AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356030 MtrunA17_Chr8g0344181 92.401 329 19 2 1 323 1 329 0.0 586
Msa1356030 MtrunA17_Chr8g0344191 83.934 305 48 1 1 305 33 336 0.0 523
Msa1356030 MtrunA17_Chr8g0344151 83.498 303 47 1 3 305 4 303 0.0 516
Msa1356030 MtrunA17_Chr2g0310381 40.000 310 168 6 18 315 3 306 2.26e-67 219
Msa1356030 MtrunA17_Chr8g0382901 43.609 266 144 2 38 303 492 751 5.75e-65 220
Msa1356030 MtrunA17_Chr8g0382901 39.384 292 147 6 18 303 5 272 5.36e-56 195
Msa1356030 MtrunA17_Chr2g0310391 38.907 311 176 6 12 315 3 306 6.46e-65 213
Msa1356030 MtrunA17_Chr3g0116681 37.801 291 173 4 14 302 15 299 2.18e-60 201
Msa1356030 MtrunA17_Chr7g0258221 38.870 301 173 4 10 303 6 302 1.87e-57 193
Msa1356030 MtrunA17_Chr1g0174471 36.774 310 185 5 2 303 13 319 3.75e-56 190
Msa1356030 MtrunA17_Chr1g0174481 37.329 292 173 4 18 303 11 298 7.25e-55 186
Msa1356030 MtrunA17_Chr3g0084921 33.444 302 183 6 12 303 12 305 3.30e-54 185
Msa1356030 MtrunA17_Chr3g0086691 36.190 315 187 6 11 314 4 315 8.51e-54 184
Msa1356030 MtrunA17_Chr1g0174421 33.887 301 186 6 8 303 20 312 1.60e-53 179
Msa1356030 MtrunA17_Chr5g0430111 34.256 289 173 6 15 300 17 291 4.23e-53 180
Msa1356030 MtrunA17_Chr8g0390881 33.871 310 185 7 5 304 3 302 5.49e-53 181
Msa1356030 MtrunA17_Chr4g0058231 33.993 303 182 5 12 303 3 298 1.53e-52 180
Msa1356030 MtrunA17_Chr5g0430101 35.000 280 161 5 16 285 6 274 2.22e-52 180
Msa1356030 MtrunA17_Chr4g0058201 36.667 270 161 4 37 303 27 289 6.22e-52 178
Msa1356030 MtrunA17_Chr6g0484811 34.494 316 179 9 1 303 1 301 7.76e-52 178
Msa1356030 MtrunA17_Chr3g0101801 32.432 296 186 4 14 303 18 305 1.63e-51 178
Msa1356030 MtrunA17_Chr3g0101691 35.082 305 182 6 5 302 6 301 5.97e-51 176
Msa1356030 MtrunA17_Chr5g0430131 35.206 267 157 5 21 285 24 276 6.15e-51 176
Msa1356030 MtrunA17_Chr3g0101601 35.948 306 175 8 13 308 14 308 9.62e-51 175
Msa1356030 MtrunA17_Chr5g0430091 33.898 295 175 6 16 300 7 291 1.18e-50 175
Msa1356030 MtrunA17_Chr3g0101651 34.138 290 171 6 37 314 37 318 1.36e-50 175
Msa1356030 MtrunA17_Chr6g0484841 35.938 256 152 4 32 285 31 276 1.60e-50 175
Msa1356030 MtrunA17_Chr3g0101581 33.108 296 183 5 12 302 13 298 2.15e-50 174
Msa1356030 MtrunA17_Chr4g0047661 34.106 302 183 5 12 303 19 314 2.18e-50 175
Msa1356030 MtrunA17_Chr7g0235551 36.452 310 178 8 5 304 1 301 2.45e-50 174
Msa1356030 MtrunA17_Chr4g0061381 35.463 313 187 6 12 314 5 312 2.76e-50 174
Msa1356030 MtrunA17_Chr5g0403321 34.680 297 169 6 36 315 32 320 2.99e-50 174
Msa1356030 MtrunA17_Chr3g0101621 34.985 323 190 8 13 326 11 322 4.08e-50 174
Msa1356030 MtrunA17_Chr3g0094171 34.343 297 183 5 18 307 21 312 8.17e-50 173
Msa1356030 MtrunA17_Chr3g0101611 36.027 297 169 6 38 322 38 325 8.69e-50 173
Msa1356030 MtrunA17_Chr3g0101571 34.701 268 164 3 38 302 36 295 1.32e-49 172
Msa1356030 MtrunA17_Chr5g0430081 33.445 299 178 7 13 300 1 289 2.50e-49 172
Msa1356030 MtrunA17_Chr3g0094231 34.028 288 172 8 29 307 27 305 2.81e-49 172
Msa1356030 MtrunA17_Chr7g0254641 34.884 258 162 2 34 285 33 290 2.90e-49 172
Msa1356030 MtrunA17_Chr3g0101701 35.907 259 153 4 37 290 37 287 3.12e-49 171
Msa1356030 MtrunA17_Chr8g0372251 33.214 280 169 4 33 302 30 301 4.08e-49 171
Msa1356030 MtrunA17_Chr5g0403331 32.808 317 191 6 12 314 9 317 4.09e-49 171
Msa1356030 MtrunA17_Chr3g0101711 35.165 273 162 5 37 302 36 300 5.44e-49 171
Msa1356030 MtrunA17_Chr6g0466331 34.169 319 180 10 14 314 8 314 5.69e-49 171
Msa1356030 MtrunA17_Chr8g0361471 33.856 319 181 10 14 314 8 314 9.56e-49 170
Msa1356030 MtrunA17_Chr5g0430031 31.900 279 171 5 15 283 6 275 1.26e-48 170
Msa1356030 MtrunA17_Chr6g0465511 34.169 319 180 10 14 314 8 314 1.32e-48 170
Msa1356030 MtrunA17_Chr1g0174451 33.775 302 182 7 11 303 12 304 1.57e-48 170
Msa1356030 MtrunA17_Chr4g0035921 31.498 327 194 8 9 315 10 326 5.07e-48 168
Msa1356030 MtrunA17_Chr3g0101751 32.432 296 186 5 14 303 18 305 5.27e-48 168
Msa1356030 MtrunA17_Chr5g0403351 30.928 291 179 5 38 314 34 316 5.99e-48 168
Msa1356030 MtrunA17_Chr8g0357421 33.542 319 186 8 11 314 7 314 8.54e-48 167
Msa1356030 MtrunA17_Chr4g0052851 37.600 250 137 5 18 262 17 252 1.55e-47 167
Msa1356030 MtrunA17_Chr3g0086661 38.911 257 151 4 11 262 4 259 2.03e-47 167
Msa1356030 MtrunA17_Chr3g0086651 38.911 257 151 4 11 262 4 259 2.37e-47 167
Msa1356030 MtrunA17_Chr3g0101631 35.144 313 178 10 12 308 5 308 2.52e-47 166
Msa1356030 MtrunA17_Chr4g0058191 35.714 266 160 5 42 303 29 287 5.71e-47 165
Msa1356030 MtrunA17_Chr3g0101671 32.923 325 187 9 10 315 7 319 6.95e-47 165
Msa1356030 MtrunA17_Chr8g0362701 37.627 295 173 5 17 303 11 302 7.14e-47 165
Msa1356030 MtrunA17_Chr4g0052861 35.018 277 162 6 18 288 18 282 8.22e-47 165
Msa1356030 MtrunA17_Chr5g0401681 36.709 237 143 3 33 263 27 262 1.09e-46 164
Msa1356030 MtrunA17_Chr3g0101821 33.333 309 187 8 1 302 1 297 1.64e-46 164
Msa1356030 MtrunA17_Chr1g0174461 33.000 300 186 5 11 303 12 303 2.39e-46 164
Msa1356030 MtrunA17_Chr3g0101761 33.942 274 167 5 36 303 33 298 4.08e-46 163
Msa1356030 MtrunA17_Chr4g0047631 32.039 309 184 9 5 303 17 309 6.01e-46 163
Msa1356030 MtrunA17_Chr5g0445751 31.329 316 195 8 11 315 11 315 6.58e-46 158
Msa1356030 MtrunA17_Chr3g0101661 31.190 311 195 6 15 314 15 317 1.57e-45 162
Msa1356030 MtrunA17_Chr3g0101721 31.879 298 182 6 17 303 13 300 1.59e-45 162
Msa1356030 MtrunA17_Chr4g0053621 34.643 280 165 4 19 287 12 284 2.19e-45 161
Msa1356030 MtrunA17_Chr3g0116741 31.410 312 191 7 14 314 29 328 2.90e-45 161
Msa1356030 MtrunA17_Chr6g0451691 33.333 303 175 7 12 292 16 313 3.25e-45 161
Msa1356030 MtrunA17_Chr5g0405001 32.226 301 182 6 12 302 21 309 9.36e-45 160
Msa1356030 MtrunA17_Chr4g0047641 34.317 271 168 4 37 303 49 313 1.08e-44 159
Msa1356030 MtrunA17_Chr5g0445531 33.942 274 164 5 37 305 37 298 1.91e-44 159
Msa1356030 MtrunA17_Chr4g0047691 32.143 308 179 10 12 303 19 312 2.29e-44 159
Msa1356030 MtrunA17_Chr8g0357431 33.000 300 185 5 11 302 7 298 2.84e-44 158
Msa1356030 MtrunA17_Chr4g0057001 35.581 267 170 2 37 303 49 313 4.28e-44 158
Msa1356030 MtrunA17_Chr5g0445461 31.803 305 191 7 7 305 6 299 4.56e-44 157
Msa1356030 MtrunA17_Chr5g0445451 31.373 306 191 9 7 305 6 299 4.80e-44 157
Msa1356030 MtrunA17_Chr2g0304871 34.014 294 177 5 12 292 11 300 6.28e-44 157
Msa1356030 MtrunA17_Chr3g0101831 32.468 308 194 6 1 303 1 299 7.47e-44 157
Msa1356030 MtrunA17_Chr3g0101811 31.667 300 188 5 10 302 9 298 8.47e-44 157
Msa1356030 MtrunA17_Chr1g0162801 31.419 296 187 6 15 303 14 300 1.17e-43 157
Msa1356030 MtrunA17_Chr6g0451741 33.106 293 174 7 19 292 42 331 1.69e-43 157
Msa1356030 MtrunA17_Chr5g0446151 31.973 294 183 6 37 322 40 324 4.02e-43 155
Msa1356030 MtrunA17_Chr5g0401691 35.000 280 170 4 13 288 26 297 4.70e-43 155
Msa1356030 MtrunA17_Chr6g0463611 32.886 298 173 9 16 302 25 306 5.14e-43 151
