Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356280 | XP_013461183.1 | 89.868 | 454 | 39 | 3 | 40 | 493 | 19 | 465 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356280 | A0A072V080 | 89.868 | 454 | 39 | 3 | 40 | 493 | 19 | 465 | 0.0 | 828 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372220 | Msa1356280 | 0.842399 | 2.647952e-58 | -8.615850e-47 |
| Msa0512390 | Msa1356280 | 0.866278 | 3.203767e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356280 | MtrunA17_Chr3g0120561 | 87.879 | 462 | 40 | 4 | 40 | 493 | 19 | 472 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356280 | AT1G02960.2 | 33.623 | 345 | 193 | 11 | 167 | 490 | 142 | 471 | 1.06e-40 | 152 |
| Msa1356280 | AT1G02960.1 | 32.464 | 345 | 188 | 12 | 167 | 490 | 142 | 462 | 3.72e-37 | 142 |
| Msa1356280 | AT1G02960.5 | 31.387 | 274 | 155 | 9 | 167 | 421 | 142 | 401 | 1.36e-21 | 97.4 |
| Msa1356280 | AT1G02960.3 | 29.927 | 274 | 150 | 10 | 167 | 421 | 142 | 392 | 2.91e-18 | 87.4 |
| Msa1356280 | AT1G02960.6 | 29.249 | 253 | 146 | 9 | 167 | 400 | 142 | 380 | 3.94e-12 | 68.2 |
| Msa1356280 | AT1G02960.4 | 29.249 | 253 | 146 | 9 | 167 | 400 | 142 | 380 | 3.94e-12 | 68.2 |
Find 120 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTAAAATTCAGGTGAATT+TGG | 0.182393 | tig0015546:+36806 | Msa1356280:intron |
| GATAGATTTCACAATGCTTT+AGG | 0.198003 | tig0015546:+36347 | Msa1356280:CDS |
| GCGCGATTAGATTTGTTAAA+AGG | 0.237162 | tig0015546:+33087 | Msa1356280:CDS |
| CACTCAGAAGACAGCATTTC+CGG | 0.253174 | tig0015546:+32813 | Msa1356280:CDS |
| ATAGATTTCACAATGCTTTA+GGG | 0.281106 | tig0015546:+36348 | Msa1356280:CDS |
| TCAACAGCTTTCATAATTTC+AGG | 0.309850 | tig0015546:-35799 | None:intergenic |
| GGAGGTGATGAAGATGTAAT+TGG | 0.311573 | tig0015546:-32855 | None:intergenic |
| TAATGAAGGTGATTAGATTA+AGG | 0.321095 | tig0015546:-32876 | None:intergenic |
| GATCCGCTATCCACAGGTTC+AGG | 0.328904 | tig0015546:-36172 | None:intergenic |
| AGGCCTTCTGCAAGTTTAGA+TGG | 0.329905 | tig0015546:+35826 | Msa1356280:CDS |
| GCGTAATGGTCGTCGTCATC+TGG | 0.339375 | tig0015546:-32907 | None:intergenic |
| GGGAGAGGTGGTTGCTGATT+CGG | 0.356470 | tig0015546:+34146 | Msa1356280:CDS |
| TGAGTTTAATCTTCCCCTAA+TGG | 0.371118 | tig0015546:+35924 | Msa1356280:CDS |
| TCATCAGTGACACATAACTA+TGG | 0.371201 | tig0015546:+35739 | Msa1356280:CDS |
| AACTCTTGGACTAAAGATAA+TGG | 0.371714 | tig0015546:-37834 | None:intergenic |
| CTTGTACAAGCTAAAGGAAT+GGG | 0.378094 | tig0015546:+37782 | Msa1356280:CDS |
| TATACACTAACTTTACATCT+TGG | 0.380511 | tig0015546:-38421 | None:intergenic |
| TCTGACCACATGAATCAAAC+TGG | 0.383101 | tig0015546:-38138 | None:intergenic |
| CAACAACCGTCTCTGGCAAA+TGG | 0.384581 | tig0015546:-36135 | None:intergenic |
| TGATAACTGTTGCAGGCATC+TGG | 0.391339 | tig0015546:+35686 | Msa1356280:intron |
| CTTCAATCTCTAATATTGAT+AGG | 0.393259 | tig0015546:+35773 | Msa1356280:CDS |
| TGCATTTCAATGGACCTTAG+AGG | 0.395662 | tig0015546:+38381 | Msa1356280:three_prime_UTR |
| AGTAATTCTCATGTGTTGAT+TGG | 0.396579 | tig0015546:-36294 | None:intergenic |
| AATTGCATTTACCTCCTCTA+AGG | 0.402894 | tig0015546:-38395 | None:intergenic |
| CCACCTCTCCCAATTCATTC+CGG | 0.417889 | tig0015546:-34134 | None:intergenic |
| GGGAGAGGTGGTTGCTGATT+CGG | 0.418461 | tig0015546:+33584 | Msa1356280:intron |
| GGGTGACAACCGGAATGAAT+TGG | 0.424438 | tig0015546:+34125 | Msa1356280:CDS |
| TCACTGTCAACAACCGTCTC+TGG | 0.431199 | tig0015546:-36142 | None:intergenic |
| TTATGAAAGCTGTTGATCAT+AGG | 0.434946 | tig0015546:+35806 | Msa1356280:CDS |
| AATGAATAAGTAGAAATTAC+CGG | 0.438451 | tig0015546:-32832 | None:intergenic |
| TCATCATTTCTGATAAATTG+AGG | 0.438657 | tig0015546:-34624 | None:intergenic |
| AGTGAATAGAATAGCAAATT+CGG | 0.442548 | tig0015546:+38233 | Msa1356280:three_prime_UTR |
| TCAACATTGTCGCAAACTCT+TGG | 0.448555 | tig0015546:-37848 | None:intergenic |
| GGTGACAACCGGAATGAATT+GGG | 0.448874 | tig0015546:+34126 | Msa1356280:CDS |
| GGGCGTGGGTTGCATTTCAA+TGG | 0.449531 | tig0015546:+38371 | Msa1356280:three_prime_UTR |
| ACAACAACAACTACCTCTTC+CGG | 0.454301 | tig0015546:+33065 | Msa1356280:CDS |
| TCAGTAACATAGAGGCTTCA+AGG | 0.455476 | tig0015546:-38453 | None:intergenic |
| CATCATTTCTGATAAATTGA+GGG | 0.460688 | tig0015546:-34623 | None:intergenic |
| CCACGTGATAATCAAAGAAA+AGG | 0.463174 | tig0015546:+36076 | Msa1356280:CDS |
| CTTACCACGGAGGGTGAATA+CGG | 0.464811 | tig0015546:-37892 | None:intergenic |
| CAAGCTAAAGGAATGGGGTT+TGG | 0.465002 | tig0015546:+37788 | Msa1356280:CDS |
| TAAGCGTGAACGAACCTTGT+TGG | 0.467219 | tig0015546:-32959 | None:intergenic |
| GGATTAAGCTCCCCACTTCA+AGG | 0.468431 | tig0015546:-37871 | None:intergenic |
| GGGTTTGGTGGCAGCAAAGA+TGG | 0.469797 | tig0015546:+37803 | Msa1356280:CDS |
| AACAACCGTCTCTGGCAAAT+GGG | 0.479682 | tig0015546:-36134 | None:intergenic |
| AAATCTAATCGCGCCGGAAG+AGG | 0.480654 | tig0015546:-33078 | None:intergenic |
| ACACATGAGAATTACTTTCC+CGG | 0.482287 | tig0015546:+36301 | Msa1356280:CDS |
| CACATGAGAATTACTTTCCC+GGG | 0.495518 | tig0015546:+36302 | Msa1356280:CDS |
| ATCTGGAAATTGATTAATGA+AGG | 0.499518 | tig0015546:-32890 | None:intergenic |
| AGCTTCAGTTTCAGAAGGCT+CGG | 0.501715 | tig0015546:-35893 | None:intergenic |
| TTCTCAAAAGCAAATTCATC+CGG | 0.509214 | tig0015546:+34717 | Msa1356280:CDS |
| ACACCTTTGAATTGATGTAA+AGG | 0.511685 | tig0015546:+38286 | Msa1356280:three_prime_UTR |
| ACTTCAATGAGGGTGACAAC+CGG | 0.512111 | tig0015546:+34115 | Msa1356280:CDS |
| TTTCCTTTACATCAATTCAA+AGG | 0.512245 | tig0015546:-38289 | None:intergenic |
