AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115630 MtrunA17_Chr1g0212251 95.310 533 14 3 1 523 1 532 0.0 1041
Msa0115630 MtrunA17_Chr1g0212201 82.772 534 79 6 1 523 5 536 0.0 895
Msa0115630 MtrunA17_Chr1g0212291 80.000 535 89 6 3 522 4 535 0.0 850
Msa0115630 MtrunA17_Chr4g0054741 59.623 530 192 7 5 523 16 534 0.0 581
Msa0115630 MtrunA17_Chr5g0400471 55.319 470 164 8 93 523 3 465 5.35e-155 450
Msa0115630 MtrunA17_Chr4g0054771 57.576 396 152 6 132 523 3 386 1.05e-147 429
Msa0115630 MtrunA17_Chr1g0188871 41.775 383 204 6 10 383 23 395 5.55e-95 296
Msa0115630 MtrunA17_Chr1g0188881 40.634 347 190 5 33 369 48 388 8.44e-87 276
Msa0115630 MtrunA17_Chr4g0025591 42.216 334 177 3 23 342 20 351 7.95e-84 268
Msa0115630 MtrunA17_Chr7g0267471 41.908 346 189 3 32 369 37 378 2.57e-79 256
Msa0115630 MtrunA17_Chr7g0259731 40.256 313 171 5 42 343 61 368 8.14e-77 248
Msa0115630 MtrunA17_Chr2g0321971 41.009 317 173 3 37 343 37 349 1.22e-74 243
Msa0115630 MtrunA17_Chr8g0390931 31.161 491 294 9 37 489 59 543 2.99e-74 245
Msa0115630 MtrunA17_Chr6g0484691 31.801 522 307 12 14 489 58 576 3.08e-71 238
Msa0115630 MtrunA17_Chr2g0321961 37.166 374 218 7 11 371 8 377 8.90e-70 230
Msa0115630 MtrunA17_Chr1g0210101 33.333 480 287 12 35 489 111 582 1.26e-68 231
Msa0115630 MtrunA17_Chr8g0390921 29.719 498 303 10 36 489 59 553 1.69e-64 219
Msa0115630 MtrunA17_Chr8g0390901 28.082 438 275 7 91 489 9 445 1.06e-54 191
Msa0115630 MtrunA17_Chr4g0054761 64.122 131 46 1 5 134 16 146 4.55e-35 129
Msa0115630 MtrunA17_Chr5g0400481 60.256 78 31 0 15 92 35 112 1.89e-25 100
Msa0115630 MtrunA17_Chr1g0209601 81.633 49 8 1 10 58 5 52 1.44e-18 79.7
Msa0115630 MtrunA17_Chr8g0390911 41.333 75 43 1 19 92 46 120 1.50e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115630 AT4G17970.1 56.604 530 176 9 23 507 29 549 0.0 568
Msa0115630 AT5G46610.1 56.699 515 190 11 23 507 24 535 0.0 553
Msa0115630 AT5G46600.1 55.020 498 190 6 27 490 29 526 0.0 521
Msa0115630 AT5G46610.2 52.427 515 188 12 23 507 24 511 1.31e-170 492
Msa0115630 AT5G46610.3 51.378 508 181 11 23 507 24 488 2.59e-163 473
Msa0115630 AT4G00910.1 34.845 485 252 9 24 497 46 477 7.20e-96 300
Msa0115630 AT1G08440.1 40.401 349 185 6 37 369 13 354 3.46e-77 251
Msa0115630 AT3G11680.1 38.692 367 205 5 19 369 11 373 1.83e-73 241
Msa0115630 AT3G11680.2 38.692 367 205 5 19 369 13 375 1.96e-73 241
Msa0115630 AT1G08430.1 38.905 347 196 6 37 369 13 357 4.69e-71 235
Msa0115630 AT3G18440.1 32.347 507 281 14 33 489 75 569 5.13e-71 238
Msa0115630 AT1G18420.1 31.418 522 304 14 19 489 59 577 2.35e-69 233
Msa0115630 AT2G27240.2 39.377 353 186 6 37 374 13 352 6.93e-69 229
Msa0115630 AT1G18420.2 31.791 497 291 13 38 489 1 494 1.38e-67 226
Msa0115630 AT2G27240.1 37.903 372 191 7 37 374 13 378 4.95e-66 222
Msa0115630 AT2G17470.1 29.607 483 306 9 37 489 31 509 6.11e-64 218
Msa0115630 AT2G17470.2 29.607 483 306 9 37 489 53 531 6.76e-64 218
Msa0115630 AT1G25480.1 29.492 512 314 13 11 489 44 541 8.84e-64 217
Msa0115630 AT1G68600.1 29.675 492 307 13 35 492 46 532 7.59e-61 209
Msa0115630 AT4G17585.1 65.714 70 19 2 23 91 29 94 3.58e-22 93.6

Find 112 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAGTTCTTCTTTATATA+AGG 0.196610 1_3:+34568282 None:intergenic
CTTGTAAGAGTTGGGAGTTC+TGG 0.199314 1_3:+34566820 None:intergenic
AATAATGACTTGCCTTCTTA+TGG 0.217309 1_3:-34566443 Msa0115630:CDS