Msa1356030 MtrunA17_Chr4g0017411 35.833 240 140 4 28 262 19 249 9.35e-43 154
Msa1356030 MtrunA17_Chr4g0011861 36.111 252 151 6 39 285 30 276 9.37e-43 150
Msa1356030 MtrunA17_Chr3g0101731 32.660 297 183 7 13 302 11 297 1.17e-42 154
Msa1356030 MtrunA17_Chr4g0011881 35.165 273 164 6 17 285 12 275 1.77e-42 153
Msa1356030 MtrunA17_Chr4g0052881 32.862 283 179 3 12 288 6 283 1.96e-42 153
Msa1356030 MtrunA17_Chr2g0280261 36.842 228 134 3 37 262 33 252 2.68e-42 153
Msa1356030 MtrunA17_Chr5g0430171 35.526 228 129 4 16 233 7 226 3.06e-42 146
Msa1356030 MtrunA17_Chr5g0445441 31.699 306 190 8 7 305 47 340 3.50e-42 153
Msa1356030 MtrunA17_Chr1g0162811 31.313 297 190 6 12 303 11 298 5.61e-42 152
Msa1356030 MtrunA17_Chr4g0024771 31.560 282 176 6 12 287 10 280 1.05e-41 151
Msa1356030 MtrunA17_Chr7g0255531 30.357 280 178 5 17 287 10 281 1.11e-41 151
Msa1356030 MtrunA17_Chr5g0402971 33.457 269 165 4 34 291 36 301 3.88e-41 145
Msa1356030 MtrunA17_Chr5g0445381 31.894 301 187 7 12 305 41 330 4.56e-41 150
Msa1356030 MtrunA17_Chr4g0011921 33.784 296 180 8 13 302 7 292 4.61e-41 149
Msa1356030 MtrunA17_Chr5g0419691 35.458 251 153 5 39 285 30 275 7.23e-41 149
Msa1356030 MtrunA17_Chr6g0463801 36.726 226 133 3 37 260 36 253 9.37e-41 149
Msa1356030 MtrunA17_Chr4g0030741 32.817 323 190 7 14 323 40 348 1.03e-40 145
Msa1356030 MtrunA17_Chr7g0224561 32.087 321 183 8 11 314 8 310 1.07e-40 149
Msa1356030 MtrunA17_Chr4g0011871 35.458 251 154 5 39 285 30 276 1.38e-40 148
Msa1356030 MtrunA17_Chr1g0167321 31.429 315 191 7 15 315 11 314 1.57e-40 148
Msa1356030 MtrunA17_Chr7g0224551 31.776 321 184 8 11 314 8 310 2.86e-40 147
Msa1356030 MtrunA17_Chr6g0463791 31.646 316 188 9 13 314 8 309 3.03e-40 147
Msa1356030 MtrunA17_Chr2g0296651 33.213 277 174 3 18 288 11 282 4.80e-40 147
Msa1356030 MtrunA17_Chr5g0446161 34.914 232 141 3 38 267 41 264 5.25e-40 147
Msa1356030 MtrunA17_Chr6g0472311 31.206 282 175 6 35 303 38 313 8.29e-40 146
Msa1356030 MtrunA17_Chr4g0030701 33.091 275 170 4 39 303 36 306 8.54e-40 146
Msa1356030 MtrunA17_Chr5g0406651 33.448 290 179 7 18 302 13 293 8.70e-40 146
Msa1356030 MtrunA17_Chr4g0008101 30.195 308 186 8 10 292 6 309 1.15e-39 146
Msa1356030 MtrunA17_Chr4g0076161 29.195 298 193 6 13 302 8 295 2.55e-39 145
Msa1356030 MtrunA17_Chr5g0431671 32.549 255 158 4 37 287 37 281 3.26e-39 144
Msa1356030 MtrunA17_Chr6g0451801 31.392 309 193 7 1 292 3 309 3.31e-39 141
Msa1356030 MtrunA17_Chr4g0046691 31.061 264 170 4 34 292 32 288 3.79e-39 140
Msa1356030 MtrunA17_Chr5g0431641 30.435 299 188 6 14 302 8 296 4.28e-39 144
Msa1356030 MtrunA17_Chr4g0058261 30.292 274 178 6 37 303 61 328 5.60e-39 144
Msa1356030 MtrunA17_Chr2g0296661 32.031 256 161 5 59 306 53 303 9.02e-39 143
Msa1356030 MtrunA17_Chr1g0174441 30.033 303 194 6 11 303 31 325 9.46e-39 144
Msa1356030 MtrunA17_Chr6g0451781 33.962 265 157 6 44 292 80 342 9.88e-39 144
Msa1356030 MtrunA17_Chr5g0445421 30.065 306 174 8 7 305 80 352 1.10e-38 144
Msa1356030 MtrunA17_Chr8g0362481 36.017 236 143 4 73 303 1 233 1.88e-38 141
Msa1356030 MtrunA17_Chr1g0156081 30.769 299 191 6 33 315 51 349 6.08e-38 141
Msa1356030 MtrunA17_Chr1g0156101 31.071 280 182 5 34 302 28 307 1.22e-37 140
Msa1356030 MtrunA17_Chr1g0200961 30.769 273 177 4 20 283 6 275 2.08e-37 139
Msa1356030 MtrunA17_Chr6g0451751 29.630 297 184 6 20 292 14 309 4.05e-37 139
Msa1356030 MtrunA17_Chr4g0011981 34.657 277 168 7 32 302 23 292 7.18e-37 138
Msa1356030 MtrunA17_Chr7g0258211 31.667 300 192 5 12 303 7 301 7.94e-37 138
Msa1356030 MtrunA17_Chr4g0058281 28.904 301 200 7 7 302 18 309 8.14e-37 138
Msa1356030 MtrunA17_Chr1g0160851 30.175 285 184 6 14 288 3 282 1.06e-36 137
Msa1356030 MtrunA17_Chr4g0011931 31.894 301 189 8 8 302 2 292 1.26e-36 133
Msa1356030 MtrunA17_Chr4g0011961 32.852 277 172 7 32 302 23 291 1.80e-36 137
Msa1356030 MtrunA17_Chr4g0011901 33.333 276 173 6 32 302 23 292 2.73e-36 136
Msa1356030 MtrunA17_Chr7g0218601 30.519 308 201 6 20 318 15 318 5.79e-36 135
Msa1356030 MtrunA17_Chr8g0339311 30.882 272 179 5 25 287 30 301 2.78e-35 134
Msa1356030 MtrunA17_Chr4g0046631 30.882 272 166 5 31 287 36 300 4.32e-35 134
Msa1356030 MtrunA17_Chr2g0310371 50.000 120 60 0 38 157 28 147 4.69e-35 124
Msa1356030 MtrunA17_Chr4g0020041 30.159 315 199 8 12 315 12 316 9.95e-35 132
Msa1356030 MtrunA17_Chr8g0339331 31.538 260 166 8 39 288 39 296 2.23e-34 131
Msa1356030 MtrunA17_Chr1g0205361 30.515 272 180 5 31 298 27 293 4.50e-34 130
Msa1356030 MtrunA17_Chr6g0458561 31.923 260 162 8 39 288 55 309 4.91e-34 130
Msa1356030 MtrunA17_Chr6g0466941 30.690 290 180 7 18 291 17 301 1.00e-33 130
Msa1356030 MtrunA17_Chr1g0205371 29.964 277 183 6 17 288 13 283 1.06e-33 129
Msa1356030 MtrunA17_Chr4g0056951 33.582 268 175 3 37 303 43 308 5.80e-33 127
Msa1356030 MtrunA17_Chr4g0039391 34.074 270 165 6 24 287 24 286 1.47e-32 126
Msa1356030 MtrunA17_Chr7g0246221 30.827 266 179 3 21 283 17 280 1.47e-32 126
Msa1356030 MtrunA17_Chr3g0082701 28.523 298 191 7 14 292 16 310 2.59e-32 126
Msa1356030 MtrunA17_Chr8g0355961 29.032 279 190 3 12 286 13 287 4.25e-32 125
Msa1356030 MtrunA17_Chr4g0046671 28.261 276 180 4 39 302 45 314 1.26e-31 120
Msa1356030 MtrunA17_Chr6g0466901 28.767 292 186 8 16 291 15 300 1.66e-31 123
Msa1356030 MtrunA17_Chr4g0030711 30.420 286 179 5 45 314 44 325 4.59e-31 122
Msa1356030 MtrunA17_Chr5g0431631 42.857 140 77 2 10 147 23 161 4.70e-31 114
Msa1356030 MtrunA17_Chr5g0445411 39.735 151 86 2 13 158 17 167 5.06e-31 115
Msa1356030 MtrunA17_Chr1g0213671 29.502 261 165 7 36 285 32 284 9.12e-31 121
Msa1356030 MtrunA17_Chr1g0207841 29.221 308 197 5 24 314 24 327 1.48e-30 121
Msa1356030 MtrunA17_Chr7g0246131 30.712 267 180 3 20 283 16 280 2.09e-30 120
Msa1356030 MtrunA17_Chr1g0207851 29.553 291 188 5 24 302 24 309 2.99e-30 117
Msa1356030 MtrunA17_Chr7g0265611 28.014 282 184 7 17 288 25 297 3.29e-30 120
Msa1356030 MtrunA17_Chr8g0356001 29.749 279 188 4 12 286 13 287 8.56e-30 119
Msa1356030 MtrunA17_Chr7g0218611 31.227 269 177 4 38 302 33 297 1.20e-29 118
Msa1356030 MtrunA17_Chr1g0164211 30.584 291 190 6 29 314 24 307 1.40e-29 118
Msa1356030 MtrunA17_Chr5g0431501 28.253 269 184 4 38 301 33 297 3.80e-29 117
Msa1356030 MtrunA17_Chr5g0431461 28.253 269 184 4 38 301 33 297 3.80e-29 117
Msa1356030 MtrunA17_Chr6g0451641 26.962 293 193 9 14 291 15 301 9.24e-29 115
Msa1356030 MtrunA17_Chr4g0039901 28.622 283 195 3 8 287 4 282 1.30e-28 115
Msa1356030 MtrunA17_Chr5g0395321 27.723 303 200 6 12 308 14 303 1.98e-28 115
Msa1356030 MtrunA17_Chr5g0395331 28.625 269 187 4 32 297 31 297 2.12e-28 114
Msa1356030 MtrunA17_Chr5g0431511 28.625 269 183 4 38 301 33 297 3.21e-28 114
Msa1356030 MtrunA17_Chr8g0351801 28.464 267 176 4 48 303 44 306 3.22e-28 114
Msa1356030 MtrunA17_Chr3g0101741 29.614 233 152 4 73 302 1 224 6.04e-28 112
Msa1356030 MtrunA17_Chr1g0197851 25.418 299 207 7 8 301 4 291 4.46e-27 110