| CCTCCTGGATAAGACTGATC+TGG | 0.514851 | tig0015546:+35963 | Msa1356280:CDS |
| TCTTGTACAAGCTAAAGGAA+TGG | 0.516822 | tig0015546:+37781 | Msa1356280:CDS |
| GCTAAAGGAATGGGGTTTGG+TGG | 0.518261 | tig0015546:+37791 | Msa1356280:CDS |
| CCACCAGATCAGTCTTATCC+AGG | 0.521993 | tig0015546:-35966 | None:intergenic |
| AAACAATCAGCTTTCCATCC+AGG | 0.522382 | tig0015546:-36859 | None:intergenic |
| AGATGAGGAGGTTGAAATGC+CGG | 0.528294 | tig0015546:+34092 | Msa1356280:CDS |
| CTATCAATATTAGAGATTGA+AGG | 0.532326 | tig0015546:-35772 | None:intergenic |
| ACGAAAGAAGATTAGCGTAA+TGG | 0.532658 | tig0015546:-32921 | None:intergenic |
| ACACATAACTATGGGCTCAC+TGG | 0.533383 | tig0015546:+35748 | Msa1356280:CDS |
| TTGTCACCCTCATTGAAGTC+CGG | 0.534546 | tig0015546:-34111 | None:intergenic |
| CTGACCACATGAATCAAACT+GGG | 0.538852 | tig0015546:-38137 | None:intergenic |
| ATCCGCTATCCACAGGTTCA+GGG | 0.539339 | tig0015546:-36171 | None:intergenic |
| TCTGTTATCGCTGAAAGTGT+TGG | 0.540296 | tig0015546:+36377 | Msa1356280:CDS |
| AAGCATCATTTCAAGATACC+TGG | 0.547835 | tig0015546:+36841 | Msa1356280:CDS |
| TTTCATCCTCAGTAACATAG+AGG | 0.548157 | tig0015546:-38461 | None:intergenic |
| CTTGATGATCCGCTATCCAC+AGG | 0.549070 | tig0015546:-36178 | None:intergenic |
| GGTCGTAATCATGCTGCTGA+TGG | 0.558737 | tig0015546:+38501 | Msa1356280:three_prime_UTR |
| CATCAGTGACACATAACTAT+GGG | 0.566059 | tig0015546:+35740 | Msa1356280:CDS |
| GAACAGGAAGGAAGTTCAAG+TGG | 0.574315 | tig0015546:+38068 | Msa1356280:intron |
| AACGAACCTTGTTGGTAGCG+TGG | 0.586095 | tig0015546:-32951 | None:intergenic |
| TTTCAGAGAAATAAGAACAC+AGG | 0.586673 | tig0015546:-38107 | None:intergenic |
| CGACAATGTTGACCTTGAAG+TGG | 0.588515 | tig0015546:+37859 | Msa1356280:CDS |
| TGAAGGTGATTAGATTAAGG+AGG | 0.589732 | tig0015546:-32873 | None:intergenic |
| CAAGCTGGAGCTAGACCAGA+TGG | 0.589856 | tig0015546:+36592 | Msa1356280:CDS |
| CCGGAATGAATTGGGAGAGG+TGG | 0.590158 | tig0015546:+34134 | Msa1356280:CDS |
| TCTCGAAGATGATGACATAG+TGG | 0.595575 | tig0015546:+35855 | Msa1356280:CDS |
| TTTGGAGGAGTCTGGTCGAG+AGG | 0.597323 | tig0015546:-34593 | None:intergenic |
| TATATCCCATTTGCCAGAGA+CGG | 0.597841 | tig0015546:+36129 | Msa1356280:CDS |
| TCAGAAGTTGCTCGAAGATG+AGG | 0.601211 | tig0015546:+34077 | Msa1356280:intron |
| GAAATGCTGTCTTCTGAGTG+TGG | 0.604310 | tig0015546:-32810 | None:intergenic |
| TGACGACTCCCCTGAACCTG+TGG | 0.607193 | tig0015546:+36162 | Msa1356280:CDS |
| GGGAAAGAAAATGCAGACAA+TGG | 0.609349 | tig0015546:+36322 | Msa1356280:CDS |
| GGACGAGCTTCAGTTTCAGA+AGG | 0.609678 | tig0015546:-35898 | None:intergenic |
| ATCATGATGATGTGTGTAGA+GGG | 0.610988 | tig0015546:-38546 | None:intergenic |
| TTGTACAAGCTAAAGGAATG+GGG | 0.611379 | tig0015546:+37783 | Msa1356280:CDS |
| CGGATCATCAAGTGACAATG+AGG | 0.613056 | tig0015546:+36189 | Msa1356280:CDS |
| GACAATGTTGACCTTGAAGT+GGG | 0.615907 | tig0015546:+37860 | Msa1356280:CDS |
| AGGCATCTGGAACAAAGCTA+AGG | 0.618629 | tig0015546:+35699 | Msa1356280:intron |
| CAACCGGAATGAATTGGGAG+AGG | 0.619194 | tig0015546:+34131 | Msa1356280:CDS |
| ATTCTATTCACTACAAACAG+AGG | 0.619409 | tig0015546:-38222 | None:intergenic |
| ACAAAACCACGCTACCAACA+AGG | 0.621213 | tig0015546:+32945 | Msa1356280:CDS |
| TCCCCTGAACCTGTGGATAG+CGG | 0.621484 | tig0015546:+36169 | Msa1356280:CDS |
| TGAAATGCCGGACTTCAATG+AGG | 0.626528 | tig0015546:+34104 | Msa1356280:CDS |
| TTTCCATCTAAACTTGCAGA+AGG | 0.628441 | tig0015546:-35829 | None:intergenic |
| TTTAACAAATCTAATCGCGC+CGG | 0.629342 | tig0015546:-33084 | None:intergenic |
| AGGGGAAGATTAAACTCATG+TGG | 0.635532 | tig0015546:-35919 | None:intergenic |
| TCCGCTATCCACAGGTTCAG+GGG | 0.635538 | tig0015546:-36170 | None:intergenic |
| ATTTCAATGGACCTTAGAGG+AGG | 0.635630 | tig0015546:+38384 | Msa1356280:three_prime_UTR |
| TTGGAGCACATAACTCATTG+AGG | 0.636699 | tig0015546:+36396 | Msa1356280:CDS |
| AGATAATGTTTCTGAAGATG+AGG | 0.638275 | tig0015546:+34176 | Msa1356280:CDS |
| TTGAAGCCTCTATGTTACTG+AGG | 0.640878 | tig0015546:+38455 | Msa1356280:three_prime_UTR |
| CTCATTTAGCAAGTATACCG+AGG | 0.644633 | tig0015546:+36889 | Msa1356280:CDS |
| CATAGCAATCTTACCACGGA+GGG | 0.644759 | tig0015546:-37901 | None:intergenic |
| AACAGGAAGGAAGTTCAAGT+GGG | 0.650687 | tig0015546:+38069 | Msa1356280:intron |
| GAAGTTGCTCGAAGATGAGG+AGG | 0.651692 | tig0015546:+34080 | Msa1356280:intron |
| ATCATTTCAAGATACCTGGA+TGG | 0.654090 | tig0015546:+36845 | Msa1356280:CDS |
| GAAATGCCGGACTTCAATGA+GGG | 0.659726 | tig0015546:+34105 | Msa1356280:CDS |
| GACCACATGAATCAAACTGG+GGG | 0.672181 | tig0015546:-38135 | None:intergenic |
| TATCATGATGATGTGTGTAG+AGG | 0.683605 | tig0015546:-38547 | None:intergenic |
| TGACCACATGAATCAAACTG+GGG | 0.686062 | tig0015546:-38136 | None:intergenic |
| AACACTTTCAGCGATAACAG+AGG | 0.693650 | tig0015546:-36375 | None:intergenic |
| CCAGATCAGTCTTATCCAGG+AGG | 0.693888 | tig0015546:-35963 | None:intergenic |
| AGATACTGTTTCTGACAATG+AGG | 0.697104 | tig0015546:+33614 | Msa1356280:CDS |
| TAATCCGTATTCACCCTCCG+TGG | 0.736498 | tig0015546:+37888 | Msa1356280:CDS |
| ACATAGCAATCTTACCACGG+AGG | 0.757199 | tig0015546:-37902 | None:intergenic |
| ACAATGTTGACCTTGAAGTG+GGG | 0.758346 | tig0015546:+37861 | Msa1356280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAGTAATTAATTAATATTT+AGG | - | tig0015546:33115-33134 | None:intergenic | 10.0% |
| !!! | TTTTTTGAAAGAAATAATTT+CGG | + | tig0015546:34321-34340 | Msa1356280:intron | 10.0% |
| !!! | TATTTTTTATATTTTCATCT+CGG | + | tig0015546:35104-35123 | Msa1356280:intron | 10.0% |
| !!! | AGATTTACTTTTTTTTTTTT+TGG | + | tig0015546:35584-35603 | Msa1356280:intron | 10.0% |
