:65831341-65831360 None:intergenic 50.0%
ACCACGTTCGACTAAGCTGT+TGG - chr3_2:65831342-65831361 None:intergenic 50.0%
GCAAATGCCATCACCAACTG+AGG - chr3_2:65831515-65831534 None:intergenic 50.0%
AATGGACACCGCAAGCTTCA+TGG - chr3_2:65832278-65832297 None:intergenic 50.0%
TATCATGGAGCCCTCTAGCA+TGG + chr3_2:65832401-65832420 Msa0418190:CDS 50.0%
GCTGGAATTAGCCATGCTAG+AGG - chr3_2:65832415-65832434 None:intergenic 50.0%
GGCTGGTGGAGGATTCTCTA+TGG + chr3_2:65829009-65829028 Msa0418190:CDS 55.0%
CGTTAATGGCACCACCAGCA+AGG - chr3_2:65829482-65829501 None:intergenic 55.0%
GTTGCTCCACCAAAATGGCG+AGG + chr3_2:65831149-65831168 Msa0418190:CDS 55.0%
!! AAAGCGCCTCGCCATTTTGG+TGG - chr3_2:65831158-65831177 None:intergenic 55.0%
!! CTCAAAGCGCCTCGCCATTT+TGG - chr3_2:65831161-65831180 None:intergenic 55.0%
ATGGCACTGCCAAGCACACA+TGG + chr3_2:65831237-65831256 Msa0418190:CDS 55.0%
TGGCACTGCCAAGCACACAT+GGG + chr3_2:65831238-65831257 Msa0418190:CDS 55.0%
TCTCCATCCCCATGTGTGCT+TGG - chr3_2:65831249-65831268 None:intergenic 55.0%
CTTGGACTTGCAGTTGTGCC+TGG + chr3_2:65831275-65831294 Msa0418190:CDS 55.0%
GGGCGTGTCAGTTATGAGGA+AGG - chr3_2:65831321-65831340 None:intergenic 55.0%
CCCAACAGCTTAGTCGAACG+TGG + chr3_2:65831338-65831357 Msa0418190:CDS 55.0%
AGCTACCACTGCCAGCACAA+TGG - chr3_2:65832296-65832315 None:intergenic 55.0%
! ATTGTGCTGGCAGTGGTAGC+TGG + chr3_2:65832295-65832314 Msa0418190:CDS 55.0%
GCAGTGGTAGCTGGTGTTCA+TGG + chr3_2:65832304-65832323 Msa0418190:CDS 55.0%
!! GCTGGTGGTGCCATTAACGG+AGG + chr3_2:65829483-65829502 Msa0418190:CDS 60.0%
GGCACTGCCAAGCACACATG+GGG + chr3_2:65831239-65831258 Msa0418190:CDS 60.0%
CTGCCAAGCACACATGGGGA+TGG + chr3_2:65831243-65831262 Msa0418190:CDS 60.0%
GCTTGCGGTGTCCATTGTGC+TGG + chr3_2:65832282-65832301 Msa0418190:intron 60.0%
! GGTGTCCATTGTGCTGGCAG+TGG + chr3_2:65832288-65832307 Msa0418190:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 65828945 65832723 65828945 ID=Msa0418190;Name=Msa0418190
chr3_2 mRNA 65828945 65832723 65828945 ID=Msa0418190-mRNA-1;Parent=Msa0418190;Name=Msa0418190-mRNA-1;_AED=0.44;_eAED=0.44;_QI=62|0.66|0.25|1|1|1|4|0|509
chr3_2 exon 65828945 65829145 65828945 ID=Msa0418190-mRNA-1:exon:14886;Parent=Msa0418190-mRNA-1
chr3_2 exon 65829256 65829575 65829256 ID=Msa0418190-mRNA-1:exon:14887;Parent=Msa0418190-mRNA-1
chr3_2 exon 65831125 65831754 65831125 ID=Msa0418190-mRNA-1:exon:14888;Parent=Msa0418190-mRNA-1
chr3_2 exon 65832283 65832723 65832283 ID=Msa0418190-mRNA-1:exon:14889;Parent=Msa0418190-mRNA-1
chr3_2 five_prime_UTR 65828945 65829006 65828945 ID=Msa0418190-mRNA-1:five_prime_utr;Parent=Msa0418190-mRNA-1
chr3_2 CDS 65829007 65829145 65829007 ID=Msa0418190-mRNA-1:cds;Parent=Msa0418190-mRNA-1
chr3_2 CDS 65829256 65829575 65829256 ID=Msa0418190-mRNA-1:cds;Parent=Msa0418190-mRNA-1
chr3_2 CDS 65831125 65831754 65831125 ID=Msa0418190-mRNA-1:cds;Parent=Msa0418190-mRNA-1
chr3_2 CDS 65832283 65832723 65832283 ID=Msa0418190-mRNA-1:cds;Parent=Msa0418190-mRNA-1
Gene Sequence