AACAGGCTTTGCAAGCAAAT+TGG 0.235701 1_3:-34567656 Msa0115630:intron
GTTCAATGAGGAAGACAATT+TGG 0.238099 1_3:-34569017 Msa0115630:CDS
AAAGAATGGACCACCCTTCT+AGG 0.250395 1_3:+34568976 None:intergenic
TGATACAATTATCAAATTAA+AGG 0.250489 1_3:+34568233 None:intergenic
TGTATCTTTGTTGTATCTAA+TGG 0.253001 1_3:-34568929 Msa0115630:CDS
CACCTCACCTTCTATAGATT+TGG 0.256739 1_3:+34568053 None:intergenic
AGTTCTTCCCCTGACCAATT+TGG 0.278883 1_3:+34568111 None:intergenic
GCCTGTTTGTATTTCCAAAT+TGG 0.285143 1_3:-34568125 Msa0115630:CDS
TTGTTTGCAGTCTGAAATTC+AGG 0.286362 1_3:-34567529 Msa0115630:intron
GATCACTGGCATTCTTTATT+CGG 0.298061 1_3:-34568671 Msa0115630:CDS
CATAGTTCTTCTTTATATAA+GGG 0.308076 1_3:+34568283 None:intergenic
TCTTTGGATTTGCTTCCAAC+TGG 0.308611 1_3:+34566743 None:intergenic
CTACAACAGTGTAACTAAAA+TGG 0.318625 1_3:+34567562 None:intergenic
TCCTTCAAGCTTTGATATAG+TGG 0.320167 1_3:+34568080 None:intergenic
TTGTTCTCGGAAATGCTCTT+TGG 0.330117 1_3:+34566727 None:intergenic
ATAAAGAAGAACTATGACTA+TGG 0.360195 1_3:-34568276 Msa0115630:CDS
TATAAAGTGAAAAGATTTCC+AGG 0.365738 1_3:-34569039 Msa0115630:CDS
TCTATTTAGTCCTTTGCATA+AGG 0.376876 1_3:+34568716 None:intergenic
ACAGGCTTTGCAAGCAAATT+GGG 0.389099 1_3:-34567655 Msa0115630:intron
TTTGTATTTCCAAATTGGTC+AGG 0.391446 1_3:-34568120 Msa0115630:CDS
TTGTAAGAGTTGGGAGTTCT+GGG 0.392247 1_3:+34566821 None:intergenic
AGGAAGACAATTTGGAAGGT+TGG 0.392414 1_3:-34569009 Msa0115630:CDS
ATGTATGAAGTTGAAGAATT+GGG 0.394893 1_3:-34566560 Msa0115630:CDS
CTTTGGATTTGCTTCCAACT+GGG 0.400585 1_3:+34566744 None:intergenic
TCTTCAAGCTTGTAAGAGTT+GGG 0.401192 1_3:+34566812 None:intergenic
TTCTTCAAGCTTGTAAGAGT+TGG 0.405902 1_3:+34566811 None:intergenic
GTTCGAGCCTAGTAAAAGTT+GGG 0.406315 1_3:+34566871 None:intergenic
GCCTAGTAAAAGTTGGGGTT+GGG 0.408934 1_3:+34566877 None:intergenic
TATGTATGAAGTTGAAGAAT+TGG 0.411224 1_3:-34566561 Msa0115630:CDS
TGGCAGCATCTTGAGTATCT+TGG 0.414116 1_3:+34567630 None:intergenic
TTGGAAAAGATGATCCTAGA+AGG 0.428022 1_3:-34568990 Msa0115630:CDS
CAAAGGACTAAATAGAGGAT+TGG 0.434235 1_3:-34568709 Msa0115630:CDS
CATGACTGTGGTTGTGGTCA+TGG 0.437773 1_3:-34568863 Msa0115630:CDS
GGCTGTCATGACTGTGGTTG+TGG 0.441242 1_3:-34568869 Msa0115630:CDS
AAGAAGTATCAAAAGTACTA+AGG 0.444292 1_3:-34567000 Msa0115630:CDS
TAATGGAGCCATTGTTCAAA+GGG 0.447359 1_3:-34568912 Msa0115630:CDS
GCTTTGATATAGTGGATTTG+TGG 0.447467 1_3:+34568088 None:intergenic
TGTTGAGGCCACAACTTAGT+AGG 0.449035 1_3:-34566676 Msa0115630:CDS
GGATTGGGAACTTTGTTAGC+AGG 0.453883 1_3:-34568693 Msa0115630:CDS
CACTTCGTTGCTAGTGGAGA+TGG 0.457941 1_3:-34566603 Msa0115630:CDS
CAAGACCAACTTTCAAAGAA+TGG 0.458957 1_3:+34568962 None:intergenic
ACCAATTTGGAAATACAAAC+AGG 0.460157 1_3:+34568124 None:intergenic
TCCACTATATCAAAGCTTGA+AGG 0.461364 1_3:-34568081 Msa0115630:CDS
CTTAGATTTAGAGTCTAAAA+CGG 0.461552 1_3:+34567817 None:intergenic
AGCCTAGTAAAAGTTGGGGT+TGG 0.463368 1_3:+34566876 None:intergenic
ATCAAAAGTACTAAGGGTAA+TGG 0.464081 1_3:-34566993 Msa0115630:CDS
AAAGGACTAAATAGAGGATT+GGG 0.468039 1_3:-34568708 Msa0115630:CDS
GGGTAATGGCCAACAGCATA+AGG 0.474387 1_3:-34566979 Msa0115630:CDS
GTGGTCCATTCTTTGAAAGT+TGG 0.480077 1_3:-34568967 Msa0115630:CDS
AAGACCAACGCCTATGCATA+TGG 0.480102 1_3:+34568161 None:intergenic
TGTTCGAGCCTAGTAAAAGT+TGG 0.480883 1_3:+34566870 None:intergenic
ATTGTCTTCCTCATTGAACC+TGG 0.484243 1_3:+34569021 None:intergenic
CTATGAGAAGCTCAAGCCAT+TGG 0.485104 1_3:-34569083 Msa0115630:CDS