Msa1356030 MtrunA17_Chr2g0314731 27.083 288 189 6 13 287 1 280 1.35e-26 109
Msa1356030 MtrunA17_Chr1g0176831 27.778 288 193 4 10 287 28 310 1.78e-26 109
Msa1356030 MtrunA17_Chr1g0197881 25.914 301 200 9 8 298 4 291 1.92e-26 108
Msa1356030 MtrunA17_Chr5g0395381 28.904 301 174 8 12 308 14 278 2.01e-26 108
Msa1356030 MtrunA17_Chr1g0197891 26.190 294 201 7 12 298 8 292 2.45e-26 108
Msa1356030 MtrunA17_Chr1g0156061 42.537 134 76 1 33 165 50 183 3.29e-26 108
Msa1356030 MtrunA17_Chr3g0117321 41.026 117 69 0 40 156 9 125 2.31e-25 98.6
Msa1356030 MtrunA17_Chr2g0314721 27.835 291 189 8 9 287 10 291 4.02e-25 105
Msa1356030 MtrunA17_Chr7g0246181 32.510 243 161 2 45 285 41 282 1.71e-24 103
Msa1356030 MtrunA17_Chr1g0200951 30.385 260 165 9 41 292 64 315 2.83e-24 103
Msa1356030 MtrunA17_Chr1g0197871 24.490 294 208 5 12 301 8 291 3.20e-24 102
Msa1356030 MtrunA17_Chr3g0107561 27.211 294 201 8 12 294 21 312 3.44e-24 100
Msa1356030 MtrunA17_Chr5g0430051 46.789 109 50 2 16 116 8 116 1.31e-23 94.0
Msa1356030 MtrunA17_Chr6g0451681 35.526 152 96 1 19 168 42 193 1.66e-23 100
Msa1356030 MtrunA17_Chr6g0451761 27.915 283 161 8 23 292 26 278 2.46e-23 97.4
Msa1356030 MtrunA17_Chr4g0046321 27.174 276 177 8 39 303 35 297 3.49e-23 100
Msa1356030 MtrunA17_Chr4g0046351 27.240 279 173 8 39 303 35 297 4.47e-23 99.8
Msa1356030 MtrunA17_Chr4g0046331 27.240 279 173 8 39 303 35 297 4.53e-23 99.8
Msa1356030 MtrunA17_Chr2g0310361 37.879 132 77 2 172 303 10 136 8.04e-23 92.4
Msa1356030 MtrunA17_Chr8g0370651 24.437 311 194 8 18 298 16 315 9.39e-22 95.9
Msa1356030 MtrunA17_Chr8g0370641 24.233 326 207 10 1 302 5 314 5.10e-21 93.6
Msa1356030 MtrunA17_Chr3g0105751 24.752 303 208 8 9 294 15 314 6.02e-21 92.4
Msa1356030 MtrunA17_Chr7g0246121 29.876 241 164 3 45 283 41 278 8.93e-21 92.8
Msa1356030 MtrunA17_Chr5g0419451 28.906 256 169 6 40 291 62 308 1.29e-20 92.4
Msa1356030 MtrunA17_Chr3g0107611 25.574 305 200 11 5 287 13 312 1.86e-20 92.0
Msa1356030 MtrunA17_Chr6g0484771 30.247 162 92 3 73 232 1 143 2.29e-20 85.9
Msa1356030 MtrunA17_Chr7g0246151 30.453 243 162 4 45 283 41 280 1.77e-19 89.0
Msa1356030 MtrunA17_Chr5g0432751 25.941 239 166 7 31 262 26 260 8.03e-19 87.0
Msa1356030 MtrunA17_Chr5g0445541 46.237 93 48 1 18 108 18 110 3.04e-18 80.1
Msa1356030 MtrunA17_Chr8g0346261 28.063 253 167 8 40 287 86 328 6.76e-18 84.3
Msa1356030 MtrunA17_Chr1g0210091 26.638 229 158 6 47 270 74 297 1.06e-17 84.0
Msa1356030 MtrunA17_Chr5g0445341 41.176 85 49 1 73 156 1 85 1.37e-17 76.6
Msa1356030 MtrunA17_Chr3g0107541 25.000 252 175 6 47 287 59 307 2.10e-16 80.1
Msa1356030 MtrunA17_Chr5g0431601 38.554 83 50 1 73 155 1 82 2.44e-14 67.4
Msa1356030 MtrunA17_Chr2g0280001 30.818 159 105 3 11 165 37 194 5.00e-14 70.1
Msa1356030 MtrunA17_Chr4g0076181 42.105 76 44 0 73 148 1 76 6.03e-14 68.9
Msa1356030 MtrunA17_Chr2g0280051 30.189 159 106 3 11 165 47 204 6.31e-14 71.6
Msa1356030 MtrunA17_Chr1g0198191 26.582 158 96 5 34 177 41 192 4.46e-13 69.7
Msa1356030 MtrunA17_Chr2g0280071 27.225 191 132 4 11 195 37 226 5.92e-13 69.7
Msa1356030 MtrunA17_Chr5g0413911 29.146 199 130 4 35 225 39 234 6.86e-13 69.3
Msa1356030 MtrunA17_Chr1g0176861 43.023 86 48 1 10 95 10 94 7.85e-13 63.9
Msa1356030 MtrunA17_Chr5g0409051 31.250 176 104 6 34 196 25 196 1.84e-11 65.1
Msa1356030 MtrunA17_Chr3g0086671 50.877 57 28 0 207 263 18 74 3.49e-11 60.5
Msa1356030 MtrunA17_Chr3g0116721 26.829 164 110 5 144 302 1 159 6.27e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356030 AT5G07990.1 37.687 268 160 3 18 285 15 275 4.44e-58 195
Msa1356030 AT5G06900.1 35.531 273 170 3 33 303 29 297 6.46e-51 176
Msa1356030 AT3G48320.1 31.010 287 181 4 18 303 15 285 9.19e-49 170
Msa1356030 AT3G48280.1 31.987 297 179 6 11 304 9 285 1.15e-47 167
Msa1356030 AT3G48310.1 32.472 271 169 3 34 303 28 285 1.51e-47 167
Msa1356030 AT3G48290.1 33.579 271 166 3 34 303 29 286 2.67e-46 164
Msa1356030 AT3G48290.2 33.704 270 165 3 34 302 29 285 5.72e-46 163
Msa1356030 AT3G48270.1 31.365 271 172 3 34 303 27 284 1.21e-45 162
Msa1356030 AT3G48300.1 32.881 295 178 5 40 327 31 312 3.75e-45 160
Msa1356030 AT3G48300.2 32.881 295 178 5 40 327 33 314 3.88e-45 160
Msa1356030 AT3G26310.1 32.143 308 180 8 5 303 6 293 1.92e-44 159
Msa1356030 AT5G57260.1 31.769 277 176 5 33 303 25 294 2.71e-43 156
Msa1356030 AT3G26170.1 30.897 301 189 8 12 303 7 297 4.40e-43 155
Msa1356030 AT3G26320.1 32.534 292 176 8 19 302 15 293 6.44e-43 155
Msa1356030 AT4G13310.2 31.502 273 173 4 34 301 28 291 1.56e-42 151
Msa1356030 AT3G26300.1 31.879 298 184 8 13 303 9 294 2.86e-42 153
Msa1356030 AT3G26330.1 34.286 280 161 8 32 302 28 293 3.07e-42 153
Msa1356030 AT2G30770.1 32.721 272 166 6 35 301 30 289 4.66e-42 152
Msa1356030 AT4G31940.1 34.545 275 150 8 40 291 33 300 1.04e-41 152
Msa1356030 AT4G13310.1 31.502 273 173 4 34 301 28 291 1.08e-41 151
Msa1356030 AT5G25120.1 32.550 298 176 9 13 303 11 290 6.95e-41 149
Msa1356030 AT4G36220.1 33.480 227 143 3 45 271 47 265 7.07e-41 150
Msa1356030 AT5G24960.2 33.333 270 168 4 35 301 30 290 7.27e-41 147
Msa1356030 AT4G37310.1 32.950 261 168 5 10 263 2 262 9.54e-41 149
Msa1356030 AT1G01280.1 33.209 268 164 7 47 305 41 302 1.73e-40 148
Msa1356030 AT5G57220.1 33.730 252 158 4 36 285 28 272 2.12e-40 148
Msa1356030 AT2G30750.1 32.222 270 170 4 35 301 30 289 2.38e-40 148
Msa1356030 AT3G26280.2 33.803 284 163 9 13 288 32 298 2.72e-40 148
Msa1356030 AT4G37430.1 32.258 279 173 5 19 288 9 280 3.08e-40 147
Msa1356030 AT4G37400.1 34.979 243 150 3 47 288 40 275 3.46e-40 147
Msa1356030 AT3G26280.1 33.803 284 163 9 13 288 15 281 3.46e-40 147
Msa1356030 AT1G11610.2 32.472 271 170 5 34 301 29 289 3.46e-40 147
Msa1356030 AT1G11610.1 32.472 271 170 5 34 301 29 289 3.70e-40 147
Msa1356030 AT1G13110.1 31.900 279 179 6 11 285 7 278 5.42e-40 147
Msa1356030 AT5G24960.1 33.333 270 168 4 35 301 30 290 5.74e-40 147
Msa1356030 AT1G13080.1 31.741 293 190 5 12 296 2 292 7.47e-40 147
Msa1356030 AT4G12300.1 31.879 298 193 5 9 303 17 307 1.04e-39 146
Msa1356030 AT4G13290.1 32.432 259 161 5 37 290 32 281 1.49e-39 145
Msa1356030 AT5G67310.1 31.849 292 164 8 33 296 37 321 2.24e-39 145
Msa1356030 AT3G26290.2 32.759 290 169 9 24 303 34 307 2.76e-39 145
Msa1356030 AT4G31970.1 33.333 267 157 6 40 288 33 296 2.80e-39 145
Msa1356030 AT3G26290.1 32.759 290 169 9 24 303 21 294 2.88e-39 145
Msa1356030 AT5G04330.1 32.707 266 169 5 39 301 33 291 4.22e-39 145
Msa1356030 AT5G44620.1 31.655 278 182 3 47 318 55 330 4.61e-39 145
Msa1356030 AT5G25180.1 32.203 295 178 8 14 302 11 289 2.01e-38 142
Msa1356030 AT3G26180.1 30.405 296 187 9 17 303 12 297 2.80e-38 142
Msa1356030 AT5G25130.1 31.907 257 157 6 13 264 11 254 6.14e-38 141
Msa1356030 AT1G74550.1 30.323 310 190 7 12 314 5 295 1.00e-37 140
Msa1356030 AT2G40890.1 31.698 265 171 4 31 288 20 281 1.21e-37 140