| !!! | GAAATTTTAATTTATTCATT+TGG | + | tig0015546:38480-38499 | Msa1356280:three_prime_UTR | 10.0% |
| !!! | ATGATTTTATCTTTTATGTT+TGG | + | tig0015546:33723-33742 | Msa1356280:intron | 15.0% |
| !! | TCATATTAGTTCATAAATAA+TGG | - | tig0015546:33941-33960 | None:intergenic | 15.0% |
| !!! | TATCTTTTCTTTATTCTTAA+AGG | + | tig0015546:34004-34023 | Msa1356280:intron | 15.0% |
| !!! | ATCTTTTCTTTATTCTTAAA+GGG | + | tig0015546:34005-34024 | Msa1356280:intron | 15.0% |
| !! | TTGTAATTGTAATTAAATGA+GGG | - | tig0015546:34039-34058 | None:intergenic | 15.0% |
| !! | ATTGTAATTGTAATTAAATG+AGG | - | tig0015546:34040-34059 | None:intergenic | 15.0% |
| !!! | TATCGTTTCTTTATTTTTAA+AGG | + | tig0015546:34560-34579 | Msa1356280:intron | 15.0% |
| !!! | ATCGTTTCTTTATTTTTAAA+GGG | + | tig0015546:34561-34580 | Msa1356280:intron | 15.0% |
| !!! | AATTAATCATAGTTCTAAAA+GGG | - | tig0015546:34978-34997 | None:intergenic | 15.0% |
| !!! | TAATTAATCATAGTTCTAAA+AGG | - | tig0015546:34979-34998 | None:intergenic | 15.0% |
| !! | TAATTATATCAATGTTTGAA+TGG | + | tig0015546:35639-35658 | Msa1356280:intron | 15.0% |
| !!! | TGTTTTTTCTTTTCATTTTT+TGG | + | tig0015546:36709-36728 | Msa1356280:intron | 15.0% |
| !!! | GTTTTTTCTTTTCATTTTTT+GGG | + | tig0015546:36710-36729 | Msa1356280:intron | 15.0% |
| !!! | TTTTTAATAGTTTGTATGTT+GGG | + | tig0015546:37317-37336 | Msa1356280:intron | 15.0% |
| !!! | AATGATAATTTTACTTGAAA+TGG | + | tig0015546:37673-37692 | Msa1356280:intron | 15.0% |
| !! | CATAATCAAACATTAAATAA+GGG | - | tig0015546:37724-37743 | None:intergenic | 15.0% |
| !! | TCATAATCAAACATTAAATA+AGG | - | tig0015546:37725-37744 | None:intergenic | 15.0% |
| !! | AATGAATAAGTAGAAATTAC+CGG | - | tig0015546:32835-32854 | None:intergenic | 20.0% |
| !! | TTATTAATTCATTCTTACTC+AGG | + | tig0015546:33254-33273 | Msa1356280:intron | 20.0% |
| !!! | TACAATTATTATTGTTGTTG+TGG | + | tig0015546:33492-33511 | Msa1356280:intron | 20.0% |
| !! | AAAAAACATAAACAAACACA+TGG | - | tig0015546:33680-33699 | None:intergenic | 20.0% |
| !!! | TTATGTTTTTTCCTTTTGTT+TGG | + | tig0015546:33689-33708 | Msa1356280:intron | 20.0% |
| !!! | TATGTTTTTTCCTTTTGTTT+GGG | + | tig0015546:33690-33709 | Msa1356280:intron | 20.0% |
| !!! | GTCTTTGAAAGATATAATTT+CGG | + | tig0015546:33763-33782 | Msa1356280:intron | 20.0% |
| !! | TTATGTTAACATATGAGTAA+TGG | + | tig0015546:33786-33805 | Msa1356280:intron | 20.0% |
| !!! | TACAATTATTATTGTTGTTG+TGG | + | tig0015546:33492-33511 | Msa1356280:intron | 20.0% |
| !! | TTAATAACAACCAAACAAAA+GGG | - | tig0015546:34260-34279 | None:intergenic | 20.0% |
| !!! | GTGATTTTATCTTTTATGTT+TGG | + | tig0015546:34280-34299 | Msa1356280:intron | 20.0% |
| !! | TAACTAAACAATCTACATTT+AGG | - | tig0015546:34388-34407 | None:intergenic | 20.0% |
| !! | TCATATTAGTTCATAAACAA+TGG | - | tig0015546:34497-34516 | None:intergenic | 20.0% |
| !!! | AAATATTTTCAGTTTCAACA+GGG | - | tig0015546:34799-34818 | None:intergenic | 20.0% |
| !!! | AAACTGAAAATATTTGTTAG+TGG | + | tig0015546:34804-34823 | Msa1356280:intron | 20.0% |
| !!! | AACTGAAAATATTTGTTAGT+GGG | + | tig0015546:34805-34824 | Msa1356280:intron | 20.0% |
| !! | TGTTTCTTCAAAAAAGTAAA+TGG | + | tig0015546:35354-35373 | Msa1356280:intron | 20.0% |
| !! | AAAAAAGTAAATGGATGTTA+TGG | + | tig0015546:35363-35382 | Msa1356280:intron | 20.0% |
| !!! | ATATGTGACATTTTTAATGA+TGG | + | tig0015546:35393-35412 | Msa1356280:intron | 20.0% |
| !! | TTGACAATATTTGCAAAAAT+GGG | - | tig0015546:35428-35447 | None:intergenic | 20.0% |
| !! | ATTGACAATATTTGCAAAAA+TGG | - | tig0015546:35429-35448 | None:intergenic | 20.0% |
| !! | TGTAAAGAAAATATGTTAGA+GGG | - | tig0015546:35547-35566 | None:intergenic | 20.0% |
| !! | TTGTAAAGAAAATATGTTAG+AGG | - | tig0015546:35548-35567 | None:intergenic | 20.0% |
| !!! | CATATTTTCTTTACAAAAGA+TGG | + | tig0015546:35552-35571 | Msa1356280:intron | 20.0% |
| !! | TTACAAAGAAACTAAAATTC+AGG | + | tig0015546:36797-36816 | Msa1356280:intron | 20.0% |
| !!! | TGGAGTTTTTTATATTATCA+AGG | - | tig0015546:37094-37113 | None:intergenic | 20.0% |
| !!! | CTTTTTAATAGTTTGTATGT+TGG | + | tig0015546:37316-37335 | Msa1356280:intron | 20.0% |
| !! | TATAATAGAAAACTTAGTCT+TGG | - | tig0015546:37356-37375 | None:intergenic | 20.0% |
| !! | AATGTTTGATTATGATTTGA+TGG | + | tig0015546:37730-37749 | Msa1356280:intron | 20.0% |
| ! | TAATGAAGGTGATTAGATTA+AGG | - | tig0015546:32879-32898 | None:intergenic | 25.0% |
| ! | ATCTGGAAATTGATTAATGA+AGG | - | tig0015546:32893-32912 | None:intergenic | 25.0% |
| ! | AAACTTTAATACCTGAAATG+AGG | - | tig0015546:33228-33247 | None:intergenic | 25.0% |
| ! | GTTATTCTTATAAGCTATCT+TGG | + | tig0015546:33333-33352 | Msa1356280:intron | 25.0% |
| ! | TTAATAACAACCCAAACAAA+AGG | - | tig0015546:33703-33722 | None:intergenic | 25.0% |
| ! | ACTAAACCAATCTACATTTA+AGG | - | tig0015546:33830-33849 | None:intergenic | 25.0% |
| ! | CTTAATAACAACCAAACAAA+AGG | - | tig0015546:34261-34280 | None:intergenic | 25.0% |
| ! | TAATGTTAGCAAATGAGTAA+TGG | + | tig0015546:34344-34363 | Msa1356280:intron | 25.0% |
| ! | CATCATTTCTGATAAATTGA+GGG | - | tig0015546:34626-34645 | None:intergenic | 25.0% |
| ! | TCATCATTTCTGATAAATTG+AGG | - | tig0015546:34627-34646 | None:intergenic | 25.0% |
| !! | CAAATATTTTCAGTTTCAAC+AGG | - | tig0015546:34800-34819 | None:intergenic | 25.0% |
| !! | ACTGAAAATATTTGTTAGTG+GGG | + | tig0015546:34806-34825 | Msa1356280:intron | 25.0% |
| ! | TAATCTGTTAGTTATATCCT+GGG | - | tig0015546:35160-35179 | None:intergenic | 25.0% |