AACTTTGTTAGCAGGATCAC+TGG 0.488085 1_3:-34568685 Msa0115630:CDS
TTGATAATGTCTGGAGCATT+GGG 0.488169 1_3:-34568200 Msa0115630:CDS
GGATTAGCCAAATCTATAGA+AGG 0.492362 1_3:-34568060 Msa0115630:intron
AATTATTCTGCTCCATAAGA+AGG 0.495731 1_3:+34566431 None:intergenic
TACACTGTTGTAGCACTACA+TGG 0.500604 1_3:-34567552 Msa0115630:CDS
GTTGATAATGTCTGGAGCAT+TGG 0.501192 1_3:-34568201 Msa0115630:CDS
ATTGTTTGAGAGTATTTGAA+GGG 0.502348 1_3:+34566940 None:intergenic
TCCCCTATCCCTTTGAACAA+TGG 0.508398 1_3:+34568904 None:intergenic
AACGAAGTGAATGCAGCAAA+GGG 0.509112 1_3:+34566617 None:intergenic
CAATGATGCAGTTTCTGTCA+TGG 0.510953 1_3:-34567912 Msa0115630:intron
CGGTATCTTGCAGATGTCCC+TGG 0.513392 1_3:-34568651 Msa0115630:CDS
AGCCATTGTTCAAAGGGATA+GGG 0.514220 1_3:-34568906 Msa0115630:CDS
TTTGGATTTGCTTCCAACTG+GGG 0.518335 1_3:+34566745 None:intergenic
GAGCCATTGTTCAAAGGGAT+AGG 0.519040 1_3:-34568907 Msa0115630:CDS
TGCATTCACTTCGTTGCTAG+TGG 0.521899 1_3:-34566609 Msa0115630:CDS
GTTACCGTGTTGATAATGTC+TGG 0.522501 1_3:-34568209 Msa0115630:CDS
GATTGTTTGAGAGTATTTGA+AGG 0.526199 1_3:+34566939 None:intergenic
TTATGCAAAGGACTAAATAG+AGG 0.533332 1_3:-34568714 Msa0115630:CDS
GTAAGAGTTGGGAGTTCTGG+GGG 0.534113 1_3:+34566823 None:intergenic
AATGAGGAAGACAATTTGGA+AGG 0.534245 1_3:-34569013 Msa0115630:CDS
AACTGTAAAATGATTTCCAA+TGG 0.536056 1_3:+34569067 None:intergenic
TGTATGAAGTTGAAGAATTG+GGG 0.537748 1_3:-34566559 Msa0115630:CDS
TTGTATTTCCAAATTGGTCA+GGG 0.538163 1_3:-34568119 Msa0115630:CDS
GTGGTCATGGAGTTCACTGC+AGG 0.547514 1_3:-34568850 Msa0115630:intron
AGAAGTATCAAAAGTACTAA+GGG 0.552208 1_3:-34566999 Msa0115630:CDS
CTAATGGAGCCATTGTTCAA+AGG 0.553954 1_3:-34568913 Msa0115630:CDS
AGTGATTGTTGTTCCCCAGT+TGG 0.554267 1_3:-34566758 Msa0115630:CDS
CAACGAAGTGAATGCAGCAA+AGG 0.559342 1_3:+34566616 None:intergenic
TGTAAGAGTTGGGAGTTCTG+GGG 0.559414 1_3:+34566822 None:intergenic
GCCATTGTTCAAAGGGATAG+GGG 0.568486 1_3:-34568905 Msa0115630:CDS
GTAGTGCTTCTGAGAACTCA+AGG 0.568913 1_3:+34566639 None:intergenic
TGGCAGCAATATGCAAAAGT+AGG 0.572216 1_3:-34567597 Msa0115630:CDS
TAAATCTAAGGATGAAACAC+TGG 0.575893 1_3:-34567804 Msa0115630:intron
AGAAGAACATGTACACAAGA+AGG 0.577236 1_3:-34566699 Msa0115630:CDS
GATACTCAAGATGCTGCCAC+AGG 0.577743 1_3:-34567626 Msa0115630:CDS
ATGATAATCCTACTAAGTTG+TGG 0.580977 1_3:+34566668 None:intergenic
GATAGGGGAAAATGCTATGT+GGG 0.584985 1_3:-34568890 Msa0115630:CDS
TTCGAGCCTAGTAAAAGTTG+GGG 0.596082 1_3:+34566872 None:intergenic
CGCATCTATACCATATGCAT+AGG 0.596530 1_3:-34568171 Msa0115630:CDS
TATACCATATGCATAGGCGT+TGG 0.599123 1_3:-34568165 Msa0115630:CDS
GATGCTGCCACAGGATCCCA+TGG 0.602281 1_3:-34567617 Msa0115630:CDS
GGATAGGGGAAAATGCTATG+TGG 0.611521 1_3:-34568891 Msa0115630:CDS
ATAAGGGATGAATCTGACAT+AGG 0.613359 1_3:+34568299 None:intergenic
TTCGTTGCTAGTGGAGATGG+TGG 0.621421 1_3:-34566600 Msa0115630:CDS
TGGAAAAGATGATCCTAGAA+GGG 0.623581 1_3:-34568989 Msa0115630:CDS
TATAGATCACGTATTGACCT+CGG 0.624873 1_3:+34567049 None:intergenic
AAAGATTTCCAGGTTCAATG+AGG 0.626343 1_3:-34569029 Msa0115630:CDS
ATTGCTGCCATGGGATCCTG+TGG 0.629583 1_3:+34567610 None:intergenic
AGCAAATGATGATTCATCTG+AGG 0.634254 1_3:-34567864 Msa0115630:CDS
TGTATTTCCAAATTGGTCAG+GGG 0.647968 1_3:-34568118 Msa0115630:CDS
ATGTACACAAGAAGGTGTTG+AGG 0.684367 1_3:-34566691 Msa0115630:CDS
AAAAGATGATCCTAGAAGGG+TGG 0.690795 1_3:-34568986 Msa0115630:CDS