Msa1356030 AT5G24950.1 30.224 268 175 4 37 301 31 289 1.33e-37 140
Msa1356030 AT4G37410.1 32.404 287 174 7 10 288 3 277 2.40e-37 140
Msa1356030 AT3G53280.1 33.591 259 157 6 38 290 28 277 2.74e-37 139
Msa1356030 AT2G02580.1 32.886 298 179 8 13 302 9 293 3.52e-37 139
Msa1356030 AT4G13770.1 30.072 276 177 6 34 302 26 292 1.10e-36 138
Msa1356030 AT3G52970.1 31.317 281 185 4 10 285 8 285 1.44e-36 138
Msa1356030 AT5G42590.1 29.110 292 194 6 13 301 9 290 1.82e-36 137
Msa1356030 AT3G26190.1 31.923 260 162 6 38 290 28 279 2.97e-36 137
Msa1356030 AT4G31500.1 29.964 277 178 6 33 302 24 291 3.97e-36 136
Msa1356030 AT3G44250.1 32.061 262 158 5 38 290 28 278 6.79e-36 135
Msa1356030 AT2G24180.1 33.086 269 162 7 33 295 31 287 1.32e-35 135
Msa1356030 AT5G06905.1 29.352 293 198 4 13 303 9 294 4.37e-35 134
Msa1356030 AT4G37330.1 31.930 285 170 9 13 287 6 276 6.48e-35 133
Msa1356030 AT3G26200.1 31.154 260 164 6 38 290 28 279 2.52e-34 131
Msa1356030 AT5G25140.1 30.357 280 173 7 12 285 7 270 3.71e-34 131
Msa1356030 AT4G22710.1 33.784 222 142 5 47 265 62 281 1.65e-33 129
Msa1356030 AT4G37370.1 30.986 284 179 7 12 288 6 279 1.77e-33 129
Msa1356030 AT3G52970.2 30.169 295 184 6 10 285 8 299 3.11e-33 129
Msa1356030 AT5G10610.1 28.873 284 187 6 11 288 5 279 7.27e-33 127
Msa1356030 AT4G22690.1 33.333 222 143 5 47 265 93 312 1.06e-32 127
Msa1356030 AT4G37320.1 28.873 284 183 7 13 287 6 279 1.08e-32 127
Msa1356030 AT1G13090.1 29.104 268 167 6 35 292 25 279 1.77e-32 122
Msa1356030 AT5G36220.1 28.920 287 186 7 12 288 8 286 3.05e-32 125
Msa1356030 AT3G26270.1 30.742 283 181 7 31 305 25 300 4.00e-32 125
Msa1356030 AT3G53300.1 32.184 261 164 7 35 289 25 278 4.83e-32 125
Msa1356030 AT2G23190.1 30.877 285 178 8 14 288 49 324 5.20e-32 125
Msa1356030 AT4G12320.1 28.283 297 201 6 37 323 41 335 5.53e-32 125
Msa1356030 AT2G45560.2 29.259 270 181 5 21 283 21 287 5.55e-32 122
Msa1356030 AT2G42250.1 28.358 268 185 3 38 303 41 303 1.08e-31 124
Msa1356030 AT4G20240.2 30.798 263 170 5 38 297 33 286 1.32e-31 122
Msa1356030 AT3G26160.1 27.797 295 194 8 12 296 7 292 4.78e-31 122
Msa1356030 AT4G20240.1 30.798 263 170 5 38 297 33 286 5.24e-31 122
Msa1356030 AT1G13090.2 29.502 261 161 6 35 285 25 272 5.59e-31 122
Msa1356030 AT2G45550.1 29.508 305 195 7 15 306 15 312 7.76e-31 122
Msa1356030 AT4G31950.1 32.714 269 151 8 40 291 33 288 9.16e-31 122
Msa1356030 AT3G26210.1 30.522 249 165 4 45 290 38 281 9.86e-31 121
Msa1356030 AT2G45560.1 29.259 270 181 5 21 283 21 287 1.12e-30 121
Msa1356030 AT4G12330.1 29.204 226 155 3 47 268 55 279 3.36e-30 120
Msa1356030 AT5G10600.1 28.462 260 170 5 11 262 22 273 8.67e-30 119
Msa1356030 AT1G74540.1 27.985 268 167 8 12 265 2 257 1.23e-29 118
Msa1356030 AT4G37340.1 30.662 287 177 9 12 288 6 280 1.51e-29 118
Msa1356030 AT3G20940.1 28.467 274 186 5 33 302 37 304 1.92e-29 118
Msa1356030 AT3G26150.1 26.246 301 203 8 12 303 7 297 2.23e-29 117
Msa1356030 AT1G33720.1 29.934 304 187 10 9 297 8 300 2.71e-29 117
Msa1356030 AT3G26830.1 31.923 260 162 6 15 265 4 257 2.82e-29 117
Msa1356030 AT2G45570.1 31.313 297 188 7 5 293 9 297 7.07e-29 116
Msa1356030 AT2G45560.3 30.045 223 149 4 21 239 21 240 3.29e-28 110
Msa1356030 AT3G25180.2 28.731 268 183 5 23 285 23 287 1.05e-27 112
Msa1356030 AT3G25180.1 28.731 268 183 5 23 285 23 287 3.11e-27 112
Msa1356030 AT3G20110.1 28.378 296 199 7 12 303 15 301 3.73e-27 111
Msa1356030 AT2G23220.1 29.242 277 174 7 20 288 33 295 4.20e-27 111
Msa1356030 AT3G26220.1 28.417 278 183 7 14 284 8 276 1.12e-26 110
Msa1356030 AT2G46660.1 31.373 255 155 10 37 285 69 309 1.13e-26 110
Msa1356030 AT4G37360.1 28.571 287 183 8 12 288 6 280 1.30e-26 110
Msa1356030 AT3G28740.1 30.268 261 169 6 34 288 35 288 3.32e-26 108
Msa1356030 AT3G32047.1 27.413 259 176 5 49 303 53 303 1.76e-25 107
Msa1356030 AT3G20950.1 26.861 309 202 8 12 303 7 308 2.35e-25 106
Msa1356030 AT4G15360.1 25.902 305 208 6 12 303 5 304 2.78e-25 106
Msa1356030 AT3G61040.2 28.195 266 179 5 39 301 34 290 1.20e-24 103
Msa1356030 AT2G25160.2 28.114 281 178 8 21 285 17 289 1.51e-24 103
Msa1356030 AT2G25160.1 28.114 281 178 8 21 285 17 289 2.87e-24 103
Msa1356030 AT1G50520.1 27.508 309 200 7 12 303 6 307 2.94e-24 103
Msa1356030 AT3G61040.1 28.195 266 179 5 39 301 34 290 4.43e-24 102
Msa1356030 AT3G20090.2 26.275 255 179 4 52 303 58 306 6.15e-24 102
Msa1356030 AT4G12310.1 28.028 289 184 5 45 318 51 330 6.85e-24 102
Msa1356030 AT1G13100.1 28.571 245 158 6 48 285 38 272 4.05e-23 100
Msa1356030 AT4G20235.1 24.415 299 182 6 15 302 8 273 4.22e-23 98.2
Msa1356030 AT2G45580.3 29.344 259 172 5 45 295 45 300 5.47e-23 99.0
Msa1356030 AT2G45580.1 29.344 259 172 5 45 295 45 300 1.32e-22 98.6
Msa1356030 AT3G26230.1 25.979 281 191 7 12 285 4 274 2.96e-22 97.4
Msa1356030 AT3G61880.1 30.651 261 166 8 31 285 58 309 5.34e-22 97.1
Msa1356030 AT3G61880.2 30.651 261 166 8 31 285 58 309 8.28e-22 96.7
Msa1356030 AT5G09970.1 27.925 265 167 10 40 292 71 323 1.12e-21 95.9
Msa1356030 AT1G01190.1 27.692 260 171 8 9 263 50 297 6.12e-21 94.0
Msa1356030 AT1G01190.2 27.692 260 171 8 9 263 55 302 6.31e-21 94.0
Msa1356030 AT3G20120.4 28.016 257 169 5 53 303 57 303 9.09e-21 93.2
Msa1356030 AT3G20100.1 25.670 261 184 5 47 303 50 304 1.45e-20 92.8
Msa1356030 AT2G14100.1 26.275 255 176 5 53 303 59 305 2.56e-20 92.0
Msa1356030 AT5G47990.1 26.357 258 180 5 49 302 53 304 7.53e-20 90.5
Msa1356030 AT3G20140.1 25.000 272 193 5 36 303 40 304 1.60e-19 89.7
Msa1356030 AT1G58260.1 24.407 295 209 8 10 291 9 302 1.73e-19 89.7
Msa1356030 AT3G20080.2 28.247 308 186 9 33 330 37 319 2.61e-19 89.0
Msa1356030 AT3G20080.1 28.247 308 186 9 33 330 37 319 2.61e-19 89.0
Msa1356030 AT5G05260.1 25.581 301 195 8 12 290 7 300 3.73e-19 88.6
Msa1356030 AT1G74110.1 28.409 264 173 8 40 291 65 324 7.64e-19 87.8
Msa1356030 AT3G20130.1 24.444 270 190 6 53 315 58 320 8.96e-19 87.4
Msa1356030 AT4G15330.1 24.354 271 194 6 36 302 36 299 1.26e-18 87.0
Msa1356030 AT5G05260.2 27.636 275 173 8 12 260 7 281 1.38e-18 87.0
Msa1356030 AT3G26180.2 40.000 105 60 1 17 121 12 113 2.56e-18 85.1
Msa1356030 AT1G50560.1 25.890 309 204 7 12 302 6 307 6.74e-18 84.7
Msa1356030 AT5G42580.1 26.721 247 161 4 58 302 60 288 8.30e-18 84.3
Msa1356030 AT5G35917.1 28.458 253 160 7 29 260 33 285 8.91e-18 84.3
Msa1356030 AT1G79370.1 26.573 286 172 10 34 287 36 315 1.08e-17 84.3
Msa1356030 AT2G05180.1 26.014 296 203 6 18 303 15 304 1.53e-17 83.6
Msa1356030 AT1G13710.1 25.902 305 197 9 11 292 6 304 2.46e-17 83.2
Msa1356030 AT4G15350.1 26.437 261 177 8 49 302 45 297 4.51e-17 82.4
Msa1356030 AT4G39950.1 23.203 306 221 8 15 307 33 337 7.84e-17 81.6
Msa1356030 AT4G39950.2 23.203 306 221 8 15 307 73 377 1.00e-16 81.3
Msa1356030 AT3G53305.1 30.435 161 107 2 73 231 1 158 2.81e-16 79.0
Msa1356030 AT3G20960.2 22.727 242 178 4 65 303 69 304 4.77e-16 79.3