| ! | TTAATCTGTTAGTTATATCC+TGG | - | tig0015546:35161-35180 | None:intergenic | 25.0% |
| ! | CTATCAATATTAGAGATTGA+AGG | - | tig0015546:35775-35794 | None:intergenic | 25.0% |
| ! | CTTCAATCTCTAATATTGAT+AGG | + | tig0015546:35773-35792 | Msa1356280:CDS | 25.0% |
| ! | ATATACATGGAAAAGTAAAC+AGG | - | tig0015546:36029-36048 | None:intergenic | 25.0% |
| !! | TATTAGTCTATTGTCATATC+TGG | + | tig0015546:36243-36262 | Msa1356280:intron | 25.0% |
| ! | TTAAATCTGTTTACTTGTAC+AGG | + | tig0015546:36268-36287 | Msa1356280:intron | 25.0% |
| ! | ATAGATTTCACAATGCTTTA+GGG | + | tig0015546:36348-36367 | Msa1356280:CDS | 25.0% |
| ! | TTCAATTGCATAAAAATACC+AGG | - | tig0015546:36438-36457 | None:intergenic | 25.0% |
| ! | AATATTTGAAAAACTACAGC+AGG | + | tig0015546:36522-36541 | Msa1356280:CDS | 25.0% |
| !!! | TTTCTTTTCATTTTTTGGGT+TGG | + | tig0015546:36714-36733 | Msa1356280:intron | 25.0% |
| !!! | TTCTTTTCATTTTTTGGGTT+GGG | + | tig0015546:36715-36734 | Msa1356280:intron | 25.0% |
| !!! | ACATTTGTTTCTAATACACA+TGG | + | tig0015546:36759-36778 | Msa1356280:intron | 25.0% |
| ! | AACTAAAATTCAGGTGAATT+TGG | + | tig0015546:36806-36825 | Msa1356280:intron | 25.0% |
| !!! | GTGAAGTTTTATAAATCCAT+AGG | + | tig0015546:36911-36930 | Msa1356280:intron | 25.0% |
| ! | GTATAAAGCATAAACTTTCA+GGG | - | tig0015546:36959-36978 | None:intergenic | 25.0% |
| ! | AGTATAAAGCATAAACTTTC+AGG | - | tig0015546:36960-36979 | None:intergenic | 25.0% |
| !!! | TTTATACTTAAGAAAGTGCT+TGG | + | tig0015546:36972-36991 | Msa1356280:intron | 25.0% |
| !!! | TTATACTTAAGAAAGTGCTT+GGG | + | tig0015546:36973-36992 | Msa1356280:intron | 25.0% |
| ! | AGAAACTTTCTATTAGAAAG+TGG | - | tig0015546:37114-37133 | None:intergenic | 25.0% |
| !! | TAAGGGTATATCTTAAATGT+AGG | - | tig0015546:37707-37726 | None:intergenic | 25.0% |
| ! | TTTGATTATGATTTGATGGA+AGG | + | tig0015546:37734-37753 | Msa1356280:intron | 25.0% |
| !! | AATTTTCTTGTACAAGCTAA+AGG | + | tig0015546:37776-37795 | Msa1356280:CDS | 25.0% |
| !! | TTCTTGATCTATTTCAGTTT+TGG | + | tig0015546:38040-38059 | Msa1356280:intron | 25.0% |
| ! | AGTGAATAGAATAGCAAATT+CGG | + | tig0015546:38233-38252 | Msa1356280:three_prime_UTR | 25.0% |
| ! | TTTCCTTTACATCAATTCAA+AGG | - | tig0015546:38292-38311 | None:intergenic | 25.0% |
| ! | TGCAATTTCGATAGTAAAAA+AGG | + | tig0015546:38349-38368 | Msa1356280:three_prime_UTR | 25.0% |
| ! | GCAATTTCGATAGTAAAAAA+GGG | + | tig0015546:38350-38369 | Msa1356280:three_prime_UTR | 25.0% |
| ! | CAATTTCGATAGTAAAAAAG+GGG | + | tig0015546:38351-38370 | Msa1356280:three_prime_UTR | 25.0% |
| ! | TATACACTAACTTTACATCT+TGG | - | tig0015546:38424-38443 | None:intergenic | 25.0% |
| AATCTACATTTAAGGACATC+AGG | - | tig0015546:33822-33841 | None:intergenic | 30.0% | |
| TGATGTCCTTAAATGTAGAT+TGG | + | tig0015546:33821-33840 | Msa1356280:intron | 30.0% | |
| AAATTAGTCCTTGTGATTTG+AGG | + | tig0015546:33851-33870 | Msa1356280:intron | 30.0% | |
| ATGACCAACATTGTATCTTT+CGG | + | tig0015546:33957-33976 | Msa1356280:intron | 30.0% | |
| ! | AGATAATGTTTCTGAAGATG+AGG | + | tig0015546:34176-34195 | Msa1356280:CDS | 30.0% |
| TTGTTACCATGTGTTTGTTT+AGG | + | tig0015546:33671-33690 | Msa1356280:intron | 30.0% | |
| GAAATACCTAAACAAACACA+TGG | - | tig0015546:34238-34257 | None:intergenic | 30.0% | |
| ! | TTAGGTATTTCCCTTTTGTT+TGG | + | tig0015546:34247-34266 | Msa1356280:intron | 30.0% |
| ! | TAAATTGAGGGCCATATTTT+TGG | - | tig0015546:34614-34633 | None:intergenic | 30.0% |
| TTCTCAAAAGCAAATTCATC+CGG | + | tig0015546:34717-34736 | Msa1356280:CDS | 30.0% | |
| ! | CAAGAAAAATGCTAGTTTCT+GGG | + | tig0015546:34749-34768 | Msa1356280:intron | 30.0% |
| ! | TTTATGCTCTGAATTGAGTA+AGG | + | tig0015546:34947-34966 | Msa1356280:intron | 30.0% |
| TAAGTGATGTTAAGTTCTGT+AGG | + | tig0015546:35039-35058 | Msa1356280:intron | 30.0% | |
| !! | ATGACTTTTATTTCCCCTAT+TGG | + | tig0015546:35129-35148 | Msa1356280:intron | 30.0% |
| !! | TATTTTAGATATACCCTGTG+TGG | + | tig0015546:35230-35249 | Msa1356280:intron | 30.0% |
| TTGAATTTCAAATCCACACA+GGG | - | tig0015546:35246-35265 | None:intergenic | 30.0% | |
| TTTGAATTTCAAATCCACAC+AGG | - | tig0015546:35247-35266 | None:intergenic | 30.0% | |
| ACTTCTCTTCATGTATCAAA+AGG | - | tig0015546:35458-35477 | None:intergenic | 30.0% | |
| TCAACAGCTTTCATAATTTC+AGG | - | tig0015546:35802-35821 | None:intergenic | 30.0% | |
| TTATGAAAGCTGTTGATCAT+AGG | + | tig0015546:35806-35825 | Msa1356280:CDS | 30.0% | |
| AAACAGGTGTCAAAGAATAA+CGG | - | tig0015546:36013-36032 | None:intergenic | 30.0% | |
| ! | AATGAGGTATTACTGTTCTA+TGG | + | tig0015546:36205-36224 | Msa1356280:intron | 30.0% |
| ! | AGTAATTCTCATGTGTTGAT+TGG | - | tig0015546:36297-36316 | None:intergenic | 30.0% |
| GATAGATTTCACAATGCTTT+AGG | + | tig0015546:36347-36366 | Msa1356280:CDS | 30.0% | |
| CTCATTGAGGTATAAAATTG+TGG | + | tig0015546:36409-36428 | Msa1356280:intron | 30.0% | |
| TTTATGAAATTGTGCAGAAC+TGG | + | tig0015546:36499-36518 | Msa1356280:intron | 30.0% | |
| ! | AAAGCAAAAGTTTTACCATC+TGG | - | tig0015546:36610-36629 | None:intergenic | 30.0% |
| TTTCTGTGCAATAGAGTAAA+TGG | - | tig0015546:36672-36691 | None:intergenic | 30.0% | |
| GGATTTATAAAACTTCACCT+CGG | - | tig0015546:36909-36928 | None:intergenic | 30.0% | |
| TCTCCTTAACTATATCTTGA+AGG | + | tig0015546:37142-37161 | Msa1356280:intron | 30.0% | |
| ! | CTATTCCATTTGATTTAGAG+AGG | + | tig0015546:37538-37557 | Msa1356280:intron | 30.0% |
| AACTCTTGGACTAAAGATAA+TGG | - | tig0015546:37837-37856 | None:intergenic | 30.0% | |
| AGTTTAATTGCTCTATAGCT+TGG | + | tig0015546:37954-37973 | Msa1356280:intron | 30.0% | |