TGCTCCAGACATTATCAACA+CGG 0.699701 1_3:+34568205 None:intergenic
TATGTGGGCTGTCATGACTG+TGG 0.700236 1_3:-34568875 Msa0115630:CDS
TCTCATTTACAAGTGCTACG+AGG 0.756572 1_3:-34567840 Msa0115630:CDS
TATGATTCATGAAGACACCG+AGG 0.800142 1_3:-34567066 Msa0115630:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAAAATAGAAG+GGG + chr1_3:34567801-34567820 None:intergenic 10.0%
!! CAAAAAAATAAAAAAATAGA+AGG + chr1_3:34567803-34567822 None:intergenic 10.0%
!! TTAAATAATATGTAAGTTAA+AGG + chr1_3:34568447-34568466 None:intergenic 10.0%
!! TATTCTTACTAATGAATAAT+CGG + chr1_3:34567090-34567109 None:intergenic 15.0%
!! TGATACAATTATCAAATTAA+AGG + chr1_3:34567305-34567324 None:intergenic 15.0%
!! ATATTCAATTATAAAGATTG+AGG + chr1_3:34567598-34567617 None:intergenic 15.0%
!!! TTATCAACTATATTCATTTT+TGG + chr1_3:34569074-34569093 None:intergenic 15.0%
!!! ATTTTTCATGCAATTTTCAT+CGG - chr1_3:34566911-34566930 Msa0115630:CDS 20.0%
!! ATTCTTACTAATGAATAATC+GGG + chr1_3:34567089-34567108 None:intergenic 20.0%
!! TTATTCATTAGTAAGAATAG+AGG - chr1_3:34567091-34567110 Msa0115630:intron 20.0%
!! CATAGTTCTTCTTTATATAA+GGG + chr1_3:34567255-34567274 None:intergenic 20.0%
!! TCATAGTTCTTCTTTATATA+AGG + chr1_3:34567256-34567275 None:intergenic 20.0%
!!! AACTTAAGCAATTTTCTTTA+AGG + chr1_3:34567539-34567558 None:intergenic 20.0%
!! ATACTTTACTTGACAAAAAA+AGG + chr1_3:34567768-34567787 None:intergenic 20.0%
!!! TGAAAAAGTATATCAGAAAT+TGG - chr1_3:34567821-34567840 Msa0115630:CDS 20.0%
!!! GAAAGTCATTTTTAAACTAA+AGG + chr1_3:34568403-34568422 None:intergenic 20.0%
!!! ATGACTTTCTTATTTGATTT+TGG - chr1_3:34568414-34568433 Msa0115630:intron 20.0%
! AACTGTAAAATGATTTCCAA+TGG + chr1_3:34566471-34566490 None:intergenic 25.0%
! TATAAAGTGAAAAGATTTCC+AGG - chr1_3:34566496-34566515 Msa0115630:CDS 25.0%
!! TGTATCTTTGTTGTATCTAA+TGG - chr1_3:34566606-34566625 Msa0115630:CDS 25.0%
! AACTTCATAGGTATTAATGA+AGG - chr1_3:34566773-34566792 Msa0115630:CDS 25.0%
! AAGGATCAATTATGATTGTA+GGG - chr1_3:34566792-34566811 Msa0115630:CDS 25.0%
! TTCTTACTAATGAATAATCG+GGG + chr1_3:34567088-34567107 None:intergenic 25.0%
! ATAAAGAAGAACTATGACTA+TGG - chr1_3:34567259-34567278 Msa0115630:intron 25.0%
!! CTTAGATTTAGAGTCTAAAA+CGG + chr1_3:34567721-34567740 None:intergenic 25.0%
! AATCAAAAAAATGCAGCTAT+CGG + chr1_3:34568071-34568090 None:intergenic 25.0%
! TTAATTCCTAGTCATACAAA+TGG - chr1_3:34568112-34568131 Msa0115630:CDS 25.0%
!!! AAGAAGTATCAAAAGTACTA+AGG - chr1_3:34568535-34568554 Msa0115630:intron 25.0%
!!! AGAAGTATCAAAAGTACTAA+GGG - chr1_3:34568536-34568555 Msa0115630:intron 25.0%
!!! ATTGTTTGAGAGTATTTGAA+GGG + chr1_3:34568598-34568617 None:intergenic 25.0%
! TATGTATGAAGTTGAAGAAT+TGG - chr1_3:34568974-34568993 Msa0115630:CDS 25.0%
! ATGTATGAAGTTGAAGAATT+GGG - chr1_3:34568975-34568994 Msa0115630:CDS 25.0%
GAAGGATCAATTATGATTGT+AGG - chr1_3:34566791-34566810 Msa0115630:CDS 30.0%
AGGATCAATTATGATTGTAG+GGG - chr1_3:34566793-34566812 Msa0115630:CDS 30.0%
TCTATTTAGTCCTTTGCATA+AGG + chr1_3:34566822-34566841 None:intergenic 30.0%
TTATGCAAAGGACTAAATAG+AGG - chr1_3:34566821-34566840 Msa0115630:CDS 30.0%
AAAGGACTAAATAGAGGATT+GGG - chr1_3:34566827-34566846 Msa0115630:CDS 30.0%
TTGCATGAAAAATTTGACCA+GGG + chr1_3:34566904-34566923 None:intergenic 30.0%
ATTGCATGAAAAATTTGACC+AGG + chr1_3:34566905-34566924 None:intergenic 30.0%
AAATGCACTGTTAATAAACC+AGG + chr1_3:34566975-34566994 None:intergenic 30.0%