Msa1356030 AT1G16400.1 26.117 291 197 9 13 287 18 306 5.93e-16 79.0
Msa1356030 AT2G27000.1 26.275 255 165 6 59 303 61 302 9.58e-16 78.2
Msa1356030 AT5G35715.1 26.201 229 156 6 73 293 1 224 1.10e-15 77.8
Msa1356030 AT3G53290.1 26.570 207 137 6 91 290 11 209 3.53e-15 76.3
Msa1356030 AT2G22330.1 24.060 266 191 7 32 287 52 316 1.10e-14 75.1
Msa1356030 AT2G22330.2 24.060 266 191 7 32 287 75 339 1.30e-14 75.1
Msa1356030 AT5G04630.1 28.235 170 112 4 5 165 1 169 2.20e-14 74.3
Msa1356030 AT1G16410.2 29.651 172 114 4 34 199 41 211 7.09e-14 72.4
Msa1356030 AT1G16410.1 25.185 270 185 10 34 288 41 308 1.03e-13 72.4
Msa1356030 AT3G10560.1 31.343 134 86 3 37 165 45 177 2.30e-13 71.2
Msa1356030 AT3G61035.1 26.182 275 172 9 47 311 51 304 9.45e-13 68.6
Msa1356030 AT1G28430.1 22.267 247 182 5 59 302 62 301 3.38e-12 67.8
Msa1356030 AT2G12190.1 29.651 172 108 4 38 200 32 199 4.67e-12 67.0
Msa1356030 AT4G15380.1 24.016 254 153 6 65 302 70 299 9.11e-12 66.2

Find 77 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAAAGCTTTGGCTATTTC+TGG 0.077723 tig0015366:+64656 None:intergenic
CCTATTATGGGCCATGATTT+TGG 0.129545 tig0015366:+64794 None:intergenic
TAAGAAGTTTGATTGGTTTA+TGG 0.179270 tig0015366:-64171 Msa1356030:CDS
AAGATTGAGATTTCCTATTA+TGG 0.181940 tig0015366:+64781 None:intergenic
AATTATTGCCACTTCCTAAT+TGG 0.202104 tig0015366:-64907 Msa1356030:CDS
CTTAATGGGGTCCTCAATAT+TGG 0.210178 tig0015366:-64260 Msa1356030:CDS
ATGGACCCATCATGCATTTA+TGG 0.211006 tig0015366:-64712 Msa1356030:CDS
TGTTATAAGTCGCATGGTTT+TGG 0.225625 tig0015366:-64363 Msa1356030:CDS
ATAGGAAATCTCAATCTTAT+TGG 0.239547 tig0015366:-64776 Msa1356030:CDS
CCAAAATCATGGCCCATAAT+AGG 0.282703 tig0015366:-64794 Msa1356030:CDS
TTACGAGCTTGTTGCCAATA+TGG 0.293261 tig0015366:+64536 None:intergenic
ACAAATGACGCTGTCCTTGC+TGG 0.306475 tig0015366:-64629 Msa1356030:CDS
TTAATGGGGTCCTCAATATT+GGG 0.313985 tig0015366:-64259 Msa1356030:CDS
AACATCTTCTTAAACTCTTC+AGG 0.314482 tig0015366:+64299 None:intergenic
AGATTGAGATTTCCTATTAT+GGG 0.346533 tig0015366:+64782 None:intergenic
ATTATTGCCACTTCCTAATT+GGG 0.353868 tig0015366:-64906 Msa1356030:CDS
TTGCCAATATGGACCGTATT+GGG 0.355477 tig0015366:+64547 None:intergenic
ACAAGGGTGCGACGCCGGTT+AGG 0.367767 tig0015366:-63530 Msa1356030:intron
GGAAAGCTTTGGCTATTTCT+GGG 0.373033 tig0015366:+64657 None:intergenic
CCCATCATGCATTTATGGTT+CGG 0.376694 tig0015366:-64707 Msa1356030:CDS
AACTAGTTAGTTTCTTCAAA+AGG 0.403214 tig0015366:+63484 None:intergenic
GGTCCCAATACGGTCCATAT+TGG 0.410076 tig0015366:-64550 Msa1356030:CDS
TGTGAAGAGAATGAAGGCTT+TGG 0.411518 tig0015366:-64195 Msa1356030:CDS
TGCGACGCCGGTTAGGGTTA+CGG 0.413960 tig0015366:-63523 Msa1356030:CDS
ACCACCACCGTAACCCTAAC+CGG 0.417449 tig0015366:+63516 None:intergenic
GTGAAGAGAATGAAGGCTTT+GGG 0.421112 tig0015366:-64194 Msa1356030:CDS
GGGCGGCCCAAATTCTCTGC+TGG 0.422252 tig0015366:-64608 Msa1356030:CDS
TGATTATGTTGCTAAAGATA+TGG 0.441940 tig0015366:-64105 Msa1356030:CDS
ACATCTTCTTAAACTCTTCA+GGG 0.443345 tig0015366:+64300 None:intergenic
CTTTGGGTAAGAAGTTTGAT+TGG 0.443413 tig0015366:-64178 Msa1356030:CDS
GGCTCTAAACCTGTCATTGT+AGG 0.451928 tig0015366:-64686 Msa1356030:CDS
GTTGCCAATATGGACCGTAT+TGG 0.458748 tig0015366:+64546 None:intergenic
ATAACTACTCCAACATTACT+TGG 0.463341 tig0015366:-64571 Msa1356030:CDS
GCCGGTTAGGGTTACGGTGG+TGG 0.468143 tig0015366:-63517 Msa1356030:CDS
GTGGAGACAAAGACGGCGGC+GGG 0.472687 tig0015366:+64844 None:intergenic
CAAGGGTGCGACGCCGGTTA+GGG 0.473436 tig0015366:-63529 Msa1356030:intron
GGGCTTGATCCTACAATGAC+AGG 0.481006 tig0015366:+64677 None:intergenic
CTCCCACATCAATCCCTCCA+TGG 0.486601 tig0015366:-64749 Msa1356030:CDS
TACCACCTGGTCCAAAATCA+TGG 0.494807 tig0015366:-64805 Msa1356030:CDS
AACATTACTTGGTCCCAATA+CGG 0.514480 tig0015366:-64560 Msa1356030:CDS
TGAAGAGTTTAAGAAGATGT+TGG 0.518059 tig0015366:-64297 Msa1356030:CDS
TTGGTTTATGGAACATGTGT+TGG 0.518587 tig0015366:-64159 Msa1356030:CDS
GGTGGAGACAAAGACGGCGG+CGG 0.520083 tig0015366:+64843 None:intergenic
CAAATGACGCTGTCCTTGCT+GGG 0.520908 tig0015366:-64628 Msa1356030:CDS
CAGGTGGTAGATTGTATCTA+CGG 0.531521 tig0015366:+64819 None:intergenic
GAATAAAATCCCCAATATTG+AGG 0.540420 tig0015366:+64249 None:intergenic
GCCGAACCATAAATGCATGA+TGG 0.546797 tig0015366:+64706 None:intergenic
TGAGACTCAAAGTTGAAAGA+TGG 0.549640 tig0015366:+64387 None:intergenic
ATTCATTTCTTAGACTTGCA+AGG 0.553866 tig0015366:-64221 Msa1356030:CDS
CCGAACCATAAATGCATGAT+GGG 0.556874 tig0015366:+64707 None:intergenic
TCCCACATCAATCCCTCCAT+GGG 0.562657 tig0015366:-64748 Msa1356030:CDS
AAAATGACCCAATTAGGAAG+TGG 0.562868 tig0015366:+64899 None:intergenic
GTTTATGGAACATGTGTTGG+AGG 0.565313 tig0015366:-64156 Msa1356030:CDS
CATGAACAAGGGTGCGACGC+CGG 0.567766 tig0015366:-63535 Msa1356030:intron
GGCGGCGGGTAAAGAGAAGA+AGG 0.570026 tig0015366:+64858 None:intergenic
AGAATTTGGGCCGCCCAGCA+AGG 0.570465 tig0015366:+64615 None:intergenic
GTAGATTGTATCTACGGCGG+TGG 0.571670 tig0015366:+64825 None:intergenic
TCTCAATGTTATAAGTCGCA+TGG 0.578721 tig0015366:-64369 Msa1356030:CDS
TCATGTACTCATAAGACTCA+AGG 0.586026 tig0015366:+64480 None:intergenic
TAATGGGGTCCTCAATATTG+GGG 0.589856 tig0015366:-64258 Msa1356030:CDS
TCAAGTTTGACTTCAAGACT+AGG 0.593248 tig0015366:+64053 None:intergenic
GTATTGGGACCAAGTAATGT+TGG 0.601241 tig0015366:+64562 None:intergenic
TGGAGGAGCACATTGAAAGA+AGG 0.603017 tig0015366:-64139 Msa1356030:CDS
CATCTTCTTAAACTCTTCAG+GGG 0.610959 tig0015366:+64301 None:intergenic
TTATGTTGCTAAAGATATGG+TGG 0.612335 tig0015366:-64102 Msa1356030:CDS
AGGTTATGTGAAGAGAATGA+AGG 0.616727 tig0015366:-64201 Msa1356030:CDS
CGTAGATACAATCTACCACC+TGG 0.618779 tig0015366:-64818 Msa1356030:CDS
AAGTCTAAGAAATGAATCCA+AGG 0.620156 tig0015366:+64227 None:intergenic
GCCCATGGAGGGATTGATGT+GGG 0.636794 tig0015366:+64747 None:intergenic
GTCTTGAAGTCAAACTTGAG+AGG 0.644499 tig0015366:-64049 Msa1356030:CDS
GAAGTCAAACTTGAGAGGCA+CGG 0.668845 tig0015366:-64044 Msa1356030:CDS
TACGGCGGTGGAGACAAAGA+CGG 0.695954 tig0015366:+64837 None:intergenic
AGCCCATGGAGGGATTGATG+TGG 0.698541 tig0015366:+64746 None:intergenic
ATGACGCTGTCCTTGCTGGG+CGG 0.705430 tig0015366:-64625 Msa1356030:CDS
GTGGTAGATTGTATCTACGG+CGG 0.717323 tig0015366:+64822 None:intergenic
GGCGGTGGAGACAAAGACGG+CGG 0.723756 tig0015366:+64840 None:intergenic
GACGCCGGTTAGGGTTACGG+TGG 0.745470 tig0015366:-63520 Msa1356030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACATAATTAATATCAGT+AGG + tig0015366:64448-64467 None:intergenic 15.0%
!!! TCTATTTAAAAGTTTTAAGT+GGG - tig0015366:64506-64525 Msa1356030:CDS 15.0%
!! AGTTTACATCTAAAAAAAAT+TGG - tig0015366:64688-64707 Msa1356030:CDS 15.0%
!! AATACATAATTAATATCAGT+AGG + tig0015366:64448-64467 None:intergenic 15.0%
!!! TCTATTTAAAAGTTTTAAGT+GGG - tig0015366:64506-64525 Msa1356030:CDS 15.0%
!! AGTTTACATCTAAAAAAAAT+TGG - tig0015366:64688-64707 Msa1356030:CDS 15.0%