| GTTTAATTGCTCTATAGCTT+GGG | + | tig0015546:37955-37974 | Msa1356280:intron | 30.0% | |
| TTAATATCTACTCTTTGTCG+TGG | + | tig0015546:37982-38001 | Msa1356280:intron | 30.0% | |
| TAATATCTACTCTTTGTCGT+GGG | + | tig0015546:37983-38002 | Msa1356280:intron | 30.0% | |
| !!! | TTCAGTTTTGGTTATTGAAC+AGG | + | tig0015546:38052-38071 | Msa1356280:intron | 30.0% |
| TTTCAGAGAAATAAGAACAC+AGG | - | tig0015546:38110-38129 | None:intergenic | 30.0% | |
| ATTCTATTCACTACAAACAG+AGG | - | tig0015546:38225-38244 | None:intergenic | 30.0% | |
| ACACCTTTGAATTGATGTAA+AGG | + | tig0015546:38286-38305 | Msa1356280:three_prime_UTR | 30.0% | |
| TGAAGGTGATTAGATTAAGG+AGG | - | tig0015546:32876-32895 | None:intergenic | 35.0% | |
| ACGAAAGAAGATTAGCGTAA+TGG | - | tig0015546:32924-32943 | None:intergenic | 35.0% | |
| TTTAACAAATCTAATCGCGC+CGG | - | tig0015546:33087-33106 | None:intergenic | 35.0% | |
| !! | GCGCGATTAGATTTGTTAAA+AGG | + | tig0015546:33087-33106 | Msa1356280:CDS | 35.0% |
| !! | AGATACTGTTTCTGACAATG+AGG | + | tig0015546:33614-33633 | Msa1356280:CDS | 35.0% |
| AAGTTAGTCCTCAAATCACA+AGG | - | tig0015546:33862-33881 | None:intergenic | 35.0% | |
| TGTCAGATGGAATACGTTTA+AGG | + | tig0015546:33881-33900 | Msa1356280:intron | 35.0% | |
| ! | TAAGGACAATGCATGTTTTG+TGG | + | tig0015546:33899-33918 | Msa1356280:intron | 35.0% |
| ! | CAATCTACATTTAGGACATC+AGG | - | tig0015546:34380-34399 | None:intergenic | 35.0% |
| AAATTAGTCCTTGTGATTCG+AGG | + | tig0015546:34407-34426 | Msa1356280:intron | 35.0% | |
| TGTCTGATGGAATACGTTTA+AGG | + | tig0015546:34437-34456 | Msa1356280:intron | 35.0% | |
| TAAGGACAATGCATGTATAG+TGG | + | tig0015546:34455-34474 | Msa1356280:intron | 35.0% | |
| !! | GGATGAATTTGCTTTTGAGA+AGG | - | tig0015546:34718-34737 | None:intergenic | 35.0% |
| ! | CCAGAAACTAGCATTTTTCT+TGG | - | tig0015546:34751-34770 | None:intergenic | 35.0% |
| ! | CCAAGAAAAATGCTAGTTTC+TGG | + | tig0015546:34748-34767 | Msa1356280:intron | 35.0% |
| AGTATTTAGATGAGACAGAC+AGG | - | tig0015546:34873-34892 | None:intergenic | 35.0% | |
| TGTCTGTCTCATCTAAATAC+TGG | + | tig0015546:34872-34891 | Msa1356280:intron | 35.0% | |
| ACAAATCCTGAAATGTAGCA+TGG | - | tig0015546:34920-34939 | None:intergenic | 35.0% | |
| CTTAACATCACTTACAGACT+AGG | - | tig0015546:35033-35052 | None:intergenic | 35.0% | |
| TATCCTGGGTTTAACCAATA+GGG | - | tig0015546:35146-35165 | None:intergenic | 35.0% | |
| ATATCCTGGGTTTAACCAAT+AGG | - | tig0015546:35147-35166 | None:intergenic | 35.0% | |
| ATACACGACAACTAGTAATG+CGG | - | tig0015546:35211-35230 | None:intergenic | 35.0% | |
| TGCTCTTGAGTGTTAGTAAA+TGG | + | tig0015546:35330-35349 | Msa1356280:intron | 35.0% | |
| GTAAATGGATGTTATGGATC+TGG | + | tig0015546:35369-35388 | Msa1356280:intron | 35.0% | |
| TCATCAGTGACACATAACTA+TGG | + | tig0015546:35739-35758 | Msa1356280:CDS | 35.0% | |
| CATCAGTGACACATAACTAT+GGG | + | tig0015546:35740-35759 | Msa1356280:CDS | 35.0% | |
| TTTCCATCTAAACTTGCAGA+AGG | - | tig0015546:35832-35851 | None:intergenic | 35.0% | |
| TGAGTTTAATCTTCCCCTAA+TGG | + | tig0015546:35924-35943 | Msa1356280:CDS | 35.0% | |
| TCAAAAAGATCAGCCATTAG+GGG | - | tig0015546:35940-35959 | None:intergenic | 35.0% | |
| GTCAAAAAGATCAGCCATTA+GGG | - | tig0015546:35941-35960 | None:intergenic | 35.0% | |
| TGTCAAAAAGATCAGCCATT+AGG | - | tig0015546:35942-35961 | None:intergenic | 35.0% | |
| TACTGAAAAATAGAGGTGGA+AGG | - | tig0015546:36055-36074 | None:intergenic | 35.0% | |
| TGGATACTGAAAAATAGAGG+TGG | - | tig0015546:36059-36078 | None:intergenic | 35.0% | |
| ACGTGGATACTGAAAAATAG+AGG | - | tig0015546:36062-36081 | None:intergenic | 35.0% | |
| ! | CCTTTTCTTTGATTATCACG+TGG | - | tig0015546:36079-36098 | None:intergenic | 35.0% |
| CCACGTGATAATCAAAGAAA+AGG | + | tig0015546:36076-36095 | Msa1356280:CDS | 35.0% | |
| ACACATGAGAATTACTTTCC+CGG | + | tig0015546:36301-36320 | Msa1356280:CDS | 35.0% | |
| ! | ATTGTCTGCATTTTCTTTCC+CGG | - | tig0015546:36323-36342 | None:intergenic | 35.0% |
| GGTATAAAATTGTGGTTTCC+TGG | + | tig0015546:36417-36436 | Msa1356280:intron | 35.0% | |
| TACTTAGACAGCAATGGAAA+GGG | - | tig0015546:36644-36663 | None:intergenic | 35.0% | |
| TTACTTAGACAGCAATGGAA+AGG | - | tig0015546:36645-36664 | None:intergenic | 35.0% | |
| ! | GTGTTTTACTTAGACAGCAA+TGG | - | tig0015546:36650-36669 | None:intergenic | 35.0% |
| !!! | TTTTCATTTTTTGGGTTGGG+AGG | + | tig0015546:36718-36737 | Msa1356280:intron | 35.0% |
| TTTCTAATACACATGGACAG+AGG | + | tig0015546:36766-36785 | Msa1356280:intron | 35.0% | |
| AAGCATCATTTCAAGATACC+TGG | + | tig0015546:36841-36860 | Msa1356280:CDS | 35.0% | |
| ATCATTTCAAGATACCTGGA+TGG | + | tig0015546:36845-36864 | Msa1356280:CDS | 35.0% | |
| !! | TAATCATTGACTCCTTACTC+AGG | - | tig0015546:37038-37057 | None:intergenic | 35.0% |
| GTGCCTTCAAGATATAGTTA+AGG | - | tig0015546:37148-37167 | None:intergenic | 35.0% | |
| ACCTAACTTTCTTTACTTGC+AGG | - | tig0015546:37404-37423 | None:intergenic | 35.0% | |
| GAACATGTTAGTTGTAGACT+TGG | + | tig0015546:37461-37480 | Msa1356280:intron | 35.0% | |
| TTAGTTGTAGACTTGGAGAA+TGG | + | tig0015546:37468-37487 | Msa1356280:intron | 35.0% | |
| ATGCACCTCTCTAAATCAAA+TGG | - | tig0015546:37546-37565 | None:intergenic | 35.0% | |
| ! | TTTGATTTAGAGAGGTGCAT+TGG | + | tig0015546:37546-37565 | Msa1356280:intron | 35.0% |
| GGGTATATCTTAAATGTAGG+TGG | - | tig0015546:37704-37723 | None:intergenic | 35.0% | |
| TCTTGTACAAGCTAAAGGAA+TGG | + | tig0015546:37781-37800 | Msa1356280:CDS | 35.0% | |
| GTTACATAGCAATCTTACCA+CGG | - | tig0015546:37908-37927 | None:intergenic | 35.0% | |