AATTATGAGAGAAGCTCAAT+TGG - chr1_3:34567028-34567047 Msa0115630:CDS 30.0%
!! AATCGGGGTTTTAATATCTT+TGG + chr1_3:34567073-34567092 None:intergenic 30.0%
! AAATTTTATGTCCTGTGACT+CGG - chr1_3:34567159-34567178 Msa0115630:intron 30.0%
ACCAATTTGGAAATACAAAC+AGG + chr1_3:34567414-34567433 None:intergenic 30.0%
TTTGTATTTCCAAATTGGTC+AGG - chr1_3:34567415-34567434 Msa0115630:intron 30.0%
TTGTATTTCCAAATTGGTCA+GGG - chr1_3:34567416-34567435 Msa0115630:intron 30.0%
!! CGTTTTAGACTCTAAATCTA+AGG - chr1_3:34567719-34567738 Msa0115630:intron 30.0%
TAAATCTAAGGATGAAACAC+TGG - chr1_3:34567731-34567750 Msa0115630:intron 30.0%
CTCATTGTTTCGAAATAAAC+AGG - chr1_3:34567862-34567881 Msa0115630:CDS 30.0%
CTACAACAGTGTAACTAAAA+TGG + chr1_3:34567976-34567995 None:intergenic 30.0%
ATCAAAAAAATGCAGCTATC+GGG + chr1_3:34568070-34568089 None:intergenic 30.0%
CAATTACCATTTGTATGACT+AGG + chr1_3:34568121-34568140 None:intergenic 30.0%
! GATGAATCTTATTTGACAAG+TGG + chr1_3:34568209-34568228 None:intergenic 30.0%
AAGATTCATCATTTAGATCC+TGG - chr1_3:34568219-34568238 Msa0115630:CDS 30.0%
! TGTGCTATTAATAAGATCAC+AGG + chr1_3:34568249-34568268 None:intergenic 30.0%
GTGATCTTATTAATAGCACA+TGG - chr1_3:34568249-34568268 Msa0115630:CDS 30.0%
TAGCATCTGAATAATGTTCA+AGG - chr1_3:34568317-34568336 Msa0115630:intron 30.0%
!! ATCAAAAGTACTAAGGGTAA+TGG - chr1_3:34568542-34568561 Msa0115630:intron 30.0%
!! GATTGTTTGAGAGTATTTGA+AGG + chr1_3:34568599-34568618 None:intergenic 30.0%
!! GTTCTTCTTTTGTTTGTTCT+CGG + chr1_3:34568824-34568843 None:intergenic 30.0%
ATGATAATCCTACTAAGTTG+TGG + chr1_3:34568870-34568889 None:intergenic 30.0%
TGTATGAAGTTGAAGAATTG+GGG - chr1_3:34568976-34568995 Msa0115630:CDS 30.0%
! AATAATGACTTGCCTTCTTA+TGG - chr1_3:34569092-34569111 Msa0115630:CDS 30.0%
AAAGATTTCCAGGTTCAATG+AGG - chr1_3:34566506-34566525 Msa0115630:CDS 35.0%
GTTCAATGAGGAAGACAATT+TGG - chr1_3:34566518-34566537 Msa0115630:CDS 35.0%
AATGAGGAAGACAATTTGGA+AGG - chr1_3:34566522-34566541 Msa0115630:CDS 35.0%
TTGGAAAAGATGATCCTAGA+AGG - chr1_3:34566545-34566564 Msa0115630:CDS 35.0%
TGGAAAAGATGATCCTAGAA+GGG - chr1_3:34566546-34566565 Msa0115630:CDS 35.0%
CAAGACCAACTTTCAAAGAA+TGG + chr1_3:34566576-34566595 None:intergenic 35.0%
TAATGGAGCCATTGTTCAAA+GGG - chr1_3:34566623-34566642 Msa0115630:CDS 35.0%
GGATCAATTATGATTGTAGG+GGG - chr1_3:34566794-34566813 Msa0115630:CDS 35.0%
CAAAGGACTAAATAGAGGAT+TGG - chr1_3:34566826-34566845 Msa0115630:CDS 35.0%
GATCACTGGCATTCTTTATT+CGG - chr1_3:34566864-34566883 Msa0115630:CDS 35.0%
!!! GGTGCTGCAGTTTTTATTTT+AGG - chr1_3:34566932-34566951 Msa0115630:CDS 35.0%
ATAAGGGATGAATCTGACAT+AGG + chr1_3:34567239-34567258 None:intergenic 35.0%
!! TTGATAATGTCTGGAGCATT+GGG - chr1_3:34567335-34567354 Msa0115630:intron 35.0%
GCCTGTTTGTATTTCCAAAT+TGG - chr1_3:34567410-34567429 Msa0115630:intron 35.0%
TGTATTTCCAAATTGGTCAG+GGG - chr1_3:34567417-34567436 Msa0115630:intron 35.0%
!! GCTTTGATATAGTGGATTTG+TGG + chr1_3:34567450-34567469 None:intergenic 35.0%
TCCACTATATCAAAGCTTGA+AGG - chr1_3:34567454-34567473 Msa0115630:intron 35.0%
! TCCTTCAAGCTTTGATATAG+TGG + chr1_3:34567458-34567477 None:intergenic 35.0%
!! GGATTAGCCAAATCTATAGA+AGG - chr1_3:34567475-34567494 Msa0115630:intron 35.0%
! TCTTTAAGGAAGTCATGATC+TGG + chr1_3:34567525-34567544 None:intergenic 35.0%
AGCAAATGATGATTCATCTG+AGG - chr1_3:34567671-34567690 Msa0115630:intron 35.0%
! TTGTTTGCAGTCTGAAATTC+AGG - chr1_3:34568006-34568025 Msa0115630:intron 35.0%