!!! AAACAAAACAATTTTGTTGA+AGG - tig0015366:63976-63995 Msa1356030:intron 20.0%
!!! ATGAATTGTTTTTGCTTAAT+GGG - tig0015366:64113-64132 Msa1356030:CDS 20.0%
!!! CACTTAAAACTTTTAAATAG+AGG + tig0015366:64507-64526 None:intergenic 20.0%
!!! CTCTATTTAAAAGTTTTAAG+TGG - tig0015366:64505-64524 Msa1356030:CDS 20.0%
!!! ATTGGGTTTTGAAAAAAAAT+GGG + tig0015366:64723-64742 None:intergenic 20.0%
!!! AAACAAAACAATTTTGTTGA+AGG - tig0015366:63976-63995 Msa1356030:intron 20.0%
!!! ATGAATTGTTTTTGCTTAAT+GGG - tig0015366:64113-64132 Msa1356030:CDS 20.0%
!!! CACTTAAAACTTTTAAATAG+AGG + tig0015366:64507-64526 None:intergenic 20.0%
!!! CTCTATTTAAAAGTTTTAAG+TGG - tig0015366:64505-64524 Msa1356030:CDS 20.0%
!!! ATTGGGTTTTGAAAAAAAAT+GGG + tig0015366:64723-64742 None:intergenic 20.0%
! GTAAAAAAAATGACCCAATT+AGG + tig0015366:63497-63516 None:intergenic 25.0%
! AGATTGAGATTTCCTATTAT+GGG + tig0015366:63608-63627 None:intergenic 25.0%
! AAGATTGAGATTTCCTATTA+TGG + tig0015366:63609-63628 None:intergenic 25.0%
! ATAGGAAATCTCAATCTTAT+TGG - tig0015366:63611-63630 Msa1356030:intron 25.0%
!!! GATGAATTGTTTTTGCTTAA+TGG - tig0015366:64112-64131 Msa1356030:CDS 25.0%
!!! TGAATTGTTTTTGCTTAATG+GGG - tig0015366:64114-64133 Msa1356030:CDS 25.0%
!!! TAAGAAGTTTGATTGGTTTA+TGG - tig0015366:64216-64235 Msa1356030:CDS 25.0%
! TGATTATGTTGCTAAAGATA+TGG - tig0015366:64282-64301 Msa1356030:CDS 25.0%
!!! CATTGGGTTTTGAAAAAAAA+TGG + tig0015366:64724-64743 None:intergenic 25.0%
! AAAAGGAAACATTTCATTTC+AGG + tig0015366:64809-64828 None:intergenic 25.0%
!! AACTAGTTAGTTTCTTCAAA+AGG + tig0015366:64906-64925 None:intergenic 25.0%
! GTAAAAAAAATGACCCAATT+AGG + tig0015366:63497-63516 None:intergenic 25.0%
! AGATTGAGATTTCCTATTAT+GGG + tig0015366:63608-63627 None:intergenic 25.0%
! AAGATTGAGATTTCCTATTA+TGG + tig0015366:63609-63628 None:intergenic 25.0%
! ATAGGAAATCTCAATCTTAT+TGG - tig0015366:63611-63630 Msa1356030:intron 25.0%
!!! GATGAATTGTTTTTGCTTAA+TGG - tig0015366:64112-64131 Msa1356030:CDS 25.0%
!!! TGAATTGTTTTTGCTTAATG+GGG - tig0015366:64114-64133 Msa1356030:CDS 25.0%
!!! TAAGAAGTTTGATTGGTTTA+TGG - tig0015366:64216-64235 Msa1356030:CDS 25.0%
! TGATTATGTTGCTAAAGATA+TGG - tig0015366:64282-64301 Msa1356030:CDS 25.0%
!!! CATTGGGTTTTGAAAAAAAA+TGG + tig0015366:64724-64743 None:intergenic 25.0%
! AAAAGGAAACATTTCATTTC+AGG + tig0015366:64809-64828 None:intergenic 25.0%
!! AACTAGTTAGTTTCTTCAAA+AGG + tig0015366:64906-64925 None:intergenic 25.0%
! AATTATTGCCACTTCCTAAT+TGG - tig0015366:63480-63499 Msa1356030:CDS 30.0%
! ATTATTGCCACTTCCTAATT+GGG - tig0015366:63481-63500 Msa1356030:CDS 30.0%
!!! ATTTGTTTTGAGGAAAGCTT+TGG + tig0015366:63744-63763 None:intergenic 30.0%
! TATTTTCCAGCAGAGAATTT+GGG + tig0015366:63788-63807 None:intergenic 30.0%
! ATATTTTCCAGCAGAGAATT+TGG + tig0015366:63789-63808 None:intergenic 30.0%
ATAACTACTCCAACATTACT+TGG - tig0015366:63816-63835 Msa1356030:intron 30.0%
ACATCTTCTTAAACTCTTCA+GGG + tig0015366:64090-64109 None:intergenic 30.0%
AACATCTTCTTAAACTCTTC+AGG + tig0015366:64091-64110 None:intergenic 30.0%
TGAAGAGTTTAAGAAGATGT+TGG - tig0015366:64090-64109 Msa1356030:CDS 30.0%
GAATAAAATCCCCAATATTG+AGG + tig0015366:64141-64160 None:intergenic 30.0%
! ATATTGGGGATTTTATTCCT+TGG - tig0015366:64143-64162 Msa1356030:CDS 30.0%
AAGTCTAAGAAATGAATCCA+AGG + tig0015366:64163-64182 None:intergenic 30.0%
ATTCATTTCTTAGACTTGCA+AGG - tig0015366:64166-64185 Msa1356030:CDS 30.0%
TTATGTTGCTAAAGATATGG+TGG - tig0015366:64285-64304 Msa1356030:CDS 30.0%
TAATGAAGATGCTCATTTAG+AGG + tig0015366:64480-64499 None:intergenic 30.0%
!! AAACTCGATTTGGAAAACAT+TGG + tig0015366:64555-64574 None:intergenic 30.0%
! TTTACCGAGTTTACGTTTTT+AGG - tig0015366:64587-64606 Msa1356030:CDS 30.0%
!! AACTCGATTTCTGGTAAAAT+CGG - tig0015366:64637-64656 Msa1356030:CDS 30.0%
AGATGTAAACTCGTAAAACT+CGG + tig0015366:64679-64698 None:intergenic 30.0%
! CTAAAAAAAATTGGCCCTTT+TGG - tig0015366:64697-64716 Msa1356030:CDS 30.0%
TGAAAAAAAATGGGCCAAAA+GGG + tig0015366:64714-64733 None:intergenic 30.0%
TTGAAAAAAAATGGGCCAAA+AGG + tig0015366:64715-64734 None:intergenic 30.0%
TCAGGAACATGTTACTATAA+AGG + tig0015366:64791-64810 None:intergenic 30.0%
TTGTTCATGATTTGAGAACT+CGG + tig0015366:64841-64860 None:intergenic 30.0%
AGTTCTCAAATCATGAACAA+GGG - tig0015366:64841-64860 Msa1356030:CDS 30.0%
! AATTATTGCCACTTCCTAAT+TGG - tig0015366:63480-63499 Msa1356030:CDS 30.0%
! ATTATTGCCACTTCCTAATT+GGG - tig0015366:63481-63500 Msa1356030:CDS 30.0%
!!! ATTTGTTTTGAGGAAAGCTT+TGG + tig0015366:63744-63763 None:intergenic 30.0%
! TATTTTCCAGCAGAGAATTT+GGG + tig0015366:63788-63807 None:intergenic 30.0%
! ATATTTTCCAGCAGAGAATT+TGG + tig0015366:63789-63808 None:intergenic 30.0%
ATAACTACTCCAACATTACT+TGG - tig0015366:63816-63835 Msa1356030:intron 30.0%
ACATCTTCTTAAACTCTTCA+GGG + tig0015366:64090-64109 None:intergenic 30.0%
AACATCTTCTTAAACTCTTC+AGG + tig0015366:64091-64110 None:intergenic 30.0%
TGAAGAGTTTAAGAAGATGT+TGG - tig0015366:64090-64109 Msa1356030:CDS 30.0%
GAATAAAATCCCCAATATTG+AGG + tig0015366:64141-64160 None:intergenic 30.0%
! ATATTGGGGATTTTATTCCT+TGG - tig0015366:64143-64162 Msa1356030:CDS 30.0%
AAGTCTAAGAAATGAATCCA+AGG + tig0015366:64163-64182 None:intergenic 30.0%
ATTCATTTCTTAGACTTGCA+AGG - tig0015366:64166-64185 Msa1356030:CDS 30.0%
TTATGTTGCTAAAGATATGG+TGG - tig0015366:64285-64304 Msa1356030:CDS 30.0%
TAATGAAGATGCTCATTTAG+AGG + tig0015366:64480-64499 None:intergenic 30.0%
!! AAACTCGATTTGGAAAACAT+TGG + tig0015366:64555-64574 None:intergenic 30.0%
! TTTACCGAGTTTACGTTTTT+AGG - tig0015366:64587-64606 Msa1356030:CDS 30.0%
!! AACTCGATTTCTGGTAAAAT+CGG - tig0015366:64637-64656 Msa1356030:CDS 30.0%
AGATGTAAACTCGTAAAACT+CGG + tig0015366:64679-64698 None:intergenic 30.0%
! CTAAAAAAAATTGGCCCTTT+TGG - tig0015366:64697-64716 Msa1356030:CDS 30.0%
TGAAAAAAAATGGGCCAAAA+GGG + tig0015366:64714-64733 None:intergenic 30.0%
TTGAAAAAAAATGGGCCAAA+AGG + tig0015366:64715-64734 None:intergenic 30.0%
TCAGGAACATGTTACTATAA+AGG + tig0015366:64791-64810 None:intergenic 30.0%
TTGTTCATGATTTGAGAACT+CGG + tig0015366:64841-64860 None:intergenic 30.0%
AGTTCTCAAATCATGAACAA+GGG - tig0015366:64841-64860 Msa1356030:CDS 30.0%
AAAATGACCCAATTAGGAAG+TGG + tig0015366:63491-63510 None:intergenic 35.0%
!!! CATATTTTTTAGTGAGCCCA+TGG + tig0015366:63658-63677 None:intergenic 35.0%
CATGGGCTCACTAAAAAATA+TGG - tig0015366:63656-63675 Msa1356030:intron 35.0%
AACATTACTTGGTCCCAATA+CGG - tig0015366:63827-63846 Msa1356030:intron 35.0%
TCATGTACTCATAAGACTCA+AGG + tig0015366:63910-63929 None:intergenic 35.0%
TGAGACTCAAAGTTGAAAGA+TGG + tig0015366:64003-64022 None:intergenic 35.0%
TCTCAATGTTATAAGTCGCA+TGG - tig0015366:64018-64037 Msa1356030:intron 35.0%
! TGTTATAAGTCGCATGGTTT+TGG - tig0015366:64024-64043 Msa1356030:intron 35.0%
! GTTATAAGTCGCATGGTTTT+GGG - tig0015366:64025-64044 Msa1356030:CDS 35.0%