| !!! | GTTTTGGTTATTGAACAGGA+AGG | + | tig0015546:38056-38075 | Msa1356280:intron | 35.0% |
| AATTGCATTTACCTCCTCTA+AGG | - | tig0015546:38398-38417 | None:intergenic | 35.0% | |
| TTTCATCCTCAGTAACATAG+AGG | - | tig0015546:38464-38483 | None:intergenic | 35.0% | |
| ! | ATCATGATGATGTGTGTAGA+GGG | - | tig0015546:38549-38568 | None:intergenic | 35.0% |
| ! | TATCATGATGATGTGTGTAG+AGG | - | tig0015546:38550-38569 | None:intergenic | 35.0% |
| GGAGGTGATGAAGATGTAAT+TGG | - | tig0015546:32858-32877 | None:intergenic | 40.0% | |
| ACAACAACAACTACCTCTTC+CGG | + | tig0015546:33065-33084 | Msa1356280:CDS | 40.0% | |
| CAATTCGTCTTCCTCATTTC+AGG | + | tig0015546:33214-33233 | Msa1356280:intron | 40.0% | |
| ! | ATTCTTACTCAGGCACTGTT+TGG | + | tig0015546:33264-33283 | Msa1356280:intron | 40.0% |
| TAAGCTATCTTGGAGAGCTT+AGG | + | tig0015546:33343-33362 | Msa1356280:intron | 40.0% | |
| ACTTGTGAGACTGTTTGGAT+TGG | - | tig0015546:33463-33482 | None:intergenic | 40.0% | |
| CAAACACTTGTGAGACTGTT+TGG | - | tig0015546:33468-33487 | None:intergenic | 40.0% | |
| ! | TTGAGGACTAACTTGTCAGA+TGG | + | tig0015546:33868-33887 | Msa1356280:intron | 40.0% |
| ! | ATAATGGAAATTACGCCCTG+AGG | - | tig0015546:33925-33944 | None:intergenic | 40.0% |
| ACCAACATTGTATCTTTCGG+AGG | + | tig0015546:33960-33979 | Msa1356280:intron | 40.0% | |
| AAGTTAGTCCTCGAATCACA+AGG | - | tig0015546:34418-34437 | None:intergenic | 40.0% | |
| ATGACCAACGCTGTATCTTT+CGG | + | tig0015546:34513-34532 | Msa1356280:intron | 40.0% | |
| GTATCTTTCGGTGGCTAATT+TGG | + | tig0015546:34525-34544 | Msa1356280:intron | 40.0% | |
| ACCAGACTCCTCCAAAAATA+TGG | + | tig0015546:34600-34619 | Msa1356280:CDS | 40.0% | |
| !!! | ATTGAGGGCCATATTTTTGG+AGG | - | tig0015546:34611-34630 | None:intergenic | 40.0% |
| !! | ATTTTTCTTGGTGCAGGTAC+CGG | - | tig0015546:34739-34758 | None:intergenic | 40.0% |
| !! | ACTAGCATTTTTCTTGGTGC+AGG | - | tig0015546:34745-34764 | None:intergenic | 40.0% |
| ACAGGACACTCGAGAAATAT+AGG | - | tig0015546:34855-34874 | None:intergenic | 40.0% | |
| TGTTCTCCATGCTACATTTC+AGG | + | tig0015546:34911-34930 | Msa1356280:intron | 40.0% | |
| !! | TAGAAGAGGCACTCATGAAT+TGG | - | tig0015546:35007-35026 | None:intergenic | 40.0% |
| TACAGACTAGGAGTTAGAAG+AGG | - | tig0015546:35021-35040 | None:intergenic | 40.0% | |
| ATCCTGGGTTTAACCAATAG+GGG | - | tig0015546:35145-35164 | None:intergenic | 40.0% | |
| ACCTTCCTAGATAAAGAGAG+AGG | + | tig0015546:35273-35292 | Msa1356280:intron | 40.0% | |
| ATGTGCCTCTCTCTTTATCT+AGG | - | tig0015546:35281-35300 | None:intergenic | 40.0% | |
| ! | TAGATAAAGAGAGAGGCACA+TGG | + | tig0015546:35280-35299 | Msa1356280:intron | 40.0% |
| ! | AGATAAAGAGAGAGGCACAT+GGG | + | tig0015546:35281-35300 | Msa1356280:intron | 40.0% |
| ATCGAACTGATAACTGTTGC+AGG | + | tig0015546:35679-35698 | Msa1356280:intron | 40.0% | |
| TCTCGAAGATGATGACATAG+TGG | + | tig0015546:35855-35874 | Msa1356280:CDS | 40.0% | |
| AGGGGAAGATTAAACTCATG+TGG | - | tig0015546:35922-35941 | None:intergenic | 40.0% | |
| ! | TGATCTTTTTGACAACCTCC+TGG | + | tig0015546:35948-35967 | Msa1356280:CDS | 40.0% |
| AGGTGGAAGGATCATATACA+TGG | - | tig0015546:36042-36061 | None:intergenic | 40.0% | |
| TATATCCCATTTGCCAGAGA+CGG | + | tig0015546:36129-36148 | Msa1356280:CDS | 40.0% | |
| CACATGAGAATTACTTTCCC+GGG | + | tig0015546:36302-36321 | Msa1356280:CDS | 40.0% | |
| ! | TTGTCTGCATTTTCTTTCCC+GGG | - | tig0015546:36322-36341 | None:intergenic | 40.0% |
| GGGAAAGAAAATGCAGACAA+TGG | + | tig0015546:36322-36341 | Msa1356280:CDS | 40.0% | |
| AACACTTTCAGCGATAACAG+AGG | - | tig0015546:36378-36397 | None:intergenic | 40.0% | |
| ! | TCTGTTATCGCTGAAAGTGT+TGG | + | tig0015546:36377-36396 | Msa1356280:CDS | 40.0% |
| TTGGAGCACATAACTCATTG+AGG | + | tig0015546:36396-36415 | Msa1356280:CDS | 40.0% | |
| TTCTCCAAAAAGTTGCAAGC+TGG | + | tig0015546:36577-36596 | Msa1356280:CDS | 40.0% | |
| AAACAATCAGCTTTCCATCC+AGG | - | tig0015546:36862-36881 | None:intergenic | 40.0% | |
| CTCATTTAGCAAGTATACCG+AGG | + | tig0015546:36889-36908 | Msa1356280:CDS | 40.0% | |
| GCCTGCAAGTAAAGAAAGTT+AGG | + | tig0015546:37400-37419 | Msa1356280:intron | 40.0% | |
| ! | TTTAGAGAGGTGCATTGGAT+TGG | + | tig0015546:37551-37570 | Msa1356280:intron | 40.0% |
| ! | TTAGAGAGGTGCATTGGATT+GGG | + | tig0015546:37552-37571 | Msa1356280:intron | 40.0% |
| TCAACATTGTCGCAAACTCT+TGG | - | tig0015546:37851-37870 | None:intergenic | 40.0% | |
| GACAATGTTGACCTTGAAGT+GGG | + | tig0015546:37860-37879 | Msa1356280:CDS | 40.0% | |
| ACAATGTTGACCTTGAAGTG+GGG | + | tig0015546:37861-37880 | Msa1356280:CDS | 40.0% | |
| AACAGGAAGGAAGTTCAAGT+GGG | + | tig0015546:38069-38088 | Msa1356280:intron | 40.0% | |
| TGACCACATGAATCAAACTG+GGG | - | tig0015546:38139-38158 | None:intergenic | 40.0% | |
| CTGACCACATGAATCAAACT+GGG | - | tig0015546:38140-38159 | None:intergenic | 40.0% | |
| TCTGACCACATGAATCAAAC+TGG | - | tig0015546:38141-38160 | None:intergenic | 40.0% | |
| TGCATTTCAATGGACCTTAG+AGG | + | tig0015546:38381-38400 | Msa1356280:three_prime_UTR | 40.0% | |
| ATTTCAATGGACCTTAGAGG+AGG | + | tig0015546:38384-38403 | Msa1356280:three_prime_UTR | 40.0% | |
| TCAGTAACATAGAGGCTTCA+AGG | - | tig0015546:38456-38475 | None:intergenic | 40.0% | |
| TTGAAGCCTCTATGTTACTG+AGG | + | tig0015546:38455-38474 | Msa1356280:three_prime_UTR | 40.0% | |
| GAAATGCTGTCTTCTGAGTG+TGG | - | tig0015546:32813-32832 | None:intergenic | 45.0% | |
| CACTCAGAAGACAGCATTTC+CGG | + | tig0015546:32813-32832 | Msa1356280:CDS | 45.0% | |
| ACAAAACCACGCTACCAACA+AGG | + | tig0015546:32945-32964 | Msa1356280:CDS | 45.0% | |