>Msa0418190

ATGGCTGGTGGAGGATTCTCTATGGATACACAAGTTACTGCTACCAATTTTGGTGGCAAACTAACACTCTCAATCATCATTTCCTGCATAGTTGCTGCATCCAGTGGCCTTCTTTTTGGATATGACATCGGAATTTCAGGAGGTGTCACCACCATGAAGCCATTTCTTAAAAAATTCTTCCCAGACATTCTTAGAAAGGCAGCTGGTACTAAGGTGAACATGTATTGTGTGTATGATAGTCAAATATTGACATTATTCACATCTTCTCATTATCTAGCTGGATTTGTGTCGTCACTTGTGGCTAGCAAAGCTACGACGATGTTTGGTCGGAGAAACGTCATCATAATAGGTGGTATTGTCTTCCTTGCTGGTGGTGCCATTAACGGAGGTTCTAAAAATATTCCTATGCTTATCTTGGGTCGTGTTCTTCTTGGGTTAGGTGTCGGTTTCACTAATCAAGCTGCACCATTGTACCTATCTGAAGTTGCTCCACCAAAATGGCGAGGCGCTTTGAGCACAAGCTTCCCATTCTTTTTGGGAGTTGGTATAATCTTTGCAGGTTGCATAAACTATGGCACTGCCAAGCACACATGGGGATGGAGACTATCTCTTGGACTTGCAGTTGTGCCTGGAGCTGTAATTACCATTGGTGCCTTCCTCATAACTGACACGCCCAACAGCTTAGTCGAACGTGGTAAGATAGAGCAAGCCAAAAAAGCATTACATAAAATCAGAGGATCCTCCATTGATATTCAACCTGAGTTAGAAGAACTTATTAAGTCAACAAAAATTGCAAAATCAGTGCAGCAAGAACCCTTTAAAACCATATTAAAAAGGGAATATAGACCTCAGTTGGTGATGGCATTTGCAATCCCCTTTTTCCAACAAGTTACAGGGATAAACGTAGTCACTTTCTATTCACCTAACCTCTTTAGATCTTTAGGTTTGGGACACAATGCTGCTTTACTTTCTGCCATTCTACTTGGAGTTGTTAAACTTGCATCTATCCTCATCTCTTCTAGTGTTATTGATCGATTTGGTCGAAGATTCTTGTTCGTTACTGGGGGTATTATCATGTCTATATGCTTGCTTGCGGTGTCCATTGTGCTGGCAGTGGTAGCTGGTGTTCATGGTACAAATGACATATCAAAAGGCAATGCAATATTGGTATTGATTTTACTATGTTTCTATGCTGCGGGTTTTGGTTTATCATGGAGCCCTCTAGCATGGCTAATTCCAGCTGAGATTTTTCCCGTAAATATAAGAAGCACTGGACAAAGCATAGCTGTTGCTGTGCATTTCATAATGGAATTTGTGTTATCGCAAACATTCTTGACTATGTTATGCCACTTTAAGTTCGGGGCATTTTTGTTCTATGCTGGTTGGGTTGTTGTGATGACTCTTTTCATTATATTTTTCTTGCCGGAGACTAAAGGAATTGCTTTGGAGTCAATGCACATCATATGGGGTAAACATTGGTTTTGGTATCGGTTTGTTAAAGGAGAAGATGGAGAAGGAAATCGTCCATGA

Protein sequence

>Msa0418190

MAGGGFSMDTQVTATNFGGKLTLSIIISCIVAASSGLLFGYDIGISGGVTTMKPFLKKFFPDILRKAAGTKVNMYCVYDSQILTLFTSSHYLAGFVSSLVASKATTMFGRRNVIIIGGIVFLAGGAINGGSKNIPMLILGRVLLGLGVGFTNQAAPLYLSEVAPPKWRGALSTSFPFFLGVGIIFAGCINYGTAKHTWGWRLSLGLAVVPGAVITIGAFLITDTPNSLVERGKIEQAKKALHKIRGSSIDIQPELEELIKSTKIAKSVQQEPFKTILKREYRPQLVMAFAIPFFQQVTGINVVTFYSPNLFRSLGLGHNAALLSAILLGVVKLASILISSSVIDRFGRRFLFVTGGIIMSICLLAVSIVLAVVAGVHGTNDISKGNAILVLILLCFYAAGFGLSWSPLAWLIPAEIFPVNIRSTGQSIAVAVHFIMEFVLSQTFLTMLCHFKFGAFLFYAGWVVVMTLFIIFFLPETKGIALESMHIIWGKHWFWYRFVKGEDGEGNRP*