!! TTATAAGTCGCATGGTTTTG+GGG - tig0015366:64026-64045 Msa1356030:CDS 35.0%
CATCTTCTTAAACTCTTCAG+GGG + tig0015366:64089-64108 None:intergenic 35.0%
TTAATGGGGTCCTCAATATT+GGG - tig0015366:64128-64147 Msa1356030:CDS 35.0%
AGGTTATGTGAAGAGAATGA+AGG - tig0015366:64186-64205 Msa1356030:CDS 35.0%
CTTTGGGTAAGAAGTTTGAT+TGG - tig0015366:64209-64228 Msa1356030:CDS 35.0%
TTGGTTTATGGAACATGTGT+TGG - tig0015366:64228-64247 Msa1356030:CDS 35.0%
! TCAAGTTTGACTTCAAGACT+AGG + tig0015366:64337-64356 None:intergenic 35.0%
AAACGTAAACTCGGTAAACT+CGG + tig0015366:64585-64604 None:intergenic 35.0%
GGTACCTAAAAACGTAAACT+CGG + tig0015366:64594-64613 None:intergenic 35.0%
GTTCTTGTAGAAAACGCATT+GGG + tig0015366:64740-64759 None:intergenic 35.0%
TGTTCTTGTAGAAAACGCAT+TGG + tig0015366:64741-64760 None:intergenic 35.0%
GAGTTCTCAAATCATGAACA+AGG - tig0015366:64840-64859 Msa1356030:CDS 35.0%
AAAATGACCCAATTAGGAAG+TGG + tig0015366:63491-63510 None:intergenic 35.0%
!!! CATATTTTTTAGTGAGCCCA+TGG + tig0015366:63658-63677 None:intergenic 35.0%
CATGGGCTCACTAAAAAATA+TGG - tig0015366:63656-63675 Msa1356030:intron 35.0%
AACATTACTTGGTCCCAATA+CGG - tig0015366:63827-63846 Msa1356030:intron 35.0%
TCATGTACTCATAAGACTCA+AGG + tig0015366:63910-63929 None:intergenic 35.0%
TGAGACTCAAAGTTGAAAGA+TGG + tig0015366:64003-64022 None:intergenic 35.0%
TCTCAATGTTATAAGTCGCA+TGG - tig0015366:64018-64037 Msa1356030:intron 35.0%
! TGTTATAAGTCGCATGGTTT+TGG - tig0015366:64024-64043 Msa1356030:intron 35.0%
! GTTATAAGTCGCATGGTTTT+GGG - tig0015366:64025-64044 Msa1356030:CDS 35.0%
!! TTATAAGTCGCATGGTTTTG+GGG - tig0015366:64026-64045 Msa1356030:CDS 35.0%
CATCTTCTTAAACTCTTCAG+GGG + tig0015366:64089-64108 None:intergenic 35.0%
TTAATGGGGTCCTCAATATT+GGG - tig0015366:64128-64147 Msa1356030:CDS 35.0%
AGGTTATGTGAAGAGAATGA+AGG - tig0015366:64186-64205 Msa1356030:CDS 35.0%
CTTTGGGTAAGAAGTTTGAT+TGG - tig0015366:64209-64228 Msa1356030:CDS 35.0%
TTGGTTTATGGAACATGTGT+TGG - tig0015366:64228-64247 Msa1356030:CDS 35.0%
! TCAAGTTTGACTTCAAGACT+AGG + tig0015366:64337-64356 None:intergenic 35.0%
AAACGTAAACTCGGTAAACT+CGG + tig0015366:64585-64604 None:intergenic 35.0%
GGTACCTAAAAACGTAAACT+CGG + tig0015366:64594-64613 None:intergenic 35.0%
GTTCTTGTAGAAAACGCATT+GGG + tig0015366:64740-64759 None:intergenic 35.0%
TGTTCTTGTAGAAAACGCAT+TGG + tig0015366:64741-64760 None:intergenic 35.0%
GAGTTCTCAAATCATGAACA+AGG - tig0015366:64840-64859 Msa1356030:CDS 35.0%
CAGGTGGTAGATTGTATCTA+CGG + tig0015366:63571-63590 None:intergenic 40.0%
! CCTATTATGGGCCATGATTT+TGG + tig0015366:63596-63615 None:intergenic 40.0%
CCAAAATCATGGCCCATAAT+AGG - tig0015366:63593-63612 Msa1356030:intron 40.0%
!!! TTTTTTAGTGAGCCCATGGA+GGG + tig0015366:63654-63673 None:intergenic 40.0%
!!! ATTTTTTAGTGAGCCCATGG+AGG + tig0015366:63655-63674 None:intergenic 40.0%
ATGGACCCATCATGCATTTA+TGG - tig0015366:63675-63694 Msa1356030:intron 40.0%
CCGAACCATAAATGCATGAT+GGG + tig0015366:63683-63702 None:intergenic 40.0%
CCCATCATGCATTTATGGTT+CGG - tig0015366:63680-63699 Msa1356030:intron 40.0%
!! GGAAAGCTTTGGCTATTTCT+GGG + tig0015366:63733-63752 None:intergenic 40.0%
! AGGAAAGCTTTGGCTATTTC+TGG + tig0015366:63734-63753 None:intergenic 40.0%
GTATTGGGACCAAGTAATGT+TGG + tig0015366:63828-63847 None:intergenic 40.0%
TTGCCAATATGGACCGTATT+GGG + tig0015366:63843-63862 None:intergenic 40.0%
!! TTACGAGCTTGTTGCCAATA+TGG + tig0015366:63854-63873 None:intergenic 40.0%
!!! GGTTTTGGGGAAGAAGTATT+TGG - tig0015366:64039-64058 Msa1356030:CDS 40.0%
CTTAATGGGGTCCTCAATAT+TGG - tig0015366:64127-64146 Msa1356030:CDS 40.0%
TAATGGGGTCCTCAATATTG+GGG - tig0015366:64129-64148 Msa1356030:CDS 40.0%
TGTGAAGAGAATGAAGGCTT+TGG - tig0015366:64192-64211 Msa1356030:CDS 40.0%
GTGAAGAGAATGAAGGCTTT+GGG - tig0015366:64193-64212 Msa1356030:CDS 40.0%
GTTTATGGAACATGTGTTGG+AGG - tig0015366:64231-64250 Msa1356030:CDS 40.0%
GTCTTGAAGTCAAACTTGAG+AGG - tig0015366:64338-64357 Msa1356030:CDS 40.0%
! CGGAGTGTTAAAACTCGATT+TGG + tig0015366:64565-64584 None:intergenic 40.0%
! CCTCTGAGTTAACACGATTT+TGG + tig0015366:64615-64634 None:intergenic 40.0%
CCAAAATCGTGTTAACTCAG+AGG - tig0015366:64612-64631 Msa1356030:CDS 40.0%
TCAGAGGTAAACTCGATTTC+TGG - tig0015366:64628-64647 Msa1356030:CDS 40.0%
!! CGATTTCTGGTAAAATCGGA+AGG - tig0015366:64641-64660 Msa1356030:CDS 40.0%
GAACTCGGAGAAGAAAGAAA+AGG + tig0015366:64826-64845 None:intergenic 40.0%
CAGGTGGTAGATTGTATCTA+CGG + tig0015366:63571-63590 None:intergenic 40.0%
! CCTATTATGGGCCATGATTT+TGG + tig0015366:63596-63615 None:intergenic 40.0%
CCAAAATCATGGCCCATAAT+AGG - tig0015366:63593-63612 Msa1356030:intron 40.0%
!!! TTTTTTAGTGAGCCCATGGA+GGG + tig0015366:63654-63673 None:intergenic 40.0%
!!! ATTTTTTAGTGAGCCCATGG+AGG + tig0015366:63655-63674 None:intergenic 40.0%
ATGGACCCATCATGCATTTA+TGG - tig0015366:63675-63694 Msa1356030:intron 40.0%
CCGAACCATAAATGCATGAT+GGG + tig0015366:63683-63702 None:intergenic 40.0%
CCCATCATGCATTTATGGTT+CGG - tig0015366:63680-63699 Msa1356030:intron 40.0%
!! GGAAAGCTTTGGCTATTTCT+GGG + tig0015366:63733-63752 None:intergenic 40.0%
! AGGAAAGCTTTGGCTATTTC+TGG + tig0015366:63734-63753 None:intergenic 40.0%
GTATTGGGACCAAGTAATGT+TGG + tig0015366:63828-63847 None:intergenic 40.0%
TTGCCAATATGGACCGTATT+GGG + tig0015366:63843-63862 None:intergenic 40.0%
!! TTACGAGCTTGTTGCCAATA+TGG + tig0015366:63854-63873 None:intergenic 40.0%
!!! GGTTTTGGGGAAGAAGTATT+TGG - tig0015366:64039-64058 Msa1356030:CDS 40.0%
CTTAATGGGGTCCTCAATAT+TGG - tig0015366:64127-64146 Msa1356030:CDS 40.0%
TAATGGGGTCCTCAATATTG+GGG - tig0015366:64129-64148 Msa1356030:CDS 40.0%
TGTGAAGAGAATGAAGGCTT+TGG - tig0015366:64192-64211 Msa1356030:CDS 40.0%
GTGAAGAGAATGAAGGCTTT+GGG - tig0015366:64193-64212 Msa1356030:CDS 40.0%
GTTTATGGAACATGTGTTGG+AGG - tig0015366:64231-64250 Msa1356030:CDS 40.0%
GTCTTGAAGTCAAACTTGAG+AGG - tig0015366:64338-64357 Msa1356030:CDS 40.0%
! CGGAGTGTTAAAACTCGATT+TGG + tig0015366:64565-64584 None:intergenic 40.0%
! CCTCTGAGTTAACACGATTT+TGG + tig0015366:64615-64634 None:intergenic 40.0%
CCAAAATCGTGTTAACTCAG+AGG - tig0015366:64612-64631 Msa1356030:CDS 40.0%
TCAGAGGTAAACTCGATTTC+TGG - tig0015366:64628-64647 Msa1356030:CDS 40.0%
!! CGATTTCTGGTAAAATCGGA+AGG - tig0015366:64641-64660 Msa1356030:CDS 40.0%
GAACTCGGAGAAGAAAGAAA+AGG + tig0015366:64826-64845 None:intergenic 40.0%
GTGGTAGATTGTATCTACGG+CGG + tig0015366:63568-63587 None:intergenic 45.0%
CGTAGATACAATCTACCACC+TGG - tig0015366:63569-63588 Msa1356030:intron 45.0%
TACCACCTGGTCCAAAATCA+TGG - tig0015366:63582-63601 Msa1356030:intron 45.0%
GCCGAACCATAAATGCATGA+TGG + tig0015366:63684-63703 None:intergenic 45.0%
!! GGCTCTAAACCTGTCATTGT+AGG - tig0015366:63701-63720 Msa1356030:intron 45.0%
!!! GGACAGCGTCATTTGTTTTG+AGG + tig0015366:63754-63773 None:intergenic 45.0%
GTTGCCAATATGGACCGTAT+TGG + tig0015366:63844-63863 None:intergenic 45.0%