| TAAGCGTGAACGAACCTTGT+TGG | - | tig0015546:32962-32981 | None:intergenic | 45.0% | |
| TCAGAAGTCACTCGAAGATG+AGG | + | tig0015546:33515-33534 | Msa1356280:intron | 45.0% | |
| AGATGAGGAGGTTGAAATGC+CGG | + | tig0015546:33530-33549 | Msa1356280:intron | 45.0% | |
| ! | AATGCATGTTTTGTGGCCTC+AGG | + | tig0015546:33906-33925 | Msa1356280:intron | 45.0% |
| ! | ATGCATGTTTTGTGGCCTCA+GGG | + | tig0015546:33907-33926 | Msa1356280:intron | 45.0% |
| GCCTCCGAAAGATACAATGT+TGG | - | tig0015546:33964-33983 | None:intergenic | 45.0% | |
| ! | GTATCTTTCGGAGGCTAGTT+TGG | + | tig0015546:33969-33988 | Msa1356280:intron | 45.0% |
| TCAGAAGTTGCTCGAAGATG+AGG | + | tig0015546:34077-34096 | Msa1356280:intron | 45.0% | |
| AGATGAGGAGGTTGAAATGC+CGG | + | tig0015546:33530-33549 | Msa1356280:intron | 45.0% | |
| TGAAATGCCGGACTTCAATG+AGG | + | tig0015546:34104-34123 | Msa1356280:CDS | 45.0% | |
| GAAATGCCGGACTTCAATGA+GGG | + | tig0015546:34105-34124 | Msa1356280:CDS | 45.0% | |
| TTGTCACCCTCATTGAAGTC+CGG | - | tig0015546:34114-34133 | None:intergenic | 45.0% | |
| ACTTCAATGAGGGTGACAAC+CGG | + | tig0015546:34115-34134 | Msa1356280:CDS | 45.0% | |
| GGTGACAACCGGAATGAATT+GGG | + | tig0015546:34126-34145 | Msa1356280:CDS | 45.0% | |
| ! | TCGAGGACTAACTTGTCTGA+TGG | + | tig0015546:34424-34443 | Msa1356280:intron | 45.0% |
| AATGCATGTATAGTGGCCTC+AGG | + | tig0015546:34462-34481 | Msa1356280:intron | 45.0% | |
| ATGCATGTATAGTGGCCTCA+GGG | + | tig0015546:34463-34482 | Msa1356280:intron | 45.0% | |
| ACAATGGAAATTACGCCCTG+AGG | - | tig0015546:34481-34500 | None:intergenic | 45.0% | |
| !!! | GCCATATTTTTGGAGGAGTC+TGG | - | tig0015546:34604-34623 | None:intergenic | 45.0% |
| !! | TGCTTTTGAGAAGGTCGCAT+GGG | - | tig0015546:34709-34728 | None:intergenic | 45.0% |
| !! | TTGCTTTTGAGAAGGTCGCA+TGG | - | tig0015546:34710-34729 | None:intergenic | 45.0% |
| ! | TTCCCCTATTGGTTAAACCC+AGG | + | tig0015546:35140-35159 | Msa1356280:intron | 45.0% |
| GCCTCTCTCTTTATCTAGGA+AGG | - | tig0015546:35277-35296 | None:intergenic | 45.0% | |
| ! | ATCTTGCTGTACGTGCAGTT+TGG | + | tig0015546:35507-35526 | Msa1356280:intron | 45.0% |
| TGATAACTGTTGCAGGCATC+TGG | + | tig0015546:35686-35705 | Msa1356280:intron | 45.0% | |
| ! | AGGCATCTGGAACAAAGCTA+AGG | + | tig0015546:35699-35718 | Msa1356280:intron | 45.0% |
| ACACATAACTATGGGCTCAC+TGG | + | tig0015546:35748-35767 | Msa1356280:CDS | 45.0% | |
| AGGCCTTCTGCAAGTTTAGA+TGG | + | tig0015546:35826-35845 | Msa1356280:CDS | 45.0% | |
| AGCTTCAGTTTCAGAAGGCT+CGG | - | tig0015546:35896-35915 | None:intergenic | 45.0% | |
| CTGGATAAGACTGATCTGGT+GGG | + | tig0015546:35967-35986 | Msa1356280:intron | 45.0% | |
| AACAACCGTCTCTGGCAAAT+GGG | - | tig0015546:36137-36156 | None:intergenic | 45.0% | |
| CGGATCATCAAGTGACAATG+AGG | + | tig0015546:36189-36208 | Msa1356280:CDS | 45.0% | |
| GCAGGCGATGCAAAAAGAAA+AGG | + | tig0015546:36540-36559 | Msa1356280:CDS | 45.0% | |
| ! | AGCTCCAGCTTGCAACTTTT+TGG | - | tig0015546:36584-36603 | None:intergenic | 45.0% |
| ! | GAAGCATTTCGTGCAACCTA+TGG | - | tig0015546:36930-36949 | None:intergenic | 45.0% |
| TATCCTAGAATGCACCCTCA+AGG | + | tig0015546:36996-37015 | Msa1356280:intron | 45.0% | |
| CCTTGAAATCAAGGCCTTGA+GGG | - | tig0015546:37013-37032 | None:intergenic | 45.0% | |
| CCTCAAGGCCTTGATTTCAA+GGG | + | tig0015546:37011-37030 | Msa1356280:intron | 45.0% | |
| ACTCAGGACCCTTGAAATCA+AGG | - | tig0015546:37022-37041 | None:intergenic | 45.0% | |
| GATTTCAAGGGTCCTGAGTA+AGG | + | tig0015546:37023-37042 | Msa1356280:intron | 45.0% | |
| TTGCAGGCTGCAGCTTATAA+TGG | - | tig0015546:37388-37407 | None:intergenic | 45.0% | |
| TGGAGAATGGAGACTCATGA+TGG | + | tig0015546:37481-37500 | Msa1356280:intron | 45.0% | |
| CGACAATGTTGACCTTGAAG+TGG | + | tig0015546:37859-37878 | Msa1356280:CDS | 45.0% | |
| CATAGCAATCTTACCACGGA+GGG | - | tig0015546:37904-37923 | None:intergenic | 45.0% | |
| ACATAGCAATCTTACCACGG+AGG | - | tig0015546:37905-37924 | None:intergenic | 45.0% | |
| GAACAGGAAGGAAGTTCAAG+TGG | + | tig0015546:38068-38087 | Msa1356280:intron | 45.0% | |
| GACCACATGAATCAAACTGG+GGG | - | tig0015546:38138-38157 | None:intergenic | 45.0% | |
| TCGATAGTAAAAAAGGGGCG+TGG | + | tig0015546:38356-38375 | Msa1356280:three_prime_UTR | 45.0% | |
| ! | CGATAGTAAAAAAGGGGCGT+GGG | + | tig0015546:38357-38376 | Msa1356280:three_prime_UTR | 45.0% |
| !! | AACGAACCTTGTTGGTAGCG+TGG | - | tig0015546:32954-32973 | None:intergenic | 50.0% |
| AAATCTAATCGCGCCGGAAG+AGG | - | tig0015546:33081-33100 | None:intergenic | 50.0% | |
| GAAGTCACTCGAAGATGAGG+AGG | + | tig0015546:33518-33537 | Msa1356280:intron | 50.0% | |
| TGAAATGCCGGACTTCAACG+AGG | + | tig0015546:33542-33561 | Msa1356280:intron | 50.0% | |
| GAAATGCCGGACTTCAACGA+GGG | + | tig0015546:33543-33562 | Msa1356280:intron | 50.0% | |
| TTGTCACCCTCGTTGAAGTC+CGG | - | tig0015546:33552-33571 | None:intergenic | 50.0% | |
| GGTGACAACCGCGATGTATT+GGG | + | tig0015546:33564-33583 | Msa1356280:intron | 50.0% | |
| GAAGTTGCTCGAAGATGAGG+AGG | + | tig0015546:34080-34099 | Msa1356280:intron | 50.0% | |
| GGGTGACAACCGGAATGAAT+TGG | + | tig0015546:34125-34144 | Msa1356280:CDS | 50.0% | |
| CAACCGGAATGAATTGGGAG+AGG | + | tig0015546:34131-34150 | Msa1356280:CDS | 50.0% | |
| CCACCTCTCCCAATTCATTC+CGG | - | tig0015546:34137-34156 | None:intergenic | 50.0% | |
| ACCAACGCTGTATCTTTCGG+TGG | + | tig0015546:34516-34535 | Msa1356280:intron | 50.0% | |
| GGACGAGCTTCAGTTTCAGA+AGG | - | tig0015546:35901-35920 | None:intergenic | 50.0% | |
| ! | CCAGATCAGTCTTATCCAGG+AGG | - | tig0015546:35966-35985 | None:intergenic | 50.0% |