AATAAGATCACAGGTAATCC+AGG + chr1_3:34568240-34568259 None:intergenic 35.0%
! TATAGATCACGTATTGACCT+CGG + chr1_3:34568489-34568508 None:intergenic 35.0%
!!! ATGCTTTTTCCTTATGCTGT+TGG + chr1_3:34568568-34568587 None:intergenic 35.0%
TCTTCAAGCTTGTAAGAGTT+GGG + chr1_3:34568726-34568745 None:intergenic 35.0%
TTCTTCAAGCTTGTAAGAGT+TGG + chr1_3:34568727-34568746 None:intergenic 35.0%
AGAAGAACATGTACACAAGA+AGG - chr1_3:34568836-34568855 Msa0115630:intron 35.0%
ATTGTCTTCCTCATTGAACC+TGG + chr1_3:34566517-34566536 None:intergenic 40.0%
AGGAAGACAATTTGGAAGGT+TGG - chr1_3:34566526-34566545 Msa0115630:CDS 40.0%
AAAAGATGATCCTAGAAGGG+TGG - chr1_3:34566549-34566568 Msa0115630:CDS 40.0%
! GTGGTCCATTCTTTGAAAGT+TGG - chr1_3:34566568-34566587 Msa0115630:CDS 40.0%
CTAATGGAGCCATTGTTCAA+AGG - chr1_3:34566622-34566641 Msa0115630:CDS 40.0%
AGCCATTGTTCAAAGGGATA+GGG - chr1_3:34566629-34566648 Msa0115630:CDS 40.0%
GATAGGGGAAAATGCTATGT+GGG - chr1_3:34566645-34566664 Msa0115630:CDS 40.0%
GTGCTTAGACACAACTTCAT+AGG - chr1_3:34566761-34566780 Msa0115630:CDS 40.0%
AACTTTGTTAGCAGGATCAC+TGG - chr1_3:34566850-34566869 Msa0115630:CDS 40.0%
!! GCAAGCATATTATTGACTCC+TGG - chr1_3:34566954-34566973 Msa0115630:CDS 40.0%
!! CGGGGTTTTAATATCTTTGG+TGG + chr1_3:34567070-34567089 None:intergenic 40.0%
!! GTTACCGTGTTGATAATGTC+TGG - chr1_3:34567326-34567345 Msa0115630:intron 40.0%
TGCTCCAGACATTATCAACA+CGG + chr1_3:34567333-34567352 None:intergenic 40.0%
!! GTTGATAATGTCTGGAGCAT+TGG - chr1_3:34567334-34567353 Msa0115630:intron 40.0%
CGCATCTATACCATATGCAT+AGG - chr1_3:34567364-34567383 Msa0115630:intron 40.0%
TATACCATATGCATAGGCGT+TGG - chr1_3:34567370-34567389 Msa0115630:intron 40.0%
AGCCAAATCTATAGAAGGTG+AGG - chr1_3:34567480-34567499 Msa0115630:intron 40.0%
CACCTCACCTTCTATAGATT+TGG + chr1_3:34567485-34567504 None:intergenic 40.0%
! GAGGTGAACTTTGAGAAACA+AGG - chr1_3:34567499-34567518 Msa0115630:intron 40.0%
CAATGATGCAGTTTCTGTCA+TGG - chr1_3:34567623-34567642 Msa0115630:CDS 40.0%
TCTCATTTACAAGTGCTACG+AGG - chr1_3:34567695-34567714 Msa0115630:intron 40.0%
AACAGGCTTTGCAAGCAAAT+TGG - chr1_3:34567879-34567898 Msa0115630:CDS 40.0%
ACAGGCTTTGCAAGCAAATT+GGG - chr1_3:34567880-34567899 Msa0115630:CDS 40.0%
! CTTTTGCATATTGCTGCCAT+GGG + chr1_3:34567937-34567956 None:intergenic 40.0%
! ACTTTTGCATATTGCTGCCA+TGG + chr1_3:34567938-34567957 None:intergenic 40.0%
TGGCAGCAATATGCAAAAGT+AGG - chr1_3:34567938-34567957 Msa0115630:intron 40.0%
TACACTGTTGTAGCACTACA+TGG - chr1_3:34567983-34568002 Msa0115630:intron 40.0%
! TCGGTGTCTTCATGAATCAT+AGG + chr1_3:34568470-34568489 None:intergenic 40.0%
TATGATTCATGAAGACACCG+AGG - chr1_3:34568469-34568488 Msa0115630:intron 40.0%
!! GGGATTTTAACACACTGTCA+AGG + chr1_3:34568641-34568660 None:intergenic 40.0%
TTCGAGCCTAGTAAAAGTTG+GGG + chr1_3:34568666-34568685 None:intergenic 40.0%
GTTCGAGCCTAGTAAAAGTT+GGG + chr1_3:34568667-34568686 None:intergenic 40.0%
TGTTCGAGCCTAGTAAAAGT+TGG + chr1_3:34568668-34568687 None:intergenic 40.0%
! CTTTTACTAGGCTCGAACAA+TGG - chr1_3:34568669-34568688 Msa0115630:CDS 40.0%
TTGTAAGAGTTGGGAGTTCT+GGG + chr1_3:34568717-34568736 None:intergenic 40.0%
! TTTGGATTTGCTTCCAACTG+GGG + chr1_3:34568793-34568812 None:intergenic 40.0%
! CTTTGGATTTGCTTCCAACT+GGG + chr1_3:34568794-34568813 None:intergenic 40.0%
! TCTTTGGATTTGCTTCCAAC+TGG + chr1_3:34568795-34568814 None:intergenic 40.0%