! TGGAGGAGCACATTGAAAGA+AGG - tig0015366:64248-64267 Msa1356030:CDS 45.0%
GAAGTCAAACTTGAGAGGCA+CGG - tig0015366:64343-64362 Msa1356030:CDS 45.0%
! CGGAGTCAAAGCTTTTACTC+AGG - tig0015366:64363-64382 Msa1356030:CDS 45.0%
GTGGTAGATTGTATCTACGG+CGG + tig0015366:63568-63587 None:intergenic 45.0%
CGTAGATACAATCTACCACC+TGG - tig0015366:63569-63588 Msa1356030:intron 45.0%
TACCACCTGGTCCAAAATCA+TGG - tig0015366:63582-63601 Msa1356030:intron 45.0%
GCCGAACCATAAATGCATGA+TGG + tig0015366:63684-63703 None:intergenic 45.0%
!! GGCTCTAAACCTGTCATTGT+AGG - tig0015366:63701-63720 Msa1356030:intron 45.0%
!!! GGACAGCGTCATTTGTTTTG+AGG + tig0015366:63754-63773 None:intergenic 45.0%
GTTGCCAATATGGACCGTAT+TGG + tig0015366:63844-63863 None:intergenic 45.0%
! TGGAGGAGCACATTGAAAGA+AGG - tig0015366:64248-64267 Msa1356030:CDS 45.0%
GAAGTCAAACTTGAGAGGCA+CGG - tig0015366:64343-64362 Msa1356030:CDS 45.0%
! CGGAGTCAAAGCTTTTACTC+AGG - tig0015366:64363-64382 Msa1356030:CDS 45.0%
GTAGATTGTATCTACGGCGG+TGG + tig0015366:63565-63584 None:intergenic 50.0%
! ATGGGCCATGATTTTGGACC+AGG + tig0015366:63590-63609 None:intergenic 50.0%
TCCCACATCAATCCCTCCAT+GGG - tig0015366:63639-63658 Msa1356030:intron 50.0%
GGGCTTGATCCTACAATGAC+AGG + tig0015366:63713-63732 None:intergenic 50.0%
ACAAATGACGCTGTCCTTGC+TGG - tig0015366:63758-63777 Msa1356030:intron 50.0%
CAAATGACGCTGTCCTTGCT+GGG - tig0015366:63759-63778 Msa1356030:intron 50.0%
GGTCCCAATACGGTCCATAT+TGG - tig0015366:63837-63856 Msa1356030:intron 50.0%
GTAGATTGTATCTACGGCGG+TGG + tig0015366:63565-63584 None:intergenic 50.0%
! ATGGGCCATGATTTTGGACC+AGG + tig0015366:63590-63609 None:intergenic 50.0%
TCCCACATCAATCCCTCCAT+GGG - tig0015366:63639-63658 Msa1356030:intron 50.0%
GGGCTTGATCCTACAATGAC+AGG + tig0015366:63713-63732 None:intergenic 50.0%
ACAAATGACGCTGTCCTTGC+TGG - tig0015366:63758-63777 Msa1356030:intron 50.0%
CAAATGACGCTGTCCTTGCT+GGG - tig0015366:63759-63778 Msa1356030:intron 50.0%
GGTCCCAATACGGTCCATAT+TGG - tig0015366:63837-63856 Msa1356030:intron 50.0%
TACGGCGGTGGAGACAAAGA+CGG + tig0015366:63553-63572 None:intergenic 55.0%
! GGCCATGATTTTGGACCAGG+TGG + tig0015366:63587-63606 None:intergenic 55.0%
CTCCCACATCAATCCCTCCA+TGG - tig0015366:63638-63657 Msa1356030:intron 55.0%
GCCCATGGAGGGATTGATGT+GGG + tig0015366:63643-63662 None:intergenic 55.0%
AGCCCATGGAGGGATTGATG+TGG + tig0015366:63644-63663 None:intergenic 55.0%
ACCACCACCGTAACCCTAAC+CGG + tig0015366:64874-64893 None:intergenic 55.0%
TACGGCGGTGGAGACAAAGA+CGG + tig0015366:63553-63572 None:intergenic 55.0%
! GGCCATGATTTTGGACCAGG+TGG + tig0015366:63587-63606 None:intergenic 55.0%
CTCCCACATCAATCCCTCCA+TGG - tig0015366:63638-63657 Msa1356030:intron 55.0%
GCCCATGGAGGGATTGATGT+GGG + tig0015366:63643-63662 None:intergenic 55.0%
AGCCCATGGAGGGATTGATG+TGG + tig0015366:63644-63663 None:intergenic 55.0%
ACCACCACCGTAACCCTAAC+CGG + tig0015366:64874-64893 None:intergenic 55.0%
GGCGGCGGGTAAAGAGAAGA+AGG + tig0015366:63532-63551 None:intergenic 60.0%
ATGACGCTGTCCTTGCTGGG+CGG - tig0015366:63762-63781 Msa1356030:intron 60.0%
AGAATTTGGGCCGCCCAGCA+AGG + tig0015366:63775-63794 None:intergenic 60.0%
! CATGAACAAGGGTGCGACGC+CGG - tig0015366:64852-64871 Msa1356030:CDS 60.0%
! TGCGACGCCGGTTAGGGTTA+CGG - tig0015366:64864-64883 Msa1356030:CDS 60.0%
GGCGGCGGGTAAAGAGAAGA+AGG + tig0015366:63532-63551 None:intergenic 60.0%
ATGACGCTGTCCTTGCTGGG+CGG - tig0015366:63762-63781 Msa1356030:intron 60.0%
AGAATTTGGGCCGCCCAGCA+AGG + tig0015366:63775-63794 None:intergenic 60.0%
! CATGAACAAGGGTGCGACGC+CGG - tig0015366:64852-64871 Msa1356030:CDS 60.0%
! TGCGACGCCGGTTAGGGTTA+CGG - tig0015366:64864-64883 Msa1356030:CDS 60.0%
GTGGAGACAAAGACGGCGGC+GGG + tig0015366:63546-63565 None:intergenic 65.0%
GGTGGAGACAAAGACGGCGG+CGG + tig0015366:63547-63566 None:intergenic 65.0%
GGCGGTGGAGACAAAGACGG+CGG + tig0015366:63550-63569 None:intergenic 65.0%
GGGCGGCCCAAATTCTCTGC+TGG - tig0015366:63779-63798 Msa1356030:intron 65.0%
! ACAAGGGTGCGACGCCGGTT+AGG - tig0015366:64857-64876 Msa1356030:CDS 65.0%
! CAAGGGTGCGACGCCGGTTA+GGG - tig0015366:64858-64877 Msa1356030:CDS 65.0%
! GACGCCGGTTAGGGTTACGG+TGG - tig0015366:64867-64886 Msa1356030:CDS 65.0%
GCCGGTTAGGGTTACGGTGG+TGG - tig0015366:64870-64889 Msa1356030:CDS 65.0%
GTGGAGACAAAGACGGCGGC+GGG + tig0015366:63546-63565 None:intergenic 65.0%
GGTGGAGACAAAGACGGCGG+CGG + tig0015366:63547-63566 None:intergenic 65.0%
GGCGGTGGAGACAAAGACGG+CGG + tig0015366:63550-63569 None:intergenic 65.0%
GGGCGGCCCAAATTCTCTGC+TGG - tig0015366:63779-63798 Msa1356030:intron 65.0%
! ACAAGGGTGCGACGCCGGTT+AGG - tig0015366:64857-64876 Msa1356030:CDS 65.0%
! CAAGGGTGCGACGCCGGTTA+GGG - tig0015366:64858-64877 Msa1356030:CDS 65.0%
! GACGCCGGTTAGGGTTACGG+TGG - tig0015366:64867-64886 Msa1356030:CDS 65.0%
GCCGGTTAGGGTTACGGTGG+TGG - tig0015366:64870-64889 Msa1356030:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0015366 gene 63470 64939 63470 ID=Msa1356030;Name=Msa1356030
tig0015366 mRNA 63470 64939 63470 ID=Msa1356030-mRNA-1;Parent=Msa1356030;Name=Msa1356030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.5|1|1|2|0|330
tig0015366 exon 64025 64939 64025 ID=Msa1356030-mRNA-1:exon:9705;Parent=Msa1356030-mRNA-1
tig0015366 exon 63470 63547 63470 ID=Msa1356030-mRNA-1:exon:9704;Parent=Msa1356030-mRNA-1
tig0015366 CDS 64025 64939 64025 ID=Msa1356030-mRNA-1:cds;Parent=Msa1356030-mRNA-1
tig0015366 CDS 63470 63547 63470 ID=Msa1356030-mRNA-1:cds;Parent=Msa1356030-mRNA-1
Gene Sequence

>Msa1356030

ATGGTAGTAGAATTATTGCCACTTCCTAATTGGGTCATTTTTTTTACAACATTTATCGTCCTTCTTCTCTTTACCCGCCGCCGTCTTTGTCTCCACCGCCGTAGATACAATCTACCACCTGGTCCAAAATCATGGCCCATAATAGGAAATCTCAATCTTATTGGATCACTCCCACATCAATCCCTCCATGGGCTCACTAAAAAATATGGACCCATCATGCATTTATGGTTCGGCTCTAAACCTGTCATTGTAGGATCAAGCCCAGAAATAGCCAAAGCTTTCCTCAAAACAAATGACGCTGTCCTTGCTGGGCGGCCCAAATTCTCTGCTGGAAAATATACTACTTATAACTACTCCAACATTACTTGGTCCCAATACGGTCCATATTGGCAACAAGCTCGTAAAATGTGTTTACTAGAACTGTTTAGTGTAAAACGCCTTGAGTCTTATGAGTACATGAGAAAACAAGAGTTACATGCTTTTTTGCATGAACTATTCAACTCAAAAAACAAAACAATTTTGTTGAAGGACCATCTTTCAACTTTGAGTCTCAATGTTATAAGTCGCATGGTTTTGGGGAAGAAGTATTTGGAGAAGAGTGAAAATGCTATTATTTCCCCTGAAGAGTTTAAGAAGATGTTGGATGAATTGTTTTTGCTTAATGGGGTCCTCAATATTGGGGATTTTATTCCTTGGATTCATTTCTTAGACTTGCAAGGTTATGTGAAGAGAATGAAGGCTTTGGGTAAGAAGTTTGATTGGTTTATGGAACATGTGTTGGAGGAGCACATTGAAAGAAGGAAATGTGTTAATGATTATGTTGCTAAAGATATGGTGGATGTGCTTTTGAAGCTTGCTGAGAATCCTAGTCTTGAAGTCAAACTTGAGAGGCACGGAGTCAAAGCTTTTACTCAGGGTGCGACGCCGGTTAGGGTTACGGTGGTGGTGTTTGTTGACCTTTTGAAGAAACTAACTAGTTTATTTTTTAGATAG
Protein sequence

>Msa1356030

MVVELLPLPNWVIFFTTFIVLLLFTRRRLCLHRRRYNLPPGPKSWPIIGNLNLIGSLPHQSLHGLTKKYGPIMHLWFGSKPVIVGSSPEIAKAFLKTNDAVLAGRPKFSAGKYTTYNYSNITWSQYGPYWQQARKMCLLELFSVKRLESYEYMRKQELHAFLHELFNSKNKTILLKDHLSTLSLNVISRMVLGKKYLEKSENAIISPEEFKKMLDELFLLNGVLNIGDFIPWIHFLDLQGYVKRMKALGKKFDWFMEHVLEEHIERRKCVNDYVAKDMVDVLLKLAENPSLEVKLERHGVKAFTQGATPVRVTVVVFVDLLKKLTSLFFR*