| CCTCCTGGATAAGACTGATC+TGG | + | tig0015546:35963-35982 | Msa1356280:CDS | 50.0% | |
| ! | CCACCAGATCAGTCTTATCC+AGG | - | tig0015546:35969-35988 | None:intergenic | 50.0% |
| CCTGGATAAGACTGATCTGG+TGG | + | tig0015546:35966-35985 | Msa1356280:intron | 50.0% | |
| GATAAGACTGATCTGGTGGG+TGG | + | tig0015546:35970-35989 | Msa1356280:intron | 50.0% | |
| CAACAACCGTCTCTGGCAAA+TGG | - | tig0015546:36138-36157 | None:intergenic | 50.0% | |
| TCACTGTCAACAACCGTCTC+TGG | - | tig0015546:36145-36164 | None:intergenic | 50.0% | |
| ATCCGCTATCCACAGGTTCA+GGG | - | tig0015546:36174-36193 | None:intergenic | 50.0% | |
| ! | CTTGATGATCCGCTATCCAC+AGG | - | tig0015546:36181-36200 | None:intergenic | 50.0% |
| CCCTCAAGGCCTTGATTTCA+AGG | + | tig0015546:37010-37029 | Msa1356280:intron | 50.0% | |
| CCCTTGAAATCAAGGCCTTG+AGG | - | tig0015546:37014-37033 | None:intergenic | 50.0% | |
| GGATTAAGCTCCCCACTTCA+AGG | - | tig0015546:37874-37893 | None:intergenic | 50.0% | |
| TAATCCGTATTCACCCTCCG+TGG | + | tig0015546:37888-37907 | Msa1356280:CDS | 50.0% | |
| CTTACCACGGAGGGTGAATA+CGG | - | tig0015546:37895-37914 | None:intergenic | 50.0% | |
| CACCCCCAGTTTGATTCATG+TGG | + | tig0015546:38133-38152 | Msa1356280:exon | 50.0% | |
| GGTCGTAATCATGCTGCTGA+TGG | + | tig0015546:38501-38520 | Msa1356280:three_prime_UTR | 50.0% | |
| GCGTAATGGTCGTCGTCATC+TGG | - | tig0015546:32910-32929 | None:intergenic | 55.0% | |
| GGGTGACAACCGCGATGTAT+TGG | + | tig0015546:33563-33582 | Msa1356280:intron | 55.0% | |
| CAACCGCGATGTATTGGGAG+AGG | + | tig0015546:33569-33588 | Msa1356280:intron | 55.0% | |
| CCACCTCTCCCAATACATCG+CGG | - | tig0015546:33575-33594 | None:intergenic | 55.0% | |
| ! | GGGAGAGGTGGTTGCTGATT+CGG | + | tig0015546:33584-33603 | Msa1356280:intron | 55.0% |
| CCGGAATGAATTGGGAGAGG+TGG | + | tig0015546:34134-34153 | Msa1356280:CDS | 55.0% | |
| ! | GGGAGAGGTGGTTGCTGATT+CGG | + | tig0015546:33584-33603 | Msa1356280:intron | 55.0% |
| GCCACCGAAAGATACAGCGT+TGG | - | tig0015546:34520-34539 | None:intergenic | 55.0% | |
| TTTGGAGGAGTCTGGTCGAG+AGG | - | tig0015546:34596-34615 | None:intergenic | 55.0% | |
| TCCCCTGAACCTGTGGATAG+CGG | + | tig0015546:36169-36188 | Msa1356280:CDS | 55.0% | |
| TCCGCTATCCACAGGTTCAG+GGG | - | tig0015546:36173-36192 | None:intergenic | 55.0% | |
| GATCCGCTATCCACAGGTTC+AGG | - | tig0015546:36175-36194 | None:intergenic | 55.0% | |
| CAAGCTGGAGCTAGACCAGA+TGG | + | tig0015546:36592-36611 | Msa1356280:CDS | 55.0% | |
| ! | AGGCCTTGAGGGTGCATTCT+AGG | - | tig0015546:37002-37021 | None:intergenic | 55.0% |
| ! | GGGCGTGGGTTGCATTTCAA+TGG | + | tig0015546:38371-38390 | Msa1356280:three_prime_UTR | 55.0% |
| CCGCGATGTATTGGGAGAGG+TGG | + | tig0015546:33572-33591 | Msa1356280:intron | 60.0% | |
| TGACGACTCCCCTGAACCTG+TGG | + | tig0015546:36162-36181 | Msa1356280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015546 | gene | 32805 | 38572 | 32805 | ID=Msa1356280;Name=Msa1356280 |
| tig0015546 | mRNA | 32805 | 38572 | 32805 | ID=Msa1356280-mRNA-1;Parent=Msa1356280;Name=Msa1356280-mRNA-1;_AED=0.15;_eAED=0.17;_QI=0|0.81|0.75|1|0.90|0.83|12|426|494 |
| tig0015546 | exon | 32805 | 32966 | 32805 | ID=Msa1356280-mRNA-1:exon:9797;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 33054 | 33108 | 33054 | ID=Msa1356280-mRNA-1:exon:9798;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 33589 | 33635 | 33589 | ID=Msa1356280-mRNA-1:exon:9799;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 34081 | 34197 | 34081 | ID=Msa1356280-mRNA-1:exon:9800;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 34582 | 34738 | 34582 | ID=Msa1356280-mRNA-1:exon:9801;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 35701 | 35984 | 35701 | ID=Msa1356280-mRNA-1:exon:9802;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 36073 | 36210 | 36073 | ID=Msa1356280-mRNA-1:exon:9803;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 36290 | 36417 | 36290 | ID=Msa1356280-mRNA-1:exon:9804;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 36516 | 36613 | 36516 | ID=Msa1356280-mRNA-1:exon:9805;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 36819 | 36910 | 36819 | ID=Msa1356280-mRNA-1:exon:9806;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 37776 | 37909 | 37776 | ID=Msa1356280-mRNA-1:exon:9807;Parent=Msa1356280-mRNA-1 |
| tig0015546 | exon | 38074 | 38572 | 38074 | ID=Msa1356280-mRNA-1:exon:9808;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 32805 | 32966 | 32805 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 33054 | 33108 | 33054 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 33589 | 33635 | 33589 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 34081 | 34197 | 34081 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 34582 | 34738 | 34582 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 35701 | 35984 | 35701 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 36073 | 36210 | 36073 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 36290 | 36417 | 36290 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 36516 | 36613 | 36516 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 36819 | 36910 | 36819 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 37776 | 37909 | 37776 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | CDS | 38074 | 38146 | 38074 | ID=Msa1356280-mRNA-1:cds;Parent=Msa1356280-mRNA-1 |
| tig0015546 | three_prime_UTR | 38147 | 38572 | 38147 | ID=Msa1356280-mRNA-1:three_prime_utr;Parent=Msa1356280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