TTGTTCTCGGAAATGCTCTT+TGG + chr1_3:34568811-34568830 None:intergenic 40.0%
!! ATGTACACAAGAAGGTGTTG+AGG - chr1_3:34568844-34568863 Msa0115630:intron 40.0%
AACGAAGTGAATGCAGCAAA+GGG + chr1_3:34568921-34568940 None:intergenic 40.0%
CTATGAGAAGCTCAAGCCAT+TGG - chr1_3:34566452-34566471 Msa0115630:CDS 45.0%
AAAGAATGGACCACCCTTCT+AGG + chr1_3:34566562-34566581 None:intergenic 45.0%
GAGCCATTGTTCAAAGGGAT+AGG - chr1_3:34566628-34566647 Msa0115630:CDS 45.0%
GCCATTGTTCAAAGGGATAG+GGG - chr1_3:34566630-34566649 Msa0115630:CDS 45.0%
TCCCCTATCCCTTTGAACAA+TGG + chr1_3:34566634-34566653 None:intergenic 45.0%
GGATAGGGGAAAATGCTATG+TGG - chr1_3:34566644-34566663 Msa0115630:CDS 45.0%
GGATTGGGAACTTTGTTAGC+AGG - chr1_3:34566842-34566861 Msa0115630:CDS 45.0%
CTGAGCCATTGCTTCACTAT+TGG - chr1_3:34567198-34567217 Msa0115630:intron 45.0%
TCCTGCCAATAGTGAAGCAA+TGG + chr1_3:34567206-34567225 None:intergenic 45.0%
AAGACCAACGCCTATGCATA+TGG + chr1_3:34567377-34567396 None:intergenic 45.0%
AGTTCTTCCCCTGACCAATT+TGG + chr1_3:34567427-34567446 None:intergenic 45.0%
TGGCAGCATCTTGAGTATCT+TGG + chr1_3:34567908-34567927 None:intergenic 45.0%
! TCCCAACCCCAACTTTTACT+AGG - chr1_3:34568657-34568676 Msa0115630:CDS 45.0%
GCCTAGTAAAAGTTGGGGTT+GGG + chr1_3:34568661-34568680 None:intergenic 45.0%
AGCCTAGTAAAAGTTGGGGT+TGG + chr1_3:34568662-34568681 None:intergenic 45.0%
TGTAAGAGTTGGGAGTTCTG+GGG + chr1_3:34568716-34568735 None:intergenic 45.0%
CTTGTAAGAGTTGGGAGTTC+TGG + chr1_3:34568718-34568737 None:intergenic 45.0%
! AGTGATTGTTGTTCCCCAGT+TGG - chr1_3:34568777-34568796 Msa0115630:intron 45.0%
TGTTGAGGCCACAACTTAGT+AGG - chr1_3:34568859-34568878 Msa0115630:CDS 45.0%
! GTAGTGCTTCTGAGAACTCA+AGG + chr1_3:34568899-34568918 None:intergenic 45.0%
CAACGAAGTGAATGCAGCAA+AGG + chr1_3:34568922-34568941 None:intergenic 45.0%
TGCATTCACTTCGTTGCTAG+TGG - chr1_3:34568926-34568945 Msa0115630:CDS 45.0%
!! AAAAAAATAAAAAAATAGAA+GGG + chr1_3:34567802-34567821 None:intergenic 5.0%
! TATGTGGGCTGTCATGACTG+TGG - chr1_3:34566660-34566679 Msa0115630:CDS 50.0%
CATGACTGTGGTTGTGGTCA+TGG - chr1_3:34566672-34566691 Msa0115630:CDS 50.0%
GTAGGGGGAACCTTATGCAA+AGG - chr1_3:34566809-34566828 Msa0115630:CDS 50.0%
CATTTGAGAAGCCGAGTCAC+AGG + chr1_3:34567173-34567192 None:intergenic 50.0%
GCCATTGCTTCACTATTGGC+AGG - chr1_3:34567202-34567221 Msa0115630:intron 50.0%
GATACTCAAGATGCTGCCAC+AGG - chr1_3:34567909-34567928 Msa0115630:intron 50.0%
! GGGTAATGGCCAACAGCATA+AGG - chr1_3:34568556-34568575 Msa0115630:intron 50.0%
! GTAAGAGTTGGGAGTTCTGG+GGG + chr1_3:34568715-34568734 None:intergenic 50.0%
CACTTCGTTGCTAGTGGAGA+TGG - chr1_3:34568932-34568951 Msa0115630:CDS 50.0%
TTCGTTGCTAGTGGAGATGG+TGG - chr1_3:34568935-34568954 Msa0115630:CDS 50.0%
GGCTGTCATGACTGTGGTTG+TGG - chr1_3:34566666-34566685 Msa0115630:CDS 55.0%
GTGGTCATGGAGTTCACTGC+AGG - chr1_3:34566685-34566704 Msa0115630:CDS 55.0%
CGGTATCTTGCAGATGTCCC+TGG - chr1_3:34566884-34566903 Msa0115630:CDS 55.0%
ATTGCTGCCATGGGATCCTG+TGG + chr1_3:34567928-34567947 None:intergenic 55.0%
!! TTGGGAGTTCTGGGGGTTCT+GGG + chr1_3:34568708-34568727 None:intergenic 55.0%
GATGCTGCCACAGGATCCCA+TGG - chr1_3:34567918-34567937 Msa0115630:intron 60.0%
!! GTTGGGAGTTCTGGGGGTTC+TGG + chr1_3:34568709-34568728 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34566433 34569124 34566433 ID=Msa0115630;Name=Msa0115630
chr1_3 mRNA 34566433 34569124 34566433 ID=Msa0115630-mRNA-1;Parent=Msa0115630;Name=Msa0115630-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|6|0|523
chr1_3 exon 34568851 34569124 34568851 ID=Msa0115630-mRNA-1:exon:10923;Parent=Msa0115630-mRNA-1
chr1_3 exon 34568625 34568744 34568625 ID=Msa0115630-mRNA-1:exon:10922;Parent=Msa0115630-mRNA-1
chr1_3 exon 34568061 34568333 34568061 ID=Msa0115630-mRNA-1:exon:10921;Parent=Msa0115630-mRNA-1
chr1_3 exon 34567805 34567923 34567805 ID=Msa0115630-mRNA-1:exon:10920;Parent=Msa0115630-mRNA-1
chr1_3 exon 34567530 34567673 34567530 ID=Msa0115630-mRNA-1:exon:10919;Parent=Msa0115630-mRNA-1
chr1_3 exon 34566433 34567074 34566433 ID=Msa0115630-mRNA-1:exon:10918;Parent=Msa0115630-mRNA-1
chr1_3 CDS 34568851 34569124 34568851 ID=Msa0115630-mRNA-1:cds;Parent=Msa0115630-mRNA-1
chr1_3 CDS 34568625 34568744 34568625 ID=Msa0115630-mRNA-1:cds;Parent=Msa0115630-mRNA-1
chr1_3 CDS 34568061 34568333 34568061 ID=Msa0115630-mRNA-1:cds;Parent=Msa0115630-mRNA-1
chr1_3 CDS 34567805 34567923 34567805 ID=Msa0115630-mRNA-1:cds;Parent=Msa0115630-mRNA-1
chr1_3 CDS 34567530 34567673 34567530 ID=Msa0115630-mRNA-1:cds;Parent=Msa0115630-mRNA-1
chr1_3 CDS 34566433 34567074 34566433 ID=Msa0115630-mRNA-1:cds;Parent=Msa0115630-mRNA-1
Gene Sequence

>Msa0115630

ATGGCTGAAACTAACAATACTATGAGAAGCTCAAGCCATTGGAAATCATTTTACAGTTTTGTTTATAAAGTGAAAAGATTTCCAGGTTCAATGAGGAAGACAATTTGGAAGGTTGGAAAAGATGATCCTAGAAGGGTGGTCCATTCTTTGAAAGTTGGTCTTGCTTTGACGCTTGTATCTTTGTTGTATCTAATGGAGCCATTGTTCAAAGGGATAGGGGAAAATGCTATGTGGGCTGTCATGACTGTGGTTGTGGTCATGGAGTTCACTGCAGGGGGAACCTTATGCAAAGGACTAAATAGAGGATTGGGAACTTTGTTAGCAGGATCACTGGCATTCTTTATTCGGTATCTTGCAGATGTCCCTGGTCAAATTTTTCATGCAATTTTCATCGGAGCTGCAGCTACCTATGTCAGATTCATCCCTTATATAAAGAAGAACTATGACTATGGTGTTATGATATTTCTCTTGACCTTTAATTTGATAATTGTATCAAGTTACCGTGTTGATAATGTCTGGAGCATTGGGAAAGATCGCATCTATACCATATGCATAGGCGTTGGTCTTTGTCTTGTTATGAGCCTGTTTGTATTTCCAAATTGGTCAGGGGAAGAACTCCACAAATCCACTATATCAAAGCTTGAAGGATTAGCCAAATCTATAGAAGTTTCTGTCATGGAATATTTTTATGACTCTGAAAAACAAGCAAATGATGATTCATCTGAGGATCTCATTTACAAGTGCTACGAGGCCGTTTTAGACTCTAAATCTAAGGATGAAACACTGGCTTTGCAAGCAAATTGGGAGCCAAGATACTCAAGATGCTGCCACAGGATCCCATGGCAGCAATATGCAAAAGTAGGAGCTGCTCTTCGCCATTTTAGTTACACTGTTGTAGCACTACATGGTTGTTTGCAGTCTGAAATTCAGACACCGAGGTCAATACGTGATCTATACAAAGATTCTTGCATCAAACTTGCACAAGAAGTATCAAAAGTACTAAGGGTAATGGCCAACAGCATAAGGAAAAAGCATCAATTTTCCCTTCAAATACTCTCAAACAATCTTAATGAAGCTTTACAAGACCTTGACAGTGTGTTAAAATCCCAACCCCAACTTTTACTAGGCTCGAACAATGGTCGAAGTCGAACACCCAGAACCCCCAGAACTCCCAACTCTTACAAGCTTGAAGAAGAAAGTAGAATCTTGTTATCACGTGTTAAAAGTGATTGTTGTTCCCCAGTTGGAAGCAAATCCAAAGAGCATTTCCGAGAACAAACAAAAGAAGAACATGTACACAAGAAGGTGTTGAGGCCACAACTTAGTAGGATTATCATCACTAGCCTTGAGTTCTCAGAAGCACTACCCTTTGCTGCATTCACTTCGTTGCTAGTGGAGATGGTGGCAAAACTAGATCATGTTATGTATGAAGTTGAAGAATTGGGGAGAATGTCACATTTTAAAGAGTTTAGAGATGATGATGATAATAATGAGAATATTGTTGTCACTTGTGAGAGACCAAAAATGAATATAGTTGATAATAATGACTTGCCTTCTTATGGAGCAGAATAA

Protein sequence

>Msa0115630

MAETNNTMRSSSHWKSFYSFVYKVKRFPGSMRKTIWKVGKDDPRRVVHSLKVGLALTLVSLLYLMEPLFKGIGENAMWAVMTVVVVMEFTAGGTLCKGLNRGLGTLLAGSLAFFIRYLADVPGQIFHAIFIGAAATYVRFIPYIKKNYDYGVMIFLLTFNLIIVSSYRVDNVWSIGKDRIYTICIGVGLCLVMSLFVFPNWSGEELHKSTISKLEGLAKSIEVSVMEYFYDSEKQANDDSSEDLIYKCYEAVLDSKSKDETLALQANWEPRYSRCCHRIPWQQYAKVGAALRHFSYTVVALHGCLQSEIQTPRSIRDLYKDSCIKLAQEVSKVLRVMANSIRKKHQFSLQILSNNLNEALQDLDSVLKSQPQLLLGSNNGRSRTPRTPRTPNSYKLEEESRILLSRVKSDCCSPVGSKSKEHFREQTKEEHVHKKVLRPQLSRIIITSLEFSEALPFAAFTSLLVEMVAKLDHVMYEVEELGRMSHFKEFRDDDDNNENIVVTCERPKMNIVDNNDLPSYGAE*